CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483341	Streptococcus gordonii strain NCTC7865 genome assembly, chromosome: 1	3 crisprs	cas3,DEDDh,csa3,DinG,cas9,cas1,cas2,csn2,csm6,WYL	0	29	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483341_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483341_1

825545-825617

Orphan

Consensus_repeat	Method
ATAGTTCTCACGGAAACTTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483341_1

>merge|LS483341|1|825545-825617|CRISPRCasFinder
ATAGTTCTCACGGAAACTTTTTTCTTGACTTTCATTTTTGAAGTGTTAGAATAGTTCTCACGGAAACTTATTT

>LS483341|1|1|825545-825617|CRISPRCasFinder
ATAGTTCTCACGGAAACTTTTTT	CTTGACTTTCATTTTTGAAGTGTTAGA
ATAGTTCTCACGGAAACTTATTT

Protein	Signature genes	Signature genes Name	Protein_function
LS483341.1\|SQF27842.1\|831162_832776_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483341.1\|SQF27829.1\|824389_824800_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|181704
LS483341.1\|SQF27820.1\|819499_820423_+\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376134
LS483341.1\|SQF27857.1\|836591_837377_+\|ABC-transporter-permeae	unknown	unknown	gnl\|CDD\|226218
LS483341.1\|SQF27812.1\|814338_814953_+\|putative-integral-membrane-protein	unknown	unknown	gnl\|CDD\|227865
LS483341.1\|SQF27831.1\|824809_825379_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483341.1\|SQF27814.1\|814949_816584_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225519
LS483341.1\|SQF27821.1\|820749_822561_+\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LS483341.1\|SQF27840.1\|829775_830720_+\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
LS483341.1\|SQF27826.1\|823441_824341_+\|putative-fructokinase	unknown	unknown	gnl\|CDD\|366120
LS483341.1\|SQF27846.1\|833696_834578_+\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180926
LS483341.1\|SQF27835.1\|826102_827869_+\|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component	unknown	unknown	gnl\|CDD\|224055
LS483341.1\|SQF27818.1\|818010_819396_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|225343
LS483341.1\|SQF27849.1\|834777_835770_+\|ATP-binding-transport-protein	unknown	unknown	gnl\|CDD\|226952
LS483341.1\|SQF27844.1\|832846_833257_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379638
LS483341.1\|SQF27816.1\|816593_817877_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|227095
LS483341.1\|SQF27855.1\|835771_836590_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226953
LS483341.1\|SQF27832.1\|825651_826110_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
LS483341.1\|SQF27824.1\|822676_823096_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483341.1\|SQF27838.1\|827858_829616_+\|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
LS483341.1\|SQF27842.1\|831162_832776_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483341.1\|SQF27840.1\|829775_830720_+\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	1.45989e-144
LS483341.1\|SQF27857.1\|836591_837377_+\|ABC-transporter-permeae	gnl\|CDD\|226218	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only].	2.27816e-107
LS483341.1\|SQF27826.1\|823441_824341_+\|putative-fructokinase	gnl\|CDD\|366120	pfam00480, ROK, ROK family.	1.0343e-83
LS483341.1\|SQF27812.1\|814338_814953_+\|putative-integral-membrane-protein	gnl\|CDD\|227865	COG5578, COG5578, Predicted integral membrane protein [Function unknown].	8.24887e-27
LS483341.1\|SQF27814.1\|814949_816584_+\|histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	6.99349e-64
LS483341.1\|SQF27829.1\|824389_824800_+\|peptide-deformylase	gnl\|CDD\|181704	PRK09218, PRK09218, peptide deformylase; Validated.	1.93559e-93
LS483341.1\|SQF27838.1\|827858_829616_+\|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.02052e-171
LS483341.1\|SQF27846.1\|833696_834578_+\|fructose-bisphosphate-aldolase	gnl\|CDD\|180926	PRK07315, PRK07315, fructose-bisphosphate aldolase; Provisional.	0
LS483341.1\|SQF27835.1\|826102_827869_+\|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.95415e-138
LS483341.1\|SQF27818.1\|818010_819396_+\|6-phospho-beta-glucosidase	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
LS483341.1\|SQF27849.1\|834777_835770_+\|ATP-binding-transport-protein	gnl\|CDD\|226952	COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	0
LS483341.1\|SQF27844.1\|832846_833257_+\|Uncharacterised-protein	gnl\|CDD\|379638	pfam14526, Cass2, Integron-associated effector binding protein. This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.	1.52247e-08
LS483341.1\|SQF27816.1\|816593_817877_+\|DNA-binding-response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.58069e-110
LS483341.1\|SQF27855.1\|835771_836590_+\|membrane-protein	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	2.48534e-92
LS483341.1\|SQF27832.1\|825651_826110_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.8344e-09
LS483341.1\|SQF27820.1\|819499_820423_+\|putative-transcriptional-regulator	gnl\|CDD\|376134	pfam18710, ComR_TPR, ComR tetratricopeptide. In Gram-positive bacteria, cell-to-cell communication mainly relies on extracellular signaling peptides. ComR is a member of the RNPP family, which positively controls competence for natural DNA transformation in streptococci. It is directly activated by the binding of its associated pheromone XIP. The crystal structure analysis of ComR shows that it contains an N-terminal helix-turn-helix (HTH), DNA binding domain (DBD) and a C-terminal tetratricopeptide repeat (TPR) domain. The TPR domain is composed of 11 alpha-helices forming 5 TPR motifs followed by an additional C-terminal alpha-helix 16 called CAP. The pheromone XIP binding site is found in the TPR region. Biochemical and mutational analysis indicate that, if the interacting XIP is accepted it can then trigger the conformational change of the TPR domain to open the DBD-TPR interface to allow dimer formation that is required to bind DNA.	2.20829e-48
LS483341.1\|SQF27821.1\|820749_822561_+\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0

>LS483341.1|SQF27831.1|824809_825379_+|Uncharacterised-protein
MKVYKRDGSTFYFIGFLLLLGIFFTMAFASLDNQTPASESQNNANQIIYRNPISKEDERNGQTSEESDVMLNMVYWGVGIIAILMFVLGYISNHRPPILEMDQSGMRLRGLSDKSEKFFLWQEIEMIEYDLYRSHRTSADPDIRILYFYPKDQDASAISLNLDHVKDVSFNELHQQISELAPHIKWLFP
>LS483341.1|SQF27829.1|824389_824800_+|peptide-deformylase
MQQSIVKDILFLQQKSEVAVKSDLYLAQDLQDTLLANQENCVGLAANMIGVKKRVIIFMYGMVPIIMFNPVLRAKSGPYQTEEACLSLVGSRSTTRYQEITVDYLDRNWQPQTITLKDFPAQICQHELDHLEGILI
>LS483341.1|SQF27826.1|823441_824341_+|putative-fructokinase
MTKLYGSLEAGGTKFVCAVGNEKFEIVEKTQFPTTTPIETLDKTIEFFSRFDNLAGLAVGSFGPIDIDQNSKTYGFITTTPKPHWANVDIVGVLRRALNVPIYFTTDVNSSAFGEVVARNNAGGRIENLVYYTIGTGIGAGAIQRGEFIGGAGHPEMGHYYVAKHPMDVEKEFNGVCPFHNGCLEGLAAGPSLEARTGIRGENIELNSSVWDIQAYYIAQAAIQATVTFRPDVIVFGGGVMAQQHMLDRVREKFTVLLNGYLPVPDVRDYIVTPAVAGNGSATLGNFVLAKEISERHAK
>LS483341.1|SQF27824.1|822676_823096_+|Uncharacterised-protein
MKKKGNVIALIVGFVFGSSFLVRTFLIYQAREVKRQEVAKVKDVQKTIQSLDEERSEEVKKQLSKTLSSALASKSAYEKYTQIDNQYALGVRAGAYYLVTLSTKEERLLEGVDQAFSTTYKDEDSGENGVALLGHKDGA
>LS483341.1|SQF27821.1|820749_822561_+|glucosamine--fructose-6-phosphate-aminotransferase
MCGIVGVVGNRNATDILMQGLEKLEYRGYDSAGIFVTTGKNSSLVKSVGRIADLRSKIGIDVAGSTGIGHTRWATHGKPSESNAHPHRSEAGRFVLVHNGVIENYLEIKEEYLAGHHFKGQTDTEIAVHLIGKFVEEDGLSVLEAFKKALHTIRGSYAFALVDSEDSEVIYVAKNKSPLLVGLGEGYNMVCSDAMAMIRETNQFMEIHDQELVIVRKDSVEVQDYDGNLQKRESYTAELDLSDIGKGTYPYYMLKEIDEQPTVMRKLIQAYTDENGQVVVDPAIVKAVQEADRIYILAAGTSYHAGFASKKMLEELTDTPVELGISSEWGYSMPLLSKKPLFIFISQSGETADSRQVLVKANEMGIPSLTVTNVPGSTLSREANHTMLLHAGPEIAVASTKAYTAQIAALAFLAKAVGDANASEKAAAFDLVHELSLVAQSIESTLSEKELIESKVDNLLGTTRNAFYIGRGQDYYVAMEASLKLKEISYIQCEGFAAGELKHGTIALIEEGTPVLALLSDPVLANHTRGNIQEVAARGANVLTIAEENVAKDNDDIVLSQVHPYLSPISMVVPTQLVAYYATLHRGLDVDKPRNLAKSVTVE
>LS483341.1|SQF27820.1|819499_820423_+|putative-transcriptional-regulator
MDFKTELGQRIQNLRESKGLSRQAICDLEDVLTTRQLQRIEKGQSLPTIATAKYIADKLDVSLDVLANNNSLELPPEYIDLKYQLRTLYHYGDPERLRLLEKIIDEIYENYFENLPEEEQISIQVAQATVDMIGAKDPSFDQGLLDEYLEQAMKKKELSFNDVEIIQLRLLSLALGDFNQEEFVDLLSKVILAADYFPLSELEKVQNTIVSAAGVLAHYGIYEILPDIVNVLNDIMTKRRNFQDNIFVHALNWKVALFVEDNLEKAKNDYQKVCMMADLLSEDLVKRNMQEEWIEDLGKKGLKYTNI
>LS483341.1|SQF27818.1|818010_819396_+|6-phospho-beta-glucosidase
MLTFPKDFVWGSSTSGPQTEGRVSGDGKGDNLWDYWYQVEPNRYYNEIGPEQTSTFYQHWEQDIDLLVETGHTAFRTSIQWSRIFPQGRGEVNPQGVAFYRQVFGAIKAKGIRLLVNLYHFDLPFALQEDGDGWENKATIKAYVDYARFCFETYGDLVDQWITFNEPIVPVEFGYFYDAHYPHKVDAKAAVQVAYHTQLASTLAVKACHEILPDSKIGIVLNLTPAYPRSQHPADVKAARIADLFQAQSFLDPSVLGTYPEELVKILSEHDLLPDYTAEELELIREHTVDFLGVNYYQPLRVMAPRFAKHPDSPLLPEHFYEPYVMPGRKINPHRGWEIYEQGIYDIAQNIKENYGNIEWMLTENGMGVEGEERFREDGFIQDDYRIDFVKGHLRQLYRAIQDGANCTGYLMWTFIDCWSWLNSYKNRYGLIELNLETQERIIKKSGYWFRKLSQQNGFEE
>LS483341.1|SQF27816.1|816593_817877_+|DNA-binding-response-regulator
MHKVLLVDDEYMITEGLKVLIPFEKWNMEVVATANDAEEALDYVKNHPVDLVITDVNMPGMNGLEMIAQMKESLPKLAFIILSGYQEFEYVKKALNLQVADYLVKPVNKVELAAILEKLSQQFDQSSHHQMEAIFQDGLSEEDLTRLLEKEGTIWLGASRVPQGIASTSYSVSGQNLYLFLSRTKEESLYQIELVSPYKENLQQFKFNLEKVVFYGTVGLQQADPLFQYYEPMYRVIIQGNINQILDELDLLKGVVLSHTPRISITKQLFIQFMMDVYHLFEHLKPDDMTSIIKEIEGMMSFEDLLDYIKQKLTHLFAQYRMNENVASVLEVIGRDYQKDLSLKDISKDLFINPVYLGQLIKRETNSTFAELLNKQRIKAAQQLLLSTNDSIEDVCYAVGYSNVGYFYKVFRKLCGKSPKAYRQQVD
>LS483341.1|SQF27814.1|814949_816584_+|histidine-kinase
MKKFWLNSLLRVYAMTMFVIVGFVALLISYASWQSKVQEVTETSQRISTRLVDEVESYYQRGVQITKSLVGNQAKLEGVYNYFTMSPSEYIYWRLNNGLLGIVEVSLHENVADIYLQNDFVAGFDIALQDYKTVFVSTRQKQGGMQVEASKYKPAKNAFPIPIYDSVTSNHIGVVYLTIDSQVFEQTIDNIRNTTPVLVKITSPFQKNMLTFGEGKSKNWLVKETPHGYGVQVAVPEHYVLERSLVNAIAIVGISAILTGSLYLILQRVFRNYQRQVIDLVDTIQAIGQGDSHLRIETATKEQELLLIADNTNTMLDNLDRNIHDIYQLQLSQKDANMRALQAQINPHFMYNTLEFIRMYAVMKSQEELADIIYEFSSLLRNNISDETQVTLESELEFCRKYSYLCMVRHPNSVAYGFTIAEELKGMIIPKFTIQPLVENYFAHGVDYRRKDNVISVKVLKKSDAVQIIVQDNGCGIKADKLAEIQQILAKRQLENSENKEKRTSIGIINIHERFLLFFGDRYSIAVESGENKGVRYIIEIKDE
>LS483341.1|SQF27812.1|814338_814953_+|putative-integral-membrane-protein
MGKFIEFIFQKIYMAMLASGIFLVLTLCGGVLFGLAPASTVLMTLFAQYRYDYKAYKWQEAWSLFKENFLLSNQVFYTLLSIEAIFLYGLYLLVQLPQSILTVIISILNLLLALLLPLAYAVYLKLQVYFELSYVNSIKLSFIGMFLNIGAMFKIAFGTAMIIAIFYYMPALVFFVFLGAWHFFISDLLEPVYQLIASRLVDKP
>LS483341.1|SQF27832.1|825651_826110_+|MarR-family-transcriptional-regulator
MEKPLLEFKRFGRKTQRIIEKRAKVCGMEFMGGPQGQVLHIVSHRAKRGLSTFIRDIEHELDISKSVASNLIKRMEKNGSIFLEVSETDKRAKMIHLTAQSKQQLKELHDFFNEIDRCLLQGVSEEELATFTLVMAKFHQNIEKLESEDANV
>LS483341.1|SQF27835.1|826102_827869_+|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component
MFKLFKRLTSKEIGLILMTVVFICLTVYLELEVPTYMSEITTLLQTPGTTTGDLWVPGLKMLGLSFASLFSLVIAGFVSSRMASSYTTRLREDIFNRVLDYSNSEIKKFSIPSLLTRTTNDITQIQVFIAMGLQVVIRGSIMAIWAMTKVVGKSDAWLIAVLVAVAAIILMTIVLVTLAFPKQSIVQTLTDKLNSVTRESLTGIRVVRAYNAEDYQDAKFGAANDEVTSLNIFINRFMSLFNPIMSGISSGLTLAIYWIGAYLIHSAASADKLGLFSDMVVFMSYGMQVVIGFLLMGALFIVLPRTLVSAGRINKVLALDSSIKEKDQAKTEGQSKGQVTFEDVSFRYAKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLVNLIPRFYDVSEGRILVDGIDVRDYELKALRNKVGYIPQKAVLFSGTIASNLDFGESMETPLDEEKMWEALELAQAKSFVEEKEAELESEVSQGGTNYSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRKELAEQTQHMTKLIVAQRISTIMDADQILVLDNGKVVGQGTHKELLTTNEVYQEIAYSQLSKEELENGK
>LS483341.1|SQF27838.1|827858_829616_+|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component
MENKKTPLFTQMKPYIKGFQLPFVIAVTGAIISSIITVFGPYKLREITNLITDGLVGEMDLGAISNIGLFLVFLYVVGSLINYAQGYAISDMIQHFSKRLRTAIAEKINRLPLSYFDSHSQGDTLSRVTNDVDTVGQSLTQSLGTLISSVLLLIAVLFMMFYTNVVLSFVTIGSVLLGFVFSAVLMAKSQRYFQEQQSNLAAINGYVEEMYSGHNVITSYNGAEKTRLAFNALNQNLYTSMWKSQFISGIMFPLMNFVGNFGYVMVVIVGAIMAINGSISMGTIVAFMVYVRIFSQPLSQIAQGITTLQSASAAMGRVFEFLAEGDMEDDSHKLQQLTSVKGHVQFKDVFFGYNPDKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMKFYDIERGQIMIDGVDIKDMQRSEVHGAFSMVLQDTWLFEGTIKENLIYNQKDITDQAVVEAAKAVGVHHFIMTLPDGYDTVLDDTVSLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGSHDQLMEQGGFYADLYNSQFVEEEQE
>LS483341.1|SQF27840.1|829775_830720_+|mannose-6-phosphate-isomerase
MSEPLFLQSVMHEKIWGGTKLRDEFGYEIPSDKVGEYWAISAHPNGVSTVKNGRFAGQKLDTLYAEHRELFGDRSEPVFPLLTKILDANDWLSVQVHPDDAYGLKHEGELGKTECWYIIAADEGAEIIYGHNAKSKEELREQIESKNWDQLLTKVKVKAGDFYYVPSGTMHAIGSGILILETQQSSDTTYRVYDFDRKDDAGNLRELHLEKSIDVLNIGEPANSRPVNLQVDNLSSTLLVANDFFAVCKWELTGQADFTKTADYTLNSVLNGQGQLTVDGQVYPIHKGDHFILPSDVASWKLEGHDLEMIVSHP
>LS483341.1|SQF27842.1|831162_832776_+|CTP-synthetase
MSTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINIDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITDALKDKIKRAARTTDSDVIITEVGGTVGDIESLPFLEALRQMKADVGADNVMYIHTTLLPYLKAAGEMKTKPTQHSVKELRGLGIQPNMLVIRTEQPVGQNIKNKLAQFCDVAPEAVIESLDVEHLYQIPLNLQAQNMDQIVCDHLKLDVPVADMTEWSAMVEKVMNLKKQVHIALVGKYVELPDAYISVVEALKHAGYANDAEVKIDWIDTNQVTAENAAELLGNADGIIVPGGFGQRGTEGKIEAIRYAREQDVPMLGICLGMQLTCVEFARHVLGLADANSAELNPDTPYPIIDLMRDQIDVEDLGGTLRLGLYPSKLKRGSKAAEAYDHQEVVQRRHRHRYEFNNAFREKFEAAGFVFSGVSPDNRLVEIVEIPENKFFVACQYHPELSSRPNRPEGLYTAFVTAAVEKSQER
>LS483341.1|SQF27844.1|832846_833257_+|Uncharacterised-protein
MFLNILASIRTNNFQDEHCIEKIQTLWQEQEGAVKEAFAKGEPVYAVYHDYASDYKGDYSLSICRLTDGDIYDFDTSEQTYQVFEADKEDPQAILHAWQRIWQAEEKGDLHRDYTIDFEKYDPDQTVAVFVATQQH
>LS483341.1|SQF27846.1|833696_834578_+|fructose-bisphosphate-aldolase
MAIVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVARNLIANLVESMGITVPVAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPANWEGLDLDHLKKLTEALPGFPIVLHGGSGIPDDQIQAAIKLGVAKVNVNTECQIAFANATRQFVREYDANEAEYDKKKLFDPRKFLKPGFEAITAAVEERIDVFGSEGKA
>LS483341.1|SQF27849.1|834777_835770_+|ATP-binding-transport-protein
MAMIEVEHLQKNFVKTVKEPGLKGALRSFIHPEKQIFEAVKDLTFEVPKGQILGFIGANGAGKSTTIKMLTGILKPTSGFCRINGKIPQDNRQDYVKDIGVVFGQRTQLWWDLALQETYTVLKEIYDVPDSLFHRRMDFLNEVLDLKEFIKDPVRTLSLGQRMRADIAASLLHNPKVLFLDEPTIGLDVSVKDNIRRAITQINQEEETTILLTTHDLSDIEQLCDRIFMIDKGQEIFDGTVSQLKDTFGKMKTLSFELLPGQSHLVSHYEGLSDMTIDRQGNSLNIEFDSSRYQSADIIKQTLSDFEIRDLKMEDTDIEDIIRRFYRKEL
>LS483341.1|SQF27855.1|835771_836590_+|membrane-protein
MVKLWRRYKPFINAGIQELISYRVNFLLYRIGDVMGAFVAFYLWKAVFDSSQESLIQGFSMADITLYIIMSFVTNLLTKSDSSFMIGEEVKDGSIIMRLLRPVHFAASYLFTELGSKWLIFISVGLPFLCVIVLMKILSGQGIVEVLGLTVLYLFSLMLAYLINFFFNICFGFSAFVFKNLWGSNLLKTSIVAFMSGSLIPLAFFPKVVSEILSFLPFSSLIYTPVMIIVGKYDASQILQALLLQFFWLLVMLGLSQLIWKRVQSFITIQGG
>LS483341.1|SQF27857.1|836591_837377_+|ABC-transporter-permeae
MKKYQRMHLIFIRQYIKQIMEYKVDFVVGVLGVFLTQGLNLLFLNVIFQHIPSLEGWTFQEIAFIYGFSLIPKGLDHLFFDNLWALGQRLVRKGEFDKYLTRPINPLFHILVETFQIDALGELLVGGILLATTFSSITWTIPKFLLFLVCIPFATLIYTSLKIATASIAFWTKQSGAMIYIFYMFNDFAKYPISIYNSLLRWSISFIVPFAFTAYYPASYFLQNKNGLFNIGGLILISLVFFFISLKLWDRGLDAYESAGS

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Crispr_ID: LS483341_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483341_2

1225634-1225719

Orphan

Consensus_repeat	Method
GCGAGTTCCCTTTAATCTAAGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483341_2

>merge|LS483341|2|1225634-1225719|CRISPRCasFinder
GCGAGTTCCCTTTAATCTAAGGTTCGGGGAACCTTTTTAATCTGCGGATAGGGGCTCGCCTTTGCGAGTTCCCTTTAATCCAAGGT

>LS483341|2|2|1225634-1225719|CRISPRCasFinder
GCGAGTTCCCTTTAATCTAAGGT	TCGGGGAACCTTTTTAATCTGCGGATAGGGGCTCGCCTTT
GCGAGTTCCCTTTAATCCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483341.1\|SQF28588.1\|1214021_1214915_+\|ribonuclease-BN-family-protein	unknown	unknown	gnl\|CDD\|377085
LS483341.1\|SQF28627.1\|1234299_1234956_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|227580
LS483341.1\|SQF28625.1\|1233123_1234137_+\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|177883
LS483341.1\|SQF28618.1\|1230246_1230981_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|214625
LS483341.1\|SQF28594.1\|1216260_1216968_+\|B3/4-domain-containing-protein	unknown	unknown	gnl\|CDD\|225917
LS483341.1\|SQF28608.1\|1226014_1226281_+\|putative-chorismate-mutase	unknown	unknown	gnl\|CDD\|168880
LS483341.1\|SQF28592.1\|1215793_1216243_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
LS483341.1\|SQF28596.1\|1217062_1217485_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LS483341.1\|SQF28623.1\|1231635_1233111_+\|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|235382
LS483341.1\|SQF28606.1\|1224204_1225587_+\|FeS-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
LS483341.1\|SQF28590.1\|1215012_1215675_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483341.1\|SQF28614.1\|1227090_1227438_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
LS483341.1\|SQF28616.1\|1228031_1230260_+\|cell-wall-surface-anchor-family-protein	unknown	unknown	gnl\|CDD\|227721
LS483341.1\|SQF28612.1\|1226648_1226975_+\|camphor-resistance-protein-CrcB	unknown	unknown	gnl\|CDD\|172717
LS483341.1\|SQF28598.1\|1217516_1217954_-\|mesH-protein	unknown	unknown	gnl\|CDD\|377229
LS483341.1\|SQF28604.1\|1221717_1224015_+\|pullulanase	unknown	unknown	gnl\|CDD\|273975
LS483341.1\|SQF28600.1\|1218782_1220729_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
LS483341.1\|SQF28603.1\|1220738_1221695_+\|putative-lipid-kinase	unknown	unknown	gnl\|CDD\|237282
LS483341.1\|SQF28610.1\|1226277_1226652_+\|camphor-resistance-protein-CrcB	unknown	unknown	gnl\|CDD\|184575
LS483341.1\|SQF28620.1\|1230980_1231619_+\|PhoU-family	unknown	unknown	gnl\|CDD\|223776

Protein	Function_ID	Function_description	E-value
LS483341.1\|SQF28588.1\|1214021_1214915_+\|ribonuclease-BN-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.20962e-37
LS483341.1\|SQF28627.1\|1234299_1234956_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|227580	COG5255, COG5255, Uncharacterized protein conserved in bacteria [Function unknown].	4.11957e-116
LS483341.1\|SQF28625.1\|1233123_1234137_+\|UDP-glucose-4-epimerase	gnl\|CDD\|177883	PLN02240, PLN02240, UDP-glucose 4-epimerase.	0
LS483341.1\|SQF28618.1\|1230246_1230981_+\|Uncharacterised-protein	gnl\|CDD\|214625	smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.	5.99107e-05
LS483341.1\|SQF28594.1\|1216260_1216968_+\|B3/4-domain-containing-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	1.97618e-73
LS483341.1\|SQF28608.1\|1226014_1226281_+\|putative-chorismate-mutase	gnl\|CDD\|168880	PRK07248, PRK07248, chorismate mutase.	8.71476e-40
LS483341.1\|SQF28592.1\|1215793_1216243_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.84113e-15
LS483341.1\|SQF28596.1\|1217062_1217485_-\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.83273e-10
LS483341.1\|SQF28623.1\|1231635_1233111_+\|galactose-1-phosphate-uridylyltransferase	gnl\|CDD\|235382	PRK05270, PRK05270, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
LS483341.1\|SQF28606.1\|1224204_1225587_+\|FeS-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
LS483341.1\|SQF28614.1\|1227090_1227438_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.40737e-70
LS483341.1\|SQF28616.1\|1228031_1230260_+\|cell-wall-surface-anchor-family-protein	gnl\|CDD\|227721	COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane].	1.00953e-49
LS483341.1\|SQF28612.1\|1226648_1226975_+\|camphor-resistance-protein-CrcB	gnl\|CDD\|172717	PRK14229, PRK14229, fluoride efflux transporter CrcB.	3.595e-56
LS483341.1\|SQF28598.1\|1217516_1217954_-\|mesH-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	2.63209e-13
LS483341.1\|SQF28604.1\|1221717_1224015_+\|pullulanase	gnl\|CDD\|273975	TIGR02104, pulA_typeI, pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.	0
LS483341.1\|SQF28600.1\|1218782_1220729_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
LS483341.1\|SQF28603.1\|1220738_1221695_+\|putative-lipid-kinase	gnl\|CDD\|237282	PRK13055, PRK13055, putative lipid kinase; Reviewed.	0
LS483341.1\|SQF28610.1\|1226277_1226652_+\|camphor-resistance-protein-CrcB	gnl\|CDD\|184575	PRK14221, PRK14221, fluoride efflux transporter CrcB.	2.32959e-58
LS483341.1\|SQF28620.1\|1230980_1231619_+\|PhoU-family	gnl\|CDD\|223776	COG0704, PhoU, Phosphate uptake regulator [Inorganic ion transport and metabolism].	2.76957e-13

>LS483341.1|SQF28606.1|1224204_1225587_+|FeS-assembly-protein-SufB
MPQRDYAFGFHDDIAPLYSTGKGLTEAVVREISAIKKEPQWMLDYRLRSLELFNKLPMPDFGPDLSGIRFEDVIYYQKLSGQPARSWDDVPEEIKRTFDRLGIPEAEKQFLSGAVAQYESEVVYHNMKEEFEKLGIIFTDTDTAVQEYPELVKQYFGTVVSNAEHKFAALNGAVWSGGTFIYVPKNVHCQIPVQTYFRINGENAGQFERSLMIIEEGGSIQYIEGCTAPTYTTNSLHAATVEIIVKKDAFFRYTTIQNWSDNVYNLVTERGTVEEGGTLEWIDGNLGSKVNMKYPCSILNGRNARTSVLSMSFANYGQHLDAGCKVFHNAPKTSSTLISKSVAKDGGKTDYRGQVRFGKNSAGSKSHIECDTILMDGESSSDTIPFNEIHNSNVALEHEAKVSKVSEDQLYYLMSRGISEEEATAMIINGFMEPITKELPMEYAVELNQLINMSMEGSVG
>LS483341.1|SQF28604.1|1221717_1224015_+|pullulanase
MPDYQVLVHYHNPTDDYLSYNIWQWQENQIGKEASFSNFDYFGRSGLVTYQSETNLDYVHLIIKKADWSSQTIDYTIRLLPPHLVTEVWILEGDHQVYYSRQAAITSHYYKYRNPHAFDMAVSSKEFDRHWGYQGSLGSFYQADKTEFKLWAPTAKAVEVVIYKYASNQADIWKTISLKRGRDFSTDHTKNTIGVWQGSISEDLAKRAYQYRVIFDHEEYLTRDPYSQATSPDGKRTAIVTDQERNPLGFQVKQRQEAHWRVKNACQAVIYEMHIRDLSQSESSGVTPAYRGTFLGACQTGTTNGTGQATTFDHIRDLGVNYVQLQPISDRHKDYDENGQVTYNWGYDPQNYNAPETSFSSNPSDPAQAIRDLKTLIQAYHDAGIGVILDVVYNHSYSTFDSPFQASVPDYYYRMNPDGSFQNGTGVGSETASEHEMFRKYMIDSLLYWVKDYNVDGFRFDLMGIHDVETMQIIRDELDKVDPRILTYGEGWDMGTGLLPQDKAKKDNAYQLLDIGFFNDNERDAIKGAEVFGTLKAGFVSGQGTENIIAKAILGSSELGSYLMPNQVVNYVEAHDNYNLHDLLREFHPHDDLETLTKRIELATAMNILMQGLAFMELGQEFSRTKLVGTGPNGQVTQADKERAMNSYNAPDQVNQVDWNLLSKHQDSVNFIRQIIQLKTTRKEFSYSTYEEIYQHVYVRQAQTNSGLIIFEIKDKKHYLVIFNASGTPYRLENANKLKLVVSNNRSKINTEVENLTASVFEILA
>LS483341.1|SQF28603.1|1220738_1221695_+|putative-lipid-kinase
MKDVIKRARLIYNPTSGQEIIKKNIAEVLDVLEDVGYETSAYQTTPEPLSAQKEAERAAKAGFDLIIAAGGDGTINEVVNGVAPLENRPRLAFIPTGTTNDYARALKIPMGKPVEAARIIAKNQTIKMDIGRAFGQKYFINIAAAGTLSELTYRVPSEAKSRLGYFAYVAKGAEMLPRSKFRKVRITHDHGVFEGKISLMFAALTNSIGGFEQVAPDAKLDDGNFTLILVKTAKLFEMLALLIQAINGGQHVTDVNVEYLKTSKLKLEVLDSKEPFMLNLDGEYGGDTPVELEVFHNHLEFFANIDEISDDALCSEKS
>LS483341.1|SQF28600.1|1218782_1220729_+|NAD-dependent-DNA-ligase-LigA
MSELVSLLNRYAHEYYTKDAPSVSDSEYDQLYRELVSLEEQYPDEILPESPTHRVGGKVLDGFEKYQHQYPLYSLQDAFSRAELVAFDERVRKEFPDASYLCELKIDGLSISLAYENGILVAGATRGDGSIGENITENLKRVKDIPLTLPEPLTITVRGECYMPKASFDAINQLRQENGEAEFANPRNAAAGTLRQLDTSVVAKRNLATFLYQKASPTSEATQEDVLEKLSQLGFSVNEKRILASTIDQVWDFIEKVGQERDSLPYEIDGIVIKVNDLAVQEELGFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIADKDIRKGDTVIVYKAGDIIPAVLRVVEGKRVSDEHLDVPSQCPSCQSDLLHFEDEVALRCINPLCPAQIMEGLAHFASRDAMNISGLGPAVVEKLFAKDLVRDVAGIYRLSIEDLLQLENFKEKSANKLYNAIQASKSNSAEKLLFGLGIRHVGSKASRILLEKFHDIPSLAQAEQEEIASIDSLGMVIAKSLHSYFAQEGTQILLKELEEAGVNLAYLGEKVAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGANVAGSVSKKTDLVIAGADAGSKLAKAQELGIEIQDEVWLEQL
>LS483341.1|SQF28598.1|1217516_1217954_-|mesH-protein
MKSLIKKFFDNEILSYLFFGVATTIVSVASRMLCYEVTGNEILATIIGDVLGILFAFATNDTIVFKQERKGWPDRLVKFFTARLATMGLNLLLTFIFVTSFPQIIGQFVNHNIKMVNTIETFIAQVLIIVLNYVFSKLFVFEKKN
>LS483341.1|SQF28596.1|1217062_1217485_-|acetyltransferase
MNLKFENGDSAKREELRNLLRTYNRSKREPSESQALDIYLEDEEGNLIAGLTGETFGNWLEIEYLFVKEDLRGKGIGSKILDQAEKEALVRNCTYSFVNTYQFQAPDFYKKHGYQEVFTLKEYPYSGKRYYFTKDLGPEN
>LS483341.1|SQF28594.1|1216260_1216968_+|B3/4-domain-containing-protein
MNITVEKAFWEVFPEAQISVLVVKGLDNSVDESEDPYFKSLLDKGVKRAEDFILDENFTQNEVIQEWRQAFSKFKTKKGARSSIEALLKRVSQGREFHPINPLVDIYNSVSLSYAVPCGGEDLDKIVGGLHLGKAKGGEAFFPLGAESDAPALPEEIIYYDEEGAVCRCLNWREAQRTMLTEETKNAILVIEAINKEQAVRAQAAMTELQTLIEDYFGIKGEITHLTAEHPNLEI
>LS483341.1|SQF28592.1|1215793_1216243_+|MarR-family-transcriptional-regulator
MSVLREIGIIARALDSIANIEFRDIELARGQYLYLVRIAENPGIIQEELSELLKVDRSTVARSVKKLEAKGLIQQKATKDNKKNKEWFVTEKGEKLYPFILAENNYSEETSLQGFSQAEVKALEKMLVRVRENITGDWEAVKKGQKRNY
>LS483341.1|SQF28590.1|1215012_1215675_+|Uncharacterised-protein
MNSEKNAAIRSEVFKQELASSLLSKKVSTIKKVAKQIRRQRIEGLDQALAEALDFVMTKPRSWEAQHELILTIAATECTSLIPYLEKLVQGNYSATVLYRSLALAIVYLQNKDRKELSYVYSILESGNQNLFAGALLGLNQREVVLSHEEVQDFYSVAKREVYLENFRQVISPIQVLVSMAYLFEDRERQELISYCQELNSAFFSSIITNLNKNKKIPYL
>LS483341.1|SQF28588.1|1214021_1214915_+|ribonuclease-BN-family-protein
MKKIVEKLKQQHFLRAFIGFYDKSEIGITSIAVAYYFLISALPLLLVLANILPYFQVQTDALLNLLNDMLPDSLYPMVAKAVKAVFGQPSSGLLGFSILSALWAFSKCISFLQKAFNKAYGVTKGHGLLRNRLFSFVVSIGLQILLILSMILSVFGRSILTVVYNVFDLDVSFYRQITTITEGLVFLVLFLTLVALYYLLPNVKINKLRYVLPGTIFVVGILFGLLNLFSAYLEAYMNHFINVRFFGSVVVIIIMLWFIIVSKILIIGAILNASIQSCSESEFQLDRIGSFSFKKKD
>LS483341.1|SQF28608.1|1226014_1226281_+|putative-chorismate-mutase
MNLEELRQEINQIDDELVVLLEKRMKLVNQVATYKQETGKAVLDTKREEVILGRVADHVETPAYKDTILATFKDILKNSRAYQEQKKA
>LS483341.1|SQF28610.1|1226277_1226652_+|camphor-resistance-protein-CrcB
MKEVKNSLAICLAAMLGGWLRYLISSLVTFTGHFPLATLLVNYLGTFILVYLVKGYLANKQVSKRFILAISTGFCGGLTTFSSLLLDSIKLLDLGLYTDFILYLVLSIGGSLWIALWAGKKVAL
>LS483341.1|SQF28612.1|1226648_1226975_+|camphor-resistance-protein-CrcB
MIWLMLTACGGGALVRYFLSKVNSRAVLPVGTLMANLLGAFLIGYFYNHVQDKQLYTILVTGFCGGLTTLSTFNAELVALFSNKKKFIHYLILTYCLGFLAIILGIFI
>LS483341.1|SQF28614.1|1227090_1227438_+|50S-ribosomal-protein-L19
MNPLIQSLTEGQLRTDIPAFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKGAGISENYTVRKISNGVGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRALQGKAARIKEIRR
>LS483341.1|SQF28616.1|1228031_1230260_+|cell-wall-surface-anchor-family-protein
MKHFVHNEVFSIRKLKVGLCSVLVAISFLGVQSVFADEAVTSTSQISMNKLYTSTTNSLESSSTNNDDKSTGIDSSTSQLTDSNVDSPLIPNKEYKEDGVNTGTFEDEMKDSPLVSNSALSNSTIKTLEGSLTSNHDSLTDFITTNSKSVSSENEVADTSNSNEVRDSNTALEKGTEVSALSVKDYGAVGDGVSDDRQAIQDTIDAAAKGLGGGKVYFPEGTYLVKEIVFLRSHTHLEVHEKATILNGINIKNHPSIVFMTGLFTDDGDQVEWEPTEDISYSGGTIDMNGALNEERTKAKNLPLINSSGAFAIGNSKNVTISNVTFKDSYQGHAIQIAGSKNVLVDNSRFLGQALPKTMKDGQIISKESIQIEPLTRKGFPYALNDNGQKSENVTIQNSYFGKSEKSGELVTAIGTHYQTATTENPSNIKILNNHFDNMMYAGVRFTGFTDILIKGNRFDKKTKEESEHYRENGAALVNAYSYKNVKDVLDLNKHVTITENVFNIADAKTKAIRVAKDSADYLGKVSDITVTKNIIHNNSQNAEQPNIELLRVSDNLVVSDNIISGGKDGIVIEESAGTITVLNNQLSNLTGNHVSLLKTDFKGTSSDTNNNVGDFNIITENESYKIFSQDSDNHSDNHSDNHVEELKPVVENKNNLANNYSANSVDDKIEKSNHDSDNVVTVEISQKQDDVTNISEVVKVKDNQHALPKTGLNKMAEMVITVIGICLLFGQRSLKRRYEDR
>LS483341.1|SQF28618.1|1230246_1230981_+|Uncharacterised-protein
MKIDRICSIQGSAKENEDSVDYKNQYFWIIDGATDLFNAKDSIGYSVSEVSHLISECLKQYCNDSLSLKKIFELALDDVRKRIKIDKCEFDDYSQLPTFAFIFAKLSGLKLEYIMIGDCVMIVNNQVITDHRVDCLFEQGKFAIKSNHEVDKKTILQNIRKLANKPEGYWIGSLDKSSINHILNGSLEVTSNHIVLMTDGFYDFYTQNSGYSFEELIEIRKKSRNIDPIYGKKDDASILIIEVR
>LS483341.1|SQF28620.1|1230980_1231619_+|PhoU-family
MLRSNFDNEIIELSNNLEDIWDSIIKKYEIIFDTLTEVQKQSIIDNDLVINKAVVEIDMKGTELICLQHPVSSDLRKIIAIVKLSTDIERIGDRIVEIVIVLKNVHAMHEWGALFYELLKIHFELGEYLKRALLWFKKRNYESDEYDYNKKYQLISNLCQKLGDKAEENFLIEPKNVDEAIVFLEVINILDKISHTTQSIYKWLDYQERGVL
>LS483341.1|SQF28623.1|1231635_1233111_+|galactose-1-phosphate-uridylyltransferase
MQTIVDNFVNRVIEYGIYKPMDQIYIKNRVLALIGEEGTDKFSNDSDLKKLKDDLVEIALKNGKIADLAEAKECLGAELMNFIVPLPSRLNDIFWSSYDVSPQEAVEEFYQLSKDSDYIKLSAISKNIAFHTETNYGSLEITINLSKPEKDPKTIAAEKLVKSSNYPKCLLCMENEGYQGRINYPARANHRIIRLELGDEVWGFQYSPYSYFNEHAIFLNSQHVPMAITSKTFEQLLEIVDILPGYFAGSNSDLPISGGSILSHNHYQGGKHIFPMEKAKFEREFLFKDFEDIKAGIIKWPMSVIRLQGENKNRLVELATKILDIWREYSDLDVNIIAKTEDIPHHTVTTIARKVNGRYELDIVLRDNHTTEEYPDGVYHPHQDVQHIKKENIGLIEVMGLAILPPRLKTELEEVEKYLLGKDNEIADYHLEWAVQLKEKYPGLKEEEVHSVVQNEVGQVFARVLEDAGVYKNTQTGHEAFMRFVKSVGIN
>LS483341.1|SQF28625.1|1233123_1234137_+|UDP-glucose-4-epimerase
MAILVTGGAGYIGSHTVVELLNLGKEVVIVDNLSNSSILVLDRIEAITGQRPAFYELDVCDKQGLRKVFEQESIEAAIHFAGYKAVGESVQKPVMYYENNIMSTLALVQVMSEFNVKKIVFSSSATVYGIHNQSPLVETMPTSATNPYGYTKVMLEQILKDVHVADSEWSIALLRYFNPIGAHESGLIGEDPSGIPNNLMPFIAQVAVGKRPELSVFGDDYDTVDGTGVRDYIHVVDLAIGHIKALEKVSEQTDVYIYNLGSGEGTSVLQLVNTFESVNKVPIPYKIVPRRSGDVATCYANADKAYKELNWKTTKTVEDMCRDTWNWQSKNPNGYNK
>LS483341.1|SQF28627.1|1234299_1234956_+|Uncharacterized-protein-conserved-in-bacteria
MKNLTKIKFKENGEFNHFPGNTVVANLYTNSDLMEVVDIIQSRYRELPFIDKFTLTPRDSIHMTVIELLCHENREPEFWSSHLPLDTPLQEIHDYFAKQLEIFPLLNEDIHMRVTEMGNQNILVEPADEKSAKRLEEIRTYVSEKAGVRFPNHDRYQFHISIGYLRVPLTEEENEEFTKVKKELTEVLLEKIPVITVNRIDYTVFEDMRRFVPYCEKF

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Crispr_ID: LS483341_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483341_3

1271072-1272295

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	PILER-CR
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	CRT

18 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LS483341_3

>merge|LS483341|3|1271072-1272295|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCAGAAAAGAAACCAACAATGAAAACTTCAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTGCATGTCTTGAGCGTATAGTCGTCTTTGTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACACATCGTCACCAGCAAGCACAATAGCTTTTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTAACAACGAGTGTATATTCTGCAAGCGAGCGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGAACAGCATCCCAGAATTTCTTAATCTTATGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTCGTTTTGAAAATGACTTCTACAAGTTACCGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTTCTCTGGCGACTGGTTTAACAAGGCTAAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACATAGCCTCAAGTCCGAACTTGCCTTGATAGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAACTTAAGTTTTAACTTACGGTCACGAACTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACAAACATATCAACTGCTTCATTGGACATTACGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACATCCAACAGATCGGCATAGTGGATACTATCGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTTTTGCGTTTTTATTATTACGCTCAAAGCGGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTCTAGGAAAAAAGTGAACAGCGAAGGTCTTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTATAACAAGTACTAACTTAATAATAATCTAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTTTCCATATGCTCCAATTGTGACAGTGTAAGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACCTTCCTCATCTTTACCAACAATAAGGATATGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTGTATCAAGTCAATTGACGATGATAGCAACGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACTATAACCCAGAAAACTATTGAAATCAAGGTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT

>LS483341|3|1|1271072-1272294|PILER-CR
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CCAGAAAAGAAACCAACAATGAAAACTTCAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CTGCATGTCTTGAGCGTATAGTCGTCTTTGT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CACATCGTCACCAGCAAGCACAATAGCTTTT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CTAACAACGAGTGTATATTCTGCAAGCGAGC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CGAACAGCATCCCAGAATTTCTTAATCTTAT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CTCGTTTTGAAAATGACTTCTACAAGTTACC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CTTCTCTGGCGACTGGTTTAACAAGGCTAAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CATAGCCTCAAGTCCGAACTTGCCTTGATAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CAACTTAAGTTTTAACTTACGGTCACGAACT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CAAACATATCAACTGCTTCATTGGACATTAC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CATCCAACAGATCGGCATAGTGGATACTATC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CTTTTGCGTTTTTATTATTACGCTCAAAGCG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CTCTAGGAAAAAAGTGAACAGCGAAGGTCTT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CTATAACAAGTACTAACTTAATAATAATCTA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CTTTCCATATGCTCCAATTGTGACAGTGTAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CCTTCCTCATCTTTACCAACAATAAGGATAT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CTGTATCAAGTCAATTGACGATGATAGCAAC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA	CTATAACCCAGAAAACTATTGAAATCAAGGT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAA

>LS483341|3|3|1271072-1272295|CRISPRCasFinder
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	CAGAAAAGAAACCAACAATGAAAACTTCAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TGCATGTCTTGAGCGTATAGTCGTCTTTGT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	ACATCGTCACCAGCAAGCACAATAGCTTTT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TAACAACGAGTGTATATTCTGCAAGCGAGC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	GAACAGCATCCCAGAATTTCTTAATCTTAT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TCGTTTTGAAAATGACTTCTACAAGTTACC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TTCTCTGGCGACTGGTTTAACAAGGCTAAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	ATAGCCTCAAGTCCGAACTTGCCTTGATAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	AACTTAAGTTTTAACTTACGGTCACGAACT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	AAACATATCAACTGCTTCATTGGACATTAC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	ATCCAACAGATCGGCATAGTGGATACTATC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TTTTGCGTTTTTATTATTACGCTCAAAGCG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TCTAGGAAAAAAGTGAACAGCGAAGGTCTT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TATAACAAGTACTAACTTAATAATAATCTA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TTTCCATATGCTCCAATTGTGACAGTGTAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	CTTCCTCATCTTTACCAACAATAAGGATAT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TGTATCAAGTCAATTGACGATGATAGCAAC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TATAACCCAGAAAACTATTGAAATCAAGGT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT

>LS483341|3|1|1271072-1272295|CRT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	CAGAAAAGAAACCAACAATGAAAACTTCAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TGCATGTCTTGAGCGTATAGTCGTCTTTGT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	ACATCGTCACCAGCAAGCACAATAGCTTTT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TAACAACGAGTGTATATTCTGCAAGCGAGC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	GAACAGCATCCCAGAATTTCTTAATCTTAT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TCGTTTTGAAAATGACTTCTACAAGTTACC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TTCTCTGGCGACTGGTTTAACAAGGCTAAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	ATAGCCTCAAGTCCGAACTTGCCTTGATAG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	AACTTAAGTTTTAACTTACGGTCACGAACT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	AAACATATCAACTGCTTCATTGGACATTAC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	ATCCAACAGATCGGCATAGTGGATACTATC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TTTTGCGTTTTTATTATTACGCTCAAAGCG
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TCTAGGAAAAAAGTGAACAGCGAAGGTCTT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TATAACAAGTACTAACTTAATAATAATCTA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TTTCCATATGCTCCAATTGTGACAGTGTAA
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	CTTCCTCATCTTTACCAACAATAAGGATAT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TGTATCAAGTCAATTGACGATGATAGCAAC
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	TATAACCCAGAAAACTATTGAAATCAAGGT
GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483341.1\|SQF28710.1\|1280144_1281251_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
LS483341.1\|SQF28712.1\|1281268_1281607_+\|Protein-of-uncharacterised-function-(DUF964)	unknown	unknown	gnl\|CDD\|237467
LS483341.1\|SQF28692.1\|1269121_1269988_+\|CRISPR-associated-protein-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LS483341.1\|SQF28708.1\|1278961_1280128_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
LS483341.1\|SQF28680.1\|1261332_1262157_+\|surface-antigen	unknown	unknown	gnl\|CDD\|227596
LS483341.1\|SQF28678.1\|1260187_1261309_+\|CHAP-protein	unknown	unknown	gnl\|CDD\|236304
LS483341.1\|SQF28705.1\|1277805_1278873_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
LS483341.1\|SQF28693.1\|1269984_1270329_+\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LS483341.1\|SQF28704.1\|1276870_1277728_+\|shikimate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
LS483341.1\|SQF28685.1\|1262801_1263137_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|368511
LS483341.1\|SQF28682.1\|1262246_1262498_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483341.1\|SQF28695.1\|1270318_1270981_+\|CRISPR-type-II-A/NMEMI-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LS483341.1\|SQF28687.1\|1263141_1264314_+\|phage-integrase-family-recombinase	unknown	unknown	gnl\|CDD\|271189
LS483341.1\|SQF28702.1\|1276203_1276881_+\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235036
LS483341.1\|SQF28700.1\|1275043_1276207_+\|methyltransferase	unknown	unknown	gnl\|CDD\|224017
LS483341.1\|SQF28699.1\|1272602_1274771_-\|sulfatase	unknown	unknown	gnl\|CDD\|224287
LS483341.1\|SQF28683.1\|1262490_1262736_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379344
LS483341.1\|SQF28714.1\|1281722_1282637_+\|L-2-hydroxyisocaproate-dehydrogenase	unknown	unknown	gnl\|CDD\|133427
LS483341.1\|SQF28689.1\|1264979_1269122_+\|CRISPR-associated-protein,-Csn1-family	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LS483341.1\|SQF28697.1\|1272352_1272556_+\|DNA-binding-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LS483341.1\|SQF28714.1\|1281722_1282637_+\|L-2-hydroxyisocaproate-dehydrogenase	gnl\|CDD\|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	4.74631e-144
LS483341.1\|SQF28712.1\|1281268_1281607_+\|Protein-of-uncharacterised-function-(DUF964)	gnl\|CDD\|237467	PRK13676, PRK13676, YlbF/YmcA family competence regulator.	3.20727e-43
LS483341.1\|SQF28692.1\|1269121_1269988_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.27083e-127
LS483341.1\|SQF28708.1\|1278961_1280128_+\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
LS483341.1\|SQF28680.1\|1261332_1262157_+\|surface-antigen	gnl\|CDD\|227596	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only].	0.000848802
LS483341.1\|SQF28678.1\|1260187_1261309_+\|CHAP-protein	gnl\|CDD\|236304	PRK08581, PRK08581, amidase domain-containing protein.	2.94632e-34
LS483341.1\|SQF28705.1\|1277805_1278873_+\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	0
LS483341.1\|SQF28693.1\|1269984_1270329_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.27812e-48
LS483341.1\|SQF28704.1\|1276870_1277728_+\|shikimate-5-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	1.57222e-114
LS483341.1\|SQF28685.1\|1262801_1263137_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|368511	pfam05595, DUF771, Domain of unknown function (DUF771). Family of uncharacterized ORFs found in Bacteriophage and Lactococcus lactis.	3.02058e-22
LS483341.1\|SQF28695.1\|1270318_1270981_+\|CRISPR-type-II-A/NMEMI-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	6.5346e-110
LS483341.1\|SQF28687.1\|1263141_1264314_+\|phage-integrase-family-recombinase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.62502e-31
LS483341.1\|SQF28710.1\|1280144_1281251_+\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	6.0514e-162
LS483341.1\|SQF28700.1\|1275043_1276207_+\|methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	1.92221e-141
LS483341.1\|SQF28699.1\|1272602_1274771_-\|sulfatase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	6.86171e-153
LS483341.1\|SQF28683.1\|1262490_1262736_+\|Uncharacterised-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	2.6413e-06
LS483341.1\|SQF28689.1\|1264979_1269122_+\|CRISPR-associated-protein,-Csn1-family	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LS483341.1\|SQF28702.1\|1276203_1276881_+\|3-dehydroquinate-dehydratase	gnl\|CDD\|235036	PRK02412, aroD, type I 3-dehydroquinate dehydratase.	3.46601e-116

>LS483341.1|SQF28695.1|1270318_1270981_+|CRISPR-type-II-A/NMEMI-associated-protein-Csn2
MKINFPLLDEPLAIENATFLVLEDQLTFSTIVKQFYQYTDDGELKLFDRNLKALKESELLVITDVLGYNLNSPAMLKLIHADLENQLNDKPEVKSMIEKLVATITELLAFECLENELDLEYDEITILELINALGVKVETLSDTPFEKMLEIIQVFKYLSKKKLLVFINATAYLSEDELINLIEYIQLNQLRVLFVEPRKVYDFPQYVLDQDYFLNPENMV
>LS483341.1|SQF28693.1|1269984_1270329_+|CRISPR-associated-protein-Cas2
MSYRYMRMILMFDMPVDTVEERKAYRKFRKFLIDEGFIMHQFSIYSKLLLNNSANNAMIERLKTHNPKKGNITLLTVTEKQFSRMIYLNGERNTSVANSDARLVFLGEEPRDED
>LS483341.1|SQF28692.1|1269121_1269988_+|CRISPR-associated-protein-Cas1
MGWRTVVVNTHSKLSYKNNHLIFKDASRTELIHLSEVDILLLETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAYLMSYYGRHDSSLQLSRQIAWREDVKAQVWTTIIAQKILNQALYLGNCGFLEKSQSVIDLYHGLDLFDPSNREGHAARIYFNTLFGNDFSREQESDINAALDYGYTLILSMFAREIVLSGCMTQFGLKHANQFNQFNLASDIMEPFRPIIDRIVYENRSSSFVKIKRELFAIFSDTFHYNDKDMYLSNIVSDYTKKVIQALNQPEKGVPEFRI
>LS483341.1|SQF28689.1|1264979_1269122_+|CRISPR-associated-protein,-Csn1-family
MKKGYSIGLDIGTNSVGFAVITDDYKVPSKKMKVLGNTDKRFIKKNLIGALLFDEGTTAEARRLKRTARRRYTRRKNRLRYLQEIFSEEMSKVDSSFFHRLDDSFLIPEDKRESKYPIFATLEEEKEYHKKFPTIYHLRKHLADSKEKADLRLIYLALAHMIKYRGHFLYEDTFDIKNNDIQKIFNEFISIYDNAFEGSSLSGQNAQVEAIFTDKISKSAKRERVLKLFPDEKSTGLFSEFLKLIVGNQADFKKHFDLEDKAPLQFSKDTYDEDLENLLGQIGDDFADLFVAAKKLYDAILLSGILTVTDPSTKAPLSASMIERYENHQNDLVVLKQFIKNNLPENYVEVFSDDSKNGYAGYVGVDSKIRKRNAKLATEEEFYKYLKNILNNVKGADYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMNAILRRQGEHYPFLKENREKIEKILTFRIPYYVGPLARGNRDFAWLTRNSDQAIRPWNFEEIVDKASSAEDFINKMTNYDLYLPEEKVLPKHSLLYEKFAVYNELTKVKFIAEGLRDYQFLDSGQKKQIVNQLFKEKRKVTEKDIIHYLHTVDGYDGIELKGIEKQFNASLSTYHDLLKIIKDKEFMDDPKNEEILENIVHTLTIFEDREMIKQRLAQYDSLFDEKVIKSLTRRHYTGWGKLSAMLINGIRDKQTGKTILDYLIDDAYYNRNFMQLINDDGLSFKEIIQKAQVVGKTDDVKQVVQELPGSPAIKKGILQSIKIVDELVKIMRHNPESIVIEMARENQTTARGKKNSQQRYKRIEDALKNLAPGLDSNILKEHPTDNVQLQNDRLFLYYLQNGKDMYTGEALDINQLSSYDIDHIIPQAFIKDDSFDNRVLTSSKDNRGKSDNVPSIEVVQKRKAFWQQLLDSKLISERKFNNLTKAERGGLDERDKVGFIKRQLVETRQITKHVAQILDARYNTEVNEKDKKNRTVKIITLKSNLVSNFRKEFRLYKVREINDYHHAHDAYLNAVVAKAILKKYPKLEPEFVYGEYQKYDLKRYISRSKDPKEVEKATEKYFFYSNLLNFFKEEVHYADGTIVKRENIEYSKDTGEIAWNKEKDFAIIKKVLSLPQVNIVKKREVQTGGFSKESILPKGNSDKLIPRKTKDILWDTTKYGGFDSPVIAYSILLIADIEKGKAKKLKTVKTLVGITIMEKAAFEDNPITFLENKGYHNVRKENILCLPKYSLFELENGRRRLLASAKELQKGNEIVLPVYLTTLLYHSKNVHKLDEPGHLEYIQKHRNEFKDLLNLVSEFSQKYVLADANLEKIKSLYADNEQADIEILANSFINLLTFTALGAPAAFKFFGKDIDRKRYTTVSEILNATLIHQSITGLYETRIDLSKLGED
>LS483341.1|SQF28687.1|1263141_1264314_+|phage-integrase-family-recombinase
MVMIAIQKGVSVASYRQRGKNKLWDYRIFGKNGKLIASNSGFKTKREAMNEAQEKERELFKSNHSVRFNSKSTLYELWKDWYDLVIAPSEKADATKGTYFFRGNLIEKMFSDIPAVKISHKEYQLRLNEYGEKVTKDHLRRVNADIRSVVRFSKRNGLYMNDFTEDVKIYGQSPGEVDDKYIHSIEDYKILLNYLKENMNYRVSVIPFLLYLLFKTGFRVGEGMAVCWSDIDFEKKTIKTYRRFAGDRQIFVPPKTNTSIREIPIDDDLIFVLKSLKDEQDKVLFDREELKKHDLVFYDRRYKLPTNSGLNKCLKVFLSELGIGSQTMTATAGRHTYGSYLLAKGVDIWVVSRLLGHKDIQQIIQTYGHALKEVIDKEYDLVRELMLVKE
>LS483341.1|SQF28685.1|1262801_1263137_+|Uncharacterized-protein-conserved-in-bacteria
MKEQKQVFNIEVPIPADMVLISRSEYLDLLQKEEVGQWWTIDKVEELLSIRKTKLINDILLNPSIKNELDIEKNKDGFVLYPKSKGSPYRFLARKTREYFDKNYQKILLML
>LS483341.1|SQF28683.1|1262490_1262736_+|Uncharacterised-protein
MPKYSFLKYGIEIRPNEHNHKGQMAHIHIYIHGEEVGSMFLNGELRDGKLKSKDMKIVRQYVLENADELQALWNEYQNSAY
>LS483341.1|SQF28682.1|1262246_1262498_+|Uncharacterised-protein
MIKEFGVTNLEVTKEDISKNPNNPILRMYDDEELIGTFSILTGEVVENLDLADYDIRFAQKQIELNRDNYLETWKDYVGLLHA
>LS483341.1|SQF28680.1|1261332_1262157_+|surface-antigen
MNKKIVTLACVTLLSGFVAGVNADELSLGGSVDSKEDTAGLVVAEQPKEENPAVVPAEQTKGENLDLGGKTEKEPSQDNAGVVVEHTTPSEQPKEEKPKEDKPSENLGKESEKEPSKDNTGVVVEPTTPSEKPKEDQPKEEQPKADTQKEADPKVQEDKKKAEDNVGVKESDDPKPLNVTKEDIQEQPIETNTGHKVVSTNQGKVVVETSEGDYAEKEPYEVGAVKQKDGTIALKDKEGQLKVLPNTGTASTIFTTIWGFVGLVATVIGKRKFN
>LS483341.1|SQF28678.1|1260187_1261309_+|CHAP-protein
MKNQIKNQVKKYVVAFLLSNLTTILPIILILILVMGAVVAGSSGSSDSTIGKRTRLTAQEVAQKANISVERAEDVIKILNWQLSKEKFTLEGASGSLANAERESDFDPKLTNPSGGVAGYFQWSGWNGNTINGDRWAKASSRTLDSTVELELMSYELNHGYKKVKDYMQKATDPFESAKYWSEHYEGVLLSDGQTKLEKLEKDSKKWYEVFKGTIESDGSSGGNAIAGSLDVPAGQVAMDIPSGYSIDKEITKDGYITQSYPYGECTWYVFNRAKDFGINFDPYMGNGQDWAHKSGYEVSNTPTKHSAVSFQGRQAGGHPTYGHVAFVEDVKDDGSILISECNFVQSGQGTGITNYRVFTADQAKEFLYVTGK
>LS483341.1|SQF28697.1|1272352_1272556_+|DNA-binding-protein
MRKQIEKLLNSDISTSAIAKGAGVPWSTVADLRKGKTSIDKMALLTAEKLNDFAEELEAEKDDEFYN
>LS483341.1|SQF28699.1|1272602_1274771_-|sulfatase
MSTRLGFVLTLLCFYWLKTMWAYTVDFNLDIQGFYQAFLAFVNPIPLGLLFIGLALYFKRSTIFYGFSIFVYILLFIWLFSNAVYYREFSDFVTVNTMMASSSVSAGLGEAALGLFRPWDIIYLIDFPILGYLMYKKLIRVDHRPFNKRASFAITALSTMLFTANLFLAEIDRPQLLTRGFSNYYVVRALGLPAFLGYSGNQTYQANKERSKASAEDLKPVEEYIQNHYAEPNKDYFGIAKGRNVIYVHLESFQQFLIDYKLQADGKSYEVTPFLNSLYHSNSTLAFSNVFNQVKAGKTSDAETMIETGLFGLNQGSFMVNYGGTNTQQAAPFILSKNGDYTSAVFHGNAGSFWNRNTAYKQWGYNYFFDASYFTKQDDTNSFQYGLNDKIMLKDSIKYLERLQQPFYVKYITVSNHYPYTTSLIGDEIGFPLAKTKDETINGYFATANYLDSSVKALFDYLKKSGLYDNSIIVLYGDHFGISQTRNPNLAPLVGKTSETWSNYDNAMMQRVPYMVVIPGMDKGKIIDTYGGQVDMLPTLEHLLGIDSKNYLQVGQDMLSTQHQQITAFRSSNNFVTPKYTSFNGRTYYTQTGEEITNPDETIKKELDDIRNAANTQLKISDAIQTGDLIRFYEGNDLGKVDVKKYSYNHSFKALKKIEEEKGDQSTSLYSQRKGESTIDLFDAPSYRALHPEQFESTSSSEDSSESSSDSSSSSSSSSSKQ
>LS483341.1|SQF28700.1|1275043_1276207_+|methyltransferase
MKKLTVSRYKEEKIRQGALLLEKEDFPELSFDHQAVELVSSQGKFLGCGYISKQNKGLGWLVSKQKVDFDKDFFISLFEKAKEKRRFYRQAEDITAYRLFNQEGDGFAGLTVDQYGDYALFSWYNPFVFSLKEEILQAFQEVFPELMGAYEKIRFKGLDYESANVYGAEAPEVFTVLENGVAYQVFLNDGLMTGIFLDQHEVRASLVDGLALGKSLLNMFSYTAAFSVAAAMGGASQTTSVDLAKRSRELSEAHFQANGLTLDNHRFVVMDVFDYFKYAKRHGLSYDVIVLDPPSFARNKKQTFSVAKDYHKLIKESLEILNPKGVLIASTNASNVTRAKFKKEIEKGFAGKHHRYIKEYGLPADFSYNKKDESSNYLKVFTIKVEE
>LS483341.1|SQF28702.1|1276203_1276881_+|3-dehydroquinate-dehydratase
MKLVVSVTPRNLEEAQQIDAQRFVDADLIEWRADFLEKEEILKVAPAIFEKFAGRELIFTLRTKDEGGHIQLSDDEYVEMIKKVAQLYQPDYVDFEYFSHKDKIDEMLEFPNLVLSYHNFEETPENMMEILSELTSLTPKAVKVSVMANSGQDVLDLMNYTRGFKTLNPEQEYVTISMGRVGRISRIASDLTGSSWSFASLDEATAPGQISLSSMKKIRDILNEN
>LS483341.1|SQF28704.1|1276870_1277728_+|shikimate-5-dehydrogenase
MKIDGHTRLAAVIAKPIKHSISPFIHNMAYDLTDTNAVYLAFEVDRENLEQAVENIRLHQMLGANISMPYKQEVITYLDELDESALLIGAVNTVVNQNGRLIGYNTDGLGFFRSLSNFHIKGKNLTILGAGGAASAIIGQAVLDGVEKVCVFDLRDRLAGHQEKIEQLSRRLGHPIQLLAVEDLVALSDAVNQSDLFINATGLGMDGKSLPIPSDFAFPKGLLVADMTYCPAETPFLRLAREQGLQTVNGLGMLLYQAEKAFELMTGKKMPSEEIKKALLEKLEI
>LS483341.1|SQF28705.1|1277805_1278873_+|3-dehydroquinate-synthase
MKLNVNLPHHPYDIIIENGALSQAGNWLSQLWQPQKLVIITDNRVARLYAEKVKLSLEAAGFKVFTFDFLEGEASKNLTTVNKAYEFLAKVGLTRSDGIVALGGGVVGDLAGFVASTYMRGIHFVQIPTSLTAQVDSSIGGKTGVNTPWAKNMVGTFTQPDGVLIDPQVLQTLGKRELIEGMGEVVKYGLIEDKELWDELSEMDGSPESILEHAESIIYHSCDVKRKIVVEDELDNGVRLYLNFGHTIGHAIEATAGYGQVMHGEAVAIGMVQVSRVAEKQGLMPAGITEDIIHMCQKFGLPVDYQPWNENALYQALTHDKKARGNSIKLVLVPELGSASIHQIPLEEMKEFLKK
>LS483341.1|SQF28708.1|1278961_1280128_+|chorismate-synthase
MRYLTAGESHGPRLTAIIEGVPAGLPLTAEYINAELKRRQGGYGRGARMKIESDQVEITSGVRHGLTMGGPITLNVTNLDHQKWLEIMSVADVDEKKKGLRKITKPRPGHADLVGGMKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLEEIGVEVASHIVTFGGIDIDVPNNLTVTEIKERAAQSEVSIVNPEREEEIKAYIDQIKKDGDTIGGVVETVVGGVPVGLGSYVQWDKKLDAKIAQGVVSINAFKGVEFGVGFEAGRLKGSQVMDEILWSEEDGFTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYKPLMSVDIETHEPYKATVERSDPTALPAAGVVMESVVATVLATEVLEKFSSDNLEELKDAVARHREFVKNF
>LS483341.1|SQF28710.1|1280144_1281251_+|prephenate-dehydrogenase
MERKTVYIAGLGLIGASLALGIRRAHPEIEILGYNRSEESRRVALERGMVDRVTDDFAVFSPLADVIILAVPIKQTIAFIKDLAELDLKENVIISDAGSTKAEIVAAAEKYLQNKPVRFVGAHPMAGSHKTGAKAAHVTLFENAYYIFTPSSLTKPGTLEEMKDLLSGLQARFIQVDAAEHDRVTSQISHFPHILASSLMEQTAAYSQEHELTQSFAAGGFRDMTRIAESEPGMWTSILLTNPQAILERLEDFKKQLDKVAAAIEDKDETAIWEFFDRGRQSRKQMEIHKRAGVDSFYDLFIEVPDEEGAILSVLELLRGISVVNIRINEENREDTHGILQITFKNRQDLEKSAKIVRENTRYQVFLN
>LS483341.1|SQF28712.1|1281268_1281607_+|Protein-of-uncharacterised-function-(DUF964)
MSNIYDLANELNRTFRELPEYKAVLESKVAIDADSEAKSLFDDYIAFQGKIQQLMQTGQMPTPELQEEMKSFGEKIQANAIVTEFFTKQQQLSVYLSDIERIVFEPIQDLMK
>LS483341.1|SQF28714.1|1281722_1282637_+|L-2-hydroxyisocaproate-dehydrogenase
MSRKVAIIGMGNVGATVAHGLIAKGAFDDYVLIDTNEAKVKADALDFQDAAANLNHHANITVNSYEALADADVIISALGNIKLQDNPNADRFVELPFTSKEVIEVSKKIKEVGFKGILIAITNPVDVVTSLYQHYTGLPKERVIGTGTLLDTARMKRAVGVRFEVDPRSVYGYNLGEHGNSQFTAWSQVRVKGQPISKLTSEEVLEEIGTEAMRGGHTVFYGKKYTSYGIASAAIRLALAVISDAHEELPVTNYYAPLDTYLSYPALVGRSGIIEQLQLTLTEEEEAKLARSAQFIQEKFAEHI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483341_3	3.26\|1271570\|30\|LS483341\|CRISPRCasFinder,CRT	1271570-1271599	30	MK448881	Streptococcus phage Javan240, complete genome	6397-6426	0	1.0
LS483341_3	3.8\|1271569\|31\|LS483341\|PILER-CR	1271569-1271599	31	MK448881	Streptococcus phage Javan240, complete genome	6397-6427	1	0.968
LS483341_3	3.31\|1271900\|30\|LS483341\|CRISPRCasFinder,CRT	1271900-1271929	30	MK448882	Streptococcus phage Javan242, complete genome	11095-11124	1	0.967
LS483341_3	3.35\|1272164\|30\|LS483341\|CRISPRCasFinder,CRT	1272164-1272193	30	MK448714	Streptococcus phage Javan241, complete genome	27953-27982	1	0.967
LS483341_3	3.35\|1272164\|30\|LS483341\|CRISPRCasFinder,CRT	1272164-1272193	30	MK448383	Streptococcus satellite phage Javan248, complete genome	9480-9509	1	0.967
LS483341_3	3.13\|1271899\|31\|LS483341\|PILER-CR	1271899-1271929	31	MK448882	Streptococcus phage Javan242, complete genome	11094-11124	2	0.935
LS483341_3	3.15\|1272031\|31\|LS483341\|PILER-CR	1272031-1272061	31	MK448714	Streptococcus phage Javan241, complete genome	10220-10250	2	0.935
LS483341_3	3.17\|1272163\|31\|LS483341\|PILER-CR	1272163-1272193	31	MK448714	Streptococcus phage Javan241, complete genome	27952-27982	2	0.935
LS483341_3	3.17\|1272163\|31\|LS483341\|PILER-CR	1272163-1272193	31	MK448383	Streptococcus satellite phage Javan248, complete genome	9479-9509	2	0.935
LS483341_3	3.21\|1271240\|30\|LS483341\|CRISPRCasFinder,CRT	1271240-1271269	30	NC_010945	Streptococcus phage PH15, complete genome	9451-9480	2	0.933
LS483341_3	3.29\|1271768\|30\|LS483341\|CRISPRCasFinder,CRT	1271768-1271797	30	MK448882	Streptococcus phage Javan242, complete genome	24275-24304	2	0.933
LS483341_3	3.33\|1272032\|30\|LS483341\|CRISPRCasFinder,CRT	1272032-1272061	30	MK448714	Streptococcus phage Javan241, complete genome	10220-10249	2	0.933
LS483341_3	3.3\|1271239\|31\|LS483341\|PILER-CR	1271239-1271269	31	NC_010945	Streptococcus phage PH15, complete genome	9451-9481	3	0.903
LS483341_3	3.11\|1271767\|31\|LS483341\|PILER-CR	1271767-1271797	31	MK448882	Streptococcus phage Javan242, complete genome	24275-24305	3	0.903
LS483341_1	1.1\|825568\|27\|LS483341\|CRISPRCasFinder	825568-825594	27	NZ_CP008942	Candidatus Paracaedibacter acanthamoebae isolate PRA3 plasmid, complete sequence	3845-3871	5	0.815
LS483341_1	1.1\|825568\|27\|LS483341\|CRISPRCasFinder	825568-825594	27	NZ_KX774387	Providencia rettgeri strain 30905 plasmid pC131, complete sequence	63801-63827	5	0.815
LS483341_3	3.14\|1271965\|31\|LS483341\|PILER-CR	1271965-1271995	31	MK448671	Streptococcus phage Javan115, complete genome	5457-5487	5	0.839
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	MH937504	Streptococcus phage CHPC1091, complete genome	23270-23299	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	AF020798	Streptococcus thermophilus bacteriophage lysogeny module, integrase homolog (int), putative host cell surface-exposed lipoprotein, putative metallo-proteinase, repressor, Cro-like regulatory protein, and P1-antirepressor homolog genes, complete cds	1124-1153	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	KY705290	Streptococcus phage P9903, complete genome	22453-22482	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	KY705255	Streptococcus phage P0095, complete genome	21367-21396	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	MH937459	Streptococcus phage CHPC595, complete genome	23388-23417	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	MH937473	Streptococcus phage CHPC929, complete genome	27997-28026	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	NC_000871	Streptococcus phage Sfi19, complete genome	25366-25395	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	KY705289	Streptococcus phage P9902, complete genome	22154-22183	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	KT717083	Streptococcus phage 73, complete genome	23582-23611	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	AF158601	Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds	2027-2056	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	NC_002072	Streptococcus phage DT1, complete genome	23352-23381	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	AF085222	Streptococcus thermophilus bacteriophage DT1, complete genome	23352-23381	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	HE861935	Streptococcus phage TP-J34 complete genome	43970-43999	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	AF115102	Streptococcus thermophilus bacteriophage Sfi19, complete genome	25366-25395	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	NC_002214	Streptococcus thermophilus bacteriophage Sfi11, complete genome	27746-27775	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	MH892354	Streptococcus phage SW3, complete genome	23265-23294	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	MH937508	Streptococcus phage CHPC1156, complete genome	22904-22933	5	0.833
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	MH937469	Streptococcus phage CHPC919, complete genome	23686-23715	5	0.833
LS483341_3	3.32\|1271966\|30\|LS483341\|CRISPRCasFinder,CRT	1271966-1271995	30	MK448671	Streptococcus phage Javan115, complete genome	5458-5487	5	0.833
LS483341_3	3.5\|1271371\|31\|LS483341\|PILER-CR	1271371-1271401	31	MF042360	Pseudomonas phage Phabio, complete genome	79980-80010	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	MH937504	Streptococcus phage CHPC1091, complete genome	23269-23299	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	AF020798	Streptococcus thermophilus bacteriophage lysogeny module, integrase homolog (int), putative host cell surface-exposed lipoprotein, putative metallo-proteinase, repressor, Cro-like regulatory protein, and P1-antirepressor homolog genes, complete cds	1123-1153	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	KY705290	Streptococcus phage P9903, complete genome	22452-22482	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	KY705255	Streptococcus phage P0095, complete genome	21366-21396	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	MH937459	Streptococcus phage CHPC595, complete genome	23387-23417	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	MH937473	Streptococcus phage CHPC929, complete genome	27996-28026	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	NC_000871	Streptococcus phage Sfi19, complete genome	25365-25395	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	KY705289	Streptococcus phage P9902, complete genome	22153-22183	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	KT717083	Streptococcus phage 73, complete genome	23581-23611	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	AF158601	Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds	2026-2056	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	NC_002072	Streptococcus phage DT1, complete genome	23351-23381	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	AF085222	Streptococcus thermophilus bacteriophage DT1, complete genome	23351-23381	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	HE861935	Streptococcus phage TP-J34 complete genome	43969-43999	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	AF115102	Streptococcus thermophilus bacteriophage Sfi19, complete genome	25365-25395	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	NC_002214	Streptococcus thermophilus bacteriophage Sfi11, complete genome	27745-27775	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	MH892354	Streptococcus phage SW3, complete genome	23264-23294	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	MH937508	Streptococcus phage CHPC1156, complete genome	22903-22933	6	0.806
LS483341_3	3.6\|1271437\|31\|LS483341\|PILER-CR	1271437-1271467	31	MH937469	Streptococcus phage CHPC919, complete genome	23685-23715	6	0.806
LS483341_3	3.18\|1272229\|31\|LS483341\|PILER-CR	1272229-1272259	31	NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	83547-83577	6	0.806
LS483341_3	3.21\|1271240\|30\|LS483341\|CRISPRCasFinder,CRT	1271240-1271269	30	MN856096	Myoviridae sp. isolate 84, complete genome	6662-6691	6	0.8
LS483341_3	3.23\|1271372\|30\|LS483341\|CRISPRCasFinder,CRT	1271372-1271401	30	MF042360	Pseudomonas phage Phabio, complete genome	79980-80009	6	0.8
LS483341_3	3.23\|1271372\|30\|LS483341\|CRISPRCasFinder,CRT	1271372-1271401	30	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	141950-141979	6	0.8
LS483341_3	3.36\|1272230\|30\|LS483341\|CRISPRCasFinder,CRT	1272230-1272259	30	MN617835	Enterobacter phage prasa_myo, complete genome	157538-157567	6	0.8
LS483341_3	3.36\|1272230\|30\|LS483341\|CRISPRCasFinder,CRT	1272230-1272259	30	MG999954	Enterobacter phage myPSH1140, complete genome	157538-157567	6	0.8
LS483341_3	3.36\|1272230\|30\|LS483341\|CRISPRCasFinder,CRT	1272230-1272259	30	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	198056-198085	6	0.8
LS483341_3	3.36\|1272230\|30\|LS483341\|CRISPRCasFinder,CRT	1272230-1272259	30	NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	83547-83576	6	0.8
LS483341_3	3.1\|1271107\|31\|LS483341\|PILER-CR	1271107-1271137	31	MT811961	Vibrio phage vB_pir03, complete genome	260413-260443	7	0.774
LS483341_3	3.5\|1271371\|31\|LS483341\|PILER-CR	1271371-1271401	31	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	141950-141980	7	0.774
LS483341_3	3.8\|1271569\|31\|LS483341\|PILER-CR	1271569-1271599	31	NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	351579-351609	7	0.774
LS483341_3	3.11\|1271767\|31\|LS483341\|PILER-CR	1271767-1271797	31	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	379793-379823	7	0.774
LS483341_3	3.18\|1272229\|31\|LS483341\|PILER-CR	1272229-1272259	31	MN617835	Enterobacter phage prasa_myo, complete genome	157537-157567	7	0.774
LS483341_3	3.18\|1272229\|31\|LS483341\|PILER-CR	1272229-1272259	31	MG999954	Enterobacter phage myPSH1140, complete genome	157537-157567	7	0.774
LS483341_3	3.18\|1272229\|31\|LS483341\|PILER-CR	1272229-1272259	31	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	198055-198085	7	0.774
LS483341_3	3.19\|1271108\|30\|LS483341\|CRISPRCasFinder,CRT	1271108-1271137	30	MT811961	Vibrio phage vB_pir03, complete genome	260414-260443	7	0.767
LS483341_3	3.21\|1271240\|30\|LS483341\|CRISPRCasFinder,CRT	1271240-1271269	30	MN693976	Marine virus AFVG_250M247, complete genome	9717-9746	7	0.767
LS483341_3	3.26\|1271570\|30\|LS483341\|CRISPRCasFinder,CRT	1271570-1271599	30	NC_008757	Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence	351580-351609	7	0.767
LS483341_3	3.28\|1271702\|30\|LS483341\|CRISPRCasFinder,CRT	1271702-1271731	30	MN694282	Marine virus AFVG_250M297, complete genome	18163-18192	7	0.767
LS483341_3	3.29\|1271768\|30\|LS483341\|CRISPRCasFinder,CRT	1271768-1271797	30	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	379794-379823	7	0.767
LS483341_3	3.36\|1272230\|30\|LS483341\|CRISPRCasFinder,CRT	1272230-1272259	30	GU323318	Enterobacteria phage CC31, complete genome	148279-148308	7	0.767
LS483341_3	3.11\|1271767\|31\|LS483341\|PILER-CR	1271767-1271797	31	NZ_CP021334	Marinobacter salarius strain HL2708#2 plasmid pHL2708Z5, complete sequence	144053-144083	8	0.742
LS483341_3	3.14\|1271965\|31\|LS483341\|PILER-CR	1271965-1271995	31	MK448886	Streptococcus phage Javan254, complete genome	6780-6810	8	0.742
LS483341_3	3.18\|1272229\|31\|LS483341\|PILER-CR	1272229-1272259	31	GU323318	Enterobacteria phage CC31, complete genome	148278-148308	8	0.742
LS483341_3	3.19\|1271108\|30\|LS483341\|CRISPRCasFinder,CRT	1271108-1271137	30	MN694637	Marine virus AFVG_250M580, complete genome	34325-34354	8	0.733
LS483341_3	3.21\|1271240\|30\|LS483341\|CRISPRCasFinder,CRT	1271240-1271269	30	NC_016936	Saprospira grandis str. Lewin plasmid, complete sequence	3438-3467	8	0.733
LS483341_3	3.29\|1271768\|30\|LS483341\|CRISPRCasFinder,CRT	1271768-1271797	30	NZ_CP021334	Marinobacter salarius strain HL2708#2 plasmid pHL2708Z5, complete sequence	144054-144083	8	0.733
LS483341_3	3.32\|1271966\|30\|LS483341\|CRISPRCasFinder,CRT	1271966-1271995	30	MK448886	Streptococcus phage Javan254, complete genome	6781-6810	8	0.733
LS483341_3	3.32\|1271966\|30\|LS483341\|CRISPRCasFinder,CRT	1271966-1271995	30	KF156338	Synechococcus phage S-MbCM7, complete genome	186925-186954	8	0.733
LS483341_3	3.34\|1272098\|30\|LS483341\|CRISPRCasFinder,CRT	1272098-1272127	30	NZ_CP044460	Acinetobacter indicus strain B18 plasmid pB18-5, complete sequence	17802-17831	8	0.733
LS483341_3	3.1\|1271107\|31\|LS483341\|PILER-CR	1271107-1271137	31	MN694637	Marine virus AFVG_250M580, complete genome	34325-34355	9	0.71
LS483341_3	3.3\|1271239\|31\|LS483341\|PILER-CR	1271239-1271269	31	NC_016936	Saprospira grandis str. Lewin plasmid, complete sequence	3437-3467	9	0.71
LS483341_3	3.14\|1271965\|31\|LS483341\|PILER-CR	1271965-1271995	31	KF156338	Synechococcus phage S-MbCM7, complete genome	186924-186954	9	0.71
LS483341_3	3.16\|1272097\|31\|LS483341\|PILER-CR	1272097-1272127	31	NZ_CP044460	Acinetobacter indicus strain B18 plasmid pB18-5, complete sequence	17802-17832	9	0.71
LS483341_3	3.24\|1271438\|30\|LS483341\|CRISPRCasFinder,CRT	1271438-1271467	30	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	179169-179198	9	0.7
LS483341_3	3.27\|1271636\|30\|LS483341\|CRISPRCasFinder,CRT	1271636-1271665	30	MN694155	Marine virus AFVG_250M1019, complete genome	22222-22251	9	0.7
LS483341_3	3.30\|1271834\|30\|LS483341\|CRISPRCasFinder,CRT	1271834-1271863	30	MK249871	Vibrio phage LP.2, complete genome	10722-10751	9	0.7
LS483341_3	3.30\|1271834\|30\|LS483341\|CRISPRCasFinder,CRT	1271834-1271863	30	MG592508	Vibrio phage 1.137.O._10N.261.46.B5, partial genome	33150-33179	9	0.7
LS483341_3	3.30\|1271834\|30\|LS483341\|CRISPRCasFinder,CRT	1271834-1271863	30	MG592423	Vibrio phage 1.039.O._10N.286.55.A2, partial genome	34081-34110	9	0.7
LS483341_3	3.12\|1271833\|31\|LS483341\|PILER-CR	1271833-1271863	31	MK249871	Vibrio phage LP.2, complete genome	10721-10751	10	0.677
LS483341_3	3.12\|1271833\|31\|LS483341\|PILER-CR	1271833-1271863	31	MG592508	Vibrio phage 1.137.O._10N.261.46.B5, partial genome	33150-33180	10	0.677
LS483341_3	3.12\|1271833\|31\|LS483341\|PILER-CR	1271833-1271863	31	MG592423	Vibrio phage 1.039.O._10N.286.55.A2, partial genome	34081-34111	10	0.677

1. spacer 3.26|1271570|30|LS483341|CRISPRCasFinder,CRT matches to MK448881 (Streptococcus phage Javan240, complete genome) position: , mismatch: 0, identity: 1.0

atagcctcaagtccgaacttgccttgatag	CRISPR spacer
atagcctcaagtccgaacttgccttgatag	Protospacer
******************************

2. spacer 3.8|1271569|31|LS483341|PILER-CR matches to MK448881 (Streptococcus phage Javan240, complete genome) position: , mismatch: 1, identity: 0.968

catagcctcaagtccgaacttgccttgatag	CRISPR spacer
aatagcctcaagtccgaacttgccttgatag	Protospacer
 ******************************

3. spacer 3.31|1271900|30|LS483341|CRISPRCasFinder,CRT matches to MK448882 (Streptococcus phage Javan242, complete genome) position: , mismatch: 1, identity: 0.967

tctaggaaaaaagtgaacagcgaaggtctt	CRISPR spacer
tctaggaagaaagtgaacagcgaaggtctt	Protospacer
********.*********************

4. spacer 3.35|1272164|30|LS483341|CRISPRCasFinder,CRT matches to MK448714 (Streptococcus phage Javan241, complete genome) position: , mismatch: 1, identity: 0.967

tgtatcaagtcaattgacgatgatagcaac	CRISPR spacer
tgtatcaagtcaattaacgatgatagcaac	Protospacer
***************.**************

5. spacer 3.35|1272164|30|LS483341|CRISPRCasFinder,CRT matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 1, identity: 0.967

tgtatcaagtcaattgacgatgatagcaac	CRISPR spacer
tgtatcaagtcaattgacgatgatcgcaac	Protospacer
************************ *****

6. spacer 3.13|1271899|31|LS483341|PILER-CR matches to MK448882 (Streptococcus phage Javan242, complete genome) position: , mismatch: 2, identity: 0.935

ctctaggaaaaaagtgaacagcgaaggtctt	CRISPR spacer
atctaggaagaaagtgaacagcgaaggtctt	Protospacer
 ********.*********************

7. spacer 3.15|1272031|31|LS483341|PILER-CR matches to MK448714 (Streptococcus phage Javan241, complete genome) position: , mismatch: 2, identity: 0.935

ctttccatatgctccaattgtgacagtgtaa	CRISPR spacer
cttgccataagctccaattgtgacagtgtaa	Protospacer
*** ***** *********************

8. spacer 3.17|1272163|31|LS483341|PILER-CR matches to MK448714 (Streptococcus phage Javan241, complete genome) position: , mismatch: 2, identity: 0.935

ctgtatcaagtcaattgacgatgatagcaac	CRISPR spacer
ttgtatcaagtcaattaacgatgatagcaac	Protospacer
.***************.**************

9. spacer 3.17|1272163|31|LS483341|PILER-CR matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 2, identity: 0.935

ctgtatcaagtcaattgacgatgatagcaac	CRISPR spacer
ttgtatcaagtcaattgacgatgatcgcaac	Protospacer
.************************ *****

10. spacer 3.21|1271240|30|LS483341|CRISPRCasFinder,CRT matches to NC_010945 (Streptococcus phage PH15, complete genome) position: , mismatch: 2, identity: 0.933

acatcgtcaccagcaagcacaatagctttt	CRISPR spacer
acatcatcaccagcaagcacaatggctttt	Protospacer
*****.*****************.******

11. spacer 3.29|1271768|30|LS483341|CRISPRCasFinder,CRT matches to MK448882 (Streptococcus phage Javan242, complete genome) position: , mismatch: 2, identity: 0.933

atccaacagatcggcatagtggatactatc	CRISPR spacer
atctaacagatcagcatagtggatactatc	Protospacer
***.********.*****************

12. spacer 3.33|1272032|30|LS483341|CRISPRCasFinder,CRT matches to MK448714 (Streptococcus phage Javan241, complete genome) position: , mismatch: 2, identity: 0.933

tttccatatgctccaattgtgacagtgtaa	CRISPR spacer
ttgccataagctccaattgtgacagtgtaa	Protospacer
** ***** *********************

13. spacer 3.3|1271239|31|LS483341|PILER-CR matches to NC_010945 (Streptococcus phage PH15, complete genome) position: , mismatch: 3, identity: 0.903

cacatcgtcaccagcaagcacaatagctttt	CRISPR spacer
aacatcatcaccagcaagcacaatggctttt	Protospacer
 *****.*****************.******

14. spacer 3.11|1271767|31|LS483341|PILER-CR matches to MK448882 (Streptococcus phage Javan242, complete genome) position: , mismatch: 3, identity: 0.903

catccaacagatcggcatagtggatactatc	CRISPR spacer
aatctaacagatcagcatagtggatactatc	Protospacer
 ***.********.*****************

15. spacer 1.1|825568|27|LS483341|CRISPRCasFinder matches to NZ_CP008942 (Candidatus Paracaedibacter acanthamoebae isolate PRA3 plasmid, complete sequence) position: , mismatch: 5, identity: 0.815

cttgactttcatttttgaagtgttaga	CRISPR spacer
atacaatttcaattttgaagtgttaga	Protospacer
 *  * ***** ***************

16. spacer 1.1|825568|27|LS483341|CRISPRCasFinder matches to NZ_KX774387 (Providencia rettgeri strain 30905 plasmid pC131, complete sequence) position: , mismatch: 5, identity: 0.815

cttgactttcatttttgaagtgttaga	CRISPR spacer
ttgtactttgatttttgaagtgttaaa	Protospacer
.*  ***** ***************.*

17. spacer 3.14|1271965|31|LS483341|PILER-CR matches to MK448671 (Streptococcus phage Javan115, complete genome) position: , mismatch: 5, identity: 0.839

ctataacaagtactaacttaataataatcta	CRISPR spacer
ctataacaaatactaatttaataataattac	Protospacer
*********.******.***********.

18. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to MH937504 (Streptococcus phage CHPC1091, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaatgacttctacaaattgcc	Protospacer
* . ********************.**.**

19. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to AF020798 (Streptococcus thermophilus bacteriophage lysogeny module, integrase homolog (int), putative host cell surface-exposed lipoprotein, putative metallo-proteinase, repressor, Cro-like regulatory protein, and P1-antirepressor homolog genes, complete cds) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaatgacttctacaaattgcc	Protospacer
* . ********************.**.**

20. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to KY705290 (Streptococcus phage P9903, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaacgacttctacaaattacc	Protospacer
* . ********.***********.*****

21. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaacgacttctacaaattacc	Protospacer
* . ********.***********.*****

22. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to MH937459 (Streptococcus phage CHPC595, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaacgacttctacaaattacc	Protospacer
* . ********.***********.*****

23. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to MH937473 (Streptococcus phage CHPC929, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaatgacttctacaaattgcc	Protospacer
* . ********************.**.**

24. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to NC_000871 (Streptococcus phage Sfi19, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaatgacttctacaaattgcc	Protospacer
* . ********************.**.**

25. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to KY705289 (Streptococcus phage P9902, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaacgacttctacaaattacc	Protospacer
* . ********.***********.*****

26. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to KT717083 (Streptococcus phage 73, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaacgacttctacaaattacc	Protospacer
* . ********.***********.*****

27. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to AF158601 (Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaatgacttctacaaattgcc	Protospacer
* . ********************.**.**

28. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to NC_002072 (Streptococcus phage DT1, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaacgacttctacaaattacc	Protospacer
* . ********.***********.*****

29. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to AF085222 (Streptococcus thermophilus bacteriophage DT1, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaacgacttctacaaattacc	Protospacer
* . ********.***********.*****

30. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to HE861935 (Streptococcus phage TP-J34 complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaatgacttctacaaattgcc	Protospacer
* . ********************.**.**

31. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to AF115102 (Streptococcus thermophilus bacteriophage Sfi19, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaatgacttctacaaattgcc	Protospacer
* . ********************.**.**

32. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to NC_002214 (Streptococcus thermophilus bacteriophage Sfi11, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaatgacttctacaaattgcc	Protospacer
* . ********************.**.**

33. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to MH892354 (Streptococcus phage SW3, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaacgacttctacaaattacc	Protospacer
* . ********.***********.*****

34. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to MH937508 (Streptococcus phage CHPC1156, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaacgacttctacaaattacc	Protospacer
* . ********.***********.*****

35. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to MH937469 (Streptococcus phage CHPC919, complete genome) position: , mismatch: 5, identity: 0.833

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
taaatttgaaaatgacttctacaaattgcc	Protospacer
* . ********************.**.**

36. spacer 3.32|1271966|30|LS483341|CRISPRCasFinder,CRT matches to MK448671 (Streptococcus phage Javan115, complete genome) position: , mismatch: 5, identity: 0.833

tataacaagtactaacttaataataatcta	CRISPR spacer
tataacaaatactaatttaataataattac	Protospacer
********.******.***********.

37. spacer 3.5|1271371|31|LS483341|PILER-CR matches to MF042360 (Pseudomonas phage Phabio, complete genome) position: , mismatch: 6, identity: 0.806

cgaacagcatcccagaatttcttaatcttat	CRISPR spacer
cgaacagcatcacagtatttcttaagagttt	Protospacer
*********** *** *********   * *

38. spacer 3.6|1271437|31|LS483341|PILER-CR matches to MH937504 (Streptococcus phage CHPC1091, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaatgacttctacaaattgcc	Protospacer
.* . ********************.**.**

39. spacer 3.6|1271437|31|LS483341|PILER-CR matches to AF020798 (Streptococcus thermophilus bacteriophage lysogeny module, integrase homolog (int), putative host cell surface-exposed lipoprotein, putative metallo-proteinase, repressor, Cro-like regulatory protein, and P1-antirepressor homolog genes, complete cds) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaatgacttctacaaattgcc	Protospacer
.* . ********************.**.**

40. spacer 3.6|1271437|31|LS483341|PILER-CR matches to KY705290 (Streptococcus phage P9903, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaacgacttctacaaattacc	Protospacer
.* . ********.***********.*****

41. spacer 3.6|1271437|31|LS483341|PILER-CR matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaacgacttctacaaattacc	Protospacer
.* . ********.***********.*****

42. spacer 3.6|1271437|31|LS483341|PILER-CR matches to MH937459 (Streptococcus phage CHPC595, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaacgacttctacaaattacc	Protospacer
.* . ********.***********.*****

43. spacer 3.6|1271437|31|LS483341|PILER-CR matches to MH937473 (Streptococcus phage CHPC929, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaatgacttctacaaattgcc	Protospacer
.* . ********************.**.**

44. spacer 3.6|1271437|31|LS483341|PILER-CR matches to NC_000871 (Streptococcus phage Sfi19, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaatgacttctacaaattgcc	Protospacer
.* . ********************.**.**

45. spacer 3.6|1271437|31|LS483341|PILER-CR matches to KY705289 (Streptococcus phage P9902, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaacgacttctacaaattacc	Protospacer
.* . ********.***********.*****

46. spacer 3.6|1271437|31|LS483341|PILER-CR matches to KT717083 (Streptococcus phage 73, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaacgacttctacaaattacc	Protospacer
.* . ********.***********.*****

47. spacer 3.6|1271437|31|LS483341|PILER-CR matches to AF158601 (Streptococcus thermophilus bacteriophage SFi18 lysin, gp111, gp183, gp47, gp54, gp71, gp145, gp69, gp40, gp229, gp157, gp233, putative helicase, gp151, gp271, putative primase, gp143, gp106, gp89, gp57, gp51, gp66, gp192, putative DNA binding protein, gp99, and gp235 genes, complete cds) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaatgacttctacaaattgcc	Protospacer
.* . ********************.**.**

48. spacer 3.6|1271437|31|LS483341|PILER-CR matches to NC_002072 (Streptococcus phage DT1, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaacgacttctacaaattacc	Protospacer
.* . ********.***********.*****

49. spacer 3.6|1271437|31|LS483341|PILER-CR matches to AF085222 (Streptococcus thermophilus bacteriophage DT1, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaacgacttctacaaattacc	Protospacer
.* . ********.***********.*****

50. spacer 3.6|1271437|31|LS483341|PILER-CR matches to HE861935 (Streptococcus phage TP-J34 complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaatgacttctacaaattgcc	Protospacer
.* . ********************.**.**

51. spacer 3.6|1271437|31|LS483341|PILER-CR matches to AF115102 (Streptococcus thermophilus bacteriophage Sfi19, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaatgacttctacaaattgcc	Protospacer
.* . ********************.**.**

52. spacer 3.6|1271437|31|LS483341|PILER-CR matches to NC_002214 (Streptococcus thermophilus bacteriophage Sfi11, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaatgacttctacaaattgcc	Protospacer
.* . ********************.**.**

53. spacer 3.6|1271437|31|LS483341|PILER-CR matches to MH892354 (Streptococcus phage SW3, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaacgacttctacaaattacc	Protospacer
.* . ********.***********.*****

54. spacer 3.6|1271437|31|LS483341|PILER-CR matches to MH937508 (Streptococcus phage CHPC1156, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaacgacttctacaaattacc	Protospacer
.* . ********.***********.*****

55. spacer 3.6|1271437|31|LS483341|PILER-CR matches to MH937469 (Streptococcus phage CHPC919, complete genome) position: , mismatch: 6, identity: 0.806

ctcgttttgaaaatgacttctacaagttacc	CRISPR spacer
ttaaatttgaaaatgacttctacaaattgcc	Protospacer
.* . ********************.**.**

56. spacer 3.18|1272229|31|LS483341|PILER-CR matches to NC_015498 (Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence) position: , mismatch: 6, identity: 0.806

ctataacccagaaaactattgaaatcaaggt	CRISPR spacer
caacaacccaaaaaacaattgaaatcaggtt	Protospacer
* *.******.***** **********.* *

57. spacer 3.21|1271240|30|LS483341|CRISPRCasFinder,CRT matches to MN856096 (Myoviridae sp. isolate 84, complete genome) position: , mismatch: 6, identity: 0.8

acatcgtcaccagcaagcacaatagctttt	CRISPR spacer
gcgttgtcaccagcaagcacaatagccgta	Protospacer
.*.*.*********************. *

58. spacer 3.23|1271372|30|LS483341|CRISPRCasFinder,CRT matches to MF042360 (Pseudomonas phage Phabio, complete genome) position: , mismatch: 6, identity: 0.8

gaacagcatcccagaatttcttaatcttat	CRISPR spacer
gaacagcatcacagtatttcttaagagttt	Protospacer
********** *** *********   * *

59. spacer 3.23|1271372|30|LS483341|CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 6, identity: 0.8

gaacagcatcccagaatttcttaatcttat	CRISPR spacer
ggacaacatctcagaatttcttaattattt	Protospacer
*.***.****.**************. * *

60. spacer 3.36|1272230|30|LS483341|CRISPRCasFinder,CRT matches to MN617835 (Enterobacter phage prasa_myo, complete genome) position: , mismatch: 6, identity: 0.8

tataacccagaaaactattgaaatcaaggt	CRISPR spacer
cattacccagaaaactattgacatcacttt	Protospacer
.** ***************** ****   *

61. spacer 3.36|1272230|30|LS483341|CRISPRCasFinder,CRT matches to MG999954 (Enterobacter phage myPSH1140, complete genome) position: , mismatch: 6, identity: 0.8

tataacccagaaaactattgaaatcaaggt	CRISPR spacer
cattacccagaaaactattgacatcacttt	Protospacer
.** ***************** ****   *

62. spacer 3.36|1272230|30|LS483341|CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 6, identity: 0.8

tataacccagaaaactattg--aaatcaaggt	CRISPR spacer
tatatcgcagaaaactattgaaaaattgag--	Protospacer
**** * *************  ****..**

63. spacer 3.36|1272230|30|LS483341|CRISPRCasFinder,CRT matches to NC_015498 (Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence) position: , mismatch: 6, identity: 0.8

tataacccagaaaactattgaaatcaaggt	CRISPR spacer
aacaacccaaaaaacaattgaaatcaggtt	Protospacer
 *.******.***** **********.* *

64. spacer 3.1|1271107|31|LS483341|PILER-CR matches to MT811961 (Vibrio phage vB_pir03, complete genome) position: , mismatch: 7, identity: 0.774

ccagaaaagaaaccaacaatgaaaacttcaa	CRISPR spacer
ctaatggagaaaccaaccatgaaaactttaa	Protospacer
*.*. ..********** **********.**

65. spacer 3.5|1271371|31|LS483341|PILER-CR matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 7, identity: 0.774

cgaacagcatcccagaatttcttaatcttat	CRISPR spacer
aggacaacatctcagaatttcttaattattt	Protospacer
 *.***.****.**************. * *

66. spacer 3.8|1271569|31|LS483341|PILER-CR matches to NC_008757 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence) position: , mismatch: 7, identity: 0.774

catagcctcaagtccgaacttgccttgatag	CRISPR spacer
caaagcctcaagtcccaacttgccgagcgcg	Protospacer
** ************ ********  *   *

67. spacer 3.11|1271767|31|LS483341|PILER-CR matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 7, identity: 0.774

catccaacagatcggcatagtggatactatc	CRISPR spacer
cttccaacacatcggcatagtgcatgcgtac	Protospacer
* ******* ************ **.*   *

68. spacer 3.18|1272229|31|LS483341|PILER-CR matches to MN617835 (Enterobacter phage prasa_myo, complete genome) position: , mismatch: 7, identity: 0.774

ctataacccagaaaactattgaaatcaaggt	CRISPR spacer
acattacccagaaaactattgacatcacttt	Protospacer
 .** ***************** ****   *

69. spacer 3.18|1272229|31|LS483341|PILER-CR matches to MG999954 (Enterobacter phage myPSH1140, complete genome) position: , mismatch: 7, identity: 0.774

ctataacccagaaaactattgaaatcaaggt	CRISPR spacer
acattacccagaaaactattgacatcacttt	Protospacer
 .** ***************** ****   *

70. spacer 3.18|1272229|31|LS483341|PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 7, identity: 0.774

ctataacccagaaaactattg--aaatcaaggt	CRISPR spacer
ttatatcgcagaaaactattgaaaaattgag--	Protospacer
.**** * *************  ****..**

71. spacer 3.19|1271108|30|LS483341|CRISPRCasFinder,CRT matches to MT811961 (Vibrio phage vB_pir03, complete genome) position: , mismatch: 7, identity: 0.767

cagaaaagaaaccaacaatgaaaacttcaa	CRISPR spacer
taatggagaaaccaaccatgaaaactttaa	Protospacer
.*. ..********** **********.**

72. spacer 3.21|1271240|30|LS483341|CRISPRCasFinder,CRT matches to MN693976 (Marine virus AFVG_250M247, complete genome) position: , mismatch: 7, identity: 0.767

acatcgtcaccagcaagcacaatagctttt	CRISPR spacer
gaagcgtcaccagcaagcacaaaagtcctt	Protospacer
. * ****************** **...**

73. spacer 3.26|1271570|30|LS483341|CRISPRCasFinder,CRT matches to NC_008757 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence) position: , mismatch: 7, identity: 0.767

atagcctcaagtccgaacttgccttgatag	CRISPR spacer
aaagcctcaagtcccaacttgccgagcgcg	Protospacer
* ************ ********  *   *

74. spacer 3.28|1271702|30|LS483341|CRISPRCasFinder,CRT matches to MN694282 (Marine virus AFVG_250M297, complete genome) position: , mismatch: 7, identity: 0.767

aaacatatcaactgcttcattggacattac	CRISPR spacer
aaacatatcaactgcttcattaattatgtt	Protospacer
*********************.. .**  .

75. spacer 3.29|1271768|30|LS483341|CRISPRCasFinder,CRT matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 7, identity: 0.767

atccaacagatcggcatagtggatactatc	CRISPR spacer
ttccaacacatcggcatagtgcatgcgtac	Protospacer
 ******* ************ **.*   *

76. spacer 3.36|1272230|30|LS483341|CRISPRCasFinder,CRT matches to GU323318 (Enterobacteria phage CC31, complete genome) position: , mismatch: 7, identity: 0.767

tataacccagaaaactattgaaatcaaggt	CRISPR spacer
cactacccagaaaactattgacatcacttt	Protospacer
.*. ***************** ****   *

77. spacer 3.11|1271767|31|LS483341|PILER-CR matches to NZ_CP021334 (Marinobacter salarius strain HL2708#2 plasmid pHL2708Z5, complete sequence) position: , mismatch: 8, identity: 0.742

catccaacagatcggcatagtggatactatc	CRISPR spacer
catccaactgctcggcatagtggagggttgt	Protospacer
******** * ************* . *  .

78. spacer 3.14|1271965|31|LS483341|PILER-CR matches to MK448886 (Streptococcus phage Javan254, complete genome) position: , mismatch: 8, identity: 0.742

ctataacaagtactaacttaataataatcta	CRISPR spacer
cactaataaatactaacttaataataaatac	Protospacer
*  ***.**.***************** .

79. spacer 3.18|1272229|31|LS483341|PILER-CR matches to GU323318 (Enterobacteria phage CC31, complete genome) position: , mismatch: 8, identity: 0.742

ctataacccagaaaactattgaaatcaaggt	CRISPR spacer
acactacccagaaaactattgacatcacttt	Protospacer
 .*. ***************** ****   *

80. spacer 3.19|1271108|30|LS483341|CRISPRCasFinder,CRT matches to MN694637 (Marine virus AFVG_250M580, complete genome) position: , mismatch: 8, identity: 0.733

cagaaaagaaaccaacaatgaaaacttcaa	CRISPR spacer
cagaaaggaaactaacaatgaaagaaaaca	Protospacer
******.*****.**********.     *

81. spacer 3.21|1271240|30|LS483341|CRISPRCasFinder,CRT matches to NC_016936 (Saprospira grandis str. Lewin plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

acatcgtcaccagcaagcacaatagctttt	CRISPR spacer
gcgggcccaccagaaagcacaatagctttg	Protospacer
.*.   .****** ***************

82. spacer 3.29|1271768|30|LS483341|CRISPRCasFinder,CRT matches to NZ_CP021334 (Marinobacter salarius strain HL2708#2 plasmid pHL2708Z5, complete sequence) position: , mismatch: 8, identity: 0.733

atccaacagatcggcatagtggatactatc	CRISPR spacer
atccaactgctcggcatagtggagggttgt	Protospacer
******* * ************* . *  .

83. spacer 3.32|1271966|30|LS483341|CRISPRCasFinder,CRT matches to MK448886 (Streptococcus phage Javan254, complete genome) position: , mismatch: 8, identity: 0.733

tataacaagtactaacttaataataatcta	CRISPR spacer
actaataaatactaacttaataataaatac	Protospacer
  ***.**.***************** .

84. spacer 3.32|1271966|30|LS483341|CRISPRCasFinder,CRT matches to KF156338 (Synechococcus phage S-MbCM7, complete genome) position: , mismatch: 8, identity: 0.733

tataacaagtactaacttaataataatcta	CRISPR spacer
attgctgaggactaccttaataataatcta	Protospacer
  *. ..** **** ***************

85. spacer 3.34|1272098|30|LS483341|CRISPRCasFinder,CRT matches to NZ_CP044460 (Acinetobacter indicus strain B18 plasmid pB18-5, complete sequence) position: , mismatch: 8, identity: 0.733

cttcctcatctttaccaacaataaggatat	CRISPR spacer
ggctcgtatctttaacaacaataaggagat	Protospacer
  ..* .******* ************ **

86. spacer 3.1|1271107|31|LS483341|PILER-CR matches to MN694637 (Marine virus AFVG_250M580, complete genome) position: , mismatch: 9, identity: 0.71

ccagaaaagaaaccaacaatgaaaacttcaa	CRISPR spacer
acagaaaggaaactaacaatgaaagaaaaca	Protospacer
 ******.*****.**********.     *

87. spacer 3.3|1271239|31|LS483341|PILER-CR matches to NC_016936 (Saprospira grandis str. Lewin plasmid, complete sequence) position: , mismatch: 9, identity: 0.71

cacatcgtcaccagcaagcacaatagctttt	CRISPR spacer
tgcgggcccaccagaaagcacaatagctttg	Protospacer
..*.   .****** ***************

88. spacer 3.14|1271965|31|LS483341|PILER-CR matches to KF156338 (Synechococcus phage S-MbCM7, complete genome) position: , mismatch: 9, identity: 0.71

ctataacaagtactaacttaataataatcta	CRISPR spacer
tattgctgaggactaccttaataataatcta	Protospacer
.  *. ..** **** ***************

89. spacer 3.16|1272097|31|LS483341|PILER-CR matches to NZ_CP044460 (Acinetobacter indicus strain B18 plasmid pB18-5, complete sequence) position: , mismatch: 9, identity: 0.71

ccttcctcatctttaccaacaataaggatat	CRISPR spacer
aggctcgtatctttaacaacaataaggagat	Protospacer
   ..* .******* ************ **

90. spacer 3.24|1271438|30|LS483341|CRISPRCasFinder,CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 9, identity: 0.7

tcgttttgaaaatgacttctacaagttacc	CRISPR spacer
tcgttttgaaaatgatttctaatcttctat	Protospacer
***************.*****    *.  .

91. spacer 3.27|1271636|30|LS483341|CRISPRCasFinder,CRT matches to MN694155 (Marine virus AFVG_250M1019, complete genome) position: , mismatch: 9, identity: 0.7

aacttaagttttaacttacggtcacgaact	CRISPR spacer
cgtgtgagtttgaacttacggtcacgatta	Protospacer
 .. *.***** *************** .

92. spacer 3.30|1271834|30|LS483341|CRISPRCasFinder,CRT matches to MK249871 (Vibrio phage LP.2, complete genome) position: , mismatch: 9, identity: 0.7

ttttgcgtttttattattacgctcaaagcg	CRISPR spacer
ctttgcgtttttcttgttacgctctgccat	Protospacer
.*********** **.******** .

93. spacer 3.30|1271834|30|LS483341|CRISPRCasFinder,CRT matches to MG592508 (Vibrio phage 1.137.O._10N.261.46.B5, partial genome) position: , mismatch: 9, identity: 0.7

ttttgcgtttttattattacgctcaaagcg	CRISPR spacer
ctttgcgtttttcttgttacgctcggccat	Protospacer
.*********** **.********..

94. spacer 3.30|1271834|30|LS483341|CRISPRCasFinder,CRT matches to MG592423 (Vibrio phage 1.039.O._10N.286.55.A2, partial genome) position: , mismatch: 9, identity: 0.7

ttttgcgtttttattattacgctcaaagcg	CRISPR spacer
ctttgcgtttttcttgttacgctcggccat	Protospacer
.*********** **.********..

95. spacer 3.12|1271833|31|LS483341|PILER-CR matches to MK249871 (Vibrio phage LP.2, complete genome) position: , mismatch: 10, identity: 0.677

cttttgcgtttttattattacgctcaaagcg	CRISPR spacer
gctttgcgtttttcttgttacgctctgccat	Protospacer
 .*********** **.******** .

96. spacer 3.12|1271833|31|LS483341|PILER-CR matches to MG592508 (Vibrio phage 1.137.O._10N.261.46.B5, partial genome) position: , mismatch: 10, identity: 0.677

cttttgcgtttttattattacgctcaaagcg	CRISPR spacer
gctttgcgtttttcttgttacgctcggccat	Protospacer
 .*********** **.********..

97. spacer 3.12|1271833|31|LS483341|PILER-CR matches to MG592423 (Vibrio phage 1.039.O._10N.286.55.A2, partial genome) position: , mismatch: 10, identity: 0.677

cttttgcgtttttattattacgctcaaagcg	CRISPR spacer
gctttgcgtttttcttgttacgctcggccat	Protospacer
 .*********** **.********..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

186278 : 250265

Streptococcus_phage(42.86%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF26640.1\|186278_187196_-\|protease	protease	NA	NA	NA	NA
SQF26646.1\|187541_188420_+	ribosome-associated GTPase	NA	NA	NA	NA
SQF26657.1\|188437_189097_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
SQF26665.1\|189089_189722_+	thiamine pyrophosphokinase	NA	NA	NA	NA
SQF26673.1\|189723_190980_+	competence-induced protein Ccs50	NA	NA	NA	NA
SQF26676.1\|190969_191911_+	cmp-binding-factor 1	NA	NA	NA	NA
SQF26687.1\|191977_192823_+	pur operon repressor	NA	NA	NA	NA
SQF26697.1\|192837_193377_+	Uncharacterised protein	NA	NA	NA	NA
SQF26706.1\|193621_194035_+	30S ribosomal protein S12	NA	NA	NA	NA
SQF26712.1\|194054_194525_+	30S ribosomal protein S7	NA	NA	NA	NA
SQF26718.1\|194942_197024_+	elongation factor G	E4ZFJ7	Streptococcus_phage	1.1e-62	28.7
SQF26726.1\|197256_198267_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
SQF26734.1\|198513_203262_+	glycosyl hydrolase family LPXTG cell wall surface protein	NA	NA	NA	NA
SQF26740.1\|203548_204748_+	phosphoglycerate kinase	NA	NA	NA	NA
SQF26748.1\|204930_209667_+	streptococcal surface protein A	NA	NA	NA	NA
SQF26755.1\|209915_210566_+	putative peptidoglycan hydrolase and general stress protein	NA	NA	NA	NA
SQF26761.1\|210716_211247_+	membrane protein	NA	NA	NA	NA
SQF26766.1\|211535_211901_+	MerR family transcriptional regulator	NA	NA	NA	NA
SQF26775.1\|211930_213277_+	glutamate-ammonia ligase	NA	NA	NA	NA
SQF26781.1\|213330_213735_+	histone acetyltransferase HPA2	NA	NA	NA	NA
SQF26786.1\|213969_215304_+	proton-dependent manganese transporter group C beta 2	NA	NA	NA	NA
SQF26788.1\|215512_216079_+\|transposase	transposase, IS5 family	A0A1X9I5T2	Streptococcus_phage	9.9e-80	75.5
SQF26790.1\|216180_216963_+\|transposase	ISSag8, transposase	A0A1X9I5T2	Streptococcus_phage	2.3e-103	76.7
SQF26792.1\|216990_218673_-	metallo-beta-lactamase superfamily protein 1	NA	NA	NA	NA
SQF26794.1\|218676_218907_-	Protein of uncharacterised function DUF1447	NA	NA	NA	NA
SQF26795.1\|219183_219870_+	glycoprotein endopeptidase	NA	NA	NA	NA
SQF26797.1\|219866_220319_+	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA
SQF26799.1\|220308_221319_+\|protease	glycoprotease family protein	NA	NA	NA	NA
SQF26801.1\|221328_222024_+	transport protein-like protein	NA	NA	NA	NA
SQF26803.1\|222013_222346_+	integral membrane protein	NA	NA	NA	NA
SQF26805.1\|222454_223201_+	methyltransferase	NA	NA	NA	NA
SQF26806.1\|223528_223774_-	Uncharacterised protein	NA	NA	NA	NA
SQF26809.1\|223862_224171_+	putative lipoprotein	NA	NA	NA	NA
SQF26811.1\|224271_225012_+	MerR family transcriptional regulator	NA	NA	NA	NA
SQF26812.1\|225067_226243_-	flavoprotein	A0A2H4PQX1	Staphylococcus_phage	1.5e-16	61.3
SQF26816.1\|226510_227005_+	DNA-binding protein	NA	NA	NA	NA
SQF26819.1\|227060_228821_+	glycerophosphoryl diester phosphodiesterase family protein	I6XE30	Staphylococcus_phage	4.9e-08	24.8
SQF26821.1\|228862_229162_-	hypothetical cytosolic protein	NA	NA	NA	NA
SQF26824.1\|229353_229761_+	putative lipoprotein	NA	NA	NA	NA
SQF26826.1\|229793_232073_-	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA
SQF26828.1\|232176_233064_+	glycerol uptake facilitator protein-like protein	M1HQB9	Paramecium_bursaria_Chlorella_virus	7.9e-15	25.1
SQF26831.1\|233202_234483_+	membrane protein	NA	NA	NA	NA
SQF26833.1\|234610_235348_+	proteinase	NA	NA	NA	NA
SQF26835.1\|235344_236280_+	beta-lactamase-like protein	NA	NA	NA	NA
SQF26837.1\|236409_237288_+	mevalonate kinase	NA	NA	NA	NA
SQF26839.1\|237269_238217_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
SQF26841.1\|238206_239226_+	phosphomevalonate kinase	NA	NA	NA	NA
SQF26845.1\|239209_240214_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA
SQF26847.1\|240254_241529_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
SQF26850.1\|241525_242704_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
SQF26852.1\|242891_243347_-	membrane protein	NA	NA	NA	NA
SQF26860.1\|243351_244110_-	membrane spanning protein	NA	NA	NA	NA
SQF26871.1\|244247_246563_-	pyruvate formate-lyase	A0A2P0VNR5	Tetraselmis_virus	1.2e-115	33.2
SQF26883.1\|246811_247876_+	DNA polymerase IV	NA	NA	NA	NA
SQF26889.1\|248087_248414_+	Uncharacterised protein	NA	NA	NA	NA
SQF26899.1\|248731_249526_+\|protease	CAAX amino protease	NA	NA	NA	NA
SQF26903.1\|249515_250265_+\|protease	CAAX amino protease	NA	NA	NA	NA

DBSCAN-SWA_2

1047611 : 1052366

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF28170.1\|1047611_1048475_-	YitT family protein	M1Q1P6	Streptococcus_phage	2.0e-95	61.3
SQF28172.1\|1048728_1049367_+	thymidylate kinase	M1PSC7	Streptococcus_phage	1.2e-76	66.5
SQF28173.1\|1049363_1050263_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.0e-82	54.8
SQF28175.1\|1050277_1050601_+	DNA replication intiation control protein YabA	M1PFV3	Streptococcus_phage	1.5e-32	71.0
SQF28177.1\|1050603_1051458_+	tetrapyrrole methylase family protein	M1PLC5	Streptococcus_phage	4.5e-100	65.8
SQF28178.1\|1051520_1052003_+	methylated-DNA-[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.5e-55	63.3
SQF28180.1\|1052012_1052366_+	ArsC family transcription regulator	M1PLC0	Streptococcus_phage	7.9e-35	59.0

DBSCAN-SWA_3

1990953 : 1998415

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF29721.1\|1990953_1991448_-	phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	6.1e-17	34.0
SQF29722.1\|1991437_1991977_-	methyltransferase	NA	NA	NA	NA
SQF29723.1\|1992058_1992547_-	Uncharacterised protein	NA	NA	NA	NA
SQF29724.1\|1992729_1993407_+	putative transcriptional repressor	Q6DMX1	Streptococcus_phage	1.2e-52	46.1
SQF29725.1\|1993411_1994827_+	ImpB/MucB/SamB family protein	M1Q231	Streptococcus_phage	7.3e-172	63.2
SQF29726.1\|1994823_1995198_+	Uncharacterised protein	A0A1B0RXA8	Streptococcus_phage	6.2e-14	36.6
SQF29727.1\|1995175_1995469_+	Uncharacterised protein	NA	NA	NA	NA
SQF29728.1\|1995540_1997124_-	Uncharacterised protein	V5US45	Oenococcus_phage	4.8e-23	31.0
SQF29729.1\|1997194_1998415_-	cytosine-specific methyltransferase	V5URQ5	Oenococcus_phage	4.1e-131	58.7

DBSCAN-SWA_4

2092626 : 2102428

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF29811.1\|2092626_2094438_-	extracellular polysaccharide biosynthesis	A0A1V0SAI8	Catovirus	1.0e-24	28.5
SQF29812.1\|2094456_2095152_-	putative autophosphorylating protein tyrosine kinase	A0A1X9I5D6	Streptococcus_phage	1.3e-81	68.4
SQF29813.1\|2095161_2095857_-	MPA1 family polysaccharide export protein	A0A1X9I5E1	Streptococcus_phage	1.1e-61	57.4
SQF29814.1\|2095887_2096619_-	wzh/putative phosphotyrosine-protein phosphatase	NA	NA	NA	NA
SQF29815.1\|2096622_2098083_-	transcriptional regulator	A0A1X9I5X1	Streptococcus_phage	2.7e-145	63.4
SQF29816.1\|2098356_2098956_-	organic radical activating chaperone	A0A0C5K925	Enterococcus_phage	6.2e-56	59.1
SQF29817.1\|2098952_2099471_-	acetyltransferase	NA	NA	NA	NA
SQF29818.1\|2099480_2099984_-	acetyltransferase	NA	NA	NA	NA
SQF29819.1\|2099998_2100142_-	Uncharacterised protein	NA	NA	NA	NA
SQF29820.1\|2100223_2102428_-	anaerobic ribonucleoside triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	3.9e-281	65.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483341

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection