CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483346	Streptococcus sanguinis strain NCTC11085 genome assembly, chromosome: 1	2 crisprs	WYL,DEDDh,csa3,DinG,csm6,cas3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483346_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483346_1

289049-289161

Orphan

Consensus_repeat	Method
CTTAATGAGACAAGCCGTGGGCGCAGTCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LS483346_1

>merge|LS483346|1|289049-289161|CRISPRCasFinder
CTTAATGAGACAAGCCGTGGGCGCAGTCGAATTTAGAGGCATTGATGCAGTTTGAGTTTTAGCGAGAACTACGTTCCGCAAAAACTTAATGAGACAATCCGTGGGCGCAGTCG

>LS483346|1|1|289049-289161|CRISPRCasFinder
CTTAATGAGACAAGCCGTGGGCGCAGTCG	AATTTAGAGGCATTGATGCAGTTTGAGTTTTAGCGAGAACTACGTTCCGCAAAAA
CTTAATGAGACAATCCGTGGGCGCAGTCG

Protein	Signature genes	Signature genes Name	Protein_function
LS483346.1\|SQF33832.1\|287652_288063_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483346.1\|SQF33840.1\|295283_297134_+\|prolyl-tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
LS483346.1\|SQF33836.1\|291596_291932_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235822
LS483346.1\|SQF33844.1\|302850_304749_+\|putative-RuBisCo-expression-protein-CbbX	unknown	unknown	gnl\|CDD\|163057
LS483346.1\|SQF33826.1\|283957_284242_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483346.1\|SQF33829.1\|285392_285755_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483346.1\|SQF33831.1\|287342_287663_+\|Putative-EsaC-protein-analog-(Listeria-type-3)	unknown	unknown	gnl\|CDD\|379364
LS483346.1\|SQF33835.1\|289442_291419_+\|putative-transketolase	unknown	unknown	gnl\|CDD\|223100
LS483346.1\|SQF33833.1\|288195_288336_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483346.1\|SQF33839.1\|293961_295218_+\|Zinc-metalloprotease	unknown	unknown	gnl\|CDD\|272878
LS483346.1\|SQF33842.1\|297660_298209_-\|putative-lipoprotein	unknown	unknown	unknown
LS483346.1\|SQF33825.1\|281557_283696_+\|ATP-dependent-protease,-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
LS483346.1\|SQF33838.1\|292929_293733_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
LS483346.1\|SQF33834.1\|288721_288979_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483346.1\|SQF33830.1\|285744_287325_+\|membrane-protein	unknown	unknown	gnl\|CDD\|274008
LS483346.1\|SQF33827.1\|284601_284835_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483346.1\|SQF33841.1\|297223_297604_+\|superfamily-I-DNA/RNA-helicase	unknown	unknown	gnl\|CDD\|377953
LS483346.1\|SQF33837.1\|292161_292911_+\|undecaprenyl-pyrophosphate-synthase	unknown	unknown	gnl\|CDD\|184840
LS483346.1\|SQF33843.1\|298375_302764_+\|DNA-polymerase-III-PolC	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|234767
LS483346.1\|SQF33828.1\|285107_285380_+\|type-VII-secretion-effector	unknown	unknown	gnl\|CDD\|275045

Protein	Function_ID	Function_description	E-value
LS483346.1\|SQF33840.1\|295283_297134_+\|prolyl-tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
LS483346.1\|SQF33836.1\|291596_291932_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235822	PRK06531, yajC, preprotein translocase subunit YajC; Validated.	2.27802e-53
LS483346.1\|SQF33844.1\|302850_304749_+\|putative-RuBisCo-expression-protein-CbbX	gnl\|CDD\|163057	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. [Cellular processes, Sporulation and germination].	7.71412e-72
LS483346.1\|SQF33831.1\|287342_287663_+\|Putative-EsaC-protein-analog-(Listeria-type-3)	gnl\|CDD\|379364	pfam13780, DUF4176, Domain of unknown function (DUF4176).	3.49235e-20
LS483346.1\|SQF33835.1\|289442_291419_+\|putative-transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
LS483346.1\|SQF33839.1\|293961_295218_+\|Zinc-metalloprotease	gnl\|CDD\|272878	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP. Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation. Membership in this family is determined by a match to the full length of the seed alignment; the model also detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	9.29939e-59
LS483346.1\|SQF33825.1\|281557_283696_+\|ATP-dependent-protease,-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
LS483346.1\|SQF33838.1\|292929_293733_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.63298e-71
LS483346.1\|SQF33830.1\|285744_287325_+\|membrane-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00151978
LS483346.1\|SQF33828.1\|285107_285380_+\|type-VII-secretion-effector	gnl\|CDD\|275045	TIGR04197, conserved_hypothetical_protein, type VII secretion effector, SACOL2603 family. Members of this protein family are similar in length and sequence (although remotely) to the WXG100 family of type VII secretion system (T7SS) targets, described by family TIGR03930. Phylogenetic profiling shows that members of this family are similarly restricted to species with T7SS, marking this family as a related set of T7SS effectors. Members include SACOL2603 from Staphylococcus aureus subsp. aureus COL. Oddly, members of family pfam10824 (DUF2580), which appears also to be related, seem not to be tied to T7SS.	1.38099e-14
LS483346.1\|SQF33837.1\|292161_292911_+\|undecaprenyl-pyrophosphate-synthase	gnl\|CDD\|184840	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional.	8.04168e-174
LS483346.1\|SQF33843.1\|298375_302764_+\|DNA-polymerase-III-PolC	gnl\|CDD\|234767	PRK00448, polC, DNA polymerase III PolC; Validated.	0
LS483346.1\|SQF33841.1\|297223_297604_+\|superfamily-I-DNA/RNA-helicase	gnl\|CDD\|377953	pfam08000, bPH_1, Bacterial PH domain. This family contains many bacterial hypothetical proteins. The structures of Structure 3hsa and Structure 3dcx show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in cell envelope stress response.	1.59306e-58

>LS483346.1|SQF33834.1|288721_288979_+|Uncharacterised-protein
MKKLDITTMPDYRKVEAVVQLLVNGTLTSYRIATDANISKMSILTLTKGTSKIKNITYQTAMALINWYEENHEKYGITIHQKAAG
>LS483346.1|SQF33833.1|288195_288336_-|Uncharacterised-protein
MLTFLKSKQLHEASMLVYQRERQYLEENKEQMTSYSSYALASISKL
>LS483346.1|SQF33832.1|287652_288063_+|Uncharacterised-protein
MKRKTIIFSGLVLPALAFGALFLFASLNEASLDGVYYRQIEDGADGFSGLDKETILNLRDQQVTFYKEGLEEKGSIDRKAGSIRLGSKFYSYVHNGDLLMLKLKEDPTNSKESLYLVRKDSPSAKRLEQKSKSQSP
>LS483346.1|SQF33831.1|287342_287663_+|Putative-EsaC-protein-analog-(Listeria-type-3)
MKQQLPIGSVVMVKGSSQPLMIVSQFPVTTLDGQTGYFDFGAVTLPSGLTGKELIFFNKEDIERLVFVGYVDVTFQDLLQRYDELIADIPYPRLTVPERAGAADEA
>LS483346.1|SQF33830.1|285744_287325_+|membrane-protein
MGAKMELPASNQQAGSMATAGQVRIAAYESAMQAMENFVGESGLTGTAYDSAKTYCQGMFLPLFKAAILFEEELVKAGSDLPSRYVSEVAEESLDQDVLESQIASYDQTIDSQNQALTEANKQKDVADSTKSSIQNAITAAQDKRHELQDKLNKLLAFYSSSATIFDNLPGLAAALDQALSLMTEGFANFNGSFVLPSPDRMTWTQAVETAWESKKAVEAAFQKVMDKLDSGEELTPEDIQAVQAYLERYPSRNIPQALRSHLEEAVQQADPILKARLDQAKADQASGSLSQTAFNGLWAGAMLGFMKQAGNQTGAQTVAMPAAKQSAGSSGGSSGFWDFLFGHTNTLEHSKKTDWSTGWLYSTYAKYSTTVEEDDPGIFKYKTNNGIFNGVAVDLGVASVDIDASDWKLNASPQINVGGYHIGVNGSVGLNTDTGWLPMPEINLSLHAGTEQHDTAAGLKVSTDIWNGMVGVYGVDSNISKDSNGNKTVNSVETGAQTVNGLEVAAVVVAVTVAPVVALPALALA
>LS483346.1|SQF33829.1|285392_285755_+|Uncharacterised-protein
MKNSQTLAAERLQAFEKLDKAEEQKRRLDRFEEDIDYLYDRGLLALRELDYLPLTAKDSQDFYDIMGLVEHSHRLLDLDIQDGQDRLDKERKKLDRQIETIQGQYRQALEAEEKEAGYGR
>LS483346.1|SQF33828.1|285107_285380_+|type-VII-secretion-effector
MSDIKSDNGLAASHANSFSAASSQIGAASQVDKDVISHLEGNSRAGEEIDHSSTASADIADKITSFSQLLQSVAEEFQATDQGLAADIEG
>LS483346.1|SQF33827.1|284601_284835_+|Uncharacterised-protein
MYTEIFRITKSVWPLVIMHTMEDAVINPLRLLGFISVEKNQAFLFSLPVGMIPTILYLKVGLAIRKWRKKQEYGKSS
>LS483346.1|SQF33826.1|283957_284242_+|Uncharacterised-protein
MKQSITTIKRNVIIFAFFSTLCGWIGYVVDKVTGQAHYENIGTEIGSGSLGMLIWLVTPLICTIFLRSFGGDGWKEAGFPLILKITKNYTLLVF
>LS483346.1|SQF33825.1|281557_283696_+|ATP-dependent-protease,-ATP-binding-subunit
MNNNYNNFNNMDDLFNQLMGRMGGYNSEHRRYLINGREVTPEEFAQYRATGKLPGQGTGEQTGQATAQGPKQDGILAKLGRNLTQEARDGKLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISVDISGLEAGTQYRGSFEENIQNLVNEVKEAGNIILFFDEIHQILGAGSIGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTILKNAALARRFNEVKVNAPSAEDTYQILRGIRDLYEKHHNVILPDEVLKAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQHPVTDVHAVENEIAEQKDKQEAAVEKEDYEAALNAKTRIEELEKKIQNHTEDMKVTATVNDVAESVERMTGVPVSQMGASDIERLKGMNDRLKAKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYEAGLEEDAEKPDLMDRLKAYFRPEFLNRFNAVIEFSHLKKEDLMEIVNLMLFEVNQTLSKKEIDLAVSDAAKEFLRDAGYDQVMGVRPLRRVIEQQIRDKVTDFHLDNLDAKHLMADLEDGVLVIKEKGAAASEEDKQAE
>LS483346.1|SQF33835.1|289442_291419_+|putative-transketolase
MSQLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYDLFTKQLRINPEQPNWINRDRFVLSAGHGSMLLYALLHLSGFKDVSMEEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNREGYPIFDHYTYVICGDGDLMEGVSAEAASYAGLQKLDKLVVLYDSNDINLDGETKDSFTEDVRARYEAYGWHTALVEDGTDLAAIDAAINEAKASGKPSLIEVKTVIGYGSPNKQGTNAVHGAPLGAEEAEATRKALGWDYAPFEIPEEVYADYRTNVAERGAAAYDAWKQLVEDYKQAHPELAAEVTAIIAGQDPVEIKPEDFPVLENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDDAHRLNRNIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLRAIPNLTVFRPADARETQAAWYLALKSQSTPTALVLTRQNLTVEEGTNFDKVAKGAYVVYETGADFDTILLASGSEVNLAVAAAKALAAEGTKIRVVSVPSTELFDAQDAAYKEEILPNAVRRRVAIEMAASQPWYKYVGLDGAVIGIDQFGASAPAGKVLEEYGFTVEHVAEVVKNLK
>LS483346.1|SQF33836.1|291596_291932_+|preprotein-translocase-subunit-YajC
MNPIMLIVFAVVLVGMTYFQMRAQKKQAQQRMESLNKLQKGYEVITIGGLYGTVDEVDTDKKTVVLDVDGVYLTFELTAIKTVLPLTEGIPAVAGGEGSVDLPEEESAIEE
>LS483346.1|SQF33837.1|292161_292911_+|undecaprenyl-pyrophosphate-synthase
MFSFKKKEKLNAPLNVPKHIAVIMDGNGRWAKKRMQPRVFGHKAGMETLQRVTIAAKEMGVQVLTVYAFSTENWSRPEKEVSFIMNLPVEFYDRYVPELHKNNVKIQMIGDTAKLPKATFEALEKAESLTKLNTGLILNFALNYGGRYEINQAVKLIAQDVLDAKLSPGDITEEVIGNYLYTSNLPKMLRDPDLVIRTSGELRLSNFLPWQSAYSELYFTDILWPDFDEKALKAAIAEYSRRNRRFGGV
>LS483346.1|SQF33838.1|292929_293733_+|phosphatidate-cytidylyltransferase
MSKNLQKRLIFGGIALAIFIPLVLTGGVIFQIFVGLLAMLAVHEFLQMKGLPTATIEGVLAMLAAFVLTLPLENYLKFLPVDGNVVAYGLVVFLLLISTVLGSNYTFEDAAYPITASFYVGLGFNALIDARLMNIDKVLLALFIVWATDSGAYLVGVRFGKRKLAPRVSPNKTIEGSLGGILSAVLVTGIFMLVRPQVATPYNAFVFLILAVLFSIAGQLGDLVESSVKRHFGVKDSGKFIPGHGGVLDRFDSLLFVFPLMHFFGLF
>LS483346.1|SQF33839.1|293961_295218_+|Zinc-metalloprotease
MQFITFIIIFGIIVVVHEFGHFYFAKKSGILVREFAIGMGPKIFSHIGKDGTAYTIRILPLGGYVRMAGWGEDSTDIKVGTPASLTLDAEGKVVRINLSGKKVDQTALPMNVTGFDFEEKLEITGLVLDELKTYAVDHDATIVEEDGTEVRIAPLDVQYQNASIWGRLITNFAGPMNNFILSVLVFMLLAFVQGGVRDENSNHFQVMDGSAIAAAGVQNNDQILKINDYKISNWADLTSALAKITGKSKEAPTLSVTYKHDSETKEITVQPKKDGNRYLLGVSPTVKTGFWDKVVGGFTAAWSTTVRILSALKDIIFNFNINKLGGPVAIYNFSSQAAEQGLPAVLSLLAMLSLNIGIFNLIPIPALDGGKIVLNILEAIRRKPLKRETETYITLSGVAIMVILMIAVTWNDIMKLFF
>LS483346.1|SQF33840.1|295283_297134_+|prolyl-tRNA-ligase
MKQSKMLIPTLREMPSDAQVISHALMLRAGYVRQVSAGVYSYLPLANRVIEKAKKIMREEFDKIGAVEMLAPALLSADLWRESGRYETYGEDLYKLKNREKSDFILGPTHEETFTAIVRDSVKSYKQLPLNLYQIQPKYRDEKRPRNGLLRTREFIMKDAYSFHANYDSLDVAYDEYKSAYEKIFTRSELDFKAIIGDGGAMGGKDSQEFMAITPDRTDVNRWVVLDKSVASFDEIPEDVQEAIRTELTSWMVSGEDTIAYSSESSYAANLEMATDEYKPAGRVVTEEEVARVSTPDCKTIDEVAVFLGLDESQTIKTLVYMADEAPVVALLVGNDQLNEVKLKNHLAADFFDVASEDQVRQLLGAGFGSLGPVNLPEGVRIIADRKVQDLANAVVGANEDGYHLTGVNPGRDFTAEYVDIREVREGEISPDGQGVLKFARGIEIGHIFKLGTRYSDSMNANVLDENGRAVPMIMGCYGIGVSRLLSAVMEQHARLFVNKTPKGEFRYAWGINFPKELAPFDVHLIPVNVKDEDAVALTDQIEANLLSAGYEVLVDDRNERAGVKFSDSDLIGLPIRVTVGKKAAEGIVEVKIKATGDTIEVHADNLLETLSILTK
>LS483346.1|SQF33841.1|297223_297604_+|superfamily-I-DNA/RNA-helicase
MGLFSGLLGNASQKDIEKTERQLEDILTTTENVELAFSLIRDLIVFTDKRLILVDKQGMTGKKTSYKSFPYRSISRFSVETAGHFDLDAELKIWVSSAQEPAEVLQFTSDRSVIAIQKALAEAVLR
>LS483346.1|SQF33842.1|297660_298209_-|putative-lipoprotein
MKKILLASACLLTLTACSMPNQHKQENKPKQNQSQSQSKVKEEKTKTKTFSRSVSDDSVIKVKVYYQKDKITAFSFITEKEIPDEEKGKSRKELADIYQKDMESSPNFEAVHKTKGIESEVRISADKKIVHQSVTLDLNKIDIDEAAAAFGVTNQEDTIFERLKDKPEDFFEAIKEQGLTEE
>LS483346.1|SQF33843.1|298375_302764_+|DNA-polymerase-III-PolC
MSNKFEILMHQLDMPLEMRNSEAFLNAEIEEVLVHKVSRVWEFHFSFANILPIEIFRELQKRLAQEFSKTGNQAIFEIHCQAPQVSDELLQAYYQLAFEEGPCASHGFKSLYQDLRVHLDGDKLLIEGASTIDTEHFRKNHLPNLSQQLVKYGFPQLTCQVQHSDELTQQQAENFQAENDKIVQAANEEALKAMESLQQMAPPPEEKPAYDFQARKAAAKPKLDKAEITPMIEVQTEENRLVFEGMVFDLEQKVTRTGRVLLNFKMTDYTSSFSLQKWMKNEEEAKKFDMIKKGAWLRVRGNVEMNNFTRDLTMNVQDVQAVTHYERKDLMPEGQKRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIYGMEANIVEDRVPIVYNEVDMELSDATYVVFDVETTGLSAVYNDLIQVAASKMHKGNIIAEFDEFINPGHPLSAFTTDLTGITDEHVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLEFARNLYPEYKRHGLGPLTKRFQIALEHHHMANYDAEATGRLLFIFIKDVAEKHGVTNLKDLNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTKYFEGVPRIPRTVLDAHREGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYDFIEVMPPAIYEPLIAKEQIKDQEELQTIIRNLIEVGDRLCKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGHGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTPFIDKAEETVAELTYQKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVGSRGSVGSSFVATMIGITEVNPLSPHYVCGTCQYSEFITDGSYGSGFDMPDKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGAEYAFRAGTVGTVAAKTAYGFVKGYERDYGKFYRDAEVERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDENVLKLDVLGHDDPTMIRKLQDLSGVDPNDIPMDDAGVMALFSGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGLWLKISEEERNGYIAAMKENNVPEWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPVYYYCAYFSIRAKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKRGGLSSTLVEKMDDMGILGNMPEDNQLSLFDEFF
>LS483346.1|SQF33844.1|302850_304749_+|putative-RuBisCo-expression-protein-CbbX
MFFYQIEFSKMNKNIKEVDENFIQENQWFYCFKSQTCLYVVGVTEHTKEDLFDKLKTLGVNDEEYTDFKVKSISKSEYLKEVGNKYSAQIGQLFLHSDEREFSNSDGFAITDLERRDLNIIGLNEFQEYVLKLKMFLNNQKERRRKKEKVLVENQFLIFKGSLGTGKKFAIKYLMRLLNVKSKTILKDGFSVNFESEQRLVIIKDYSTMHPRRKEELKNNIVEATGGRIYIFLVESDSIAYEISREFLPLFHVVYELNFPPYSYNELVDIIKFRLGDYGFHLEEDQIKLLSNHNCLTNSYDSCYFAQKIIEYNVIESNLINGKQNFSLPSDLFCMKGCNNPLATNSNTLKELDRLVGLSTVKNMIHRILAYFSISQRRLEINSSPVRPSMHFMFSGASGTGKTIVARLLTKIFYKHGIIKSNVLIEVGRSDLIGEYVGQTAPKVKRLFDNAKGGILFIDEAYSLIPQGERDFANEAIPTIIQEMENNRNDVIVIFAGYTEMMEEFLNINPGLASRISRKIHFENYNKYELYDILTLMADQQGYIVDKKCKTILLTYFEKCLCSESFGNARYVRKLFELVLYIQAERLMKEEIVSDLTDAELSYLSYIDFEKAIHDLEKKENNLKIIGFRTDI

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Crispr_ID: LS483346_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483346_2

1293219-1293306

TypeIII-A

Consensus_repeat	Method
GAACCTTGGATTAAGGAGAACTCGC	CRISPRCasFinder

1 spacers

csm6

The CRISPR arrays of LS483346_2

>merge|LS483346|2|1293219-1293306|CRISPRCasFinder
GAACCTTGGATTAAGGAGAACTCGCTTAACCGAGTGATTATCCGCAACCTAAAACAGTTCCCTGAACCTTGGATTAAGGATAACTCGC

>LS483346|2|2|1293219-1293306|CRISPRCasFinder
GAACCTTGGATTAAGGAGAACTCGC	TTAACCGAGTGATTATCCGCAACCTAAAACAGTTCCCT
GAACCTTGGATTAAGGATAACTCGC

Protein	Signature genes	Signature genes Name	Protein_function
LS483346.1\|SQF34875.1\|1299825_1300620_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|350624
LS483346.1\|SQF34863.1\|1289135_1289813_-\|ribose-5-phosphate-isomerase-A	unknown	unknown	gnl\|CDD\|234816
LS483346.1\|SQF34874.1\|1299505_1299796_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380358
LS483346.1\|SQF34876.1\|1300624_1302355_-\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|226987
LS483346.1\|SQF34862.1\|1287910_1289122_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
LS483346.1\|SQF34859.1\|1285262_1286024_-\|histidine-protein-kinase	csm6	cd09746_csm6_CAS-III-A	gnl\|CDD\|312974
LS483346.1\|SQF34868.1\|1292750_1293014_-\|chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|168880
LS483346.1\|SQF34865.1\|1291587_1291935_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
LS483346.1\|SQF34861.1\|1287068_1287881_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
LS483346.1\|SQF34870.1\|1294825_1295266_-\|flavodoxin	unknown	unknown	gnl\|CDD\|180922
LS483346.1\|SQF34866.1\|1292053_1292380_-\|camphor-resistance-protein-CrcB	unknown	unknown	gnl\|CDD\|172717
LS483346.1\|SQF34860.1\|1286020_1286809_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
LS483346.1\|SQF34872.1\|1296414_1296657_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
LS483346.1\|SQF34873.1\|1296873_1298802_-\|cell-wall-protein	unknown	unknown	gnl\|CDD\|223021
LS483346.1\|SQF34864.1\|1289989_1291363_+\|tRNA-modification-GTPase-TrmE	unknown	unknown	gnl\|CDD\|235392
LS483346.1\|SQF34871.1\|1295371_1296307_+\|DHH-subfamily-1-protein	unknown	unknown	gnl\|CDD\|223691
LS483346.1\|SQF34867.1\|1292376_1292751_-\|camphor-resistance-protein-CrcB	unknown	unknown	gnl\|CDD\|184575
LS483346.1\|SQF34878.1\|1303507_1303804_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
LS483346.1\|SQF34877.1\|1302371_1303409_-\|response-regulator-(Homolog-to-RR11-Spn)	unknown	unknown	gnl\|CDD\|370676
LS483346.1\|SQF34869.1\|1293318_1294701_-\|FeS-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035

Protein	Function_ID	Function_description	E-value
LS483346.1\|SQF34875.1\|1299825_1300620_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|350624	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins. This L,D-carboxypeptidase family includes LdcB LD-Carboxypeptidase from Streptococcus pneumoniae, Bacillus anthracis, and Bacillus subtilis, and L,D-carboxypeptidase DacB from Streptococcus pneumonia and Lactococcus lactis. These enzymes are active against cell-wall-derived tetrapeptides and synthetic tetrapeptides lacking the sugar moiety but are inactive against tetrapeptides terminating in L-alanine. L,D-carboxypeptidase DacB plays a key role in the remodeling of S. pneumoniae peptidoglycan during cell division. It adopts a zinc-dependent carboxypeptidase fold and acts as an L,D-carboxypeptidase towards the tetrapeptide L-Ala-D-iGln-L-Lys-D-Ala of the peptidoglycan stem. This family also includes vanY D-Ala-D-Ala carboxypeptidase which is vancomycin-inducible and penicillin-resistant. VanY hydrolyzes depsipeptide- and D-alanyl-D-alanine-containing peptidoglycan precursors; it is insensitive to beta-lactams. All these enzymes belong to the MEROPS family M15 subfamily B.	9.80545e-62
LS483346.1\|SQF34863.1\|1289135_1289813_-\|ribose-5-phosphate-isomerase-A	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	1.34947e-117
LS483346.1\|SQF34874.1\|1299505_1299796_-\|Uncharacterised-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	3.16905e-19
LS483346.1\|SQF34876.1\|1300624_1302355_-\|Predicted-membrane-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	1.09212e-10
LS483346.1\|SQF34862.1\|1287910_1289122_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
LS483346.1\|SQF34859.1\|1285262_1286024_-\|histidine-protein-kinase	gnl\|CDD\|312974	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	1.01666e-19
LS483346.1\|SQF34868.1\|1292750_1293014_-\|chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|168880	PRK07248, PRK07248, chorismate mutase.	2.68554e-36
LS483346.1\|SQF34865.1\|1291587_1291935_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.65994e-70
LS483346.1\|SQF34861.1\|1287068_1287881_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	1.71234e-166
LS483346.1\|SQF34870.1\|1294825_1295266_-\|flavodoxin	gnl\|CDD\|180922	PRK07308, PRK07308, flavodoxin; Validated.	1.73563e-78
LS483346.1\|SQF34866.1\|1292053_1292380_-\|camphor-resistance-protein-CrcB	gnl\|CDD\|172717	PRK14229, PRK14229, fluoride efflux transporter CrcB.	7.07962e-55
LS483346.1\|SQF34860.1\|1286020_1286809_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	6.21671e-154
LS483346.1\|SQF34872.1\|1296414_1296657_+\|50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	1.37164e-48
LS483346.1\|SQF34873.1\|1296873_1298802_-\|cell-wall-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	5.32205e-09
LS483346.1\|SQF34864.1\|1289989_1291363_+\|tRNA-modification-GTPase-TrmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
LS483346.1\|SQF34871.1\|1295371_1296307_+\|DHH-subfamily-1-protein	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.80208e-92
LS483346.1\|SQF34867.1\|1292376_1292751_-\|camphor-resistance-protein-CrcB	gnl\|CDD\|184575	PRK14221, PRK14221, fluoride efflux transporter CrcB.	4.45083e-57
LS483346.1\|SQF34878.1\|1303507_1303804_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.81851e-25
LS483346.1\|SQF34877.1\|1302371_1303409_-\|response-regulator-(Homolog-to-RR11-Spn)	gnl\|CDD\|370676	pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.	2.62491e-07
LS483346.1\|SQF34869.1\|1293318_1294701_-\|FeS-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0

>LS483346.1|SQF34868.1|1292750_1293014_-|chorismate-mutase/prephenate-dehydratase
MRLEEIRQEIDQVDDAIVTLLEQRMNLVDQVVALKKLTGTAVLDSKRQDVIFARVADKVEKKDYKETVVATFSDILKRSREFQNKNI
>LS483346.1|SQF34867.1|1292376_1292751_-|camphor-resistance-protein-CrcB
MKEVQNSIAVALSAMVGGWLRYQIALLLVVADSFPLPTLLVNYLGTFLLVYIIKGYLSSKVKSQRLILALSTGFCGGLTTFSGLLLDSIKLADSGRYTELLIYLVLSVGGGLAIVLWAGKQVKA
>LS483346.1|SQF34866.1|1292053_1292380_-|camphor-resistance-protein-CrcB
MMWAMLICCGAGSLVRYVFSKVNSRASLPIGTLLANLLGAFLIGYFYNHIEDKQLYVILATGFCGGLTTFSTMNAELAELFSERKKFVFYLALTYILGFFAILLGIFI
>LS483346.1|SQF34865.1|1291587_1291935_-|50S-ribosomal-protein-L19
MNPLIQSLTEGQLRTDIPAFRPGDTVRVHAKVVEGSRERIQIFEGVVIARKGAGISETYTVRKISNGIGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRALQGKAARIKEVRR
>LS483346.1|SQF34864.1|1289989_1291363_+|tRNA-modification-GTPase-TrmE
MITREFDTIAAISTPLGEGAIGIVRLSGTDSFAIAQKIFKGKNLSKVESHTLNYGHIVDPQNQEILDEVMLGAMRSPKTFTREDIIEINTHGGIAVTNEILQLAIREGARMAEPGEFTKRAFLNGRVDLTQAEAVMDIIRAKTDKAMNNAVKQLDGSLSNLINNTRQKILNTLAQVEVNIDYPEYDDVEEMTTQLMREKTAEFEALLSNLLDTARRGKILREGISTAIIGRPNVGKSSLLNNLLREDKAIVTDIEGTTRDVIEEYVNIKGVPLKLIDTAGIRETDDLVEQIGVERSKKALQEADLVLLVLNASEPLTDQDRQLLEISQDSNRIVLLNKTDLEEKIELDQLPTDVIKISVLHNQNIDKIEERINQLFFENAGIVEQDATYLSNARHISLIEKALESLQAVNQGLEMGMPVDLLQVDMTRTWEILGEITGDAAPDELITQLFSQFCLGK
>LS483346.1|SQF34863.1|1289135_1289813_-|ribose-5-phosphate-isomerase-A
MENLKKLAGIKAAEFVQSGMIVGLGTGSTAYYFVEEIGRRIKEEGLQITAVTTSSVTSKQAEGLGIPLKSIDEVDFVDVTVDGADEVDSAFNGIKGGGGALLMEKVVAVPTKHYIWVVDESKMVEKLGAFKLPVEVVQYGAEQLFRRFERAGYKPAFREKDDQRFVTDMQNFIIDLDLGVIENPVEFAQELDHVVGVVEHGLFNQMVDKVIIAGKSGLQVLEANK
>LS483346.1|SQF34862.1|1287910_1289122_-|phosphopentomutase
MPKFNRIHLVVMDSVGIGAAPDANNFVNAGVPDGASDTLGHISKTVGLNVPNMAKIGLGNIERPTPLKTVPQEENPSGYYTKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTQIEEFSGRKVIREANKPYSGTAVIDDFGPRQMETGELIIYTSADPVLQIAAHEEVIPLEELYRICEFARSITLERPALLGRIIARPYVGEPGNFTRTANRHDYAVSPFNPTVLDKLNEAGIDTYSVGKINDIFNGAGINHDMGHNKSNNHGVDTLVKALKDDNFKEGFSFTNLVDFDALYGHRRDPHGYRDCLEEFDARIPEIIKNMREDDLLMITADHGNDPTYAGTDHTREYIPLLVFGKSLSGHGHIPVGHFADISATIAENFGVDKAMIGESFLDKLV
>LS483346.1|SQF34861.1|1287068_1287881_-|purine-nucleoside-phosphorylase
MTSLSEKIKETAAFLKEKGMTEPEFGLILGSGLGELASEIENAVSLDYADIPNWGRSTVVGHAGKLVYGDLAGRKVLALQGRFHFYEGNPLEIVTFPVRVMKALGATGVIVTNAAGGIGYGPGTLMAITDHINMTGQNPLIGENLDEFGPRFPDMSKSYTPEYRAVAHKVADKLGIKLDEGVYIGVTGPTYETPAEIRAYKTLGADAVGMSTVPEVIVAAHSGLKVLGISCITNFAAGFQEELNHEEVVEVTERVKGDFKRLLKETLAEL
>LS483346.1|SQF34860.1|1286020_1286809_-|purine-nucleoside-phosphorylase
MILRASLTAPISYFPFAFDGFGILTMSIHISAKQGEIADKILLPGDPLRAKFIAENFLEDAVCFNEVRNMFGYTGTYKGHRVSVMGTGMGIPSISIYARELIVDYGVKKLIRVGTAGSLNADVHVRELVLAQAAATNSNIIRNDWPQYDFPQIASFDLLDKAYHIAKDLGMTTHVGNVLSSDVFYSNYFEKNIELGKWGVKAVEMEAAALYYLAAQYHVDALAIMTISDSLVNPEEDTTAEERQNTFTDMMKVGLETLIAEA
>LS483346.1|SQF34859.1|1285262_1286024_-|histidine-protein-kinase
MKVDVKEAIHFAISRYDYAYAHKLAERAGSSVKSDLVLLLEALADRRELNVQSMMNLKLEITRSDLADFQLFCHENESDEQLVNYLYDLEAKLRNEQLIDFIRAVSPAIYRIFMRLIRMQIPDIESYIHNSRGASYDRWKFEKMRNSDNPDLQNFHAESTVNSSSLTELILQLHLPESVKESAQQLRELEKSVRNPLAHLIKPFDEEELHRTTGFSSQHFMALLVDLAQETGIVYQREPFYFDRANELIESLL
>LS483346.1|SQF34869.1|1293318_1294701_-|FeS-assembly-protein-SufB
MKERDYAFGFHDDVKPLFSTGKGLTEEVVREISEIKNEPQWMLDYRLRSLELFHKLPMPDFGPDLSGIRFDDVIYYQKLSGDRARSWDEVPEEIKKTFDRLGIPEAEKHFLSGAVAQYESEVVYHNMKEEFAKLGIIFTDTDTAVQEYPDLVKQYFGTVISNAEHKFSALNSAVWSGGTFIYVPKNVQCQVPVQTYFRINGENAGQFERSLMIIEEGGSIQYIEGCTAPTYTSNSLHAANVEIIVKKDAFFRYTTIQNWSDNVYNLVTERGIVDEGGTLEWIDGNLGSKVNMKYPCSILNGRNARTSVLSMSFANYGQHLDAGCKVFHNAPKTSSTLISKSVAKDGGKTDYRGQVRFGKNSAGSKSHIECDTILMDGESSSDTIPFNEIHNSNVALEHEAKVSKVSEDQLYYLMSRGISEEEATAMIINGFMEPITKELPMEYAVELNQLINMSMEGSVG
>LS483346.1|SQF34870.1|1294825_1295266_-|flavodoxin
MTLAKIVFASMTGNTEEIADIVADKLRDLDVEVEVDECTTVDAEDFLEADITIVATYTYGDGELPDEMMDFYEDLSSLDLSGKVYGVVGSGDTFYDEFCKAVDDFDAAFAATGATKGAESVKVDLSAEDDDIARLEAFAEGLVNKV
>LS483346.1|SQF34871.1|1295371_1296307_+|DHH-subfamily-1-protein
MTLYHDILSKIKEYDTIIIHRHMRPDPDALGSQVGLQKLLQYHFPEKTIKVTGYDEPNLMWLAQMDKVSDEEYQEALVIVCDTANTARIDDQRYTTGDFLIKIDHHPDDEVYGDISLVDTSSSSASEMIALFAFENGLDLSKEAAELLYAGIIGDTGRFLYPSTSARTFEVAAKLRQYDFDLSALSRKMDSISRQVAKLQGYVYEQLEIDENGAARVILPQKVLQAYQLTDADTAAIVGAPGRIEDVGLWAIFVEQPDGHYRVRMRSKVIPINGIAKNHHGGGHPLASGANAFSKEEIEQIYTEMKELAKK
>LS483346.1|SQF34872.1|1296414_1296657_+|50S-ribosomal-protein-L31
MRKDIHPEYRPVVFMDTSTGYQFLSGSTKRSNETVEFEGETYPLIRVEISSDSHPFYTGRQKFTQADGRVDRFNKKYGLK
>LS483346.1|SQF34873.1|1296873_1298802_-|cell-wall-protein
MNNRFRLLSRSVVAAAAIIPAFALANNAQAQDYGYNYYQPGYNYWNGGYNNYNYGYNNYNYRNNRNYRYNNYNYGYNNYNYGYNNYNYGYNYGYNGYNYDYGYNNYYPGYNNWNYNYSNNYGYNGWNNYNNLANDENYIYWNGNHYYRMTDGSYRIYRDGEWKPLTNTNNNSTSNNNLENDPHYRYENGYHYYVLDNGDYYYYQNGKWVFVKDSADNSTNPTTPSQPEEPKPEVPTPTPAEPEQPTPAPNDRPEQPTTPAEPKPEVPSVDLPENPPINGAEGDLNPFAPKPEQPAEPKPETPTRPAVPETPGLVTTDKPSEDQIPPYVEKPAEGLEHLTWAPNGRAPKIIYPTGKPGDKALESDPNYYFDGSTHYYRIPSDSEANGYSPYWKWFGDKWKLQGMTDPNDPALDPKLHENTADDEYMYSDKDSSVKLYSTNLVTTAKAGQPLPFKNVEEFKNYVIEKMNPKFLDNAGWDAKVEWEIEDPEIFEKTKENPYAKDYVLIANLKSGVEDKKYSDVEFGYVKFVYRVEATNDTNYDYVSKAKEAFAKINEERKAQGLKELTWSEDIYQNQALPKVNEISRQYDSSGFVGRRDEDPSVVVKKWANSGLRELLLDPNVTEGAVATVVDGNGVYYWAYSYK
>LS483346.1|SQF34874.1|1299505_1299796_-|Uncharacterised-protein
MKFFVTNPNNDFAETPVQEEGRIIHHLHLAKGKEVPEHSADALVTVVCLSGDVSFSAGEQTVRLVAGSFLTMEPNEPHSLVGEEDSHLLVIKQLKY
>LS483346.1|SQF34875.1|1299825_1300620_-|D-alanyl-D-alanine-carboxypeptidase
MTMKYSKLILLAASVLVLGACSSGKDTTGDSSDKQAASSTSTVKKQDAEKDKNSSQDTTTSSDSTDTKKKQNHEAKTLDQNVSYNGSYYSVKGKYDEILLVNKHYPLSPSYNPGENATAKAELLKLIADMQAQGYAISDQYSGFRSYDTQTELYQNYVNQDGKAAADRYSARPGYSEHQTGLAFDLIDKNGNLVQEAGASQWLLNNAYKYGFIVRYLEGKEGSTGYMPESWHLRYIGQEAKEIAQSGKSLEEYFGITGGGYEDQ
>LS483346.1|SQF34876.1|1300624_1302355_-|Predicted-membrane-protein
MATKEKWVDLFEKVIGRKPTASEFQAGKQSNFDPKKIKEIAGEAGEATTDTSSVENTTDEASDNQDIVQETPSEDSVTEESIQPTSQDEKQGEFESSQYEELRQNWLQAFENNIGRKPTKEEFAEAKSQGFSNLPIRSELLDSQLPQKPVKKAKKRISKKQAIMIGAPTVLVAALIGVFFYLNSITGVKVVTDHFAKAVSSKDFDEVASLLSTQSDKWTRAEARALVEHLESQEINLETELDNIVESNGKSAYIDDNNNKILGVTEKSKKFGIFQEYQMVSYPVKVKVNTNLDNATIKPGEKKTITLKKNTDTELGEYHFIKQDFTLKGKTDVGDVESKVQLDLATAKDNEIKLDLKSEKKQLKITMPSETSKATDIKIVVNGKESGSSLTPELQLVPYQELEIYAKFTISDTTFTTNKETVIVEDDTTNVKLSLPKEVVSKIREKNEEAKKVEAQKAKVSTFLNDYRSAVFSSVSNRSNNYSQYYDTSSAVYREMVEWTTGGGVKKAKINYYEPGALDIREIKEENGSYIVTTYEDYTVHYVDSTPNSVNRKNKTYYLKPSGDSFVIYNLEVSEG
>LS483346.1|SQF34877.1|1302371_1303409_-|response-regulator-(Homolog-to-RR11-Spn)
MSKQDWLEYFEAVNGRSATEEEIAQALAAGEFVEAEQVSAEQASSEASPASSSFEQPQNFQQPFAQQASQQYQEVPQQQANPNQFANQGQAYQQQGFQQASPFAGQPQSSGPQAYQNNQQQGQFNSQIPQQGPQAYYSQQPPQPSEFSKTMKGFWAWLVSAWKSPTSEVESSKVNGYLSLGLTAFFFAIVANYNIFSTIGIMSFGMYNGPTFNFKVFFVSLIAAALFLFSIILGGFVVKRLVYQDRSFTFNKAFDWYGRLYAIVLPFIAASALFALLGIIHLSLFFTWIVLLLVGVGATFALIYSKTNNSMDPFYKYLLAIIINGVITIIFSFIAFSLLASIIMM
>LS483346.1|SQF34878.1|1303507_1303804_-|rhodanese-like-domain-containing-protein
MQKISAKDLYDKLQLEELQLIDVREVDEFTAGHVSGAQNLPLSSLAENYGQLDKQIPYHIICQKGGRSARACEFLEAKGYQVTNVEGGVEAFPDKLTI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

31404 : 39437

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF33576.1\|31404_31653_+	acyl carrier protein	A0A1P8VWH3	Flavobacterium_phage	2.7e-05	38.3
SQF33577.1\|31807_32515_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A1D8KNF0	Synechococcus_phage	6.0e-42	38.8
SQF33578.1\|32534_36269_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	2.5e-38	25.6
SQF33579.1\|36367_37807_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.6e-57	34.8
SQF33580.1\|37866_38889_+	phosphoribosylaminoimidazole synthetase	A0A1D7SE90	Cyanophage	6.9e-63	42.9
SQF33581.1\|38885_39437_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-25	36.9

DBSCAN-SWA_2

798630 : 804872

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF34370.1\|798630_799521_+	glmZ(sRNA)-inactivating NTPase	A0A0R8VB27	Thermobifida_phage	1.0e-06	29.8
SQF34372.1\|799517_800495_+	transporter	A1IMD5	Streptococcus_phage	1.1e-153	82.5
SQF34374.1\|800491_801403_+	cytoplasmic protein	Q7AWZ3	Streptococcus_phage	3.5e-119	73.6
SQF34375.1\|801436_802405_-	thioredoxin-disulfide reductase	Q9JRK7	Streptococcus_phage	4.8e-50	75.8
SQF34377.1\|802516_803833_-	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	3.9e-95	43.0
SQF34379.1\|804022_804379_+	integral membrane protein	NA	NA	NA	NA
SQF34381.1\|804494_804872_+	copper transport operon or penicillinase transcription repressor	X5JAW5	Clostridium_phage	5.0e-11	34.2

DBSCAN-SWA_3

1475379 : 1530948

Streptococcus_phage(42.86%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF35061.1\|1475379_1476369_-\|tRNA	tRNA synthetase class II core domain-containing protein	NA	NA	NA	NA
SQF35062.1\|1476424_1477483_-	histidinol-phosphate aminotransferase	NA	NA	NA	NA
SQF35063.1\|1477956_1478262_-	Uncharacterised protein	NA	NA	NA	NA
SQF35064.1\|1478295_1481970_-	exonuclease RexA	G3MA40	Bacillus_virus	1.4e-20	23.8
SQF35065.1\|1481966_1485248_-	second subunit of major exonuclease	NA	NA	NA	NA
SQF35066.1\|1485449_1485761_-	Uncharacterised protein	NA	NA	NA	NA
SQF35067.1\|1485807_1486653_-	membrane associated lipoprotein	NA	NA	NA	NA
SQF35068.1\|1486686_1487229_-	putative cytoplasmic protein	NA	NA	NA	NA
SQF35069.1\|1487288_1487786_-	Uncharacterised protein	NA	NA	NA	NA
SQF35070.1\|1487884_1489630_-	neopullulanase alpha amylase subunit	NA	NA	NA	NA
SQF35071.1\|1489868_1490747_-	aminoglycoside phosphotransferase	NA	NA	NA	NA
SQF35072.1\|1491055_1492597_-	ABC transporter	F2Y2R6	Organic_Lake_phycodnavirus	1.4e-11	25.0
SQF35073.1\|1492762_1493344_-	membrane protein	NA	NA	NA	NA
SQF35074.1\|1493336_1494077_-	ABC transporter	NA	NA	NA	NA
SQF35075.1\|1494066_1494966_-	ABC transporter protein	A0A2H4PQG7	Staphylococcus_phage	3.7e-20	29.2
SQF35076.1\|1495166_1496537_-	RNA methyltransferase	E4ZFI6	Streptococcus_phage	4.9e-189	71.6
SQF35077.1\|1496621_1497971_-	LytR family transcriptional regulator	NA	NA	NA	NA
SQF35078.1\|1497989_1498823_-	prephenate dehydratase	NA	NA	NA	NA
SQF35079.1\|1498819_1499296_-	shikimate kinase	NA	NA	NA	NA
SQF35080.1\|1499288_1500572_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
SQF35081.1\|1500704_1501043_-	3-phosphoshikimate 1-carboxyvinyltransferase	A0A1X9I5Y8	Streptococcus_phage	4.4e-27	54.5
SQF35082.1\|1501061_1502168_-	prephenate dehydrogenase	NA	NA	NA	NA
SQF35083.1\|1502183_1503350_-	chorismate synthase	A0A291AU41	Pandoravirus	7.9e-39	33.9
SQF35084.1\|1503440_1504508_-	3-dehydroquinate synthase	NA	NA	NA	NA
SQF35085.1\|1504919_1505528_-	Uncharacterised protein	NA	NA	NA	NA
SQF35086.1\|1505547_1506405_-	shikimate 5-dehydrogenase	NA	NA	NA	NA
SQF35087.1\|1506394_1507072_-	3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	2.9e-86	70.0
SQF35088.1\|1507068_1508232_-	methyltransferase	W6LLI2	Streptococcus_phage	1.3e-131	61.2
SQF35089.1\|1508482_1510678_+	phosphoglycerol transferase alkaline phosphatase superfamily protein	W6LM83	Streptococcus_phage	3.0e-249	64.3
SQF35090.1\|1510805_1511033_+\|transposase	transposase	NA	NA	NA	NA
SQF35091.1\|1511101_1511353_+\|transposase	IS1167 transposase	NA	NA	NA	NA
SQF35092.1\|1511494_1511980_+\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	1.2e-62	73.4
SQF35093.1\|1512217_1513099_-	Hydrolase, alpha/beta hydrolase fold family	NA	NA	NA	NA
SQF35094.1\|1513083_1514880_-	FmtA-like protein	NA	NA	NA	NA
SQF35095.1\|1515200_1517498_-	pullulanase	NA	NA	NA	NA
SQF35096.1\|1517521_1518472_-	lipid kinase	A0A1V0SBJ0	Catovirus	1.0e-15	24.5
SQF35097.1\|1518481_1520428_-	NAD-dependent DNA ligase LigA	A0A289ZTZ3	Serratia_phage	2.4e-101	38.8
SQF35098.1\|1520654_1520945_-\|transposase	transposase of family protein	A0A1P8BMC0	Lactococcus_phage	1.5e-10	41.5
SQF35099.1\|1521177_1521528_+\|transposase	transposase	NA	NA	NA	NA
SQF35100.1\|1521441_1522149_-	group-specific protein	NA	NA	NA	NA
SQF35101.1\|1522246_1522459_-	Uncharacterised protein	NA	NA	NA	NA
SQF35102.1\|1522491_1522935_-	Uncharacterised protein	NA	NA	NA	NA
SQF35103.1\|1522953_1523715_-	Uncharacterised protein	NA	NA	NA	NA
SQF35104.1\|1523838_1524048_-	Uncharacterised protein	NA	NA	NA	NA
SQF35105.1\|1524086_1524638_-	RNA:NAD 2'-phosphotransferase	A0A2H4UTN1	Bodo_saltans_virus	2.5e-27	36.3
SQF35106.1\|1524630_1525002_-	Uncharacterised protein	NA	NA	NA	NA
SQF35107.1\|1525007_1526618_-	Uncharacterised protein	NA	NA	NA	NA
SQF35108.1\|1526684_1527446_-	Uncharacterised protein	NA	NA	NA	NA
SQF35109.1\|1527421_1527946_-	Uncharacterised protein	NA	NA	NA	NA
SQF35110.1\|1527976_1528663_-	Uncharacterised protein	NA	NA	NA	NA
SQF35111.1\|1528668_1530948_-\|transposase	transposase family protein	NA	NA	NA	NA

DBSCAN-SWA_4

1768220 : 1779701

Streptococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF35383.1\|1768220_1769048_+	exodeoxyribonuclease	M1PSC0	Streptococcus_phage	3.0e-125	79.9
SQF35385.1\|1769059_1769446_+	glyoxalase	NA	NA	NA	NA
SQF35387.1\|1769473_1770103_-	endonuclease III	NA	NA	NA	NA
SQF35389.1\|1770197_1770551_-	ArsC family transcription regulator	M1PLC0	Streptococcus_phage	6.7e-34	59.0
SQF35390.1\|1770686_1771862_-	D-3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	7.6e-175	79.5
SQF35392.1\|1771874_1772966_-	3-phosphoserine/phosphohydroxythreonine aminotransferase	M1Q1P2	Streptococcus_phage	7.3e-164	78.2
SQF35393.1\|1773225_1774092_-	tetrapyrrole methylase family protein	M1PLC5	Streptococcus_phage	3.7e-110	71.5
SQF35395.1\|1774094_1774412_-	DNA replication intiation control protein YabA	M1PFV3	Streptococcus_phage	1.7e-28	59.0
SQF35397.1\|1774436_1775327_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	3.0e-83	54.8
SQF35399.1\|1775323_1775962_-	thymidylate kinase	M1PSC7	Streptococcus_phage	8.3e-83	70.7
SQF35401.1\|1776274_1777162_+	YitT family protein	M1Q1P6	Streptococcus_phage	7.0e-88	55.6
SQF35403.1\|1777194_1777851_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	2.1e-81	73.1
SQF35404.1\|1778226_1778937_-	branched-chain amino acid transport protein	G9BWD6	Planktothrix_phage	2.1e-18	28.1
SQF35406.1\|1778936_1779701_-	putative branched-chain amino acid transport protein	A0A2H4PQG7	Staphylococcus_phage	3.0e-15	25.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483346

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection