CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483350	Staphylococcus aureus strain NCTC11940 genome assembly, chromosome: 1	11 crisprs	cas3,DEDDh,DinG,csa3,WYL	8	2	11	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483350_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_1

366721-366821

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483350_1

>merge|LS483350|1|366721-366821|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>LS483350|1|1|366721-366821|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF43759.1\|366837_367794_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|235334
LS483350.1\|SQF43753.1\|362575_363145_-\|Alkyl-hydroperoxide-reductase-protein-C	unknown	unknown	gnl\|CDD\|211789
LS483350.1\|SQF43777.1\|375840_376041_-\|Domain-of-uncharacterised-function-(DUF3173)	unknown	unknown	gnl\|CDD\|371495
LS483350.1\|SQF43747.1\|359965_360592_-\|lipoprotein	unknown	unknown	gnl\|CDD\|380196
LS483350.1\|SQF43744.1\|358680_359262_+\|truncated-phosphoglycerate-mutase-family-protein	unknown	unknown	gnl\|CDD\|223483
LS483350.1\|SQF43755.1\|363585_364392_+\|Chromate-reductase	unknown	unknown	gnl\|CDD\|380322
LS483350.1\|SQF43766.1\|370214_371483_+\|Xanthine-permease	unknown	unknown	gnl\|CDD\|274468
LS483350.1\|SQF43750.1\|360664_360922_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF43763.1\|368716_369124_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378584
LS483350.1\|SQF43741.1\|358003_358255_+\|transglycosylase-associated-family-protein	unknown	unknown	gnl\|CDD\|225170
LS483350.1\|SQF43739.1\|357440_357704_-\|XRE-family-transcription-regulator,-putative	unknown	unknown	gnl\|CDD\|238045
LS483350.1\|SQF43775.1\|374620_375814_-\|integrase-like-protein	unknown	unknown	gnl\|CDD\|271189
LS483350.1\|SQF43770.1\|371520_372987_+\|Inosine-5-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
LS483350.1\|SQF43761.1\|367911_368574_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF43778.1\|376538_376769_-\|Polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|378900
LS483350.1\|SQF43745.1\|359327_359714_-\|membrane-spanning-protein	unknown	unknown	unknown
LS483350.1\|SQF43765.1\|369636_370215_+\|Xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
LS483350.1\|SQF43752.1\|361036_362560_-\|Alkyl-hydroperoxide-reductase-protein-F	unknown	unknown	gnl\|CDD\|237942
LS483350.1\|SQF43757.1\|364472_365861_-\|Sodium:dicarboxylate-symporter-family-protein	unknown	unknown	gnl\|CDD\|224736
LS483350.1\|SQF43772.1\|373011_374553_+\|GMP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|234614

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF43759.1\|366837_367794_-\|DNA-binding-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000748442
LS483350.1\|SQF43753.1\|362575_363145_-\|Alkyl-hydroperoxide-reductase-protein-C	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
LS483350.1\|SQF43777.1\|375840_376041_-\|Domain-of-uncharacterised-function-(DUF3173)	gnl\|CDD\|371495	pfam11372, DUF3173, Domain of unknown function (DUF3173). This family of proteins with unknown function appears to be restricted to Firmicutes. These proteins appear to be distantly related to HHH domains and are therefore likely to be DNA-binding. Genomic environment-visualisation confirms the likely function as being DNA-binding, as this short protein lies very closely between an integrase and a replication protein (http://www.microbesonline.org/).	2.02242e-22
LS483350.1\|SQF43747.1\|359965_360592_-\|lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.67126e-71
LS483350.1\|SQF43744.1\|358680_359262_+\|truncated-phosphoglycerate-mutase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.78414e-49
LS483350.1\|SQF43755.1\|363585_364392_+\|Chromate-reductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.24225e-88
LS483350.1\|SQF43763.1\|368716_369124_-\|transcriptional-regulator	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.0219e-12
LS483350.1\|SQF43741.1\|358003_358255_+\|transglycosylase-associated-family-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.58864e-09
LS483350.1\|SQF43739.1\|357440_357704_-\|XRE-family-transcription-regulator,-putative	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.0037414
LS483350.1\|SQF43775.1\|374620_375814_-\|integrase-like-protein	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.18096e-47
LS483350.1\|SQF43770.1\|371520_372987_+\|Inosine-5-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
LS483350.1\|SQF43778.1\|376538_376769_-\|Polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|378900	pfam12645, HTH_16, Helix-turn-helix domain. This domain appears to be a helix-turn-helix domain suggesting that this might be a transcriptional regulatory protein. Some members of this family are annotated as conjugative transposon domains.	2.04673e-25
LS483350.1\|SQF43766.1\|370214_371483_+\|Xanthine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	2.75897e-170
LS483350.1\|SQF43765.1\|369636_370215_+\|Xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
LS483350.1\|SQF43752.1\|361036_362560_-\|Alkyl-hydroperoxide-reductase-protein-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
LS483350.1\|SQF43757.1\|364472_365861_-\|Sodium:dicarboxylate-symporter-family-protein	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
LS483350.1\|SQF43772.1\|373011_374553_+\|GMP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0

>LS483350.1|SQF43757.1|364472_365861_-|Sodium:dicarboxylate-symporter-family-protein
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLIYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFDSNDNAALTSH
>LS483350.1|SQF43755.1|363585_364392_+|Chromate-reductase
MQYEDFKLIVKYRGVGNVSEHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>LS483350.1|SQF43753.1|362575_363145_-|Alkyl-hydroperoxide-reductase-protein-C
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>LS483350.1|SQF43752.1|361036_362560_-|Alkyl-hydroperoxide-reductase-protein-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDDKSKELKDLLTEITDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKKLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMNTGEEHLLNLDGIFVQIGLLPNTSWLNDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>LS483350.1|SQF43750.1|360664_360922_-|Uncharacterised-protein
MLKVCTSRKQINMKNDIEKEKYVNEIIMLLRTIPTSKLVQPIMQLFIDKAILNNVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>LS483350.1|SQF43747.1|359965_360592_-|lipoprotein
MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>LS483350.1|SQF43745.1|359327_359714_-|membrane-spanning-protein
MMKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVEKNDSP
>LS483350.1|SQF43744.1|358680_359262_+|truncated-phosphoglycerate-mutase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSRAEAVDLKVENCKPYIIE
>LS483350.1|SQF43741.1|358003_358255_+|transglycosylase-associated-family-protein
MFGFIGMLIVGGLIGWAAGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLILRAMRK
>LS483350.1|SQF43739.1|357440_357704_-|XRE-family-transcription-regulator,-putative
MNMHILYNLRTKHNLEIDELAQQLNEKYGTKYEAHQIWEWENHHHEPKFKDAMHLADFFDAPYEMFLESKVKEYQKHLEEVDIRMDK
>LS483350.1|SQF43759.1|366837_367794_-|DNA-binding-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>LS483350.1|SQF43761.1|367911_368574_-|Uncharacterised-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>LS483350.1|SQF43763.1|368716_369124_-|transcriptional-regulator
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHQEVHENNSAYEEIDITHFAEASKGPKA
>LS483350.1|SQF43765.1|369636_370215_+|Xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>LS483350.1|SQF43766.1|370214_371483_+|Xanthine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILLLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>LS483350.1|SQF43770.1|371520_372987_+|Inosine-5-monophosphate-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>LS483350.1|SQF43772.1|373011_374553_+|GMP-synthase-(glutamine-hydrolyzing)
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCRGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>LS483350.1|SQF43775.1|374620_375814_-|integrase-like-protein
MVKDPIKKAKNGTYYFRANLGYDSKGKKIQKYRSGFNTKKEAREEYSKLLLMKPEELSENKDKMTFKHYIFEIFLPWYKTQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLKLSKKCKSSYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVISLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQSNYRFVEPKTKASVRHIVLDKCTLTYLSEWKEVQQNLIQTDFVMSYNGIPTQKHTLSYAIERYAKLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETTLGTYGHLYPNSNFEVANKLNGAISFKEAKQNYDTSPKNQFTVDYLRNKEMKKVQ
>LS483350.1|SQF43777.1|375840_376041_-|Domain-of-uncharacterised-function-(DUF3173)
MITVTKKDLVELGYGTSFSADIIKKAKELMITKGHIYYQSRKLDRVPREAVEEILGIRFSNENRSE
>LS483350.1|SQF43778.1|376538_376769_-|Polyribonucleotide-nucleotidyltransferase
MKTAYPRVPFPLIVKATDGDVEAINQIVKHYRGYTSKRSLRRMTDEYGNSHMVIDETLRGRMETKLISKILSFEIK

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Crispr_ID: LS483350_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_2

639433-639525

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483350_2

>merge|LS483350|2|639433-639525|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>LS483350|2|2|639433-639525|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF44200.1\|631972_632449_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LS483350.1\|SQF44226.1\|645864_646239_-\|Staphylococcal-accessory-regulator-A-(SarA)	unknown	unknown	gnl\|CDD\|130944
LS483350.1\|SQF44221.1\|643272_643779_+\|exported-protein	unknown	unknown	unknown
LS483350.1\|SQF44204.1\|634831_635842_+\|Alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|181842
LS483350.1\|SQF44228.1\|647186_648116_-\|Integral-membrane-protein	unknown	unknown	gnl\|CDD\|225778
LS483350.1\|SQF44198.1\|631267_631804_+\|putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-ywqN	unknown	unknown	gnl\|CDD\|223728
LS483350.1\|SQF44203.1\|633826_634333_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|378039
LS483350.1\|SQF44219.1\|642336_643137_+\|3-oxoadipate-enol-lactonase	unknown	unknown	gnl\|CDD\|223669
LS483350.1\|SQF44208.1\|636116_636533_+\|Uncharacterized-beta-barrel-protein-ywiB	unknown	unknown	gnl\|CDD\|226896
LS483350.1\|SQF44210.1\|636529_638191_+\|Arginyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234964
LS483350.1\|SQF44224.1\|644825_645614_+\|hypothetical-esterase/lipase	unknown	unknown	gnl\|CDD\|223669
LS483350.1\|SQF44206.1\|635916_636024_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF44214.1\|639593_640481_+\|Periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|238563
LS483350.1\|SQF44223.1\|643940_644657_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF44212.1\|638579_639215_+\|endonuclease-III-domain-protein	unknown	unknown	gnl\|CDD\|225140
LS483350.1\|SQF44217.1\|641633_642353_+\|L-2-haloalkanoic-acid-dehalogenase	unknown	unknown	gnl\|CDD\|223943
LS483350.1\|SQF44215.1\|640592_641579_+\|transporter	unknown	unknown	gnl\|CDD\|376439
LS483350.1\|SQF44230.1\|648310_648535_-\|Protein-of-uncharacterised-function-(DUF2922)	unknown	unknown	gnl\|CDD\|378571
LS483350.1\|SQF44201.1\|632488_633784_+\|Deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|224004
LS483350.1\|SQF44195.1\|630118_631057_+\|Oxidoreductase-ion-channel	unknown	unknown	gnl\|CDD\|381309

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF44200.1\|631972_632449_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
LS483350.1\|SQF44226.1\|645864_646239_-\|Staphylococcal-accessory-regulator-A-(SarA)	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
LS483350.1\|SQF44204.1\|634831_635842_+\|Alcohol-dehydrogenase	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
LS483350.1\|SQF44228.1\|647186_648116_-\|Integral-membrane-protein	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	7.93315e-37
LS483350.1\|SQF44198.1\|631267_631804_+\|putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-ywqN	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
LS483350.1\|SQF44203.1\|633826_634333_+\|Putative-cytosolic-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	1.08203e-97
LS483350.1\|SQF44219.1\|642336_643137_+\|3-oxoadipate-enol-lactonase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.35732e-24
LS483350.1\|SQF44208.1\|636116_636533_+\|Uncharacterized-beta-barrel-protein-ywiB	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	2.62525e-58
LS483350.1\|SQF44210.1\|636529_638191_+\|Arginyl-tRNA-synthetase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
LS483350.1\|SQF44214.1\|639593_640481_+\|Periplasmic-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	8.54601e-73
LS483350.1\|SQF44224.1\|644825_645614_+\|hypothetical-esterase/lipase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.55978e-34
LS483350.1\|SQF44212.1\|638579_639215_+\|endonuclease-III-domain-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	3.98158e-90
LS483350.1\|SQF44217.1\|641633_642353_+\|L-2-haloalkanoic-acid-dehalogenase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
LS483350.1\|SQF44215.1\|640592_641579_+\|transporter	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.17074e-49
LS483350.1\|SQF44230.1\|648310_648535_-\|Protein-of-uncharacterised-function-(DUF2922)	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.74707e-13
LS483350.1\|SQF44201.1\|632488_633784_+\|Deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.70707e-150
LS483350.1\|SQF44195.1\|630118_631057_+\|Oxidoreductase-ion-channel	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	7.3194e-168

>LS483350.1|SQF44212.1|638579_639215_+|endonuclease-III-domain-protein
MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>LS483350.1|SQF44210.1|636529_638191_+|Arginyl-tRNA-synthetase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>LS483350.1|SQF44208.1|636116_636533_+|Uncharacterized-beta-barrel-protein-ywiB
MDKKVSIQTKQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>LS483350.1|SQF44206.1|635916_636024_+|Uncharacterised-protein
MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN
>LS483350.1|SQF44204.1|634831_635842_+|Alcohol-dehydrogenase
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>LS483350.1|SQF44203.1|633826_634333_+|Putative-cytosolic-protein
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>LS483350.1|SQF44201.1|632488_633784_+|Deoxyguanosinetriphosphate-triphosphohydrolase
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>LS483350.1|SQF44200.1|631972_632449_+|acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>LS483350.1|SQF44198.1|631267_631804_+|putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-ywqN
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>LS483350.1|SQF44195.1|630118_631057_+|Oxidoreductase-ion-channel
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDNNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVVENIKAADIVLSDDEIQYIDELFPIED
>LS483350.1|SQF44214.1|639593_640481_+|Periplasmic-binding-protein
MKKSLIAFILIFMLVLSGCGMKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>LS483350.1|SQF44215.1|640592_641579_+|transporter
MNVIIDERKENAMTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>LS483350.1|SQF44217.1|641633_642353_+|L-2-haloalkanoic-acid-dehalogenase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>LS483350.1|SQF44219.1|642336_643137_+|3-oxoadipate-enol-lactonase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMSGIIGADISVRYPEFTSSLTLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTAAFINKHHDEKHV
>LS483350.1|SQF44221.1|643272_643779_+|exported-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>LS483350.1|SQF44223.1|643940_644657_+|Uncharacterised-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>LS483350.1|SQF44224.1|644825_645614_+|hypothetical-esterase/lipase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLKFLKSVS
>LS483350.1|SQF44226.1|645864_646239_-|Staphylococcal-accessory-regulator-A-(SarA)
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>LS483350.1|SQF44228.1|647186_648116_-|Integral-membrane-protein
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF
>LS483350.1|SQF44230.1|648310_648535_-|Protein-of-uncharacterised-function-(DUF2922)
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVARDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK

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Crispr_ID: LS483350_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_3

755247-755329

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483350_3

>merge|LS483350|3|755247-755329|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>LS483350|3|3|755247-755329|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF44407.1\|742141_742852_+\|Urea-amidolyase	unknown	unknown	gnl\|CDD\|224960
LS483350.1\|SQF44444.1\|765261_766275_+\|FatD	unknown	unknown	gnl\|CDD\|226965
LS483350.1\|SQF44410.1\|744313_746254_+\|glycerol-phosphate-lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
LS483350.1\|SQF44411.1\|746530_748408_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|223562
LS483350.1\|SQF44414.1\|748419_750201_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
LS483350.1\|SQF44421.1\|753146_754205_+\|histidinol-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|235106
LS483350.1\|SQF44408.1\|742835_743840_+\|allophanate-hydrolase-subunit-2-family-protein	unknown	unknown	gnl\|CDD\|224895
LS483350.1\|SQF44434.1\|759330_760197_-\|Integral-membrane-domain-protein	unknown	unknown	gnl\|CDD\|223769
LS483350.1\|SQF44405.1\|741173_741782_+\|Aminodeoxychorismate-lyase-PabAc	unknown	unknown	gnl\|CDD\|376449
LS483350.1\|SQF44436.1\|760997_761396_+\|Nrdi	unknown	unknown	gnl\|CDD\|224694
LS483350.1\|SQF44438.1\|761358_763464_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
LS483350.1\|SQF44427.1\|755777_756695_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	unknown	unknown	gnl\|CDD\|224513
LS483350.1\|SQF44419.1\|751392_752907_+\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	unknown	unknown	gnl\|CDD\|270328
LS483350.1\|SQF44417.1\|750422_751400_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	unknown	unknown	gnl\|CDD\|224050
LS483350.1\|SQF44443.1\|763581_764553_+\|ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
LS483350.1\|SQF44432.1\|758810_759311_-\|NADPH-dependent-preQ0-reductase	unknown	unknown	gnl\|CDD\|223851
LS483350.1\|SQF44445.1\|766261_767218_+\|Iron-compound-ABC-uptake-transporter-permease-protein	unknown	unknown	gnl\|CDD\|226964
LS483350.1\|SQF44425.1\|754555_755098_+\|5'-3'-deoxyribonucleotidase,-putative	unknown	unknown	gnl\|CDD\|226895
LS483350.1\|SQF44430.1\|756964_758470_-\|Di/tripeptide-permease-YjdL	unknown	unknown	gnl\|CDD\|225646
LS483350.1\|SQF44446.1\|767214_767976_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226963

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF44407.1\|742141_742852_+\|Urea-amidolyase	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.29969e-94
LS483350.1\|SQF44444.1\|765261_766275_+\|FatD	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.27667e-149
LS483350.1\|SQF44410.1\|744313_746254_+\|glycerol-phosphate-lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
LS483350.1\|SQF44411.1\|746530_748408_+\|ABC-transporter	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
LS483350.1\|SQF44414.1\|748419_750201_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
LS483350.1\|SQF44421.1\|753146_754205_+\|histidinol-phosphate-aminotransferase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
LS483350.1\|SQF44408.1\|742835_743840_+\|allophanate-hydrolase-subunit-2-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
LS483350.1\|SQF44434.1\|759330_760197_-\|Integral-membrane-domain-protein	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.8323e-10
LS483350.1\|SQF44405.1\|741173_741782_+\|Aminodeoxychorismate-lyase-PabAc	gnl\|CDD\|376449	pfam01063, Aminotran_4, Amino-transferase class IV. The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.	5.60043e-39
LS483350.1\|SQF44436.1\|760997_761396_+\|Nrdi	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
LS483350.1\|SQF44438.1\|761358_763464_+\|ribonucleotide-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
LS483350.1\|SQF44427.1\|755777_756695_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.10512e-78
LS483350.1\|SQF44419.1\|751392_752907_+\|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
LS483350.1\|SQF44417.1\|750422_751400_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
LS483350.1\|SQF44443.1\|763581_764553_+\|ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
LS483350.1\|SQF44432.1\|758810_759311_-\|NADPH-dependent-preQ0-reductase	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
LS483350.1\|SQF44445.1\|766261_767218_+\|Iron-compound-ABC-uptake-transporter-permease-protein	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	4.81847e-122
LS483350.1\|SQF44425.1\|754555_755098_+\|5'-3'-deoxyribonucleotidase,-putative	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.15481e-107
LS483350.1\|SQF44430.1\|756964_758470_-\|Di/tripeptide-permease-YjdL	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
LS483350.1\|SQF44446.1\|767214_767976_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.31412e-150

>LS483350.1|SQF44425.1|754555_755098_+|5'-3'-deoxyribonucleotidase,-putative
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>LS483350.1|SQF44421.1|753146_754205_+|histidinol-phosphate-aminotransferase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>LS483350.1|SQF44419.1|751392_752907_+|Osmotically-activated-L-carnitine/choline-ABC-transporter,-permease-protein-OpuCB
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>LS483350.1|SQF44417.1|750422_751400_+|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>LS483350.1|SQF44414.1|748419_750201_+|ATP-dependent-DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>LS483350.1|SQF44411.1|746530_748408_+|ABC-transporter
MEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREENEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>LS483350.1|SQF44410.1|744313_746254_+|glycerol-phosphate-lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>LS483350.1|SQF44408.1|742835_743840_+|allophanate-hydrolase-subunit-2-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>LS483350.1|SQF44407.1|742141_742852_+|Urea-amidolyase
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>LS483350.1|SQF44405.1|741173_741782_+|Aminodeoxychorismate-lyase-PabAc
MQLFETMKIDNGHIPRLTYHTNRIKCSSERLNFKFDEHAWRNELNDVTTKYHSGQYRLKIVLNAESKFETIVSPLPEKSSFTAKFQVLPKVVNPTFIKNKTTERKHLAHNHETDLILLTSEDGKVLEFDIGNIVIEEDGKWYTPSYKDDFLKGCMRDYLIDSDKLVEKDFNKNELIYKYHNNEIRLFLINSLREVADVHLCL
>LS483350.1|SQF44427.1|755777_756695_-|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>LS483350.1|SQF44430.1|756964_758470_-|Di/tripeptide-permease-YjdL
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>LS483350.1|SQF44432.1|758810_759311_-|NADPH-dependent-preQ0-reductase
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>LS483350.1|SQF44434.1|759330_760197_-|Integral-membrane-domain-protein
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>LS483350.1|SQF44436.1|760997_761396_+|Nrdi
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>LS483350.1|SQF44438.1|761358_763464_+|ribonucleotide-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>LS483350.1|SQF44443.1|763581_764553_+|ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>LS483350.1|SQF44444.1|765261_766275_+|FatD
MIMIIINLKGEKFVMKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ
>LS483350.1|SQF44445.1|766261_767218_+|Iron-compound-ABC-uptake-transporter-permease-protein
MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ
>LS483350.1|SQF44446.1|767214_767976_+|Iron-compound-ABC-uptake-transporter-ATP-binding-protein
MIQVENLTKTINNQMILEDISIDIEKGKLTSLIGPNGAGKSTLLSAICRLIRFENGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFPYSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGQLVKSDLKDNVIQSSVLSDLYDMNIQIEHIRNQRICLYFKD

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Crispr_ID: LS483350_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_4

801795-801880

Unclear

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483350_4

>merge|LS483350|4|801795-801880|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>LS483350|4|4|801795-801880|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTGTGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF44481.1\|808277_808907_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|234750
LS483350.1\|SQF44474.1\|798991_800431_+\|TPR-domain-protein	unknown	unknown	gnl\|CDD\|276808
LS483350.1\|SQF44480.1\|806672_807542_-\|Cell-division-inhibitor	unknown	unknown	gnl\|CDD\|224015
LS483350.1\|SQF44469.1\|791212_793198_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
LS483350.1\|SQF44472.1\|797651_798491_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
LS483350.1\|SQF44476.1\|802312_803224_+\|ATP-binding-protein-UPF0042,-contains-P-loop	unknown	unknown	gnl\|CDD\|224574
LS483350.1\|SQF44471.1\|796713_797646_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
LS483350.1\|SQF44475.1\|800497_801433_+\|Thioredoxin-reductase	unknown	unknown	gnl\|CDD\|273540
LS483350.1\|SQF44466.1\|789047_789887_+\|LysM-domain-protein	unknown	unknown	gnl\|CDD\|226451
LS483350.1\|SQF44473.1\|798498_798984_+\|O-acetyltransferase	unknown	unknown	gnl\|CDD\|100053
LS483350.1\|SQF44479.1\|805842_806430_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
LS483350.1\|SQF44484.1\|811764_812955_+\|Phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
LS483350.1\|SQF44468.1\|790707_790944_+\|putative-DUF2198-containing-protein	unknown	unknown	gnl\|CDD\|227234
LS483350.1\|SQF44477.1\|803220_804216_+\|2-phospho-L-lactate-transferase-like-protein	unknown	unknown	gnl\|CDD\|211689
LS483350.1\|SQF44485.1\|813076_813838_+\|triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
LS483350.1\|SQF44467.1\|790060_790711_+\|hydrolase	unknown	unknown	gnl\|CDD\|378993
LS483350.1\|SQF44470.1\|793205_796052_+\|Excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
LS483350.1\|SQF44483.1\|810615_811626_+\|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
LS483350.1\|SQF44478.1\|804325_805270_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
LS483350.1\|SQF44482.1\|809549_810563_+\|Central-glycolytic-genes-regulator	unknown	unknown	gnl\|CDD\|225263

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF44481.1\|808277_808907_+\|Uncharacterised-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	5.85535e-05
LS483350.1\|SQF44474.1\|798991_800431_+\|TPR-domain-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.31987e-06
LS483350.1\|SQF44480.1\|806672_807542_-\|Cell-division-inhibitor	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	1.35317e-146
LS483350.1\|SQF44469.1\|791212_793198_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
LS483350.1\|SQF44472.1\|797651_798491_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.39921e-119
LS483350.1\|SQF44476.1\|802312_803224_+\|ATP-binding-protein-UPF0042,-contains-P-loop	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
LS483350.1\|SQF44471.1\|796713_797646_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
LS483350.1\|SQF44475.1\|800497_801433_+\|Thioredoxin-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
LS483350.1\|SQF44466.1\|789047_789887_+\|LysM-domain-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	2.23913e-42
LS483350.1\|SQF44473.1\|798498_798984_+\|O-acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
LS483350.1\|SQF44479.1\|805842_806430_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
LS483350.1\|SQF44484.1\|811764_812955_+\|Phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
LS483350.1\|SQF44468.1\|790707_790944_+\|putative-DUF2198-containing-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
LS483350.1\|SQF44477.1\|803220_804216_+\|2-phospho-L-lactate-transferase-like-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
LS483350.1\|SQF44485.1\|813076_813838_+\|triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.84083e-146
LS483350.1\|SQF44467.1\|790060_790711_+\|hydrolase	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
LS483350.1\|SQF44470.1\|793205_796052_+\|Excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
LS483350.1\|SQF44483.1\|810615_811626_+\|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
LS483350.1\|SQF44478.1\|804325_805270_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
LS483350.1\|SQF44482.1\|809549_810563_+\|Central-glycolytic-genes-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92

>LS483350.1|SQF44475.1|800497_801433_+|Thioredoxin-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>LS483350.1|SQF44474.1|798991_800431_+|TPR-domain-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQGELIIAEKVDLSDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>LS483350.1|SQF44473.1|798498_798984_+|O-acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>LS483350.1|SQF44472.1|797651_798491_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>LS483350.1|SQF44471.1|796713_797646_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>LS483350.1|SQF44470.1|793205_796052_+|Excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>LS483350.1|SQF44469.1|791212_793198_+|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>LS483350.1|SQF44468.1|790707_790944_+|putative-DUF2198-containing-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>LS483350.1|SQF44467.1|790060_790711_+|hydrolase
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>LS483350.1|SQF44466.1|789047_789887_+|LysM-domain-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>LS483350.1|SQF44476.1|802312_803224_+|ATP-binding-protein-UPF0042,-contains-P-loop
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>LS483350.1|SQF44477.1|803220_804216_+|2-phospho-L-lactate-transferase-like-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>LS483350.1|SQF44478.1|804325_805270_+|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>LS483350.1|SQF44479.1|805842_806430_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>LS483350.1|SQF44480.1|806672_807542_-|Cell-division-inhibitor
MVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKALFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>LS483350.1|SQF44481.1|808277_808907_+|Uncharacterised-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDKASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>LS483350.1|SQF44482.1|809549_810563_+|Central-glycolytic-genes-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>LS483350.1|SQF44483.1|810615_811626_+|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>LS483350.1|SQF44484.1|811764_812955_+|Phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMVYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>LS483350.1|SQF44485.1|813076_813838_+|triosephosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK

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Crispr_ID: LS483350_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_5

852754-852835

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483350_5

>merge|LS483350|5|852754-852835|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>LS483350|5|5|852754-852835|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF44532.1\|844525_844906_+\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
LS483350.1\|SQF44554.1\|854316_855342_+\|Methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
LS483350.1\|SQF44563.1\|859072_859801_-\|staphylococcal-enterotoxin-Q	unknown	unknown	gnl\|CDD\|280949
LS483350.1\|SQF44543.1\|849315_850098_+\|Spectinomycin-9-O-adenylyltransferase	unknown	unknown	gnl\|CDD\|184296
LS483350.1\|SQF44535.1\|845084_845705_+\|Putative-uncharacterized-protein-truncated-SA	unknown	unknown	gnl\|CDD\|226395
LS483350.1\|SQF44545.1\|850223_850955_-\|rRNA-adenine-N-6-methyltransferase	unknown	unknown	gnl\|CDD\|366074
LS483350.1\|SQF44552.1\|853770_854067_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
LS483350.1\|SQF44547.1\|851463_852126_+\|methyltransferase-type-12	unknown	unknown	gnl\|CDD\|225136
LS483350.1\|SQF44556.1\|855334_856030_+\|Methionine-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|224922
LS483350.1\|SQF44551.1\|853388_853778_+\|DNA-primase/-small-primase-like-protein	unknown	unknown	gnl\|CDD\|224572
LS483350.1\|SQF44539.1\|846888_848781_+\|Transposase-B-from-transposon-Tn554	unknown	unknown	gnl\|CDD\|271187
LS483350.1\|SQF44559.1\|857012_858233_-\|prophage-L54a-integrase	unknown	unknown	gnl\|CDD\|271189
LS483350.1\|SQF44549.1\|852362_852650_+\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|226395
LS483350.1\|SQF44537.1\|845806_846892_+\|Transposase-A-from-transposon-Tn554	unknown	unknown	gnl\|CDD\|271186
LS483350.1\|SQF44567.1\|860859_861072_+\|pathogenicity-island-protein	unknown	unknown	gnl\|CDD\|379188
LS483350.1\|SQF44561.1\|858320_859049_-\|enterotoxin	unknown	unknown	gnl\|CDD\|280949
LS483350.1\|SQF44557.1\|856047_856869_+\|Methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
LS483350.1\|SQF44534.1\|844969_845083_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF44565.1\|859975_860710_-\|Helix-turn-helix-XRE-family-like-protein	unknown	unknown	gnl\|CDD\|238045
LS483350.1\|SQF44541.1\|848787_849165_+\|Transposase-for-transposon-Tn554	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF44532.1\|844525_844906_+\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	5.19502e-68
LS483350.1\|SQF44554.1\|854316_855342_+\|Methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
LS483350.1\|SQF44563.1\|859072_859801_-\|staphylococcal-enterotoxin-Q	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	7.79999e-28
LS483350.1\|SQF44543.1\|849315_850098_+\|Spectinomycin-9-O-adenylyltransferase	gnl\|CDD\|184296	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional.	2.99486e-84
LS483350.1\|SQF44535.1\|845084_845705_+\|Putative-uncharacterized-protein-truncated-SA	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	2.47784e-58
LS483350.1\|SQF44545.1\|850223_850955_-\|rRNA-adenine-N-6-methyltransferase	gnl\|CDD\|366074	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.	3.53992e-85
LS483350.1\|SQF44552.1\|853770_854067_+\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
LS483350.1\|SQF44547.1\|851463_852126_+\|methyltransferase-type-12	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	5.63343e-23
LS483350.1\|SQF44556.1\|855334_856030_+\|Methionine-ABC-transporter-permease-protein	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
LS483350.1\|SQF44551.1\|853388_853778_+\|DNA-primase/-small-primase-like-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	6.789e-37
LS483350.1\|SQF44567.1\|860859_861072_+\|pathogenicity-island-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	7.52525e-13
LS483350.1\|SQF44559.1\|857012_858233_-\|prophage-L54a-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.81902e-37
LS483350.1\|SQF44549.1\|852362_852650_+\|Putative-cytosolic-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	2.07128e-30
LS483350.1\|SQF44537.1\|845806_846892_+\|Transposase-A-from-transposon-Tn554	gnl\|CDD\|271186	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain. This family includes putative Transposase A from transposon Tn554. It belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	4.0175e-100
LS483350.1\|SQF44561.1\|858320_859049_-\|enterotoxin	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	3.87599e-25
LS483350.1\|SQF44557.1\|856047_856869_+\|Methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
LS483350.1\|SQF44539.1\|846888_848781_+\|Transposase-B-from-transposon-Tn554	gnl\|CDD\|271187	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain. This family includes putative Transposase B from transposon Tn554. It belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	6.6262e-52
LS483350.1\|SQF44565.1\|859975_860710_-\|Helix-turn-helix-XRE-family-like-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.1934e-12

>LS483350.1|SQF44549.1|852362_852650_+|Putative-cytosolic-protein
MFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>LS483350.1|SQF44547.1|851463_852126_+|methyltransferase-type-12
MNTIESQFDKVAEDYDFVNELLNDYSFFVSNMSPKKGRALDIGCGSGLLVEKLASYYDEVVGIDISNQMLDLAKSKRQLTNTVYLNMNAEQLNFNEKFDFIVSRTTFHHLDDIASVIQQMKELLNEEGRIVILDNVSEVETPPTYVYKLGAIQEFLPHCFKFGIKNAIRIYNHNTSKSWLEHLASDKYLSEQNYYDLYEKLLPGCQFHKMGWAMGVVWTK
>LS483350.1|SQF44545.1|850223_850955_-|rRNA-adenine-N-6-methyltransferase
MNQKNPKDTQNFITSKKHVKEILNHTNISKQDNVIEIGSGKGHFTKELVKMSRSVIAIEIDGGLCQVTKEAVNPSENIKVIQTDILKFSFPKHINYKIYGNIPYNISTDIVKRITFESQAKYSYLIVEKGFAKRLQNLQRALGLLLMVEMDIKMLKKVPPLYFHPKPSVDSVLIVLERHQPLISKKDYKKYRSFVYKWVNREYRVLFTKNQFRQALKHANVTNINKLSKEQFLSIFNSYKLFH
>LS483350.1|SQF44543.1|849315_850098_+|Spectinomycin-9-O-adenylyltransferase
MSNLINGKIPNQAIQTLKIVKDLFGSSIVGVYLFGSAVNGGLRINSDVDVLVVVNHSLPQLTRKKLTERLMTISGKIGNTDSVRPLEVTVINRSEVVPWQYPPKREFIYGEWLRGEFENGQIQEPSYDPDLAIVLAQARKNSISLFGPDSSSILVSVPLTDIRRAIKDSLPELIEGIKGDERNVILTLARMWQTVTTGEITSKDVAAEWAIPLLPKEHVTLLDIARKGYRGECDDKWEGLYSKVKALVKYMKNSIETSLN
>LS483350.1|SQF44541.1|848787_849165_+|Transposase-for-transposon-Tn554
MDKQVRNTTEIVRLAKQKSKKTREKVDKAISKFSIEGKVINFNSIAKEANVSKSWLYKEHDIRQRIESLRERQITANVVSKPKKSSRSEEILIKTLKRRVMELEKENKKLQNQIQKLYGDLYNKE
>LS483350.1|SQF44539.1|846888_848781_+|Transposase-B-from-transposon-Tn554
MNASSKRKIISQSEISKKIAVMNEEMQGFWANNSWDIRKCPHPSAIELSKNPALRNRWVRFERVKNLWLRTELKYFYFYHLNNGIWNAKTVWIRKGTVINKMLDFLDLKYPSITSITEVPIEKAMTEYRTYLTKRGVRITTTNYKITANQEKTPVKANSYYVTNLKQFMEFYENFYFDGEEWDKDVWDRRNLPLPDDKVNPTQYEYTINFKGFRNTYFKQLVKRYCKLRLNVDSFSYVSDIAQRLKEFFNFLDMKFKQVQRVHQLTRVEIEAYLSELNMMGIKPSTITGRISILEGLFSTLLRLEWDDVPSKILIYSEDYPKIPRAKPRFIDEFVLEQLNSHLDKLPEYIATMTMIVQECGMRISELCTLKKGCLLEDKDGDFFLKYYQWKMKKEHIVPISKEVALLIKVREDKVSEEFPDSEYLFPRKDGSPLKQETFRGELNKLAYEQNIVDKSGEIYRFHAHAFRHTVGTRMINNGMPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKFQEKLVTNNGDVLDLDEDNEVDDVELQWFKKNINAQVLPNGYCRLPVVAGGCPHANACLDCTHFCTSKQFLPQHEEQLERTEELLAIAKDKQWQRQVETNSRVKERLEQIIGSLTG
>LS483350.1|SQF44537.1|845806_846892_+|Transposase-A-from-transposon-Tn554
MKVQRIEVENKPYPLYLLLDKEYQLIEPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVGWLRYPSASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFLHHVNKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDACHTKRDKLILMLMYEGGLRIGEVLSLRLEDIVTWDNQIHLTPRDVNVNEAYIKLRKERTIHVSKELMSLYTDYLIYEYSEELEHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLERKEHKK
>LS483350.1|SQF44535.1|845084_845705_+|Putative-uncharacterized-protein-truncated-SA
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKFNHSIINNSS
>LS483350.1|SQF44534.1|844969_845083_+|Uncharacterised-protein
MKEKLLGTIIWSIATFYYSRMMEIMNLAILKIKIGGS
>LS483350.1|SQF44532.1|844525_844906_+|Glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVGISDESQIEALLTAEKYSEMIGE
>LS483350.1|SQF44551.1|853388_853778_+|DNA-primase/-small-primase-like-protein
MMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>LS483350.1|SQF44552.1|853770_854067_+|Thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>LS483350.1|SQF44554.1|854316_855342_+|Methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>LS483350.1|SQF44556.1|855334_856030_+|Methionine-ABC-transporter-permease-protein
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>LS483350.1|SQF44557.1|856047_856869_+|Methionine-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>LS483350.1|SQF44559.1|857012_858233_-|prophage-L54a-integrase
MWFEKFKNKNKETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
>LS483350.1|SQF44561.1|858320_859049_-|enterotoxin
MKKLISILLINIIILGVSNNASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKLVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
>LS483350.1|SQF44563.1|859072_859801_-|staphylococcal-enterotoxin-Q
MNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIPINLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNEPSFTYDLFYTGTGQAESFLKIYNDNKTIDAENFHLDVEISYEKTE
>LS483350.1|SQF44565.1|859975_860710_-|Helix-turn-helix-XRE-family-like-protein
MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNLLIGFKTHIEYKMGSESPFYEINNSYLDEILIMFINSSNSTISDRDPNELITQFNEYYDVTIKKKQNENSKIESDIFSNKIKLVKGTTKKEVIEKPYFDLNWLLTQNEYEVFFDRSFLLDNNFLNKKHFTEKDMYYYNVLNDNDLKTIKDLIVVFLLNKYNYIKNKDDFFNIFTNSEDDKTKRDALYKILYETD
>LS483350.1|SQF44567.1|860859_861072_+|pathogenicity-island-protein
MNNNLSLLMGKHRVTASKLSTVTGISRTSIHGLYHERTENPDTKTVMKLCEYFNITPNEFFGIIEKEGVK

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Crispr_ID: LS483350_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_6

1051859-1051946

Orphan

Consensus_repeat	Method
CCCCTAACAACTAAAAGTTGTAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483350_6

>merge|LS483350|6|1051859-1051946|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGGAAGGAGAGGGATACATGCGCCGAGCACATGCATAAAATCCCCTAACAACTAAAAGTTGTAAGG

>LS483350|6|6|1051859-1051946|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGG	AAGGAGAGGGATACATGCGCCGAGCACATGCATAAAAT
CCCCTAACAACTAAAAGTTGTAAGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF44939.1\|1042481_1043966_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
LS483350.1\|SQF44941.1\|1043958_1044987_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
LS483350.1\|SQF44942.1\|1044989_1045556_+\|Phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
LS483350.1\|SQF44959.1\|1053961_1055134_+\|LSU-m5C1962-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|224017
LS483350.1\|SQF44961.1\|1055187_1055730_+\|Radical-activating-enzyme-protein	unknown	unknown	gnl\|CDD\|368297
LS483350.1\|SQF44970.1\|1061048_1061711_+\|Trk-system-potassium-uptake-protein-trkA	unknown	unknown	gnl\|CDD\|223643
LS483350.1\|SQF44969.1\|1059896_1060916_+\|Cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
LS483350.1\|SQF44952.1\|1050796_1051372_-\|Substrate-specific-component-YkoE-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	unknown	unknown	gnl\|CDD\|227065
LS483350.1\|SQF44963.1\|1055883_1056150_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
LS483350.1\|SQF44950.1\|1049381_1050782_-\|Duplicated-ATPase-component-YkoD-of-energizing-module-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	unknown	unknown	gnl\|CDD\|213192
LS483350.1\|SQF44948.1\|1048582_1049389_-\|hydroxymethylpyrimidine-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|223692
LS483350.1\|SQF44954.1\|1051735_1051855_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF44946.1\|1047070_1048318_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|237507
LS483350.1\|SQF44944.1\|1045570_1047049_+\|IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
LS483350.1\|SQF44957.1\|1052241_1053537_+\|membrane-spanning-protein	unknown	unknown	unknown
LS483350.1\|SQF44937.1\|1040313_1042503_+\|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit	unknown	unknown	gnl\|CDD\|234921
LS483350.1\|SQF44964.1\|1056152_1057871_+\|Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system	unknown	unknown	gnl\|CDD\|224006
LS483350.1\|SQF44956.1\|1051955_1052090_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF44966.1\|1058107_1058341_-\|glutaredoxin	unknown	unknown	gnl\|CDD\|239274
LS483350.1\|SQF44967.1\|1058538_1059900_+\|Cytochrome-d-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF44939.1\|1042481_1043966_+\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
LS483350.1\|SQF44941.1\|1043958_1044987_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
LS483350.1\|SQF44942.1\|1044989_1045556_+\|Phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	7.23817e-92
LS483350.1\|SQF44959.1\|1053961_1055134_+\|LSU-m5C1962-methyltransferase-RlmI	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	5.6543e-145
LS483350.1\|SQF44961.1\|1055187_1055730_+\|Radical-activating-enzyme-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	0.00779365
LS483350.1\|SQF44970.1\|1061048_1061711_+\|Trk-system-potassium-uptake-protein-trkA	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	4.35421e-66
LS483350.1\|SQF44969.1\|1059896_1060916_+\|Cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	6.42118e-76
LS483350.1\|SQF44964.1\|1056152_1057871_+\|Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
LS483350.1\|SQF44963.1\|1055883_1056150_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	2.44795e-51
LS483350.1\|SQF44950.1\|1049381_1050782_-\|Duplicated-ATPase-component-YkoD-of-energizing-module-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.67975e-64
LS483350.1\|SQF44948.1\|1048582_1049389_-\|hydroxymethylpyrimidine-transport-system-permease-protein	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	7.39205e-29
LS483350.1\|SQF44952.1\|1050796_1051372_-\|Substrate-specific-component-YkoE-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine	gnl\|CDD\|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	4.34592e-70
LS483350.1\|SQF44946.1\|1047070_1048318_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|237507	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional.	0
LS483350.1\|SQF44944.1\|1045570_1047049_+\|IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
LS483350.1\|SQF44937.1\|1040313_1042503_+\|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
LS483350.1\|SQF44966.1\|1058107_1058341_-\|glutaredoxin	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	5.00495e-16
LS483350.1\|SQF44967.1\|1058538_1059900_+\|Cytochrome-d-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.48829e-165

>LS483350.1|SQF44954.1|1051735_1051855_+|Uncharacterised-protein
MKRDTYQSYLFNNSEEPVHNGLRIIVYKEEEGYMRRAHA
>LS483350.1|SQF44952.1|1050796_1051372_-|Substrate-specific-component-YkoE-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYDNL
>LS483350.1|SQF44950.1|1049381_1050782_-|Duplicated-ATPase-component-YkoD-of-energizing-module-of-thiamin-regulated-ECF-transporter-for-HydroxyMethylPyrimidine
MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELPMKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQLPREDMDALIINALNMVNLNVTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQTVVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPSRVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQLIKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDETIQLLKLLDLQNVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIKLFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
>LS483350.1|SQF44948.1|1048582_1049389_-|hydroxymethylpyrimidine-transport-system-permease-protein
MYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRRSLKMRYQMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDIIFIIVLIAIITMAYYCSITLPITGIDDVRLGRVG
>LS483350.1|SQF44946.1|1047070_1048318_+|phosphoribosylamine--glycine-ligase
MNVLVIGAGGREHALAYKLNQSNLVKQVFVIPGNEAMTPIAEVHTEISESDHQAILDFAKRQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDLNENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYKKVSQIQSDHLFYRHDIANKALQLK
>LS483350.1|SQF44944.1|1045570_1047049_+|IMP-cyclohydrolase
MKKAILSVSNKTGIVEFAKALTQLNYELYSTGGTKRILDEANVPVRSVSDLTHFPEIMDGRVKTLHPAVHGGILADRNKPQHLNELSEQHIDLIDMVVVNLYPFQQTVANPDVTMDEAIENIDIGGPTMLRAAAKNYKHVTTIVHPADYQEVLTRLRNDSLDESYRQSLMIKVFEHTAEYDEAIVRFFKGDKETLRYGENPQQSAYFVRTSNAKHTIAGAKQLHGKQLSYNNIKDADATLALVKKFDTPATVAVKHMNPCGVGIGDTIEQAFQHAYEADSQSIFGGIVALNRAVTPELAEQLHSIFLEVIIAPKFTDEALDILKQKKNVRLLEIDMTIDSNEEEFVSVSGGYLVQDKDNYVVPKEEMKVVTEVAPTDEQWEAMLLGWKVVPSVKSNAIILSNNKQTVGIGAGQMNRVGAAKIALERAIEINDHVALVSDGFFPMGDTVELAAQHGIKAIIQPGGSIKDQDSIDMANKHGIAMVVTGTRHFKH
>LS483350.1|SQF44942.1|1044989_1045556_+|Phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRKCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
>LS483350.1|SQF44941.1|1043958_1044987_+|Phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINESGIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDVSRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>LS483350.1|SQF44939.1|1042481_1043966_+|amidophosphoribosyltransferase
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>LS483350.1|SQF44937.1|1040313_1042503_+|Phosphoribosylformylglycinamidine-synthase,-synthetase-subunit
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGDHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKDYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGLLSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>LS483350.1|SQF44956.1|1051955_1052090_-|Uncharacterised-protein
MSNENQNKKAAEKAKEVEEKLKDKKEEKTEDINQTKQDIQDTLN
>LS483350.1|SQF44957.1|1052241_1053537_+|membrane-spanning-protein
MSFLRKHAEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKVDTHVHNVWEFLNAFFSEIIKVMSRFIGNFPIVSAIVIIIFGILVMLIGHTLLRTIKYDYDISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHFMWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRRALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAKRDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFVSGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLTEFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP
>LS483350.1|SQF44959.1|1053961_1055134_+|LSU-m5C1962-methyltransferase-RlmI
MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEGDIFQIVTDKSQYVATAYVGRQHKGLGWVLTYDKAQQINTAFFVKLFNTALAERDYYFNIDGTNAFRLFNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDSEYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRDQYAKERHVLNLFSYTGAFSAIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNASVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH
>LS483350.1|SQF44961.1|1055187_1055730_+|Radical-activating-enzyme-protein
MGFKNNLTSNLTNKIGNSVFKIENVDGKGAMPTTIQELRERRQRAEAIVKRKSLMSSTMSVVPIPGLDFGVDLKLMKDIIEDVNKIYGLDHKQVNSLGDDVKERIMSAAAIQGSQFIGKRISNAFLKIVIRDVAKRTAAKQTKWFPVVGQAVSASISYYFMNKIGKDHIQKCENVIKNVM
>LS483350.1|SQF44963.1|1055883_1056150_+|phosphocarrier-protein-HPr
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
>LS483350.1|SQF44964.1|1056152_1057871_+|Phosphoenolpyruvate-protein-phosphotransferase-of-PTS-system
MSKLIKGIAASDGVAIAKAYLLVEPDLTFDKNEKVTDVEGEVAKFNSAIEASKVELTKIRNNAEVQLGADKAAIFDAHLLVLDDPELIQPIQDKIKNENANAATALTDVTTQFVTIFESMDNEYMKERAADIRDVSKRVLSHILGVELPNPSMIDESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSHSAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADTVTVDGVHAELAANIGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLCLAQQDIFRPQLRALLRASVYGKLNIMFPMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLIQYTLAADRMSERVSYLYQPYNPSILRLVKQVIEASHKEGKWTGMCGEMAGDETAIPLLLGLGLDEFSMSATSILKARRQINGLSKNEMTELANRAVDCATQEEVIELVNNYVK
>LS483350.1|SQF44966.1|1058107_1058341_-|glutaredoxin
MSEIIVYTQNDCPPCTFVKNYLNEHHIDFEERNINNQQYRNEMIDFDAFSTPFILLNGNPMYHVDLDEINKVLNIQD
>LS483350.1|SQF44967.1|1058538_1059900_+|Cytochrome-d-ubiquinol-oxidase-subunit-I
MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
>LS483350.1|SQF44969.1|1059896_1060916_+|Cytochrome-d-ubiquinol-oxidase-subunit-II
MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFGISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
>LS483350.1|SQF44970.1|1061048_1061711_+|Trk-system-potassium-uptake-protein-trkA
MGKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAGQSIIDLDIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIATR

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Crispr_ID: LS483350_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_7

1136372-1136457

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483350_7

>merge|LS483350|7|1136372-1136457|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>LS483350|7|7|1136372-1136457|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF45115.1\|1138276_1139002_-\|Exotoxin	unknown	unknown	gnl\|CDD\|171855
LS483350.1\|SQF45101.1\|1132655_1132841_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF45126.1\|1145159_1145348_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|225382
LS483350.1\|SQF45122.1\|1143431_1143659_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF45111.1\|1136632_1137349_-\|Exotoxin	unknown	unknown	gnl\|CDD\|171995
LS483350.1\|SQF45117.1\|1139439_1140441_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
LS483350.1\|SQF45109.1\|1135934_1136132_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF45092.1\|1128296_1128626_+\|Extracellular-fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|289007
LS483350.1\|SQF45107.1\|1135804_1135951_+\|Doubtful-CDS.-No-database-matches	unknown	unknown	unknown
LS483350.1\|SQF45113.1\|1137456_1138182_-\|putative-exotoxin	unknown	unknown	gnl\|CDD\|106307
LS483350.1\|SQF45119.1\|1140460_1141396_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
LS483350.1\|SQF45093.1\|1128994_1129396_-\|FPRL1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
LS483350.1\|SQF45099.1\|1131483_1131834_+\|Involved-in-expression-of-fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|371594
LS483350.1\|SQF45097.1\|1130832_1131330_+\|Extracellular-fibrinogen-binding-protein-Efb	unknown	unknown	gnl\|CDD\|289007
LS483350.1\|SQF45124.1\|1143963_1144911_-\|putative-permease	unknown	unknown	gnl\|CDD\|187765
LS483350.1\|SQF45103.1\|1133462_1133696_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF45128.1\|1146259_1146394_+\|hemolytic-protein	unknown	unknown	gnl\|CDD\|368464
LS483350.1\|SQF45105.1\|1134172_1135132_-\|alpha-hemolysin	unknown	unknown	gnl\|CDD\|273388
LS483350.1\|SQF45095.1\|1130067_1130574_+\|membrane-protein	unknown	unknown	unknown
LS483350.1\|SQF45121.1\|1141567_1143124_+\|Arginine/ornithine-antiporter-ArcD	unknown	unknown	gnl\|CDD\|224207

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF45115.1\|1138276_1139002_-\|Exotoxin	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	8.18566e-161
LS483350.1\|SQF45126.1\|1145159_1145348_+\|DNA-binding-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
LS483350.1\|SQF45111.1\|1136632_1137349_-\|Exotoxin	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	1.29441e-152
LS483350.1\|SQF45117.1\|1139439_1140441_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
LS483350.1\|SQF45092.1\|1128296_1128626_+\|Extracellular-fibrinogen-binding-protein	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	4.63429e-22
LS483350.1\|SQF45113.1\|1137456_1138182_-\|putative-exotoxin	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	1.29834e-148
LS483350.1\|SQF45119.1\|1140460_1141396_+\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
LS483350.1\|SQF45093.1\|1128994_1129396_-\|FPRL1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	3.87075e-77
LS483350.1\|SQF45099.1\|1131483_1131834_+\|Involved-in-expression-of-fibrinogen-binding-protein	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
LS483350.1\|SQF45097.1\|1130832_1131330_+\|Extracellular-fibrinogen-binding-protein-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.40265e-27
LS483350.1\|SQF45124.1\|1143963_1144911_-\|putative-permease	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	1.39126e-83
LS483350.1\|SQF45128.1\|1146259_1146394_+\|hemolytic-protein	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13
LS483350.1\|SQF45105.1\|1134172_1135132_-\|alpha-hemolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.62736e-140
LS483350.1\|SQF45121.1\|1141567_1143124_+\|Arginine/ornithine-antiporter-ArcD	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0

>LS483350.1|SQF45109.1|1135934_1136132_+|Uncharacterised-protein
MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>LS483350.1|SQF45107.1|1135804_1135951_+|Doubtful-CDS.-No-database-matches
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>LS483350.1|SQF45105.1|1134172_1135132_-|alpha-hemolysin
MKTHIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWIDRSSERYKIDWEKEEMTN
>LS483350.1|SQF45103.1|1133462_1133696_-|Uncharacterised-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>LS483350.1|SQF45101.1|1132655_1132841_-|Uncharacterised-protein
MNKHINKKAAKLLEDYKKVQQRKSKETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>LS483350.1|SQF45099.1|1131483_1131834_+|Involved-in-expression-of-fibrinogen-binding-protein
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>LS483350.1|SQF45097.1|1130832_1131330_+|Extracellular-fibrinogen-binding-protein-Efb
MKNKLIAKSLLTLAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>LS483350.1|SQF45095.1|1130067_1130574_+|membrane-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>LS483350.1|SQF45093.1|1128994_1129396_-|FPRL1-inhibitory-protein
MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSITWY
>LS483350.1|SQF45092.1|1128296_1128626_+|Extracellular-fibrinogen-binding-protein
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKKQVNKKVVDAQKAVNFFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
>LS483350.1|SQF45111.1|1136632_1137349_-|Exotoxin
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>LS483350.1|SQF45113.1|1137456_1138182_-|putative-exotoxin
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>LS483350.1|SQF45115.1|1138276_1139002_-|Exotoxin
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>LS483350.1|SQF45117.1|1139439_1140441_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>LS483350.1|SQF45119.1|1140460_1141396_+|carbamate-kinase
MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>LS483350.1|SQF45121.1|1141567_1143124_+|Arginine/ornithine-antiporter-ArcD
MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
>LS483350.1|SQF45122.1|1143431_1143659_+|Uncharacterised-protein
MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>LS483350.1|SQF45124.1|1143963_1144911_-|putative-permease
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLKNVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ
>LS483350.1|SQF45126.1|1145159_1145348_+|DNA-binding-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>LS483350.1|SQF45128.1|1146259_1146394_+|hemolytic-protein
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF

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Crispr_ID: LS483350_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_8

1959531-1959609

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACCTGCA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LS483350_8

>merge|LS483350|8|1959531-1959609|CRISPRCasFinder
TGTTGGGGCCCCGCCAACCTGCACATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACCTGCA

>LS483350|8|8|1959531-1959609|CRISPRCasFinder
TGTTGGGGCCCCGCCAACCTGCA	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG
TGTTGGGGCCCCGCCAACCTGCA

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF46544.1\|1954278_1955496_+\|ribonuclease-BN	unknown	unknown	gnl\|CDD\|224214
LS483350.1\|SQF46556.1\|1959875_1960862_+\|Integral-membrane-protein	unknown	unknown	gnl\|CDD\|226614
LS483350.1\|SQF46537.1\|1951648_1952896_-\|aminopeptidase-PepS	unknown	unknown	gnl\|CDD\|376723
LS483350.1\|SQF46567.1\|1965779_1966850_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
LS483350.1\|SQF46551.1\|1957986_1958373_-\|putative-staphylococcal-protein	unknown	unknown	unknown
LS483350.1\|SQF46557.1\|1961292_1961706_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF46561.1\|1962663_1963977_-\|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|223840
LS483350.1\|SQF46572.1\|1969238_1970186_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	unknown	unknown	gnl\|CDD\|183982
LS483350.1\|SQF46563.1\|1964268_1964769_+\|Ferritin-like-protein-2	unknown	unknown	gnl\|CDD\|224445
LS483350.1\|SQF46542.1\|1953725_1954001_+\|exported-protein	unknown	unknown	unknown
LS483350.1\|SQF46541.1\|1953254_1953719_+\|Low-molecular-weight-protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|319971
LS483350.1\|SQF46565.1\|1965157_1965712_+\|DNA-polymerase-III-polC-type	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
LS483350.1\|SQF46570.1\|1967796_1969158_-\|RNA-methyltransferase,-TrmA-family	unknown	unknown	gnl\|CDD\|225174
LS483350.1\|SQF46546.1\|1955611_1956241_-\|Two-component-transcriptional-regulator-VraR,-LuxR-family	unknown	unknown	gnl\|CDD\|225107
LS483350.1\|SQF46553.1\|1958589_1959348_-\|Methionine-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
LS483350.1\|SQF46548.1\|1956230_1957274_-\|Sensor-histidine-kinase-VraS	unknown	unknown	gnl\|CDD\|226951
LS483350.1\|SQF46550.1\|1957270_1957972_-\|Transporter-yvqF	unknown	unknown	gnl\|CDD\|227100
LS483350.1\|SQF46569.1\|1967096_1967627_-\|Permease	unknown	unknown	gnl\|CDD\|378690
LS483350.1\|SQF46559.1\|1961930_1962662_-\|CobB/CobQ-like-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225974
LS483350.1\|SQF46539.1\|1952907_1953114_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|227177

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF46544.1\|1954278_1955496_+\|ribonuclease-BN	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	4.24482e-85
LS483350.1\|SQF46556.1\|1959875_1960862_+\|Integral-membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.20478e-76
LS483350.1\|SQF46537.1\|1951648_1952896_-\|aminopeptidase-PepS	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
LS483350.1\|SQF46567.1\|1965779_1966850_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
LS483350.1\|SQF46539.1\|1952907_1953114_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	2.64328e-25
LS483350.1\|SQF46565.1\|1965157_1965712_+\|DNA-polymerase-III-polC-type	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	1.92778e-75
LS483350.1\|SQF46559.1\|1961930_1962662_-\|CobB/CobQ-like-glutamine-amidotransferase-domain-containing-protein	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.33663e-121
LS483350.1\|SQF46563.1\|1964268_1964769_+\|Ferritin-like-protein-2	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
LS483350.1\|SQF46541.1\|1953254_1953719_+\|Low-molecular-weight-protein-tyrosine-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65
LS483350.1\|SQF46572.1\|1969238_1970186_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0
LS483350.1\|SQF46570.1\|1967796_1969158_-\|RNA-methyltransferase,-TrmA-family	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
LS483350.1\|SQF46546.1\|1955611_1956241_-\|Two-component-transcriptional-regulator-VraR,-LuxR-family	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.91794e-79
LS483350.1\|SQF46553.1\|1958589_1959348_-\|Methionine-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
LS483350.1\|SQF46548.1\|1956230_1957274_-\|Sensor-histidine-kinase-VraS	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
LS483350.1\|SQF46550.1\|1957270_1957972_-\|Transporter-yvqF	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
LS483350.1\|SQF46569.1\|1967096_1967627_-\|Permease	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.4991e-11
LS483350.1\|SQF46561.1\|1962663_1963977_-\|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	7.18737e-99

>LS483350.1|SQF46553.1|1958589_1959348_-|Methionine-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>LS483350.1|SQF46551.1|1957986_1958373_-|putative-staphylococcal-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>LS483350.1|SQF46550.1|1957270_1957972_-|Transporter-yvqF
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>LS483350.1|SQF46548.1|1956230_1957274_-|Sensor-histidine-kinase-VraS
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>LS483350.1|SQF46546.1|1955611_1956241_-|Two-component-transcriptional-regulator-VraR,-LuxR-family
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>LS483350.1|SQF46544.1|1954278_1955496_+|ribonuclease-BN
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIIFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDSNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>LS483350.1|SQF46542.1|1953725_1954001_+|exported-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>LS483350.1|SQF46541.1|1953254_1953719_+|Low-molecular-weight-protein-tyrosine-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>LS483350.1|SQF46539.1|1952907_1953114_-|Uncharacterized-protein-conserved-in-bacteria
MAMTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHE
>LS483350.1|SQF46537.1|1951648_1952896_-|aminopeptidase-PepS
MTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHEIKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAGKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF
>LS483350.1|SQF46556.1|1959875_1960862_+|Integral-membrane-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>LS483350.1|SQF46557.1|1961292_1961706_-|Uncharacterised-protein
MKPTKVILKDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEVKFEFALFDSDMDNLKHMDCDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVAKSDFTKFINELASLH
>LS483350.1|SQF46559.1|1961930_1962662_-|CobB/CobQ-like-glutamine-amidotransferase-domain-containing-protein
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHDFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEIQAKQVLIDRANRQKKSR
>LS483350.1|SQF46561.1|1962663_1963977_-|UDP-N-acetylmuramoylalanyl-D-glutamate--2,-6-diaminopimelate-ligase
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLYLNINDEKYDMKIAGDFNAYNALAAYTVLRELGLNEQTIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>LS483350.1|SQF46563.1|1964268_1964769_+|Ferritin-like-protein-2
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>LS483350.1|SQF46565.1|1965157_1965712_+|DNA-polymerase-III-polC-type
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKIHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>LS483350.1|SQF46567.1|1965779_1966850_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>LS483350.1|SQF46569.1|1967096_1967627_-|Permease
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
>LS483350.1|SQF46570.1|1967796_1969158_-|RNA-methyltransferase,-TrmA-family
MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIEYKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALFNLK
>LS483350.1|SQF46572.1|1969238_1970186_-|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)
MRKRARIIYNPTSGKELFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE

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Crispr_ID: LS483350_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_9

2197249-2197399

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of LS483350_9

>merge|LS483350|9|2197249-2197399|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>LS483350|9|9|2197249-2197399|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF47029.1\|2200714_2200990_-\|SAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|366887
LS483350.1\|SQF47017.1\|2188561_2189005_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	unknown	unknown	gnl\|CDD\|223854
LS483350.1\|SQF47019.1\|2190075_2191449_-\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
LS483350.1\|SQF47034.1\|2208073_2210206_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226234
LS483350.1\|SQF47032.1\|2204014_2205820_-\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LS483350.1\|SQF47031.1\|2203000_2203783_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
LS483350.1\|SQF47023.1\|2194571_2194892_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
LS483350.1\|SQF47021.1\|2192381_2193320_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
LS483350.1\|SQF47033.1\|2206500_2208039_+\|PTS-system,-mannitol-specific-IIBC-component	unknown	unknown	gnl\|CDD\|225123
LS483350.1\|SQF47025.1\|2196139_2197231_+\|Lytic-regulatory-protein	unknown	unknown	unknown
LS483350.1\|SQF47024.1\|2194893_2195874_+\|Cobalt-zinc-cadmium-resistance-protein	unknown	unknown	gnl\|CDD\|224151
LS483350.1\|SQF47022.1\|2193754_2194420_-\|oxidoreductase-ylbE	unknown	unknown	gnl\|CDD\|187554
LS483350.1\|SQF47018.1\|2189204_2189618_-\|thiol-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|225556
LS483350.1\|SQF47016.1\|2187730_2188441_+\|Purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
LS483350.1\|SQF47030.1\|2202075_2202933_-\|Putative-cytosolic-protein	unknown	unknown	gnl\|CDD\|223635
LS483350.1\|SQF47035.1\|2210217_2210652_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
LS483350.1\|SQF47026.1\|2198259_2198463_-\|resolvase-like-protein	unknown	unknown	gnl\|CDD\|239737
LS483350.1\|SQF47028.1\|2199445_2200618_-\|IS256-like-transposase	unknown	unknown	gnl\|CDD\|307151
LS483350.1\|SQF47027.1\|2198521_2199244_-\|SAP-domain-containing-protein	unknown	unknown	unknown
LS483350.1\|SQF47020.1\|2192120_2192351_-\|membrane-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF47023.1\|2194571_2194892_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
LS483350.1\|SQF47019.1\|2190075_2191449_-\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
LS483350.1\|SQF47032.1\|2204014_2205820_-\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LS483350.1\|SQF47031.1\|2203000_2203783_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	4.88024e-103
LS483350.1\|SQF47028.1\|2199445_2200618_-\|IS256-like-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	0
LS483350.1\|SQF47021.1\|2192381_2193320_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
LS483350.1\|SQF47033.1\|2206500_2208039_+\|PTS-system,-mannitol-specific-IIBC-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
LS483350.1\|SQF47035.1\|2210217_2210652_+\|PTS-system-mannitol-specific-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
LS483350.1\|SQF47024.1\|2194893_2195874_+\|Cobalt-zinc-cadmium-resistance-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
LS483350.1\|SQF47022.1\|2193754_2194420_-\|oxidoreductase-ylbE	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.74381e-48
LS483350.1\|SQF47018.1\|2189204_2189618_-\|thiol-disulfide-oxidoreductase	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
LS483350.1\|SQF47016.1\|2187730_2188441_+\|Purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
LS483350.1\|SQF47030.1\|2202075_2202933_-\|Putative-cytosolic-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.39747e-59
LS483350.1\|SQF47026.1\|2198259_2198463_-\|resolvase-like-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.78732e-14
LS483350.1\|SQF47017.1\|2188561_2189005_-\|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
LS483350.1\|SQF47029.1\|2200714_2200990_-\|SAP-domain-containing-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	1.32813e-06
LS483350.1\|SQF47034.1\|2208073_2210206_+\|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.09729e-67

>LS483350.1|SQF47025.1|2196139_2197231_+|Lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>LS483350.1|SQF47024.1|2194893_2195874_+|Cobalt-zinc-cadmium-resistance-protein
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>LS483350.1|SQF47023.1|2194571_2194892_+|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>LS483350.1|SQF47022.1|2193754_2194420_-|oxidoreductase-ylbE
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFENETD
>LS483350.1|SQF47021.1|2192381_2193320_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>LS483350.1|SQF47020.1|2192120_2192351_-|membrane-protein
MKQFLYIALVCGVIAGLGAFLHISQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>LS483350.1|SQF47019.1|2190075_2191449_-|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRISNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>LS483350.1|SQF47018.1|2189204_2189618_-|thiol-disulfide-oxidoreductase
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>LS483350.1|SQF47017.1|2188561_2189005_-|Non-specific-DNA-binding-protein-Dps-/-Iron-binding-ferritin-like-antioxidant-protein-/-Ferroxidase
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>LS483350.1|SQF47016.1|2187730_2188441_+|Purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>LS483350.1|SQF47026.1|2198259_2198463_-|resolvase-like-protein
MIVYQRKINIDTLKEFGCGCVYSERISGVKRTELVKCLDYLRESDTLVVYQLDRLGRTTKLLIELSQ
>LS483350.1|SQF47027.1|2198521_2199244_-|SAP-domain-containing-protein
MVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSNTLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVLDDDSLDILIQNQKYGNEF
>LS483350.1|SQF47028.1|2199445_2200618_-|IS256-like-transposase
MTQVHFTLKSEEIQSIIEYSVKDDVSKNILTTVFNQLMENQRTEYIQAKEYERTENRQSQRNGYYERSFTTRVGTLELKVPRTRDGHFSPTVFERYQRNEKALMASMLEMYVSGVSTRKVSKIVEELCGKSVSKSFVSSLTEQLEPMVNEWQNRLLSEKNYPYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYLKERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAREAKNRLIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
>LS483350.1|SQF47029.1|2200714_2200990_-|SAP-domain-containing-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIYKKTRPELQSILKSFGIKTTGNKPDLIKRIDG
>LS483350.1|SQF47030.1|2202075_2202933_-|Putative-cytosolic-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAEHFLAE
>LS483350.1|SQF47031.1|2203000_2203783_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMFAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>LS483350.1|SQF47032.1|2204014_2205820_-|glucosamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>LS483350.1|SQF47033.1|2206500_2208039_+|PTS-system,-mannitol-specific-IIBC-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>LS483350.1|SQF47034.1|2208073_2210206_+|PTS-system-mannitol-(Cryptic)-specific-transporter-subunit-IIA
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFISDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>LS483350.1|SQF47035.1|2210217_2210652_+|PTS-system-mannitol-specific-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA

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Crispr_ID: LS483350_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_10

2324062-2324255

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRT

3 spacers

The CRISPR arrays of LS483350_10

>merge|LS483350|10|2324062-2324255|CRT
TGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGTA

>LS483350|10|1|2324062-2324255|CRT
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTTCGTCACCTTCTG
TGTTGGGGCCCCGTTCCCCAACT	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG
TGTTGGGGCCCCGCCAACTTGTA

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF47228.1\|2326283_2326730_-\|Molybdenum-cofactor-biosynthesis-protein-E	unknown	unknown	gnl\|CDD\|223391
LS483350.1\|SQF47224.1\|2323355_2323706_-\|Transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
LS483350.1\|SQF47217.1\|2314998_2315316_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF47234.1\|2331360_2332032_-\|Molybdenum-transport-system-permease-protein-modB	unknown	unknown	gnl\|CDD\|226629
LS483350.1\|SQF47218.1\|2315502_2318670_-\|RND-multidrug-efflux-transporter;-Acriflavin-resistance-protein	unknown	unknown	gnl\|CDD\|223911
LS483350.1\|SQF47227.1\|2326044_2326278_-\|Molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
LS483350.1\|SQF47221.1\|2320683_2321448_-\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
LS483350.1\|SQF47226.1\|2325438_2326038_-\|molybdopterin-guanine-dinucleotide-biosynthesis-mobA	unknown	unknown	gnl\|CDD\|234725
LS483350.1\|SQF47231.1\|2329043_2329550_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
LS483350.1\|SQF47223.1\|2322042_2323254_+\|Major-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|341042
LS483350.1\|SQF47216.1\|2314589_2314754_+\|DNA-repair/chromosome-segregation-ATPase	unknown	unknown	unknown
LS483350.1\|SQF47220.1\|2320440_2320692_+\|membrane-protein	unknown	unknown	unknown
LS483350.1\|SQF47230.1\|2327225_2328485_-\|Molybdopterin-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|238452
LS483350.1\|SQF47233.1\|2330754_2331360_-\|Molybdenum-transport-ATP-binding-protein-modC	unknown	unknown	gnl\|CDD\|226628
LS483350.1\|SQF47225.1\|2324396_2325419_-\|Molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
LS483350.1\|SQF47219.1\|2318786_2320052_-\|FmhB-protein-of-FemAB-family-involved-in-peptidoglycan-interpeptide-biosynthesis	unknown	unknown	gnl\|CDD\|225224
LS483350.1\|SQF47232.1\|2329580_2330585_-\|Molybdopterin-biosynthesis-MoeB-protein	unknown	unknown	gnl\|CDD\|181084
LS483350.1\|SQF47222.1\|2321609_2322050_+\|MarR-family-regulatory-protein	unknown	unknown	gnl\|CDD\|197670
LS483350.1\|SQF47229.1\|2326743_2327229_-\|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
LS483350.1\|SQF47214.1\|2313548_2314457_-\|AEC-family-malonate-efflux-carrier	unknown	unknown	gnl\|CDD\|223751

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF47228.1\|2326283_2326730_-\|Molybdenum-cofactor-biosynthesis-protein-E	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
LS483350.1\|SQF47224.1\|2323355_2323706_-\|Transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
LS483350.1\|SQF47234.1\|2331360_2332032_-\|Molybdenum-transport-system-permease-protein-modB	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	5.00875e-95
LS483350.1\|SQF47218.1\|2315502_2318670_-\|RND-multidrug-efflux-transporter;-Acriflavin-resistance-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
LS483350.1\|SQF47227.1\|2326044_2326278_-\|Molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
LS483350.1\|SQF47221.1\|2320683_2321448_-\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
LS483350.1\|SQF47226.1\|2325438_2326038_-\|molybdopterin-guanine-dinucleotide-biosynthesis-mobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
LS483350.1\|SQF47231.1\|2329043_2329550_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	1.02752e-64
LS483350.1\|SQF47223.1\|2322042_2323254_+\|Major-facilitator-family-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.27961e-72
LS483350.1\|SQF47230.1\|2327225_2328485_-\|Molybdopterin-biosynthesis-protein-A	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	9.49423e-160
LS483350.1\|SQF47233.1\|2330754_2331360_-\|Molybdenum-transport-ATP-binding-protein-modC	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	3.32197e-115
LS483350.1\|SQF47225.1\|2324396_2325419_-\|Molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
LS483350.1\|SQF47219.1\|2318786_2320052_-\|FmhB-protein-of-FemAB-family-involved-in-peptidoglycan-interpeptide-biosynthesis	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	4.8324e-143
LS483350.1\|SQF47232.1\|2329580_2330585_-\|Molybdopterin-biosynthesis-MoeB-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	3.67241e-132
LS483350.1\|SQF47222.1\|2321609_2322050_+\|MarR-family-regulatory-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
LS483350.1\|SQF47229.1\|2326743_2327229_-\|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	4.35501e-50
LS483350.1\|SQF47214.1\|2313548_2314457_-\|AEC-family-malonate-efflux-carrier	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.24911e-42

>LS483350.1|SQF47224.1|2323355_2323706_-|Transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>LS483350.1|SQF47223.1|2322042_2323254_+|Major-facilitator-family-transporter
MTNQGSLNKSPIFTKSFTINFLVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>LS483350.1|SQF47222.1|2321609_2322050_+|MarR-family-regulatory-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>LS483350.1|SQF47221.1|2320683_2321448_-|glyoxalase-like-domain-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>LS483350.1|SQF47220.1|2320440_2320692_+|membrane-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIVLVIIHMGILAHSTYVYLY
>LS483350.1|SQF47219.1|2318786_2320052_-|FmhB-protein-of-FemAB-family-involved-in-peptidoglycan-interpeptide-biosynthesis
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMKTSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>LS483350.1|SQF47218.1|2315502_2318670_-|RND-multidrug-efflux-transporter;-Acriflavin-resistance-protein
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>LS483350.1|SQF47217.1|2314998_2315316_+|Uncharacterised-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>LS483350.1|SQF47216.1|2314589_2314754_+|DNA-repair/chromosome-segregation-ATPase
MSLENQLAELKYDYVRLQGDIEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>LS483350.1|SQF47214.1|2313548_2314457_-|AEC-family-malonate-efflux-carrier
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFVMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVYVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLTFIGMTTNLTIIISIIILYVYQAVFV
>LS483350.1|SQF47225.1|2324396_2325419_-|Molybdenum-cofactor-biosynthesis-protein-A
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>LS483350.1|SQF47226.1|2325438_2326038_-|molybdopterin-guanine-dinucleotide-biosynthesis-mobA
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>LS483350.1|SQF47227.1|2326044_2326278_-|Molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>LS483350.1|SQF47228.1|2326283_2326730_-|Molybdenum-cofactor-biosynthesis-protein-E
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>LS483350.1|SQF47229.1|2326743_2327229_-|Molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>LS483350.1|SQF47230.1|2327225_2328485_-|Molybdopterin-biosynthesis-protein-A
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFVDGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>LS483350.1|SQF47231.1|2329043_2329550_-|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIDGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>LS483350.1|SQF47232.1|2329580_2330585_-|Molybdopterin-biosynthesis-MoeB-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKYRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>LS483350.1|SQF47233.1|2330754_2331360_-|Molybdenum-transport-ATP-binding-protein-modC
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>LS483350.1|SQF47234.1|2331360_2332032_-|Molybdenum-transport-system-permease-protein-modB
MPDLTPFWISIRVAVISTIIVTVLGIFISKWLYRRKGSWVKLLESLLILPIVLPPTVLGFILLIIFSPRGPIGQFFANVLHLPVVFTLTGAVIASVIVSFPLMYQHTVQGFRGIDTKMINTARTMGASETKIFLKLILPLAKRSILAGIMMSFARALGEFGATLMVAGYIPNKTNTLPLEIYFLVEQGRENEAWLWVLVLVAFSIVVISTINLLNKDKYKEVD

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Crispr_ID: LS483350_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483350_11

2820884-2820967

Orphan

Consensus_repeat	Method
TTTCGAAATTCTCTGTGTTGGGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483350_11

>merge|LS483350|11|2820884-2820967|CRISPRCasFinder
TTTCGAAATTCTCTGTGTTGGGACCCACACCCTAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCC

>LS483350|11|10|2820884-2820967|CRISPRCasFinder
TTTCGAAATTCTCTGTGTTGGGACCC	ACACCCTAACTCGCATTGCCTGTAGAATTTCT
TTTCGAAATTCTCTGTGTTGGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
LS483350.1\|SQF47721.1\|2820279_2820633_-\|Permease	unknown	unknown	gnl\|CDD\|288237
LS483350.1\|SQF47718.1\|2817380_2818184_-\|subtilase-family-protease	unknown	unknown	gnl\|CDD\|173803
LS483350.1\|SQF47719.1\|2818994_2819564_-\|helix-turn-helix-family-protein	unknown	unknown	gnl\|CDD\|238045
LS483350.1\|SQF47727.1\|2826726_2826864_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
LS483350.1\|SQF47720.1\|2819816_2820212_-\|membrane-protein	unknown	unknown	gnl\|CDD\|288237
LS483350.1\|SQF47723.1\|2822067_2822787_-\|Ribosomal-RNA-small-subunit-methyltransferase-G	unknown	unknown	gnl\|CDD\|234637
LS483350.1\|SQF47716.1\|2816113_2816611_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF47715.1\|2815644_2816046_+\|transposase-(pseudogene)	unknown	unknown	gnl\|CDD\|225382
LS483350.1\|SQF47714.1\|2814835_2815027_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483350.1\|SQF47722.1\|2821185_2822025_-\|Chromosome-(plasmid)-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|275105
LS483350.1\|SQF47725.1\|2824730_2826110_-\|tRNA-(5-carboxymethylaminomethyl-2-thiouridylate)-synthase	unknown	unknown	gnl\|CDD\|235392
LS483350.1\|SQF47713.1\|2812863_2814744_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
LS483350.1\|SQF47724.1\|2822786_2824664_-\|tRNA-uridine-5-carboxymethylaminomethyl-modification-enzyme-GidA	unknown	unknown	gnl\|CDD\|235362
LS483350.1\|SQF47726.1\|2826253_2826601_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234782
LS483350.1\|SQF47712.1\|2812115_2812874_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
LS483350.1\|SQF47717.1\|2816612_2817362_-\|exported-protein	unknown	unknown	gnl\|CDD\|373922

Protein	Function_ID	Function_description	E-value
LS483350.1\|SQF47721.1\|2820279_2820633_-\|Permease	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.35852e-38
LS483350.1\|SQF47718.1\|2817380_2818184_-\|subtilase-family-protease	gnl\|CDD\|173803	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	2.02571e-48
LS483350.1\|SQF47719.1\|2818994_2819564_-\|helix-turn-helix-family-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.78153e-16
LS483350.1\|SQF47727.1\|2826726_2826864_-\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	8.39798e-10
LS483350.1\|SQF47720.1\|2819816_2820212_-\|membrane-protein	gnl\|CDD\|288237	pfam11345, DUF3147, Protein of unknown function (DUF3147). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	5.93989e-39
LS483350.1\|SQF47723.1\|2822067_2822787_-\|Ribosomal-RNA-small-subunit-methyltransferase-G	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	3.53317e-96
LS483350.1\|SQF47725.1\|2824730_2826110_-\|tRNA-(5-carboxymethylaminomethyl-2-thiouridylate)-synthase	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
LS483350.1\|SQF47715.1\|2815644_2816046_+\|transposase-(pseudogene)	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	3.26845e-33
LS483350.1\|SQF47722.1\|2821185_2822025_-\|Chromosome-(plasmid)-partitioning-protein-ParB	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	4.59236e-111
LS483350.1\|SQF47726.1\|2826253_2826601_-\|ribonuclease-P-protein-component	gnl\|CDD\|234782	PRK00499, rnpA, ribonuclease P; Reviewed.	6.56083e-51
LS483350.1\|SQF47713.1\|2812863_2814744_+\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	3.91285e-06
LS483350.1\|SQF47724.1\|2822786_2824664_-\|tRNA-uridine-5-carboxymethylaminomethyl-modification-enzyme-GidA	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
LS483350.1\|SQF47712.1\|2812115_2812874_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	6.08455e-110
LS483350.1\|SQF47717.1\|2816612_2817362_-\|exported-protein	gnl\|CDD\|373922	pfam15526, Ntox21, Novel toxin 21. Bacterial genomes and plasmids encode a variety of peptide and protein toxins that mediate inter-bacterial competition. Bacteriocins are diffusible proteins that parasitize cell-envelope proteins to enter and kill bacteria. Contact-dependent growth inhibition (CDI) is one mechanism of inter-bacterial competition. Novel Toxin 21 (alternatively 16S rRNA endonuclease CdiA) belongs to a family of prokaryotic polymorphic toxin systems implicated in intra-specific conflicts. This RNase toxin found in bacterial polymorphic toxin systems, is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, with two conserved lysine residues and [DS]xDxxxH, RxG[ST] and RxxD motifs. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 4, type 5 or type 7 secretion systems. This is also referred to as the E. cloacae CdiAC. The CdiAC proteins carry a variety of sequence-diverse C-terminal domains, which represent a collection of distinct toxins. Many CdiA-CT toxins have nuclease activities. In accord with the structural homology, CdiA-CT cleaves 16S rRNA at the same site as colicin E3 and this nuclease activity is responsible for growth inhibition.	3.28374e-23

>LS483350.1|SQF47721.1|2820279_2820633_-|Permease
MFSIGSAILHFVIGGIAVALASIIADKVGGKLGGIIATMPAVFLAAIIALALDHRGTQLVEMSMNLSTGAIVGILSCILTVFLTSLYIKHKGYRKGAIFTVVCWFVISLAIFSIRHL
>LS483350.1|SQF47720.1|2819816_2820212_-|membrane-protein
MKLTLMKFFVGGFAVLLSYIVSVTLPWKEFGGIFATFPAVFLVSMFITGMQYGDKVAVHVSRGAVFGMTGVLVCILVTWMMLHMTHMWLISIIVGFLSWFISAVCIFEAVEFIAQKRLEKHSWKAGKSNSK
>LS483350.1|SQF47719.1|2818994_2819564_-|helix-turn-helix-family-protein
MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCDLFNVTLDDLVKGTIPFAPDIKAQRSLNLWTYVMLIFMTLAAILTGPLVVYWNWAWGITVIVIYGIGYYASMKIEDFKKVHKMDNYDRIVAFMNGKDPSEVQTTKARNIKTGVLSFIAFVGAIILIALISMHLANKFL
>LS483350.1|SQF47718.1|2817380_2818184_-|subtilase-family-protease
MSRNLIHLSIGVAIFIISFSFYLLNQPNNWAWSSLNICINDSKPSNVKVAILDTGINNTRINNNFVTKRYNAINNHNQITTDSNHATQVASIITYGEHKEKLIGISKSVSIYDVKVLDDNLKGDIDNIIKGITWSIKNDVNIIHMSFGFQRYNKELHDAIKNAKNKGIILVAAAGNNMDDYSDYPARFNEVYSITAIDKNNKPFIYAPTKKIDFKAPGVDVYTKGSKDELLTVNGTSFAAAYFTAYLTNNLEFRNDLPHILKEYPIK
>LS483350.1|SQF47717.1|2816612_2817362_-|exported-protein
MKNKIIILFLAIIITFTYGNFAEASVVIKEANINNSNSKINTNKINENIYSKNNRNYIDNNFKSKDLNIESSLEHDLNTDKITVDASLKDNYNNKLDKTYDVKFLRIVNENDFKAEFTDQDTGEKIIYDTNEVKASIAPVVAVLVGFIAKQGLKKAIQKYGKTVVTSMIRTSPQVAAQAAKKLGYSATKHVSHGKKVFKKNSKGRPQYISVDKDGHRGGAWKGASSIKNLGSKKTRSGTYDANLKRIGD
>LS483350.1|SQF47716.1|2816113_2816611_-|Uncharacterised-protein
MIINLETQQIHFDLEHEIPYFQSPEKNRIRLDIDVLNKKQISNIINVIFNNQSKTKCTFLSEYLYPVKFREKTRIGRFFNITNWYEEIHSADEKYVIATIKNIKNKDLIDYSLYIKKGLVEPFIVFYNQENIFYISNAVIDIISVSKDTLGYIKSEFNDHCASPY
>LS483350.1|SQF47715.1|2815644_2816046_+|transposase-(pseudogene)
MIITLRSLGRKATDIENALNSMFSALPSHIFKSITFDCGKEFSNWKTICNCHDISIFFADPSMPAQRGLNEHSNGILRRSGLDKELDFNLVTDDHIISVAQKINHRPRKSLGYRTPLEVFMSFIKDDKLSSLI
>LS483350.1|SQF47714.1|2814835_2815027_+|Uncharacterised-protein
MKFRELVKQSYEDLKNLTVTWYNVIALAIIVIVLSTVTTPIIGIPAGLLGGAYYLKRREEKGK
>LS483350.1|SQF47713.1|2812863_2814744_+|ABC-transporter-permease
MTFNHIVLKNLRQNLKHYAMYLFSLFFSIVLYFSFTTLQFTKGVNNDDSMAIIKKGALVGSIFLFIIIVIFLMYANHLFVKRRTREFALFQLIGLTRQNILKMLALEQMIVFIITGVVGVLCGIAGAQLLLSIVSKLMSLSINLSIHFEPMALVLTILMLIIAYILILFQSSLFLKRRSILSMMKDSVKTDVTTAKVTVIEVISGVLGIAMIALGYYMATEMFGTFKALTMAMTSPFIILFLTVVGAYLFFRSSVSLIFKTLKKSKNGRVSITDVVFTSSIMYRMKKNAMSLTIIAIISAVTVTVLCFAALSKSNTDQTLTSMAPNDFNVVASQDAQQFESKLSQQHITFSKNYYETITVDNVKDQVITLENGSDSGRTNSILSANTKLTGNNAIITNTKSLPNVINIHLNNDLVVKGTKNETFRVTQEDKDKVYPLNLSFNSPVIEVSPEKYQQLKTQNNVHTFYGYDIKQTSQKKKAQAIAKQFGDKIITYDDMKKEVDATNGILIFVTSFLGLAFLVAAGCIIYIKQMDETEDELSNFRILKRIGFTHTDMLKGLLLKITFNFGLPLLIAILHAVFAAIAFMKLMGNISFMPVIIVIIVYTLIYIVFALIAFVHSNKLIKKTI
>LS483350.1|SQF47712.1|2812115_2812874_+|ABC-transporter-ATP-binding-protein
MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISSGSVIANGQELNKLNQKALAKFHKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATMEENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSANDLLQRLEEMNKSFDTTIVMVTHDPVAASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVHLQSVLGGVSNDI
>LS483350.1|SQF47722.1|2821185_2822025_-|Chromosome-(plasmid)-partitioning-protein-ParB
MKKPFSKLFGLKNKDDIIGHIEENRNSNVESIQIERIVPNRYQPRQVFEPNKIKELAESIHEHGLLQPIVVRPIEEDMFEIIAGERRFRAIQSLNLPQADVIIRDMDDEETAVVALIENIQRENLSVVEEAEAYKKLLEIGDTTQSELAKSLGKSQSFIANKLRLLKLAPKVLLRLREGKITERHARAVLSLSDSEQEALIEQVIAQKLNVKQTEDRVRQKTGPEKVKAQNLRFEQDVTQARDEVGKSIQAIQQIGLHVEHKDKDHEDYYEIKIRIYKR
>LS483350.1|SQF47723.1|2822067_2822787_-|Ribosomal-RNA-small-subunit-methyltransferase-G
MTVEWLAEQLKEHNIELTETQKQQFQTYYRLLVEWNEKMNLTSITDEHDVYLKHFYDSIAPSFYFDFNQPISICDVGAGAGFPSIPLKIMFPQLKVTIVDSLNKRIQFLNYLASELQLQDVSFIHDRAETFGKGVYRESYDVVTARAVARLSVLSELCLPLVKKGGQFVALKSSKGEEELEEAKFAISVLGGNVTETHTFELPEDAGERQMFIIDKKRQTPKKYPRKPGTPNKTPLLEK
>LS483350.1|SQF47724.1|2822786_2824664_-|tRNA-uridine-5-carboxymethylaminomethyl-modification-enzyme-GidA
MVQEYDVIVIGAGHAGVEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEENLHIMQGMVDELIIEDNEVKGVRTNIGTEYLSKAVIITTGTFLRGEIILGNMKYSSGPNHQLPSITLSDNLRELGFDIVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCWLTYTNAETHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAGKVLNTGEKILSRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGMISEERYARFNEKRQQIDAEIKRLSDIRIKPNEHTQAIIEQHGGSRLKDGILAIDLLRRPEMTYDIILEILEEEHQLNADVEEQVEIQTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKIDSLATEAREKLSEVKPLNIAQASRISGVNPADISILLIYLEQGKLQRVSD
>LS483350.1|SQF47725.1|2824730_2826110_-|tRNA-(5-carboxymethylaminomethyl-2-thiouridylate)-synthase
MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPESKEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAFLNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQTSMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVPMDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
>LS483350.1|SQF47726.1|2826253_2826601_-|ribonuclease-P-protein-component
MEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKKIK
>LS483350.1|SQF47727.1|2826726_2826864_-|50S-ribosomal-protein-L34
MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483350_5	5.1\|852778\|34\|LS483350\|CRISPRCasFinder	852778-852811	34	LS483350.1	1345867-1345900	0	1.0
LS483350_5	5.1\|852778\|34\|LS483350\|CRISPRCasFinder	852778-852811	34	LS483350.1	1435053-1435086	0	1.0
LS483350_10	10.2\|2324141\|36\|LS483350\|CRT	2324141-2324176	36	LS483350.1	1136303-1136338	0	1.0
LS483350_7	7.1\|1136402\|26\|LS483350\|CRISPRCasFinder	1136402-1136427	26	LS483350.1	249842-249867	1	0.962
LS483350_7	7.1\|1136402\|26\|LS483350\|CRISPRCasFinder	1136402-1136427	26	LS483350.1	764818-764843	1	0.962
LS483350_8	8.1\|1959554\|33\|LS483350\|CRISPRCasFinder	1959554-1959586	33	LS483350.1	801861-801893	1	0.97
LS483350_8	8.1\|1959554\|33\|LS483350\|CRISPRCasFinder	1959554-1959586	33	LS483350.1	1136359-1136391	1	0.97
LS483350_8	8.1\|1959554\|33\|LS483350\|CRISPRCasFinder	1959554-1959586	33	LS483350.1	1345822-1345854	1	0.97
LS483350_8	8.1\|1959554\|33\|LS483350\|CRISPRCasFinder	1959554-1959586	33	LS483350.1	1616883-1616915	1	0.97
LS483350_8	8.1\|1959554\|33\|LS483350\|CRISPRCasFinder	1959554-1959586	33	LS483350.1	2598161-2598193	1	0.97
LS483350_10	10.2\|2324141\|36\|LS483350\|CRT	2324141-2324176	36	LS483350.1	1804144-1804179	1	0.972
LS483350_11	11.1\|2820910\|32\|LS483350\|CRISPRCasFinder	2820910-2820941	32	LS483350.1	801961-801992	1	0.969
LS483350_11	11.1\|2820910\|32\|LS483350\|CRISPRCasFinder	2820910-2820941	32	LS483350.1	802019-802050	1	0.969
LS483350_11	11.1\|2820910\|32\|LS483350\|CRISPRCasFinder	2820910-2820941	32	LS483350.1	1061819-1061850	1	0.969
LS483350_11	11.1\|2820910\|32\|LS483350\|CRISPRCasFinder	2820910-2820941	32	LS483350.1	1435143-1435174	1	0.969
LS483350_4	4.1\|801825\|26\|LS483350\|CRISPRCasFinder	801825-801850	26	LS483350.1	249842-249867	2	0.923
LS483350_4	4.1\|801825\|26\|LS483350\|CRISPRCasFinder	801825-801850	26	LS483350.1	764818-764843	2	0.923
LS483350_4	4.1\|801825\|26\|LS483350\|CRISPRCasFinder	801825-801850	26	LS483350.1	916887-916912	2	0.923
LS483350_7	7.1\|1136402\|26\|LS483350\|CRISPRCasFinder	1136402-1136427	26	LS483350.1	764874-764899	2	0.923
LS483350_8	8.1\|1959554\|33\|LS483350\|CRISPRCasFinder	1959554-1959586	33	LS483350.1	1435099-1435131	2	0.939
LS483350_10	10.1\|2324085\|33\|LS483350\|CRT	2324085-2324117	33	LS483350.1	801861-801893	2	0.939
LS483350_10	10.1\|2324085\|33\|LS483350\|CRT	2324085-2324117	33	LS483350.1	1136359-1136391	2	0.939
LS483350_10	10.1\|2324085\|33\|LS483350\|CRT	2324085-2324117	33	LS483350.1	1345822-1345854	2	0.939
LS483350_10	10.1\|2324085\|33\|LS483350\|CRT	2324085-2324117	33	LS483350.1	1435099-1435131	2	0.939
LS483350_10	10.1\|2324085\|33\|LS483350\|CRT	2324085-2324117	33	LS483350.1	2598161-2598193	2	0.939
LS483350_10	10.2\|2324141\|36\|LS483350\|CRT	2324141-2324176	36	LS483350.1	249967-250002	2	0.944
LS483350_10	10.2\|2324141\|36\|LS483350\|CRT	2324141-2324176	36	LS483350.1	1616822-1616857	2	0.944
LS483350_10	10.2\|2324141\|36\|LS483350\|CRT	2324141-2324176	36	LS483350.1	1970298-1970333	2	0.944
LS483350_10	10.3\|2324200\|33\|LS483350\|CRT	2324200-2324232	33	LS483350.1	801861-801893	2	0.939
LS483350_10	10.3\|2324200\|33\|LS483350\|CRT	2324200-2324232	33	LS483350.1	1136359-1136391	2	0.939
LS483350_10	10.3\|2324200\|33\|LS483350\|CRT	2324200-2324232	33	LS483350.1	1345822-1345854	2	0.939
LS483350_10	10.3\|2324200\|33\|LS483350\|CRT	2324200-2324232	33	LS483350.1	2598161-2598193	2	0.939

1. spacer 5.1|852778|34|LS483350|CRISPRCasFinder matches to position: 1345867-1345900, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 5.1|852778|34|LS483350|CRISPRCasFinder matches to position: 1435053-1435086, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 10.2|2324141|36|LS483350|CRT matches to position: 1136303-1136338, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 7.1|1136402|26|LS483350|CRISPRCasFinder matches to position: 249842-249867, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cgggcccccaacatagaagctggcgg	Protospacer
**** *********************

5. spacer 7.1|1136402|26|LS483350|CRISPRCasFinder matches to position: 764818-764843, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
******************** *****

6. spacer 8.1|1959554|33|LS483350|CRISPRCasFinder matches to position: 801861-801893, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

7. spacer 8.1|1959554|33|LS483350|CRISPRCasFinder matches to position: 1136359-1136391, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

8. spacer 8.1|1959554|33|LS483350|CRISPRCasFinder matches to position: 1345822-1345854, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

9. spacer 8.1|1959554|33|LS483350|CRISPRCasFinder matches to position: 1616883-1616915, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

10. spacer 8.1|1959554|33|LS483350|CRISPRCasFinder matches to position: 2598161-2598193, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

11. spacer 10.2|2324141|36|LS483350|CRT matches to position: 1804144-1804179, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

12. spacer 11.1|2820910|32|LS483350|CRISPRCasFinder matches to position: 801961-801992, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

13. spacer 11.1|2820910|32|LS483350|CRISPRCasFinder matches to position: 802019-802050, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

14. spacer 11.1|2820910|32|LS483350|CRISPRCasFinder matches to position: 1061819-1061850, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

15. spacer 11.1|2820910|32|LS483350|CRISPRCasFinder matches to position: 1435143-1435174, mismatch: 1, identity: 0.969

acaccctaactcgcattgcctgtagaatttct	CRISPR spacer
acaccccaactcgcattgcctgtagaatttct	Protospacer
******.*************************

16. spacer 4.1|801825|26|LS483350|CRISPRCasFinder matches to position: 249842-249867, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttgggggcccg	Protospacer
************.******** ****

17. spacer 4.1|801825|26|LS483350|CRISPRCasFinder matches to position: 764818-764843, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

18. spacer 4.1|801825|26|LS483350|CRISPRCasFinder matches to position: 916887-916912, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

19. spacer 7.1|1136402|26|LS483350|CRISPRCasFinder matches to position: 764874-764899, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacataaaagcaggcgg	Protospacer
***************.**** *****

20. spacer 8.1|1959554|33|LS483350|CRISPRCasFinder matches to position: 1435099-1435131, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

21. spacer 10.1|2324085|33|LS483350|CRT matches to position: 801861-801893, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

22. spacer 10.1|2324085|33|LS483350|CRT matches to position: 1136359-1136391, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

23. spacer 10.1|2324085|33|LS483350|CRT matches to position: 1345822-1345854, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

24. spacer 10.1|2324085|33|LS483350|CRT matches to position: 1435099-1435131, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

25. spacer 10.1|2324085|33|LS483350|CRT matches to position: 2598161-2598193, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

26. spacer 10.2|2324141|36|LS483350|CRT matches to position: 249967-250002, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

27. spacer 10.2|2324141|36|LS483350|CRT matches to position: 1616822-1616857, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

28. spacer 10.2|2324141|36|LS483350|CRT matches to position: 1970298-1970333, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

29. spacer 10.3|2324200|33|LS483350|CRT matches to position: 801861-801893, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

30. spacer 10.3|2324200|33|LS483350|CRT matches to position: 1136359-1136391, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

31. spacer 10.3|2324200|33|LS483350|CRT matches to position: 1345822-1345854, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

32. spacer 10.3|2324200|33|LS483350|CRT matches to position: 2598161-2598193, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483350_4	4.1\|801825\|26\|LS483350\|CRISPRCasFinder	801825-801850	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
LS483350_4	4.1\|801825\|26\|LS483350\|CRISPRCasFinder	801825-801850	26	NZ_CP034332	Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence	3359-3384	5	0.808
LS483350_4	4.1\|801825\|26\|LS483350\|CRISPRCasFinder	801825-801850	26	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	715511-715536	5	0.808
LS483350_8	8.1\|1959554\|33\|LS483350\|CRISPRCasFinder	1959554-1959586	33	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159745-159777	10	0.697

1. spacer 4.1|801825|26|LS483350|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

2. spacer 4.1|801825|26|LS483350|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.

3. spacer 4.1|801825|26|LS483350|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

4. spacer 8.1|1959554|33|LS483350|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

354294 : 405167

Streptococcus_phage(62.5%)

transposase,integrase

attL 357626:357642|attR 400246:400262

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF43729.1\|354294_354585_-\|integrase	integrase-like protein	Q4ZE80	Staphylococcus_phage	5.2e-24	70.5
SQF43731.1\|355201_355813_+	staphylococcal enterotoxin, putative	NA	NA	NA	NA
SQF43735.1\|356181_356550_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQF43737.1\|356730_357303_+	lipoprotein	NA	NA	NA	NA
SQF43739.1\|357440_357704_-	XRE family transcription regulator, putative	NA	NA	NA	NA
357626:357642	attL	NA	NA	NA	NA
SQF43741.1\|358003_358255_+	transglycosylase associated family protein	NA	NA	NA	NA
SQF43744.1\|358680_359262_+	truncated phosphoglycerate mutase family protein	NA	NA	NA	NA
SQF43745.1\|359327_359714_-	membrane spanning protein	NA	NA	NA	NA
SQF43747.1\|359965_360592_-	lipoprotein	NA	NA	NA	NA
SQF43750.1\|360664_360922_-	Uncharacterised protein	NA	NA	NA	NA
SQF43752.1\|361036_362560_-	Alkyl hydroperoxide reductase protein F	A0A249XZT7	Enterococcus_phage	1.9e-40	33.6
SQF43753.1\|362575_363145_-	Alkyl hydroperoxide reductase protein C	NA	NA	NA	NA
SQF43755.1\|363585_364392_+	Chromate reductase	NA	NA	NA	NA
SQF43757.1\|364472_365861_-	Sodium:dicarboxylate symporter family protein	NA	NA	NA	NA
SQF43759.1\|366837_367794_-	DNA-binding protein	NA	NA	NA	NA
SQF43761.1\|367911_368574_-	Uncharacterised protein	NA	NA	NA	NA
SQF43763.1\|368716_369124_-	transcriptional regulator	NA	NA	NA	NA
SQF43765.1\|369636_370215_+	Xanthine phosphoribosyltransferase	NA	NA	NA	NA
SQF43766.1\|370214_371483_+	Xanthine permease	NA	NA	NA	NA
SQF43770.1\|371520_372987_+	Inosine-5-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5
SQF43772.1\|373011_374553_+	GMP synthase (glutamine-hydrolyzing)	A0A1V0SH76	Hokovirus	1.2e-23	32.6
SQF43775.1\|374620_375814_-\|integrase	integrase-like protein	A0A0S2MV79	Bacillus_phage	8.3e-44	34.2
SQF43777.1\|375840_376041_-	Domain of uncharacterised function (DUF3173)	NA	NA	NA	NA
SQF43778.1\|376538_376769_-	Polyribonucleotide nucleotidyltransferase	A0A1S5SEX1	Streptococcus_phage	1.0e-27	78.9
SQF43780.1\|376765_377188_-	Sigma-70 Region 4 protein	A0A1S5SEW0	Streptococcus_phage	7.5e-48	68.6
SQF43782.1\|377718_378072_+	putative HTH-type transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	2.2e-53	89.7
SQF43784.1\|378415_380335_-	tetracycline resistance protein TetM	A0A1S5SF82	Streptococcus_phage	0.0e+00	97.2
SQF43786.1\|380711_381641_-	conjugative transposon-like protein	A0A1S5SF22	Streptococcus_phage	1.1e-83	56.6
SQF43788.1\|381657_382680_-	NLP/P60 family lipoprotein	A0A1S5SEZ8	Streptococcus_phage	2.4e-132	75.5
SQF43789.1\|382676_384704_-	Conjugative transposon membrane protein	A0A1S5SF30	Streptococcus_phage	2.3e-195	65.5
SQF43792.1\|384700_387154_-	ATP/GTP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	78.8
SQF43794.1\|387137_387533_-	conjugative transposon-like protein	A0A1S5SEX7	Streptococcus_phage	5.9e-47	72.6
SQF43796.1\|387604_388234_-	Uncharacterised protein	NA	NA	NA	NA
SQF43798.1\|388262_388991_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	7.8e-37	39.0
SQF43800.1\|388990_390418_-\|transposase	putative transposase	NA	NA	NA	NA
SQF43802.1\|390501_390630_-	Uncharacterised protein	NA	NA	NA	NA
SQF43804.1\|390685_391186_-	putative antirestriction protein	A0A1S5SF25	Streptococcus_phage	1.7e-54	63.0
SQF43806.1\|391246_392008_-	Protein of uncharacterised function (DUF3644)	NA	NA	NA	NA
SQF43808.1\|392067_392289_-	Conjugative transposon protein	A0A1S5SEY0	Streptococcus_phage	3.1e-29	93.2
SQF43809.1\|392285_392576_-	Uncharacterised protein	NA	NA	NA	NA
SQF43811.1\|392572_393757_-	replication initiation factor	A0A1S5SEX3	Streptococcus_phage	8.3e-161	68.1
SQF43813.1\|393938_395342_-	Ftsk domain-containing protein	A0A1S5SFB5	Streptococcus_phage	1.4e-175	66.5
SQF43815.1\|395363_396137_-	putative mom-like protein	NA	NA	NA	NA
SQF43817.1\|396146_396524_-	Conjugative transposon protein	A0A1S5SF96	Streptococcus_phage	9.6e-47	76.4
SQF43819.1\|396544_396859_-	putative conjugative transposon protein	A0A1S5SF38	Streptococcus_phage	1.2e-42	77.7
SQF43821.1\|397058_398852_-	putative UvrD/REP helicase	E3T5J8	Cafeteria_roenbergensis_virus	6.9e-26	23.8
SQF43823.1\|398848_401038_-	recombinational DNA repair ATPase, RecF_1	NA	NA	NA	NA
400246:400262	attR	NA	NA	NA	NA
SQF43824.1\|401171_402023_-\|transposase	transposase for insertion sequence element	NA	NA	NA	NA
SQF43828.1\|401997_402369_-\|transposase	transposase for insertion sequence element	NA	NA	NA	NA
SQF43830.1\|402862_403399_-	Uncharacterised protein	NA	NA	NA	NA
SQF43831.1\|403791_404496_-	Phage protein	U5U4R0	Staphylococcus_phage	2.6e-29	37.6
SQF43833.1\|404894_405167_-\|transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	1.3e-13	50.6

DBSCAN-SWA_2

733354 : 741174

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF44385.1\|733354_734410_-	Sensor histidine protein kinase SaeS (exoprotein expression protein S)	A0A1V0SGX0	Hokovirus	2.1e-14	30.0
SQF44387.1\|734409_735096_-	Response regulator SaeR	NA	NA	NA	NA
SQF44389.1\|735070_735544_-	DoxX family protein	NA	NA	NA	NA
SQF44391.1\|735885_736326_-	lipoprotein	NA	NA	NA	NA
SQF44393.1\|736605_737190_-	Uncharacterised protein	NA	NA	NA	NA
SQF44394.1\|737288_738002_-	Queuosine Biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
SQF44396.1\|738005_738425_-	6-pyruvoyl-tetrahydropterin synthase	S4U060	uncultured_phage	6.3e-07	28.7
SQF44399.1\|738426_739095_-	Queuosine Biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
SQF44401.1\|739445_740039_+	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
SQF44403.1\|740022_741174_+	Para-aminobenzoate synthetase component I	A0A0B5J984	Pandoravirus	1.6e-23	35.7

DBSCAN-SWA_3

753146 : 767976

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF44421.1\|753146_754205_+	histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
SQF44425.1\|754555_755098_+	5'-3'-deoxyribonucleotidase, putative	NA	NA	NA	NA
SQF44427.1\|755777_756695_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
SQF44430.1\|756964_758470_-	Di/tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
SQF44432.1\|758810_759311_-	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
SQF44434.1\|759330_760197_-	Integral membrane domain protein	NA	NA	NA	NA
SQF44436.1\|760997_761396_+	Nrdi	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
SQF44438.1\|761358_763464_+	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
SQF44443.1\|763581_764553_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
SQF44444.1\|765261_766275_+	FatD	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
SQF44445.1\|766261_767218_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
SQF44446.1\|767214_767976_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_4

824541 : 869124

Staphylococcus_phage(71.43%)

transposase,terminase,integrase

attL 856851:856869|attR 871413:871431

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF44497.1\|824541_825714_-\|transposase	IS256-like transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
SQF44498.1\|826292_826814_+	membrane protein	NA	NA	NA	NA
SQF44499.1\|826952_827483_+	acetyltransferase	NA	NA	NA	NA
SQF44500.1\|827745_830565_+	Clumping factor ClfA, fibrinogen-binding protein	NA	NA	NA	NA
SQF44501.1\|830785_832312_+	putative von Willebrand factor-binding protein precursor	NA	NA	NA	NA
SQF44502.1\|832662_833685_+	Extracellular ECM and plasma binding protein Emp	NA	NA	NA	NA
SQF44504.1\|834019_834490_+	von Willebrand binding protein	NA	NA	NA	NA
SQF44506.1\|834830_835517_+	Thermonuclease	A0A1P8CWK6	Bacillus_phage	3.8e-33	54.2
SQF44508.1\|836355_837528_+\|transposase	IS256-like transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
SQF44510.1\|837691_837880_-	membrane protein	NA	NA	NA	NA
SQF44512.1\|837908_838169_-	membrane protein	NA	NA	NA	NA
SQF44514.1\|838509_838713_+	YozE domain-like protein	NA	NA	NA	NA
SQF44516.1\|838709_838946_-	Uncharacterised protein	NA	NA	NA	NA
SQF44517.1\|839167_839752_+	phosphoglycerate mutase	A0A1X9IGJ2	Lactococcus_phage	9.4e-33	40.4
SQF44519.1\|839824_840442_-	LysE type translocator protein	NA	NA	NA	NA
SQF44521.1\|840596_841091_-	lactococcal prophage ps3 protein 05	NA	NA	NA	NA
SQF44523.1\|841489_841912_-	Organic hydroperoxide resistance protein	NA	NA	NA	NA
SQF44524.1\|842059_842776_+	3-dehydroquinate dehydratase I AroC I	W6LP76	Streptococcus_phage	3.0e-17	30.6
SQF44526.1\|842858_843398_+	nitroreductase family protein	NA	NA	NA	NA
SQF44528.1\|843547_843868_-	Thioredoxin	A0A1X9I9P5	Staphylococcus_phage	3.1e-06	36.4
SQF44530.1\|844011_844368_+	Arsenate reductase	M1PLC0	Streptococcus_phage	4.7e-19	46.6
SQF44532.1\|844525_844906_+	Glycine cleavage system H protein	NA	NA	NA	NA
SQF44534.1\|844969_845083_+	Uncharacterised protein	NA	NA	NA	NA
SQF44535.1\|845084_845705_+	Putative uncharacterized protein truncated-SA	NA	NA	NA	NA
SQF44537.1\|845806_846892_+	Transposase A from transposon Tn554	A0A0A8WIF9	Clostridium_phage	4.5e-12	28.3
SQF44539.1\|846888_848781_+	Transposase B from transposon Tn554	NA	NA	NA	NA
SQF44541.1\|848787_849165_+	Transposase for transposon Tn554	NA	NA	NA	NA
SQF44543.1\|849315_850098_+	Spectinomycin 9-O-adenylyltransferase	NA	NA	NA	NA
SQF44545.1\|850223_850955_-	rRNA adenine N-6-methyltransferase	E4ZFQ0	Streptococcus_phage	4.2e-54	48.8
SQF44547.1\|851463_852126_+	methyltransferase type 12	NA	NA	NA	NA
SQF44549.1\|852362_852650_+	Putative cytosolic protein	NA	NA	NA	NA
SQF44551.1\|853388_853778_+	DNA primase/ small primase-like protein	NA	NA	NA	NA
SQF44552.1\|853770_854067_+	Thioredoxin	NA	NA	NA	NA
SQF44554.1\|854316_855342_+	Methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-27	36.8
SQF44556.1\|855334_856030_+	Methionine ABC transporter permease protein	NA	NA	NA	NA
SQF44557.1\|856047_856869_+	Methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
856851:856869	attL	NA	NA	NA	NA
SQF44559.1\|857012_858233_-\|integrase	prophage L54a integrase	Q4ZE80	Staphylococcus_phage	3.5e-98	47.3
SQF44561.1\|858320_859049_-	enterotoxin	A0EX09	Staphylococcus_phage	2.4e-22	32.3
SQF44563.1\|859072_859801_-	staphylococcal enterotoxin Q	A0EX09	Staphylococcus_phage	7.9e-29	35.4
SQF44565.1\|859975_860710_-	Helix-turn-helix XRE-family like protein	Q4ZE79	Staphylococcus_phage	8.5e-132	98.4
SQF44567.1\|860859_861072_+	pathogenicity island protein	Q4ZE78	Staphylococcus_phage	3.4e-33	98.6
SQF44568.1\|861072_861345_+	pathogenicity island DNA-binding protein	Q4ZE77	Staphylococcus_phage	3.4e-46	100.0
SQF44570.1\|861356_861503_+	hypothetical bovine pathogenicity island protein	NA	NA	NA	NA
SQF44572.1\|861495_861705_+	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	7.7e-30	95.7
SQF44574.1\|861707_862001_+	hypothetical mobile element-associated protein	A0A1W6JQH0	Staphylococcus_phage	1.8e-24	61.8
SQF44576.1\|862088_862958_+	pathogenicity island protein	A0A1W6JQL5	Staphylococcus_phage	3.8e-163	97.2
SQF44578.1\|862974_864432_+	pathogenicity island protein	A0A1W6JQD6	Staphylococcus_phage	1.4e-279	96.7
SQF44579.1\|864733_865096_+	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	2.9e-64	96.7
SQF44581.1\|865097_865382_+	pathogenicity island protein	A0A1W6JQE4	Staphylococcus_phage	1.6e-49	98.9
SQF44582.1\|865378_866020_+	mobile element-associated protein, putative	Q4ZE67	Staphylococcus_phage	2.7e-113	94.8
SQF44583.1\|866468_866810_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	1.6e-56	98.2
SQF44584.1\|866821_867400_+\|transposase	transposase	A0A2H4JBG0	uncultured_Caudovirales_phage	3.3e-30	40.0
SQF44585.1\|867417_867636_+	hypothetical mobile element-associated protein	NA	NA	NA	NA
SQF44586.1\|867686_868214_+	pathogenicity island protein	Q4ZE87	Staphylococcus_phage	1.6e-87	96.0
SQF44587.1\|868216_868558_+\|transposase	transposase	Q4ZE86	Staphylococcus_phage	8.4e-58	98.2
SQF44588.1\|868554_869124_+\|terminase	putative phage terminase	A0A1W6JQF0	Staphylococcus_phage	1.2e-101	98.4
871413:871431	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1037083 : 1045556

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF44930.1\|1037083_1037566_+	AIR carboxylase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
SQF44932.1\|1037552_1038677_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
SQF44933.1\|1038680_1039385_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
SQF44935.1\|1039384_1039648_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
SQF44936.1\|1039649_1040321_+	Phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
SQF44937.1\|1040313_1042503_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	1.0e-140	39.7
SQF44939.1\|1042481_1043966_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
SQF44941.1\|1043958_1044987_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
SQF44942.1\|1044989_1045556_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_6

1588444 : 1596756

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF45952.1\|1588444_1589230_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
SQF45954.1\|1589355_1590246_-	endonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
SQF45955.1\|1590255_1591602_-	ATP-dependent RNA helicase YqfR	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
SQF45957.1\|1591715_1592816_-	NIF3 protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
SQF45959.1\|1592818_1593496_-\|tRNA	Putative tRNA-m1A22 methylase	NA	NA	NA	NA
SQF45961.1\|1593626_1594733_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
SQF45963.1\|1594956_1596756_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-54	36.0

DBSCAN-SWA_7

1665894 : 1674937

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF46098.1\|1665894_1666413_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
SQF46099.1\|1666434_1668708_-	Single-stranded-DNA-specific exonuclease recJ	A7KV88	Bacillus_phage	8.9e-63	28.8
SQF46100.1\|1668910_1671190_-	Protein-export membrane protein secD / Protein-export membrane protein secF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
SQF46101.1\|1671464_1671725_-	Preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
SQF46102.1\|1671743_1672883_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
SQF46103.1\|1672905_1673931_-\|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
SQF46104.1\|1673932_1674937_-	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

1785136 : 1889365

Staphylococcus_phage(87.14%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF46239.1\|1785136_1786309_+\|transposase	IS256-like transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
SQF46241.1\|1786822_1788181_-	smooth muscle caldesmon	NA	NA	NA	NA
SQF46243.1\|1788254_1788746_-	General stress protein-like protein	NA	NA	NA	NA
SQF46245.1\|1788819_1790133_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
SQF46247.1\|1790156_1793981_-	SpoIIIE family cell division protein	A0A218M9A2	Mycobacterium_phage	2.6e-83	47.0
SQF46249.1\|1794001_1794598_-\|tRNA	tRNA-binding domain-containing protein	NA	NA	NA	NA
SQF46251.1\|1794626_1795484_-	Putative cytosolic protein	A0A2H4PQY3	Staphylococcus_phage	6.8e-72	100.0
SQF46253.1\|1795583_1795895_-	Thioredoxin	NA	NA	NA	NA
SQF46255.1\|1795959_1797036_-	Glutamyl aminopeptidase; Deblocking aminopeptidase	NA	NA	NA	NA
SQF46258.1\|1797119_1797434_+	peptidase propeptide and YPEB domain-containing protein	NA	NA	NA	NA
SQF46259.1\|1797558_1798401_-	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA
SQF46261.1\|1798925_1799411_+\|transposase	IS605/IS200-like transposase	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4
SQF46263.1\|1799612_1800257_-\|tRNA	tRNA (guanine46-N7-)-methyltransferase	NA	NA	NA	NA
SQF46265.1\|1800271_1801063_-	phosphotransferase enzyme family	NA	NA	NA	NA
SQF46267.1\|1801612_1802461_-	D-alanine aminotransferase	NA	NA	NA	NA
SQF46268.1\|1802464_1803874_-	Xaa-His dipeptidase	NA	NA	NA	NA
SQF46270.1\|1804564_1804987_-	putative staphylococcal protein	NA	NA	NA	NA
SQF46272.1\|1805003_1805699_-	16S pseudouridine synthase A	NA	NA	NA	NA
SQF46274.1\|1805695_1807357_-	spore cortex protein; Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids	NA	NA	NA	NA
SQF46276.1\|1807763_1809032_+	NAD(FAD)-utilizing dehydrogenase	A0A2H4PQX1	Staphylococcus_phage	4.1e-57	100.0
SQF46278.1\|1809148_1815709_-	LPXTG-motif cell wall anchor domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	2.2e-303	97.8
SQF46280.1\|1816034_1816346_-	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
SQF46282.1\|1816367_1818785_-\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.2
SQF46287.1\|1819080_1820253_-	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	3.1e-216	100.0
SQF46289.1\|1820362_1821316_+	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
SQF46291.1\|1821312_1821876_+	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
SQF46293.1\|1821995_1822397_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
SQF46295.1\|1822916_1823141_-	Mobile element protein	Q9MBP7	Staphylococcus_prophage	4.5e-20	81.8
SQF46296.1\|1823137_1823629_-	Transposase	A0A146ICT8	Staphylococcus_phage	2.4e-74	91.6
SQF46297.1\|1823975_1824803_-	Lysophospholipase; Monoglyceride lipase; putative	NA	NA	NA	NA
SQF46299.1\|1825035_1826037_+	Proline dehydrogenase (Proline oxidase)	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
SQF46302.1\|1826158_1826623_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
SQF46304.1\|1826635_1827817_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.6e-225	99.2
SQF46306.1\|1827827_1828460_-	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
SQF46309.1\|1828466_1829510_-	5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	6.3e-197	99.4
SQF46312.1\|1829990_1831493_-	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
SQF46313.1\|1832015_1832330_+	arsenical resistance operon repressor 2	A0A2H4PQT4	Staphylococcus_phage	2.0e-53	100.0
SQF46315.1\|1832329_1833622_+	arsenical pump membrane protein	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
SQF46317.1\|1833639_1834035_+	arsenate reductase, putative	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
SQF46319.1\|1834329_1835184_-	peptidoglycan endo-beta-N-acetylglucosaminidase	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
SQF46321.1\|1835459_1835684_-	putative staphylococcal protein	NA	NA	NA	NA
SQF46323.1\|1835882_1836353_+	RNA polymerase sigma factor sigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
SQF46325.1\|1836465_1836909_+	comK family protein	NA	NA	NA	NA
SQF46327.1\|1836895_1837339_-	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	3.0e-55	85.0
SQF46329.1\|1837634_1838270_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
SQF46331.1\|1838709_1839423_-	Transaldolase	M1PR54	Cyanophage	1.2e-18	35.3
SQF46333.1\|1839682_1839985_+	membrane protein	NA	NA	NA	NA
SQF46335.1\|1840240_1840606_+	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
SQF46337.1\|1840602_1840956_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
SQF46339.1\|1841510_1842335_+\|transposase	transposase	A0ZS58	Staphylococcus_virus	1.7e-125	98.2
SQF46340.1\|1842367_1842976_+\|transposase	putative transposase	A0ZS58	Staphylococcus_virus	1.3e-109	96.0
SQF46342.1\|1843038_1843872_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	9.6e-156	98.6
SQF46344.1\|1844083_1844992_-	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	3.2e-136	98.7
SQF46345.1\|1845116_1846310_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
SQF46347.1\|1846680_1848273_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
SQF46351.1\|1848408_1848894_-\|transposase	IS605/IS200-like transposase	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4
SQF46354.1\|1849268_1850039_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	7.3e-142	98.4
SQF46357.1\|1850019_1850499_-	phosphohydrolase	A0A2H4PQM4	Staphylococcus_phage	1.5e-84	98.7
SQF46359.1\|1850558_1850816_+	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
SQF46361.1\|1850812_1851814_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.8e-186	97.6
SQF46364.1\|1851818_1853297_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.0e-281	97.0
SQF46366.1\|1853455_1853938_-	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	2.5e-79	98.6
SQF46367.1\|1854249_1854864_+	endonuclease	A0A2H4PQM8	Staphylococcus_phage	9.5e-36	87.3
SQF46369.1\|1854944_1855940_+	Telomeric repeat-binding factor 2	A0A2H4PQN2	Staphylococcus_phage	7.1e-73	96.4
SQF46371.1\|1856015_1856642_+	lipoprotein	A0A2H4PQM7	Staphylococcus_phage	7.1e-79	82.7
SQF46373.1\|1856682_1857027_+	Uncharacterised protein	A0A2H4PQN6	Staphylococcus_phage	6.3e-53	92.0
SQF46375.1\|1857124_1857676_+	Uncharacterised protein	A0A2H4PQN4	Staphylococcus_phage	1.0e-20	94.1
SQF46378.1\|1857893_1858535_-	Domain of uncharacterised function (DUF955)	A0A2H4PQN8	Staphylococcus_phage	2.6e-76	93.2
SQF46380.1\|1858835_1859012_-	Uncharacterised protein	NA	NA	NA	NA
SQF46382.1\|1859022_1859406_-	Uncharacterised protein	NA	NA	NA	NA
SQF46384.1\|1860009_1860153_-\|transposase	transposase family protein, putative	A0A2H4PQU1	Staphylococcus_phage	6.4e-20	100.0
SQF46386.1\|1861022_1861400_-	exported protein	NA	NA	NA	NA
SQF46387.1\|1861920_1866033_-	[Genomic island nu Sa beta2]	A0A2H4PQT3	Staphylococcus_phage	0.0e+00	100.0
SQF46389.1\|1866882_1868082_-	type I restriction-modification enzyme, S subunit, EcoA family protein	A0A2H4PQP5	Staphylococcus_phage	5.5e-229	99.7
SQF46392.1\|1868074_1869631_-	Type I restriction enzyme EcoprrI M protein	A0A2H4PQP4	Staphylococcus_phage	2.3e-288	99.4
SQF46394.1\|1869993_1870713_-\|protease	Serine protease splD	A0A2H4PQP1	Staphylococcus_phage	1.1e-131	100.0
SQF46396.1\|1870863_1871580_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
SQF46398.1\|1871737_1872457_-\|protease	Serine protease splD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
SQF46400.1\|1872577_1873297_-\|protease	Serine protease splC	A0A2H4PQP7	Staphylococcus_phage	1.2e-130	99.2
SQF46402.1\|1873354_1874077_-\|protease	Serine protease splB	A0A2H4PQN0	Staphylococcus_phage	2.4e-131	99.6
SQF46404.1\|1874201_1874909_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	2.6e-130	100.0
SQF46406.1\|1875871_1876438_+	probable beta-lactamase	A0A2H4PQH6	Staphylococcus_phage	3.3e-99	100.0
SQF46408.1\|1876911_1877610_-	lantibiotic ABC transporter protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
SQF46410.1\|1877606_1878368_-	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	A0A2H4PQH2	Staphylococcus_phage	3.7e-130	99.6
SQF46412.1\|1878364_1879057_-	lantibiotic immunity protein F	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
SQF46414.1\|1879079_1880453_-\|protease	epidermin leader peptide processing serine protease EpiP	A0A2H4PQH1	Staphylococcus_phage	2.9e-258	100.0
SQF46416.1\|1880462_1880981_-	lantibiotic modifying enzyme	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
SQF46418.1\|1880996_1882241_-	lanthionine synthetase C-like family protein	A0A2H4PQH9	Staphylococcus_phage	5.1e-238	100.0
SQF46420.1\|1882233_1883976_-	Epidermin biosynthesis protein epiB	A0A2H4PQG8	Staphylococcus_phage	2.5e-259	54.1
SQF46422.1\|1884040_1884184_-	lantibiotic gallidermin	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
SQF46424.1\|1885304_1886288_-	Leukotoxin LukD	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
SQF46426.1\|1886289_1887225_-	Leukocidin S subunit lukE	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
SQF46428.1\|1888108_1888564_+	[Genomic island nu Sa beta2]	Q4ZCB9	Staphylococcus_virus	1.7e-61	76.8
SQF46430.1\|1888576_1889365_+	Domain of uncharacterised function DUF1828	A0A2H4PQI0	Staphylococcus_phage	5.3e-140	95.8

DBSCAN-SWA_9

1972394 : 2060690

103

Staphylococcus_phage(89.19%)

terminase,protease,head,tRNA,tail,holin,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF46576.1\|1972394_1973852_-\|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	NA	NA	NA	NA
SQF46578.1\|1973853_1974156_-\|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C; Glutamyl-tRNA(Gln) amidotransferase subunit C	NA	NA	NA	NA
SQF46580.1\|1974522_1976061_+	Sodium/proline symporter	NA	NA	NA	NA
SQF46582.1\|1976149_1977349_-	Lipoprotein (pheromone precursor)	NA	NA	NA	NA
SQF46583.1\|1977361_1979365_-	DNA ligase	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
SQF46585.1\|1979368_1981561_-	ATP-dependent DNA helicase UvrD/PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
SQF46587.1\|1981557_1982250_-	geranylgeranylglyceryl diphosphate synthase	NA	NA	NA	NA
SQF46589.1\|1982421_1982724_-	His repressor	NA	NA	NA	NA
SQF46591.1\|1982832_1984128_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
SQF46593.1\|1984988_1986155_+	Staphopain A precursor	NA	NA	NA	NA
SQF46595.1\|1986185_1986512_+\|protease	putative cysteine protease inhibitor (Staphostatin A)	NA	NA	NA	NA
SQF46597.1\|1986803_1986977_-	Uncharacterised protein	NA	NA	NA	NA
SQF46599.1\|1986957_1987560_-	Uncharacterized protein conserved in bacteria (DUF2179)	NA	NA	NA	NA
SQF46601.1\|1987830_1988652_-	NH(3)-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.8e-69	52.7
SQF46604.1\|1988644_1990114_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	4.5e-108	45.1
SQF46606.1\|1990297_1991374_+	nitric-oxide synthase	NA	NA	NA	NA
SQF46608.1\|1991393_1992188_+	ACT domain protein	NA	NA	NA	NA
SQF46610.1\|1992377_1993940_-	sodium-dependent dicarboxylate transporter sdcS	NA	NA	NA	NA
SQF46612.1\|1994144_1995242_-	cell wall surface anchor family protein	U5PWM6	Bacillus_phage	1.9e-47	34.6
SQF46613.1\|1995613_1996174_+	Nicotinamidase	G3MA16	Bacillus_virus	2.0e-32	41.2
SQF46615.1\|1996226_1997156_+	inorganic pyrophosphatase	NA	NA	NA	NA
SQF46617.1\|1997575_1998955_+	Aldehyde dehydrogenase	NA	NA	NA	NA
SQF46619.1\|1999074_2000103_-	6-phosphogluconolactonase	NA	NA	NA	NA
SQF46621.1\|2000372_2000774_+	yolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
SQF46623.1\|2001346_2001520_-	exported protein	NA	NA	NA	NA
SQF46633.1\|2001898_2003011_+	choloylglycine hydrolase	NA	NA	NA	NA
SQF46637.1\|2003067_2003910_-	exported protein	NA	NA	NA	NA
SQF46639.1\|2003906_2004464_-	Predicted membrane protein	NA	NA	NA	NA
SQF46641.1\|2004523_2005048_-	membrane protein	NA	NA	NA	NA
SQF46643.1\|2005168_2005732_+	Thioredoxin	NA	NA	NA	NA
SQF46645.1\|2005797_2006538_-	ABC-2 transporter family protein	NA	NA	NA	NA
SQF46647.1\|2006537_2007410_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
SQF46649.1\|2007406_2008087_-	membrane protein	NA	NA	NA	NA
SQF46651.1\|2008087_2008984_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
SQF46653.1\|2008980_2009361_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQF46656.1\|2009624_2009801_-	membrane protein	NA	NA	NA	NA
SQF46664.1\|2010341_2011628_+	Aspartate aminotransferase	NA	NA	NA	NA
SQF46676.1\|2011951_2012242_-	truncated map-w protein; extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA
SQF46684.1\|2012252_2014007_-	MHC class II analog (pseudogene)	NA	NA	NA	NA
SQF46690.1\|2014392_2014593_+	beta-hemolysin	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
SQF46692.1\|2015767_2016118_-	Involved in expression of fibrinogen binding protein, phage associated	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
SQF46694.1\|2016627_2016924_-	amidase (fragment)	A0A1P8L6B4	Staphylococcus_phage	9.5e-50	98.0
SQF46695.1\|2017614_2018106_-	Staphylokinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
SQF46697.1\|2018296_2019052_-	Autolysin	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
SQF46699.1\|2019063_2019318_-\|holin	Phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
SQF46701.1\|2019814_2020588_-	enterotoxin P, phage associated	A0A1X9H080	Staphylococcus_phage	1.1e-145	100.0
SQF46702.1\|2020960_2021335_-	phage protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
SQF46704.1\|2021390_2021678_-	phi PVL ORF 22-like protein	A0A1X9H0N7	Staphylococcus_phage	7.6e-44	100.0
SQF46706.1\|2021723_2021876_-	phage protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
SQF46708.1\|2021868_2025651_-	phage minor structural, N-terminal region domain protein	A0A1X9H096	Staphylococcus_phage	0.0e+00	99.7
SQF46710.1\|2025666_2027151_-	bacteriophage protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
SQF46711.1\|2027147_2031677_-\|tail	TP901 family phage tail tape measure protein	A0A1X9H084	Staphylococcus_phage	0.0e+00	100.0
SQF46713.1\|2031733_2031871_-	phage protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
SQF46715.1\|2031921_2032272_-	phage protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
SQF46717.1\|2032587_2033232_-\|tail	phage major tail protein	W5R9H4	Staphylococcus_phage	6.5e-120	100.0
SQF46718.1\|2033232_2033640_-	putative bacteriophage protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
SQF46720.1\|2033636_2034041_-	bacteriophage protein	A0A2I6PDJ6	Staphylococcus_phage	4.3e-69	100.0
SQF46721.1\|2034037_2034400_-\|head,tail	phage head-tail adaptor	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
SQF46724.1\|2034383_2034668_-	Gp6 protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
SQF46726.1\|2034657_2034942_-\|terminase	phage terminase small subunit	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
SQF46728.1\|2034961_2036107_-\|capsid	Phage major capsid protein	A0A1X9H072	Staphylococcus_phage	5.6e-215	100.0
SQF46730.1\|2036130_2036868_-	ATP-dependent endopeptidase clp proteolytic subunit	C8CH20	Staphylococcus_phage	2.3e-129	100.0
SQF46731.1\|2036851_2038039_-	Portal protein, phage associated	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
SQF46733.1\|2038054_2039716_-\|terminase	Phage terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
SQF46735.1\|2039712_2040057_-	phage protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
SQF46737.1\|2040187_2040487_-	phage-associated homing endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
SQF46739.1\|2040718_2041135_-	phage transcriptional regulator	A0A1X9H0U8	Staphylococcus_phage	2.9e-76	100.0
SQF46741.1\|2041162_2041363_-	phage protein	R9QT57	Staphylococcus_phage	1.4e-28	98.5
SQF46743.1\|2041362_2041512_-	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
SQF46745.1\|2041508_2041715_-	phage protein	A0A1X9H0C2	Staphylococcus_phage	1.3e-21	100.0
SQF46746.1\|2041751_2042288_-	dUTPase family protein	A0A1X9H0S5	Staphylococcus_phage	1.4e-96	100.0
SQF46748.1\|2042280_2042691_-	putative phi PVL-like protein	C8CH13	Staphylococcus_phage	2.3e-70	100.0
SQF46750.1\|2042687_2043197_-	Uncharacterised protein	A0A1X9H0D4	Staphylococcus_phage	3.2e-93	100.0
SQF46752.1\|2043193_2043643_-	YopX-family protein	A0A2I6PDH2	Staphylococcus_phage	2.1e-80	99.3
SQF46754.1\|2043707_2043950_-	phage family protein	A0EWX8	Staphylococcus_phage	3.9e-41	100.0
SQF46756.1\|2043953_2044322_-	Phage protein	W5RAK8	Staphylococcus_phage	8.2e-51	100.0
SQF46758.1\|2044334_2044739_-	phage protein	A0A0E3XBN4	Staphylococcus_phage	1.4e-72	100.0
SQF46760.1\|2044747_2044966_-	phage protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
SQF46762.1\|2044972_2045857_-	Phage protein	S4V6D4	Staphylococcus_phage	3.1e-136	95.9
SQF46764.1\|2045886_2046357_-	Single-stranded DNA-binding protein, phage associated	A0A0E3T9H6	Staphylococcus_phage	4.8e-80	99.4
SQF46766.1\|2046357_2046843_-	Metallo-beta-lactamase superfamily domain protein in prophage	S4SWA4	Staphylococcus_phage	9.4e-87	100.0
SQF46768.1\|2047055_2047976_-	recombinase, phage RecT family protein	A0A1V0E5D7	Staphylococcus_phage	1.0e-166	100.0
SQF46770.1\|2047977_2049921_-	Uncharacterized conserved protein	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	99.1
SQF46772.1\|2049929_2050193_-	phage protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
SQF46774.1\|2050201_2050462_-	putative phi PVL-like protein	A0A1W6JQ03	Staphylococcus_phage	7.6e-43	100.0
SQF46776.1\|2050554_2050716_-	phage protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
SQF46778.1\|2050712_2051033_-	Uncharacterized protein conserved in bacteria	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
SQF46780.1\|2051091_2051724_+	phage protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
SQF46782.1\|2051738_2051879_-	phage protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
SQF46783.1\|2051909_2052104_-	Phage protein	A0A1X9H0A2	Staphylococcus_phage	1.5e-19	100.0
SQF46785.1\|2052120_2052873_-	antirepressor	A0A1X9H0A0	Staphylococcus_phage	8.7e-140	100.0
SQF46787.1\|2052929_2053469_+	putative phi PVL-like protein	A7TW92	Staphylococcus_phage	1.7e-97	100.0
SQF46789.1\|2053492_2053753_-	putative phi PVL-like protein	A7TW91	Staphylococcus_phage	2.7e-40	100.0
SQF46791.1\|2053765_2054005_-	putative plasmid copy control protein	G4KNM9	Staphylococcus_phage	2.3e-38	100.0
SQF46793.1\|2054175_2054883_+	phage transcriptional regulator	G4KNM8	Staphylococcus_phage	7.7e-130	100.0
SQF46794.1\|2054894_2055050_+	phage protein	A0A2I6PDR9	Staphylococcus_phage	6.3e-21	100.0
SQF46796.1\|2055036_2055222_+	phage protein	A0A2I6PDS4	Staphylococcus_phage	2.3e-25	100.0
SQF46797.1\|2055421_2055589_+	Putative cytosolic protein	Q4ZDJ4	Staphylococcus_virus	1.7e-24	100.0
SQF46799.1\|2055728_2056268_+	PemK-like growth inhibitor protein	U5U4R0	Staphylococcus_phage	9.0e-14	33.1
SQF46801.1\|2056440_2057478_+	DNA integration/recombination/inversion protein	A0A1X9H022	Staphylococcus_phage	2.6e-179	100.0
SQF46803.1\|2057534_2058359_+	phospholipase C	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
SQF46805.1\|2058596_2059613_-	gamma-hemolysin component B	A0A2I6PER8	Staphylococcus_phage	1.1e-25	29.0
SQF46807.1\|2059634_2060690_-	Leukocidin S subunit	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3

DBSCAN-SWA_10

2199445 : 2271291

Staphylococcus_phage(30.77%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF47028.1\|2199445_2200618_-\|transposase	IS256-like transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
SQF47029.1\|2200714_2200990_-	SAP domain-containing protein	NA	NA	NA	NA
SQF47030.1\|2202075_2202933_-	Putative cytosolic protein	NA	NA	NA	NA
SQF47031.1\|2203000_2203783_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.7e-09	29.5
SQF47032.1\|2204014_2205820_-	glucosamine--fructose-6-phosphate aminotransferase	M1H1Z3	Paramecium_bursaria_Chlorella_virus	2.0e-97	38.6
SQF47033.1\|2206500_2208039_+	PTS system, mannitol specific IIBC component	NA	NA	NA	NA
SQF47034.1\|2208073_2210206_+	PTS system mannitol (Cryptic)-specific transporter subunit IIA	NA	NA	NA	NA
SQF47035.1\|2210217_2210652_+	PTS system mannitol-specific transporter subunit IIA	NA	NA	NA	NA
SQF47036.1\|2210651_2211758_+	Mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
SQF47037.1\|2212076_2219513_-	FmtB protein	A0A2H4PQU6	Staphylococcus_phage	3.4e-18	23.5
SQF47038.1\|2219789_2221145_-	Phosphoglucosamine mutase / FemD, factor involved in methicillin resistance	NA	NA	NA	NA
SQF47039.1\|2221171_2222104_-	ybbR-like family protein	NA	NA	NA	NA
SQF47040.1\|2222105_2222915_-	ABC transporter, permease protein YbbP clustered with maltose/maltodextrin transporter / Tlr1762 protein	NA	NA	NA	NA
SQF47041.1\|2223103_2224012_-	Arginase	A0A1V0SJM8	Klosneuvirus	3.2e-27	32.0
SQF47042.1\|2224237_2225440_+\|transposase	IS1181 transposase	NA	NA	NA	NA
SQF47043.1\|2231850_2232915_-	Iron-sulfur cluster assembly/repair protein ApbC	NA	NA	NA	NA
SQF47044.1\|2233062_2233584_-	Similar to multidrug resistance protein	NA	NA	NA	NA
SQF47045.1\|2233568_2234492_-	multidrug resistance transporter	NA	NA	NA	NA
SQF47046.1\|2234813_2235281_-	SmrB	NA	NA	NA	NA
SQF47047.1\|2235385_2236729_-	Multidrug resistance protein B	NA	NA	NA	NA
SQF47048.1\|2236905_2237592_-	hemolysin III-like protein	NA	NA	NA	NA
SQF47049.1\|2237607_2238795_-	N-acetylglucosamine-1-phosphate uridyltransferase eukaryotic	NA	NA	NA	NA
SQF47050.1\|2238838_2239354_-	membrane-bound metal-dependent hydrolase	NA	NA	NA	NA
SQF47051.1\|2239530_2239791_+	Putative cytosolic protein	NA	NA	NA	NA
SQF47052.1\|2239922_2241293_-	nucleoside recognition domain-containing protein	NA	NA	NA	NA
SQF47054.1\|2241528_2242497_-	Heme ABC type transporter HtsABC, permease protein HtsC	A0A2H4IY97	uncultured_Caudovirales_phage	1.3e-15	28.8
SQF47056.1\|2242493_2243525_-	Heme ABC type transporter HtsABC, permease protein HtsB	NA	NA	NA	NA
SQF47058.1\|2243536_2244520_-	iron(III) dicitrate-binding protein	NA	NA	NA	NA
SQF47060.1\|2244911_2245982_-	alanine racemase	NA	NA	NA	NA
SQF47062.1\|2245988_2247746_-	Siderophore biosynthesis protein	NA	NA	NA	NA
SQF47064.1\|2247732_2248926_-	Macrolide-efflux protein	NA	NA	NA	NA
SQF47066.1\|2249027_2251004_+	Siderophore biosynthesis protein	NA	NA	NA	NA
SQF47068.1\|2251459_2252260_+\|transposase	transposase	A0ZS58	Staphylococcus_virus	2.3e-114	92.6
SQF47070.1\|2252277_2252577_+\|transposase	truncated transposase for IS1272	A0A146ICT8	Staphylococcus_phage	1.0e-51	100.0
SQF47072.1\|2252739_2253084_+\|transposase	transposase	Q9MBP7	Staphylococcus_prophage	2.5e-54	94.7
SQF47074.1\|2253119_2253629_-	alkaline shock protein 23	NA	NA	NA	NA
SQF47076.1\|2253691_2253931_-	small integral membrane protein-protein	NA	NA	NA	NA
SQF47078.1\|2253943_2254480_-	Uncharacterised protein	NA	NA	NA	NA
SQF47080.1\|2254654_2256217_-	Glycine betaine transporter OpuD	A0A2I7QNT1	Vibrio_phage	5.4e-19	25.0
SQF47082.1\|2256523_2257525_-	Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase (NADPH:quinone reductase)	NA	NA	NA	NA
SQF47084.1\|2257758_2258763_-	Quinone oxidoreductase	NA	NA	NA	NA
SQF47086.1\|2259042_2259912_-	alpha/beta hydrolase	NA	NA	NA	NA
SQF47088.1\|2260177_2261590_-	6-phospho-beta-galactosidase	A0A0B5JD41	Pandoravirus	5.0e-48	28.9
SQF47090.1\|2261607_2263320_-	PTS system, lactose-specific IIBC component	NA	NA	NA	NA
SQF47092.1\|2263325_2263637_-	PTS system lactose-specific transporter subunit IIA	NA	NA	NA	NA
SQF47094.1\|2263658_2264639_-	Tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA
SQF47095.1\|2264642_2265575_-	Tagatose-6-phosphate kinase / 1-phosphofructokinase	NA	NA	NA	NA
SQF47097.1\|2265587_2266103_-	Galactose-6-phosphate isomerase, LacB subunit	NA	NA	NA	NA
SQF47099.1\|2266118_2266547_-	Galactose-6-phosphate isomerase, LacA subunit	NA	NA	NA	NA
SQF47101.1\|2266914_2267670_-	lactose phosphotransferase system repressor	NA	NA	NA	NA
SQF47103.1\|2267911_2268652_+	SIR2 family protein	A0A2I2L319	Orpheovirus	7.3e-14	29.4
SQF47105.1\|2268942_2269551_-	Uncharacterised protein	NA	NA	NA	NA
SQF47107.1\|2269812_2269938_-	Doubtful CDS. No database matches	NA	NA	NA	NA
SQF47109.1\|2270118_2271291_+\|transposase	IS256-like transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0

DBSCAN-SWA_11

2658490 : 2708247

Staphylococcus_phage(22.22%)

lysis,transposase,holin,integrase

attL 2657172:2657188|attR 2673298:2673314

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2657172:2657188	attL	NA	NA	NA	NA
SQF47578.1\|2658490_2658859_-\|transposase	putative transposase	Q9MBM9	Staphylococcus_prophage	9.2e-18	46.6
SQF47579.1\|2659142_2659958_-	putative ATP-binding protein	NA	NA	NA	NA
SQF47580.1\|2659950_2661393_-\|integrase	integrase core domain-containing protein	NA	NA	NA	NA
SQF47581.1\|2661364_2661958_-	DNA-invertase hin	A0A0A7NPV4	Enterobacteria_phage	1.1e-41	51.1
SQF47582.1\|2662219_2662600_-	penicillinase repressor	NA	NA	NA	NA
SQF47583.1\|2662589_2664347_-	regulatory protein BlaR1	NA	NA	NA	NA
SQF47584.1\|2664453_2665299_+	beta-lactamase	A0A1B0VBP7	Salmonella_phage	1.5e-31	34.0
SQF47585.1\|2665571_2666087_-\|transposase	putative transposase	NA	NA	NA	NA
SQF47586.1\|2666195_2666552_-	lipoprotein	NA	NA	NA	NA
SQF47587.1\|2666607_2667198_-	transposon-related protein	NA	NA	NA	NA
SQF47588.1\|2667204_2668251_-\|lysis	putative cell wall lysis protein	A0A1X9I9L1	Staphylococcus_phage	8.1e-19	36.9
SQF47589.1\|2668240_2670088_-	putative mating channel protein	NA	NA	NA	NA
SQF47590.1\|2670092_2671451_-	putative coupling protein	A0A1S5SFB5	Streptococcus_phage	1.5e-41	29.9
SQF47591.1\|2671504_2674000_-	NTPase	NA	NA	NA	NA
2673298:2673314	attR	NA	NA	NA	NA
SQF47592.1\|2674034_2674418_-	transposon-related protein	NA	NA	NA	NA
SQF47593.1\|2674429_2674690_-	transposon-related protein	NA	NA	NA	NA
SQF47594.1\|2674694_2675750_-	transposon-related protein	NA	NA	NA	NA
SQF47595.1\|2675810_2676902_-	RstA	NA	NA	NA	NA
SQF47596.1\|2677076_2677379_-	transposon-related protein	NA	NA	NA	NA
SQF47597.1\|2677392_2677713_-	transposon-related protein	NA	NA	NA	NA
SQF47598.1\|2677863_2678148_-	transposon-related protein	NA	NA	NA	NA
SQF47599.1\|2678361_2678658_-	Putative EsaC protein analog (Listeria type 3)	NA	NA	NA	NA
SQF47600.1\|2678645_2678984_-	Uncharacterised protein	NA	NA	NA	NA
SQF47601.1\|2679028_2679307_-	type VII secretion effector	NA	NA	NA	NA
SQF47602.1\|2679643_2680510_-	fructosamine kinase family protein	NA	NA	NA	NA
SQF47603.1\|2680727_2681792_+	Dihydroorotate dehydrogenase	NA	NA	NA	NA
SQF47604.1\|2681946_2682222_+	membrane protein	NA	NA	NA	NA
SQF47605.1\|2682407_2683130_-	adenine nucleotide alpha hydrolases superfamily protein	NA	NA	NA	NA
SQF47606.1\|2683485_2683935_+	Phnb	NA	NA	NA	NA
SQF47607.1\|2684015_2684603_-	TetR family regulatory protein	NA	NA	NA	NA
SQF47608.1\|2684745_2686428_+	X-Pro dipeptidyl-peptidase (S15) family protein	NA	NA	NA	NA
SQF47609.1\|2686556_2686940_-	aspartate 1-decarboxylase	NA	NA	NA	NA
SQF47610.1\|2686941_2687793_-	Pantoate--beta-alanine ligase	NA	NA	NA	NA
SQF47611.1\|2687785_2688604_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
SQF47612.1\|2688676_2689537_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
SQF47613.1\|2689622_2690327_-	Alpha-acetolactate decarboxylase	NA	NA	NA	NA
SQF47614.1\|2690604_2691564_-	L-lactate dehydrogenase	NA	NA	NA	NA
SQF47615.1\|2692249_2693698_+	amino acid permease	NA	NA	NA	NA
SQF47616.1\|2693777_2695115_-	4-aminobutyrate aminotransferase	A0A1V0SKB7	Klosneuvirus	6.7e-18	26.7
SQF47617.1\|2695368_2695785_+	Uncharacterised protein	NA	NA	NA	NA
SQF47618.1\|2695907_2696798_+	fructose-bisphosphate aldolase	A0A0K0KVJ8	Prochlorococcus_phage	1.2e-07	29.2
SQF47619.1\|2696990_2698487_-	malate:quinone oxidoreductase 2	NA	NA	NA	NA
SQF47620.1\|2699173_2700793_-	Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase	A0A2H4PQU7	Staphylococcus_phage	5.4e-78	36.8
SQF47621.1\|2700965_2701409_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
SQF47622.1\|2701688_2701901_-	Putative cytosolic protein	NA	NA	NA	NA
SQF47623.1\|2702178_2703888_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	3.8e-58	32.3
SQF47624.1\|2704148_2705639_-	Betaine aldehyde dehydrogenase	NA	NA	NA	NA
SQF47625.1\|2705891_2706455_+	ArsR family transcriptional regulator	NA	NA	NA	NA
SQF47626.1\|2706624_2708247_-\|holin	High-affinity choline uptake protein BetT	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: LS483350.1|SQF46321.1|1835459_1835684_-|putative-staphylococcal-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LS483350.1|SQF46321.1|1835459_1835684_-|putative-staphylococcal-protein

1835459_1835684_-

74 aa aa

1785136-1889365

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LS483350_10	Orphan	10.2\|2324141\|36\|LS483350\|CRT	2324141-2324176	36	1804179-1804144	1

1. spacer 10.2|2324141|36|LS483350|CRT matches to LS483350 position: 1804179-1804144, mismatch: 1

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483350

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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