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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS483361 Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179 genome assembly, chromosome: 1 2 crisprs DEDDh,csa3,DinG,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5,cas3 0 9 13 0

Results visualization

1. LS483361
LS483361 0400000800000120000016000002000000 CRISPR 1 2 Self-targeting Prophage 1 2 3 4 5 6 7 8 9 10 11 12 13 anti-CRISPR
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483361_2 1234708-1235272 TypeII II-A
8 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483361_3 1565020-1565192 TypeI I-C
2 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448824 Streptococcus phage Javan637, complete genome 15668-15697 0 1.0
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK449002 Streptococcus phage Javan642, complete genome 15623-15652 0 1.0
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK449003 Streptococcus phage Javan648, complete genome 15623-15652 0 1.0
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK448960 Streptococcus phage Javan492, complete genome 7957-7986 0 1.0
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK448762 Streptococcus phage Javan447, complete genome 8083-8112 0 1.0
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK448795 Streptococcus phage Javan527, complete genome 13640-13669 0 1.0
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK448791 Streptococcus phage Javan517, complete genome 7024-7053 0 1.0
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 NC_004587 Streptococcus prophage 315.4, complete genome 7119-7148 0 1.0
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 NC_003157 Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome 8389-8418 0 1.0
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK448977 Streptococcus phage Javan530, complete genome 7024-7053 0 1.0
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK448793 Streptococcus phage Javan523, complete genome 8244-8273 0 1.0
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK448788 Streptococcus phage Javan511, complete genome 7024-7053 0 1.0
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK448954 Streptococcus phage Javan476, complete genome 8038-8067 0 1.0
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448858 Streptococcus phage Javan166, complete genome 16919-16948 1 0.967
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448862 Streptococcus phage Javan178, complete genome 12156-12185 1 0.967
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448970 Streptococcus phage Javan516, complete genome 17188-17217 1 0.967
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448854 Streptococcus phage Javan146, complete genome 16404-16433 1 0.967
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448694 Streptococcus phage Javan179, complete genome 15361-15390 1 0.967
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448957 Streptococcus phage Javan484, complete genome 16608-16637 1 0.967
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 MK448790 Streptococcus phage Javan515, complete genome 18535-18564 1 0.967
LS483361_2 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235074-1235103 30 MK448798 Streptococcus phage Javan533, complete genome 29976-30005 1 0.967
LS483361_2 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235074-1235103 30 NC_028700 Streptococcus phage T12, complete genome 29829-29858 1 0.967
LS483361_2 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235074-1235103 30 MK448790 Streptococcus phage Javan515, complete genome 29745-29774 1 0.967
LS483361_2 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235074-1235103 30 MK448783 Streptococcus phage Javan503, complete genome 28882-28911 1 0.967
LS483361_2 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235074-1235103 30 MK448967 Streptococcus phage Javan510, complete genome 29977-30006 1 0.967
LS483361_2 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235074-1235103 30 MK448856 Streptococcus phage Javan158, complete genome 8411-8440 1 0.967
LS483361_2 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235074-1235103 30 NC_004588 Streptococcus prophage 315.5, complete genome 30126-30155 1 0.967
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK448790 Streptococcus phage Javan515, complete genome 8370-8399 1 0.967
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK448683 Streptococcus phage Javan149, complete genome 9848-9877 1 0.967
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 NC_004585 Streptococcus prophage 315.2, complete genome 15785-15814 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448965 Streptococcus phage Javan506, complete genome 14832-14861 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448955 Streptococcus phage Javan478, complete genome 15424-15453 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448966 Streptococcus phage Javan508, complete genome 15640-15669 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448795 Streptococcus phage Javan527, complete genome 19679-19708 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448791 Streptococcus phage Javan517, complete genome 12155-12184 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448959 Streptococcus phage Javan488, complete genome 14832-14861 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448672 Streptococcus phage Javan117, complete genome 11557-11586 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 NC_004587 Streptococcus prophage 315.4, complete genome 12250-12279 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448945 Streptococcus phage Javan454, complete genome 15048-15077 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 NC_003157 Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome 13520-13549 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448849 Streptococcus phage Javan128, complete genome 11106-11135 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448772 Streptococcus phage Javan483, complete genome 15655-15684 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448962 Streptococcus phage Javan496, complete genome 6432-6461 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448977 Streptococcus phage Javan530, complete genome 12155-12184 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448949 Streptococcus phage Javan460, complete genome 15492-15521 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448783 Streptococcus phage Javan503, complete genome 13071-13100 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448788 Streptococcus phage Javan511, complete genome 12155-12184 2 0.933
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 MK449010 Streptococcus phage Javan90, complete genome 18079-18108 2 0.933
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 MK448798 Streptococcus phage Javan533, complete genome 18862-18891 2 0.933
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 MK448681 Streptococcus phage Javan141, complete genome 18454-18483 2 0.933
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 NC_028700 Streptococcus phage T12, complete genome 18713-18742 2 0.933
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 MK448967 Streptococcus phage Javan510, complete genome 18863-18892 2 0.933
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 MK448833 Streptococcus phage Javan87, complete genome 18079-18108 2 0.933
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 MK448683 Streptococcus phage Javan149, complete genome 20992-21021 2 0.933
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 NC_004588 Streptococcus prophage 315.5, complete genome 19012-19041 2 0.933
LS483361_2 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235074-1235103 30 MK449010 Streptococcus phage Javan90, complete genome 29240-29269 2 0.933
LS483361_2 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235074-1235103 30 MK448833 Streptococcus phage Javan87, complete genome 29240-29269 2 0.933
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MK449012 Streptococcus phage Javan94, complete genome 6815-6844 2 0.933
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK449010 Streptococcus phage Javan90, complete genome 13493-13522 3 0.9
LS483361_2 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234810-1234839 30 MK448833 Streptococcus phage Javan87, complete genome 13493-13522 3 0.9
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK448960 Streptococcus phage Javan492, complete genome 7957-7990 3 0.912
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK448762 Streptococcus phage Javan447, complete genome 8083-8116 3 0.912
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK448795 Streptococcus phage Javan527, complete genome 13640-13673 3 0.912
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK448791 Streptococcus phage Javan517, complete genome 7024-7057 3 0.912
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 NC_004587 Streptococcus prophage 315.4, complete genome 7119-7152 3 0.912
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 NC_003157 Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome 8389-8422 3 0.912
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK448977 Streptococcus phage Javan530, complete genome 7024-7057 3 0.912
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK448793 Streptococcus phage Javan523, complete genome 8244-8277 3 0.912
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK448788 Streptococcus phage Javan511, complete genome 7024-7057 3 0.912
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK448954 Streptococcus phage Javan476, complete genome 8038-8071 3 0.912
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 JX409894 Streptococcus phage LYGO9, complete genome 39418-39447 3 0.9
LS483361_3 3.4|1565137|30|LS483361|PILER-CR 1565137-1565166 30 MK448860 Streptococcus phage Javan172, complete genome 11295-11324 3 0.9
LS483361_3 3.4|1565137|30|LS483361|PILER-CR 1565137-1565166 30 MK448672 Streptococcus phage Javan117, complete genome 9540-9569 3 0.9
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK448790 Streptococcus phage Javan515, complete genome 8370-8403 4 0.882
LS483361_3 3.2|1565124|33|LS483361|CRISPRCasFinder 1565124-1565156 33 MK448860 Streptococcus phage Javan172, complete genome 11292-11324 4 0.879
LS483361_3 3.2|1565124|33|LS483361|CRISPRCasFinder 1565124-1565156 33 MK448672 Streptococcus phage Javan117, complete genome 9537-9569 4 0.879
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK448683 Streptococcus phage Javan149, complete genome 9848-9881 5 0.853
LS483361_3 3.4|1565137|30|LS483361|PILER-CR 1565137-1565166 30 MK448675 Streptococcus phage Javan129, complete genome 14051-14080 5 0.833
LS483361_3 3.4|1565137|30|LS483361|PILER-CR 1565137-1565166 30 MK448681 Streptococcus phage Javan141, complete genome 10012-10041 5 0.833
LS483361_3 3.4|1565137|30|LS483361|PILER-CR 1565137-1565166 30 MK448676 Streptococcus phage Javan131, complete genome 16420-16449 5 0.833
LS483361_2 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234876-1234905 30 NZ_KY000033 Agrobacterium rhizogenes strain 26-59 plasmid pRi_26-59, complete sequence 30890-30919 6 0.8
LS483361_2 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234876-1234905 30 NZ_CP019703 Agrobacterium rhizogenes strain K599 (NCPPB2659) plasmid pRi2659, complete sequence 177592-177621 6 0.8
LS483361_2 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234876-1234905 30 NC_010841 Agrobacterium rhizogenes plasmid pRi2659, complete sequence 30896-30925 6 0.8
LS483361_2 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234876-1234905 30 NC_002575 Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence 59735-59764 6 0.8
LS483361_2 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234876-1234905 30 NZ_KY000038 Agrobacterium rhizogenes strain 1724 plasmid pRi_1724, complete sequence 109440-109469 6 0.8
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 NZ_CP030355 Novosphingobium sp. P6W plasmid pP6W2, complete sequence 52281-52310 6 0.8
LS483361_2 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235008-1235037 30 NZ_CP017887 Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence 279305-279334 6 0.8
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 MK449012 Streptococcus phage Javan94, complete genome 6815-6848 6 0.824
LS483361_2 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234876-1234905 30 NZ_CP010270 Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence 33720-33749 7 0.767
LS483361_2 2.7|1235140|31|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235140-1235170 31 NZ_CP011809 Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence 28200-28230 7 0.774
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 MG602477 Bacillus phage BCP01, complete genome 38363-38392 7 0.767
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 KX495186 Bacillus phage PK16, complete genome 139956-139985 7 0.767
LS483361_3 3.4|1565137|30|LS483361|PILER-CR 1565137-1565166 30 MK448694 Streptococcus phage Javan179, complete genome 12890-12919 7 0.767
LS483361_2 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR 1234876-1234905 30 NZ_HG938356 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence 1262360-1262389 8 0.733
LS483361_3 3.3|1565067|30|LS483361|PILER-CR 1565067-1565096 30 AP013460 Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S40-C18 28882-28911 8 0.733
LS483361_2 2.7|1235140|31|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235140-1235170 31 NZ_CP019033 Lactobacillus fermentum strain SNUV175 plasmid pSNU175-4, complete sequence 9042-9072 9 0.71
LS483361_2 2.7|1235140|31|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235140-1235170 31 NZ_CP015881 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence 786583-786613 9 0.71
LS483361_2 2.7|1235140|31|LS483361|CRISPRCasFinder,CRT,PILER-CR 1235140-1235170 31 NZ_CP015882 Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence 933163-933193 9 0.71
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 NZ_CP016613 Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence 1807845-1807878 10 0.706
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 NZ_CP049788 Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence 748588-748621 10 0.706
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 NZ_CP052069 Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence 823066-823099 10 0.706
LS483361_3 3.1|1565055|34|LS483361|CRISPRCasFinder 1565055-1565088 34 NZ_CP022482 Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence 246821-246854 10 0.706

1. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448824 (Streptococcus phage Javan637, complete genome) position: , mismatch: 0, identity: 1.0

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgtggttgccttggctcaaatgagtaagta	Protospacer
******************************

2. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK449002 (Streptococcus phage Javan642, complete genome) position: , mismatch: 0, identity: 1.0

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgtggttgccttggctcaaatgagtaagta	Protospacer
******************************

3. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK449003 (Streptococcus phage Javan648, complete genome) position: , mismatch: 0, identity: 1.0

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgtggttgccttggctcaaatgagtaagta	Protospacer
******************************

4. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 0, identity: 1.0

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacggaatttgatgt	Protospacer
******************************

5. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 0, identity: 1.0

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacggaatttgatgt	Protospacer
******************************

6. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 0, identity: 1.0

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacggaatttgatgt	Protospacer
******************************

7. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 0, identity: 1.0

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacggaatttgatgt	Protospacer
******************************

8. spacer 3.3|1565067|30|LS483361|PILER-CR matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 0, identity: 1.0

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacggaatttgatgt	Protospacer
******************************

9. spacer 3.3|1565067|30|LS483361|PILER-CR matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 0, identity: 1.0

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacggaatttgatgt	Protospacer
******************************

10. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 0, identity: 1.0

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacggaatttgatgt	Protospacer
******************************

11. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 0, identity: 1.0

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacggaatttgatgt	Protospacer
******************************

12. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 0, identity: 1.0

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacggaatttgatgt	Protospacer
******************************

13. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 0, identity: 1.0

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacggaatttgatgt	Protospacer
******************************

14. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 1, identity: 0.967

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgccttggctcaaatgagtaagta	Protospacer
**.***************************

15. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.967

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgaggttgccttggctcaaatgagtaagta	Protospacer
** ***************************

16. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 1, identity: 0.967

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgccttggctcaaatgagtaagta	Protospacer
**.***************************

17. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 1, identity: 0.967

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgtggttgccttagctcaaatgagtaagta	Protospacer
************.*****************

18. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448694 (Streptococcus phage Javan179, complete genome) position: , mismatch: 1, identity: 0.967

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgaggttgccttggctcaaatgagtaagta	Protospacer
** ***************************

19. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 1, identity: 0.967

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgccttggctcaaatgagtaagta	Protospacer
**.***************************

20. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 1, identity: 0.967

atgcacgctaactgccgcagcacatttgct	CRISPR spacer
atgcacgctaactgtcgcagcacatttgct	Protospacer
**************.***************

21. spacer 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 1, identity: 0.967

tgcttgccatctgagcctttatcgccgtaa	CRISPR spacer
tgcttgccatctgaacctttatcgccgtaa	Protospacer
**************.***************

22. spacer 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 1, identity: 0.967

tgcttgccatctgagcctttatcgccgtaa	CRISPR spacer
tgcttgccatctgaacctttatcgccgtaa	Protospacer
**************.***************

23. spacer 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 1, identity: 0.967

tgcttgccatctgagcctttatcgccgtaa	CRISPR spacer
tgcttgccatctgaacctttatcgccgtaa	Protospacer
**************.***************

24. spacer 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 1, identity: 0.967

tgcttgccatctgagcctttatcgccgtaa	CRISPR spacer
tgcttgccatctgaacctttatcgccgtaa	Protospacer
**************.***************

25. spacer 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 1, identity: 0.967

tgcttgccatctgagcctttatcgccgtaa	CRISPR spacer
tgcttgccatctgaacctttatcgccgtaa	Protospacer
**************.***************

26. spacer 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448856 (Streptococcus phage Javan158, complete genome) position: , mismatch: 1, identity: 0.967

tgcttgccatctgagcctttatcgccgtaa	CRISPR spacer
tgcttgccatctgaacctttatcgccgtaa	Protospacer
**************.***************

27. spacer 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 1, identity: 0.967

tgcttgccatctgagcctttatcgccgtaa	CRISPR spacer
tgcttgccatctgaacctttatcgccgtaa	Protospacer
**************.***************

28. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 1, identity: 0.967

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagacagaatttgatgt	Protospacer
******************.***********

29. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 1, identity: 0.967

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactatatcgagacggaatttgatgt	Protospacer
*********.********************

30. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcagttgccttggctcaaatgagtaagta	Protospacer
**..**************************

31. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgtgattgccttggctcaaaggagtaagta	Protospacer
****.*************** *********

32. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

33. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcagttgccttggctcaaatgagtaagta	Protospacer
**..**************************

34. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

35. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

36. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgtgattgccttggctcaaaggagtaagta	Protospacer
****.*************** *********

37. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

38. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

39. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

40. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

41. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

42. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcagttgccttggctcaaatgagtaagta	Protospacer
**..**************************

43. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448962 (Streptococcus phage Javan496, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgtgattgccttggctcaaaggagtaagta	Protospacer
****.*************** *********

44. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

45. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgtgattgccttggctcaaaggagtaagta	Protospacer
****.*************** *********

46. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

47. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 2, identity: 0.933

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tgcggttgtcttggctcaaatgagtaagta	Protospacer
**.*****.*********************

48. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 2, identity: 0.933

atgcacgctaactgccgcagcacatttgct	CRISPR spacer
atgcacgctaactgtcgcagcacgtttgct	Protospacer
**************.********.******

49. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 2, identity: 0.933

atgcacgctaactgccgcagcacatttgct	CRISPR spacer
atgcacgctaactgtcgcagcacgtttgct	Protospacer
**************.********.******

50. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 2, identity: 0.933

atgcacgctaactgccgcagcacatttgct	CRISPR spacer
atgcacgctaactgtcgcagcacgtttgct	Protospacer
**************.********.******

51. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 2, identity: 0.933

atgcacgctaactgccgcagcacatttgct	CRISPR spacer
atgcacgctaactgtcgcagcacgtttgct	Protospacer
**************.********.******

52. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 2, identity: 0.933

atgcacgctaactgccgcagcacatttgct	CRISPR spacer
atgcacgctaactgtcgcagcacgtttgct	Protospacer
**************.********.******

53. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 2, identity: 0.933

atgcacgctaactgccgcagcacatttgct	CRISPR spacer
atgcacgctaactgtcgcagcacgtttgct	Protospacer
**************.********.******

54. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 2, identity: 0.933

atgcacgctaactgccgcagcacatttgct	CRISPR spacer
atgcacgctaactgtcgcagcacgtttgct	Protospacer
**************.********.******

55. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 2, identity: 0.933

atgcacgctaactgccgcagcacatttgct	CRISPR spacer
atgcacgctaactgtcgcagcacgtttgct	Protospacer
**************.********.******

56. spacer 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 2, identity: 0.933

tgcttgccatctgagcctttatcgccgtaa	CRISPR spacer
tgcttaccatctgagcctttatccccgtaa	Protospacer
*****.***************** ******

57. spacer 2.6|1235074|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 2, identity: 0.933

tgcttgccatctgagcctttatcgccgtaa	CRISPR spacer
tgcttaccatctgagcctttatccccgtaa	Protospacer
*****.***************** ******

58. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 2, identity: 0.933

gatggactacatcgagacggaatttgatgt	CRISPR spacer
aatggactacatcgagacagaatttgatgt	Protospacer
.*****************.***********

59. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 3, identity: 0.9

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tacggttgtcttggctcaaatgagtaagta	Protospacer
*..*****.*********************

60. spacer 2.2|1234810|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 3, identity: 0.9

tgtggttgccttggctcaaatgagtaagta	CRISPR spacer
tacggttgtcttggctcaaatgagtaagta	Protospacer
*..*****.*********************

61. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 3, identity: 0.912

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacggaatttgatgtatgg	Protospacer
******************************* ..

62. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 3, identity: 0.912

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacggaatttgatgtatgg	Protospacer
******************************* ..

63. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 3, identity: 0.912

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacggaatttgatgtatgg	Protospacer
******************************* ..

64. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 3, identity: 0.912

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacggaatttgatgtatgg	Protospacer
******************************* ..

65. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 3, identity: 0.912

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacggaatttgatgtatgg	Protospacer
******************************* ..

66. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 3, identity: 0.912

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacggaatttgatgtatgg	Protospacer
******************************* ..

67. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 3, identity: 0.912

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacggaatttgatgtatgg	Protospacer
******************************* ..

68. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 3, identity: 0.912

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacggaatttgatgtatgg	Protospacer
******************************* ..

69. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 3, identity: 0.912

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacggaatttgatgtatgg	Protospacer
******************************* ..

70. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 3, identity: 0.912

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacggaatttgatgtatgg	Protospacer
******************************* ..

71. spacer 3.3|1565067|30|LS483361|PILER-CR matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 3, identity: 0.9

gatggactacatcgagacggaatttgatgt	CRISPR spacer
aatggaatacatcgaaacggaatttgatgt	Protospacer
.***** ********.**************

72. spacer 3.4|1565137|30|LS483361|PILER-CR matches to MK448860 (Streptococcus phage Javan172, complete genome) position: , mismatch: 3, identity: 0.9

actgcaatcactttttggcattcccaaagt	CRISPR spacer
gctgcaatcactttttggcattcccagagc	Protospacer
.*************************.**.

73. spacer 3.4|1565137|30|LS483361|PILER-CR matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 3, identity: 0.9

actgcaatcactttttggcattcccaaagt	CRISPR spacer
gctgcaatcactttttggcattcccagagc	Protospacer
.*************************.**.

74. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 4, identity: 0.882

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactacatcgagacagaatttgatgtatgg	Protospacer
******************.************ ..

75. spacer 3.2|1565124|33|LS483361|CRISPRCasFinder matches to MK448860 (Streptococcus phage Javan172, complete genome) position: , mismatch: 4, identity: 0.879

actgcaatcactttttggcattcccaaagtaac	CRISPR spacer
gctgcaatcactttttggcattcccagagcaat	Protospacer
.*************************.**.**.

76. spacer 3.2|1565124|33|LS483361|CRISPRCasFinder matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 4, identity: 0.879

actgcaatcactttttggcattcccaaagtaac	CRISPR spacer
gctgcaatcactttttggcattcccagagcaat	Protospacer
.*************************.**.**.

77. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 5, identity: 0.853

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
gatggactatatcgagacggaatttgatgttttg	Protospacer
*********.********************   .

78. spacer 3.4|1565137|30|LS483361|PILER-CR matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 5, identity: 0.833

actgcaatcactttttggcattcccaaagt	CRISPR spacer
gttgcaataactttttggcattcccagagc	Protospacer
..****** *****************.**.

79. spacer 3.4|1565137|30|LS483361|PILER-CR matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 5, identity: 0.833

actgcaatcactttttggcattcccaaagt	CRISPR spacer
gttgcaataactttttggcattcccagagc	Protospacer
..****** *****************.**.

80. spacer 3.4|1565137|30|LS483361|PILER-CR matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 5, identity: 0.833

actgcaatcactttttggcattcccaaagt	CRISPR spacer
gttgcaataactttttggcattcccagagc	Protospacer
..****** *****************.**.

81. spacer 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000033 (Agrobacterium rhizogenes strain 26-59 plasmid pRi_26-59, complete sequence) position: , mismatch: 6, identity: 0.8

--tgaagcgaagtgtttatcgagaaaggatac	CRISPR spacer
gccgaggc--tgtgtttatcgaaaaaggatac	Protospacer
  .**.**   ***********.*********

82. spacer 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019703 (Agrobacterium rhizogenes strain K599 (NCPPB2659) plasmid pRi2659, complete sequence) position: , mismatch: 6, identity: 0.8

--tgaagcgaagtgtttatcgagaaaggatac	CRISPR spacer
gccgaggc--tgtgtttatcgaaaaaggatac	Protospacer
  .**.**   ***********.*********

83. spacer 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NC_010841 (Agrobacterium rhizogenes plasmid pRi2659, complete sequence) position: , mismatch: 6, identity: 0.8

--tgaagcgaagtgtttatcgagaaaggatac	CRISPR spacer
gccgaggc--tgtgtttatcgaaaaaggatac	Protospacer
  .**.**   ***********.*********

84. spacer 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NC_002575 (Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

--tgaagcgaagtgtttatcgagaaaggatac	CRISPR spacer
gccgaggc--tgtgtttatcgaaaaaggatac	Protospacer
  .**.**   ***********.*********

85. spacer 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000038 (Agrobacterium rhizogenes strain 1724 plasmid pRi_1724, complete sequence) position: , mismatch: 6, identity: 0.8

--tgaagcgaagtgtttatcgagaaaggatac	CRISPR spacer
gccgaggc--tgtgtttatcgaaaaaggatac	Protospacer
  .**.**   ***********.*********

86. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030355 (Novosphingobium sp. P6W plasmid pP6W2, complete sequence) position: , mismatch: 6, identity: 0.8

atgcacgctaactgccgcagcacat-ttgct	CRISPR spacer
cggaacgctaactgccgcaggacatagtgc-	Protospacer
  * **************** ****  *** 

87. spacer 2.5|1235008|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

atgcac-gctaactgccgcagcacatttgct	CRISPR spacer
-tgttctgctaactggcgcagcacaattgca	Protospacer
 **. * ******** ********* **** 

88. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 6, identity: 0.824

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
aatggactacatcgagacagaatttgatgtgttg	Protospacer
.*****************.***********.  .

89. spacer 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010270 (Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence) position: , mismatch: 7, identity: 0.767

tgaagcgaagtgtttatcgagaaaggatac	CRISPR spacer
ttgaatgaaatgttgatcgagaaaggatat	Protospacer
* .*..***.**** **************.

90. spacer 2.7|1235140|31|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011809 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-2, complete sequence) position: , mismatch: 7, identity: 0.774

cactctcggtgtcgtcatcaagatagacggt	CRISPR spacer
cacggagcgtgttgtcatcaagatcgacggt	Protospacer
***     ****.*********** ******

91. spacer 3.3|1565067|30|LS483361|PILER-CR matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 7, identity: 0.767

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagaaggagcgagcttt	Protospacer
***************** ***..  * * *

92. spacer 3.3|1565067|30|LS483361|PILER-CR matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 7, identity: 0.767

gatggactacatcgagacggaatttgatgt	CRISPR spacer
gatggactacatcgagaaggagcgagcttt	Protospacer
***************** ***..  * * *

93. spacer 3.4|1565137|30|LS483361|PILER-CR matches to MK448694 (Streptococcus phage Javan179, complete genome) position: , mismatch: 7, identity: 0.767

actgcaatcactttttggcattcccaaagt	CRISPR spacer
gccactataactttttggcattcccagagc	Protospacer
.*..* ** *****************.**.

94. spacer 2.3|1234876|30|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 8, identity: 0.733

tgaagcgaagtgtttatcgagaaaggatac	CRISPR spacer
gcgcgcgaagtgtttatcgagcagggattt	Protospacer
  . ***************** *.**** .

95. spacer 3.3|1565067|30|LS483361|PILER-CR matches to AP013460 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S40-C18) position: , mismatch: 8, identity: 0.733

gatggactacatcgagacggaatttgatgt	CRISPR spacer
tatggactaccacgagacggaattaagagc	Protospacer
 *********  ************ .. *.

96. spacer 2.7|1235140|31|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019033 (Lactobacillus fermentum strain SNUV175 plasmid pSNU175-4, complete sequence) position: , mismatch: 9, identity: 0.71

cactctcggtgtcgtcatcaagatagacggt	CRISPR spacer
tcgcctcggtttcgtcatctagatagacccg	Protospacer
.  .****** ******** ********   

97. spacer 2.7|1235140|31|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.71

cactctcggtgtcgtcatcaagatagacggt	CRISPR spacer
gcttgccggtggcgtcatcaatatagacgag	Protospacer
  .* .***** ********* *******. 

98. spacer 2.7|1235140|31|LS483361|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.71

cactctcggtgtcgtcatcaagatagacggt	CRISPR spacer
gcttgccggtggcgtcatcaatatagacgag	Protospacer
  .* .***** ********* *******. 

99. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
agctgaggtgatccagacggaatttgatgcaaaa	Protospacer
... **    *** ***************.****

100. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
agctgaggtgatccagacggaatttgatgcaaaa	Protospacer
... **    *** ***************.****

101. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 10, identity: 0.706

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
agctgaggtgatccagacggaatttgatgcaaaa	Protospacer
... **    *** ***************.****

102. spacer 3.1|1565055|34|LS483361|CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 10, identity: 0.706

gatggactacatcgagacggaatttgatgtaaaa	CRISPR spacer
agctgaggtgatccagacggaatttgatgcaaaa	Protospacer
... **    *** ***************.****

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 40125 : 49951 6 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 186519 : 274703 90 Staphylococcus_phage(13.64%) bacteriocin,integrase,protease,transposase,tRNA attL 177323:177339|attR 283705:283720
DBSCAN-SWA_3 293529 : 341890 49 Streptococcus_phage(30.0%) tRNA,integrase,transposase,holin attL 285897:285913|attR 310775:310791
DBSCAN-SWA_4 412838 : 466623 80 Streptococcus_phage(55.38%) integrase,portal,terminase,capsid,tail attL 415272:415294|attR 463487:463509
DBSCAN-SWA_5 504306 : 515731 17 Streptococcus_phage(83.33%) NA NA
DBSCAN-SWA_6 519994 : 626113 107 Staphylococcus_phage(16.13%) bacteriocin,integrase,protease,transposase,tRNA attL 570353:570412|attR 625225:626536
DBSCAN-SWA_7 884049 : 953366 60 Bacillus_phage(23.81%) tRNA,transposase,protease NA
DBSCAN-SWA_8 969522 : 1027226 59 Bacillus_phage(26.32%) integrase,transposase attL 970671:970710|attR 1024325:1024364
DBSCAN-SWA_9 1362418 : 1420966 53 Streptococcus_phi-m46.1-like_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_10 1503813 : 1548086 43 Klosneuvirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_11 1859882 : 1905032 45 Bacillus_phage(15.38%) tRNA,integrase,transposase,protease attL 1880905:1880920|attR 1895769:1895784
DBSCAN-SWA_12 2031376 : 2106894 88 Streptococcus_phage(53.45%) integrase,head,terminase,transposase,capsid,tail attL 2058778:2058798|attR 2104309:2104329
DBSCAN-SWA_13 2152723 : 2164222 9 Streptococcus_phage(50.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage