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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS483372 Pseudomonas fluorescens strain NCTC10038 genome assembly, chromosome: 1 1 crisprs RT,DEDDh,DinG,csa3,cas3,WYL 2 2 9 0

Results visualization

1. LS483372
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483372_2 3893793-3893937 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
LS483372_1 1.2|2104198|18|LS483372|CRT 2104198-2104215 18 LS483372.1 2103454-2103471 1 0.944
LS483372_1 1.3|2104234|30|LS483372|CRT 2104234-2104263 30 LS483372.1 2104114-2104143 2 0.933
LS483372_1 1.3|2104234|30|LS483372|CRT 2104234-2104263 30 LS483372.1 2104126-2104155 2 0.933

1. spacer 1.2|2104198|18|LS483372|CRT matches to position: 2103454-2103471, mismatch: 1, identity: 0.944

ggatccgaagccagaccc	CRISPR spacer
ggatccgaagcccgaccc	Protospacer
************ *****

2. spacer 1.3|2104234|30|LS483372|CRT matches to position: 2104114-2104143, mismatch: 2, identity: 0.933

ggatccaaagccggatccgaagccagaccc	CRISPR spacer
ggatccaaagccggatccgaagccggatcc	Protospacer
************************.**.**

3. spacer 1.3|2104234|30|LS483372|CRT matches to position: 2104126-2104155, mismatch: 2, identity: 0.933

ggatccaaagccggatccgaagccagaccc	CRISPR spacer
ggatccgaagccggatccgaagccagatcc	Protospacer
******.********************.**

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LS483372_1 1.1|2104150|30|LS483372|CRT 2104150-2104179 30 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4229446-4229475 6 0.8
LS483372_1 1.1|2104150|30|LS483372|CRT 2104150-2104179 30 NZ_CP023068 Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence 1348588-1348617 6 0.8
LS483372_1 1.1|2104150|30|LS483372|CRT 2104150-2104179 30 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 684673-684702 7 0.767
LS483372_1 1.3|2104234|30|LS483372|CRT 2104234-2104263 30 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 545908-545937 7 0.767
LS483372_1 1.3|2104234|30|LS483372|CRT 2104234-2104263 30 MK376351 Pseudomonas sp. strain ANT_H62 plasmid pA62H2, complete sequence 36559-36588 8 0.733
LS483372_1 1.1|2104150|30|LS483372|CRT 2104150-2104179 30 KJ578766 Propionibacterium phage PHL067M09, complete genome 7732-7761 9 0.7
LS483372_1 1.1|2104150|30|LS483372|CRT 2104150-2104179 30 NC_027380 Propionibacterium phage PHL067M01, complete genome 7732-7761 9 0.7
LS483372_1 1.1|2104150|30|LS483372|CRT 2104150-2104179 30 KJ578773 Propionibacterium phage PHL092M00, complete genome 7750-7779 9 0.7
LS483372_1 1.1|2104150|30|LS483372|CRT 2104150-2104179 30 JX570709 Propionibacterium phage PHL067M10, complete genome 7732-7761 9 0.7

1. spacer 1.1|2104150|30|LS483372|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.8

agatccgaagccggatccgaagccagaccc---	CRISPR spacer
agacccgaagccggatccgaag---gattccga	Protospacer
***.******************   **..*   

2. spacer 1.1|2104150|30|LS483372|CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 6, identity: 0.8

agatccgaagccggatccgaagccagaccc	CRISPR spacer
agtgccgaagccggagccgaagccatccgc	Protospacer
**  *********** *********  * *

3. spacer 1.1|2104150|30|LS483372|CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 7, identity: 0.767

agatccgaagccggatccgaagccagaccc	CRISPR spacer
cgatccgaagccggatccaaagacaatgcg	Protospacer
 *****************.*** **.  * 

4. spacer 1.3|2104234|30|LS483372|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

ggatccaaagccggatccgaagccagaccc	CRISPR spacer
gcatccaaagccgcatccaaagccactcgg	Protospacer
* *********** ****.******  *  

5. spacer 1.3|2104234|30|LS483372|CRT matches to MK376351 (Pseudomonas sp. strain ANT_H62 plasmid pA62H2, complete sequence) position: , mismatch: 8, identity: 0.733

ggatccaaagccggatccgaagccagaccc	CRISPR spacer
ttggtcaaagccgaaaccgaagccagacca	Protospacer
  . .********.* ************* 

6. spacer 1.1|2104150|30|LS483372|CRT matches to KJ578766 (Propionibacterium phage PHL067M09, complete genome) position: , mismatch: 9, identity: 0.7

agatccgaagccggatccgaagccagaccc	CRISPR spacer
ttctccgaagccggatccgaatccgccgtc	Protospacer
   ****************** **.   .*

7. spacer 1.1|2104150|30|LS483372|CRT matches to NC_027380 (Propionibacterium phage PHL067M01, complete genome) position: , mismatch: 9, identity: 0.7

agatccgaagccggatccgaagccagaccc	CRISPR spacer
ttctccgaagccggatccgaatccgccgtc	Protospacer
   ****************** **.   .*

8. spacer 1.1|2104150|30|LS483372|CRT matches to KJ578773 (Propionibacterium phage PHL092M00, complete genome) position: , mismatch: 9, identity: 0.7

agatccgaagccggatccgaagccagaccc	CRISPR spacer
ttctccgaagccggatccgaatccgccggc	Protospacer
   ****************** **.    *

9. spacer 1.1|2104150|30|LS483372|CRT matches to JX570709 (Propionibacterium phage PHL067M10, complete genome) position: , mismatch: 9, identity: 0.7

agatccgaagccggatccgaagccagaccc	CRISPR spacer
ttctccgaagccggatccgaatccgccgtc	Protospacer
   ****************** **.   .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 362089 : 390648 36 Pseudomonas_phage(74.07%) integrase,head,capsid,terminase,tail,lysis,portal attL 361218:361270|attR 395470:395522
DBSCAN-SWA_2 900225 : 962164 60 Enterobacteria_phage(16.67%) tRNA,integrase,protease,transposase attL 917008:917024|attR 962372:962388
DBSCAN-SWA_3 971781 : 1020691 52 Ralstonia_phage(27.27%) integrase,transposase attL 971300:971354|attR 1026679:1026733
DBSCAN-SWA_4 1025607 : 1049204 21 Shigella_phage(28.57%) integrase,transposase attL 1013769:1013782|attR 1051047:1051060
DBSCAN-SWA_5 1462185 : 1501342 44 uncultured_Caudovirales_phage(28.57%) tRNA,holin,plate,tail NA
DBSCAN-SWA_6 1781097 : 1869943 125 Pseudomonas_phage(25.93%) integrase,head,protease,terminase,tail,plate attL 1780914:1780973|attR 1829261:1829324
DBSCAN-SWA_7 3917441 : 3975753 81 Pseudomonas_phage(45.45%) head,integrase,transposase,holin,protease,terminase,tail,coat attL 3919940:3919999|attR 3973453:3973567
DBSCAN-SWA_8 3992532 : 4002151 12 uncultured_Caudovirales_phage(71.43%) tRNA NA
DBSCAN-SWA_9 6119621 : 6129815 11 Streptococcus_phage(42.86%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage