CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483362	Campylobacter jejuni subsp. jejuni strain NCTC11168 genome assembly, chromosome: 1	1 crisprs	DEDDh,WYL,c2c9_V-U4,cas2,cas1,cas9,csa3	0	8	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483362_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483362_2

1455107-1455407

TypeII

Consensus_repeat	Method
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

4 spacers

cas2,cas1,cas9

The CRISPR arrays of LS483362_2

>merge|LS483362|2|1455107-1455407|CRT,CRISPRCasFinder,PILER-CR
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATGGCAGTTTTTAAAAGAGCTTGGCGGTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTCCAAAGTTTCATTAGTTGAATTTAACTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATCTACAAGAATGAGGATGATGATATTTTACAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATGAGTGTGCTAAAAAAAATGGACTTAAATGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>LS483362|2|1|1455107-1455407|CRT
TATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGGCAGTTTTTAAAAGAGCTTGGCGGT
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAAC
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACAAGAATGAGGATGATGATATTTTAC
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATGAGTGTGCTAAAAAAAATGGACTTAAA
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>LS483362|2|2|1455108-1455407|CRISPRCasFinder
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGGCAGTTTTTAAAAGAGCTTGGCGGTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACAAGAATGAGGATGATGATATTTTACA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATGAGTGTGCTAAAAAAAATGGACTTAAAT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>LS483362|2|1|1455173-1455407|PILER-CR
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAAC
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CTACAAGAATGAGGATGATGATATTTTAC
AGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATGAGTGTGCTAAAAAAAATGGACTTAAA
TGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483362.1\|SQF80487.1\|1445685_1446327_-\|Formate-dehydrogenase-O,-iron-sulfur-subunit;-Putative-formate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|319893
LS483362.1\|SQF80504.1\|1463138_1463888_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
LS483362.1\|SQF80506.1\|1464590_1465628_-\|helix-turn-helix-containing-protein	unknown	unknown	gnl\|CDD\|224292
LS483362.1\|SQF80493.1\|1451582_1453124_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|225043
LS483362.1\|SQF80490.1\|1449127_1449319_-\|tat-domain-protein	unknown	unknown	gnl\|CDD\|236534
LS483362.1\|SQF80503.1\|1462536_1463142_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
LS483362.1\|SQF80489.1\|1448585_1449128_-\|Formate-dehydrogenase-O,-major-subunit-@-selenocysteine-containing	unknown	unknown	gnl\|CDD\|239153
LS483362.1\|SQF80492.1\|1450310_1451459_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
LS483362.1\|SQF80494.1\|1453125_1453347_+\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|224888
LS483362.1\|SQF80505.1\|1463862_1464594_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
LS483362.1\|SQF80496.1\|1453797_1454988_+\|Molybdopterin-biosynthesis-protein-MoeA	unknown	unknown	gnl\|CDD\|223380
LS483362.1\|SQF80495.1\|1453347_1453794_+\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
LS483362.1\|SQF80491.1\|1449293_1449995_-\|Putative-formate-dehydrogenase-specific-chaperone	unknown	unknown	gnl\|CDD\|225916
LS483362.1\|SQF80488.1\|1446323_1448564_-\|formate-dehydrogenase,-alpha-subunit	unknown	unknown	gnl\|CDD\|239153
LS483362.1\|SQF80500.1\|1460405_1460690_+\|cryptic-C4-dicarboxylate-transporter-DcuD,-degenerate	unknown	unknown	unknown
LS483362.1\|SQF80501.1\|1460719_1461466_+\|cryptic-C4-dicarboxylate-transporter-DcuD,-degenerate	unknown	unknown	gnl\|CDD\|182621
LS483362.1\|SQF80498.1\|1455975_1456866_-\|CRISPR-associated-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LS483362.1\|SQF80499.1\|1456862_1459817_-\|CRISPR-associated-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LS483362.1\|SQF80497.1\|1455551_1455983_-\|CRISPR-associated-Cas2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LS483362.1\|SQF80502.1\|1461486_1462476_-\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439

Protein	Function_ID	Function_description	E-value
LS483362.1\|SQF80487.1\|1445685_1446327_-\|Formate-dehydrogenase-O,-iron-sulfur-subunit;-Putative-formate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
LS483362.1\|SQF80504.1\|1463138_1463888_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	4.97072e-93
LS483362.1\|SQF80506.1\|1464590_1465628_-\|helix-turn-helix-containing-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34
LS483362.1\|SQF80493.1\|1451582_1453124_+\|oxidoreductase	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.73566e-121
LS483362.1\|SQF80490.1\|1449127_1449319_-\|tat-domain-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
LS483362.1\|SQF80503.1\|1462536_1463142_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.24929e-70
LS483362.1\|SQF80489.1\|1448585_1449128_-\|Formate-dehydrogenase-O,-major-subunit-@-selenocysteine-containing	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	9.0213e-62
LS483362.1\|SQF80492.1\|1450310_1451459_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
LS483362.1\|SQF80494.1\|1453125_1453347_+\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	2.76562e-11
LS483362.1\|SQF80505.1\|1463862_1464594_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.12305e-102
LS483362.1\|SQF80496.1\|1453797_1454988_+\|Molybdopterin-biosynthesis-protein-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
LS483362.1\|SQF80495.1\|1453347_1453794_+\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
LS483362.1\|SQF80491.1\|1449293_1449995_-\|Putative-formate-dehydrogenase-specific-chaperone	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000549526
LS483362.1\|SQF80488.1\|1446323_1448564_-\|formate-dehydrogenase,-alpha-subunit	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	3.10446e-161
LS483362.1\|SQF80501.1\|1460719_1461466_+\|cryptic-C4-dicarboxylate-transporter-DcuD,-degenerate	gnl\|CDD\|182621	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional.	2.80577e-30
LS483362.1\|SQF80498.1\|1455975_1456866_-\|CRISPR-associated-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
LS483362.1\|SQF80499.1\|1456862_1459817_-\|CRISPR-associated-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LS483362.1\|SQF80497.1\|1455551_1455983_-\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59
LS483362.1\|SQF80502.1\|1461486_1462476_-\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0

>LS483362.1|SQF80496.1|1453797_1454988_+|Molybdopterin-biosynthesis-protein-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>LS483362.1|SQF80495.1|1453347_1453794_+|molybdopterin-synthase-catalytic-subunit
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>LS483362.1|SQF80494.1|1453125_1453347_+|molybdopterin-synthase-sulfur-carrier-subunit
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFNENTKLKDGDKIALLPPVCGG
>LS483362.1|SQF80493.1|1451582_1453124_+|oxidoreductase
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLKMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>LS483362.1|SQF80492.1|1450310_1451459_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>LS483362.1|SQF80491.1|1449293_1449995_-|Putative-formate-dehydrogenase-specific-chaperone
MDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>LS483362.1|SQF80490.1|1449127_1449319_-|tat-domain-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>LS483362.1|SQF80489.1|1448585_1449128_-|Formate-dehydrogenase-O,-major-subunit-@-selenocysteine-containing
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARI
>LS483362.1|SQF80488.1|1446323_1448564_-|formate-dehydrogenase,-alpha-subunit
MANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>LS483362.1|SQF80487.1|1445685_1446327_-|Formate-dehydrogenase-O,-iron-sulfur-subunit;-Putative-formate-dehydrogenase-iron-sulfur-subunit
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>LS483362.1|SQF80497.1|1455551_1455983_-|CRISPR-associated-Cas2-family-protein
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>LS483362.1|SQF80498.1|1455975_1456866_-|CRISPR-associated-protein
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>LS483362.1|SQF80499.1|1456862_1459817_-|CRISPR-associated-protein
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLVTPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKNFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>LS483362.1|SQF80500.1|1460405_1460690_+|cryptic-C4-dicarboxylate-transporter-DcuD,-degenerate
MALKIVISSYAGLLLLACIYPVLISLKIRPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLSLNYQIYSVITYVVVNCHLDSFLFYLD
>LS483362.1|SQF80501.1|1460719_1461466_+|cryptic-C4-dicarboxylate-transporter-DcuD,-degenerate
MMKLKFRKSLILNALLFYILFPWLPVVFLFIAYFFTIKLDVVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGIKALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNTFGKLALDIATKLGVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLLIAMLVNVLVAFYLAQTNPLPKEQNTTKIELKIQK
>LS483362.1|SQF80502.1|1461486_1462476_-|Phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE
>LS483362.1|SQF80503.1|1462536_1463142_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLKKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGNM
>LS483362.1|SQF80504.1|1463138_1463888_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFF
>LS483362.1|SQF80505.1|1463862_1464594_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase-domain-containing-protein
MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>LS483362.1|SQF80506.1|1464590_1465628_-|helix-turn-helix-containing-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483362_2	2.1\|1455144\|29\|LS483362\|CRT	1455144-1455172	29	MN530981	Campylobacter phage DA10, complete genome	5260-5288	0	1.0
LS483362_2	2.2\|1455210\|29\|LS483362\|CRT,PILER-CR	1455210-1455238	29	MN530981	Campylobacter phage DA10, complete genome	33283-33311	0	1.0
LS483362_2	2.3\|1455276\|29\|LS483362\|CRT,PILER-CR	1455276-1455304	29	MN530981	Campylobacter phage DA10, complete genome	30557-30585	0	1.0
LS483362_2	2.4\|1455342\|29\|LS483362\|CRT,PILER-CR	1455342-1455370	29	MN530981	Campylobacter phage DA10, complete genome	4835-4863	0	1.0
LS483362_2	2.5\|1455144\|30\|LS483362\|CRISPRCasFinder	1455144-1455173	30	MN530981	Campylobacter phage DA10, complete genome	5259-5288	0	1.0
LS483362_2	2.6\|1455210\|30\|LS483362\|CRISPRCasFinder	1455210-1455239	30	MN530981	Campylobacter phage DA10, complete genome	33283-33312	0	1.0
LS483362_2	2.7\|1455276\|30\|LS483362\|CRISPRCasFinder	1455276-1455305	30	MN530981	Campylobacter phage DA10, complete genome	30556-30585	0	1.0
LS483362_2	2.8\|1455342\|30\|LS483362\|CRISPRCasFinder	1455342-1455371	30	MN530981	Campylobacter phage DA10, complete genome	4834-4863	0	1.0
LS483362_2	2.3\|1455276\|29\|LS483362\|CRT,PILER-CR	1455276-1455304	29	KX229736	Campylobacter phage PC5, complete genome	24059-24087	2	0.931
LS483362_2	2.7\|1455276\|30\|LS483362\|CRISPRCasFinder	1455276-1455305	30	KX229736	Campylobacter phage PC5, complete genome	24059-24088	2	0.933
LS483362_2	2.4\|1455342\|29\|LS483362\|CRT,PILER-CR	1455342-1455370	29	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	223774-223802	6	0.793
LS483362_2	2.1\|1455144\|29\|LS483362\|CRT	1455144-1455172	29	MG676225	Aeromonas phage AhSzw-1, complete genome	109812-109840	7	0.759
LS483362_2	2.2\|1455210\|29\|LS483362\|CRT,PILER-CR	1455210-1455238	29	MG602477	Bacillus phage BCP01, complete genome	154164-154192	7	0.759
LS483362_2	2.2\|1455210\|29\|LS483362\|CRT,PILER-CR	1455210-1455238	29	KX495186	Bacillus phage PK16, complete genome	23958-23986	7	0.759
LS483362_2	2.8\|1455342\|30\|LS483362\|CRISPRCasFinder	1455342-1455371	30	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	223774-223803	7	0.767
LS483362_2	2.5\|1455144\|30\|LS483362\|CRISPRCasFinder	1455144-1455173	30	MG676225	Aeromonas phage AhSzw-1, complete genome	109812-109841	8	0.733
LS483362_2	2.6\|1455210\|30\|LS483362\|CRISPRCasFinder	1455210-1455239	30	MG602477	Bacillus phage BCP01, complete genome	154164-154193	8	0.733
LS483362_2	2.6\|1455210\|30\|LS483362\|CRISPRCasFinder	1455210-1455239	30	KX495186	Bacillus phage PK16, complete genome	23957-23986	8	0.733
LS483362_2	2.8\|1455342\|30\|LS483362\|CRISPRCasFinder	1455342-1455371	30	NC_029073	Geobacillus virus E3, complete genome	3146-3175	8	0.733

1. spacer 2.1|1455144|29|LS483362|CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatggcagtttttaaaagagcttggcggt	CRISPR spacer
tatggcagtttttaaaagagcttggcggt	Protospacer
*****************************

2. spacer 2.2|1455210|29|LS483362|CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tttccaaagtttcattagttgaatttaac	CRISPR spacer
tttccaaagtttcattagttgaatttaac	Protospacer
*****************************

3. spacer 2.3|1455276|29|LS483362|CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ctacaagaatgaggatgatgatattttac	CRISPR spacer
ctacaagaatgaggatgatgatattttac	Protospacer
*****************************

4. spacer 2.4|1455342|29|LS483362|CRT,PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atgagtgtgctaaaaaaaatggacttaaa	CRISPR spacer
atgagtgtgctaaaaaaaatggacttaaa	Protospacer
*****************************

5. spacer 2.5|1455144|30|LS483362|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatggcagtttttaaaagagcttggcggtt	CRISPR spacer
tatggcagtttttaaaagagcttggcggtt	Protospacer
******************************

6. spacer 2.6|1455210|30|LS483362|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tttccaaagtttcattagttgaatttaact	CRISPR spacer
tttccaaagtttcattagttgaatttaact	Protospacer
******************************

7. spacer 2.7|1455276|30|LS483362|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

ctacaagaatgaggatgatgatattttaca	CRISPR spacer
ctacaagaatgaggatgatgatattttaca	Protospacer
******************************

8. spacer 2.8|1455342|30|LS483362|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

atgagtgtgctaaaaaaaatggacttaaat	CRISPR spacer
atgagtgtgctaaaaaaaatggacttaaat	Protospacer
******************************

9. spacer 2.3|1455276|29|LS483362|CRT,PILER-CR matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 2, identity: 0.931

ctacaagaatgaggatgatgatattttac	CRISPR spacer
ctacaagaatgaaaatgatgatattttac	Protospacer
************..***************

10. spacer 2.7|1455276|30|LS483362|CRISPRCasFinder matches to KX229736 (Campylobacter phage PC5, complete genome) position: , mismatch: 2, identity: 0.933

ctacaagaatgaggatgatgatattttaca	CRISPR spacer
ctacaagaatgaaaatgatgatattttaca	Protospacer
************..****************

11. spacer 2.4|1455342|29|LS483362|CRT,PILER-CR matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 6, identity: 0.793

atgagtgtgctaaaaaaaatggacttaaa	CRISPR spacer
aagatatagctaaaaaaaattgacttaaa	Protospacer
* **    ************ ********

12. spacer 2.1|1455144|29|LS483362|CRT matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 7, identity: 0.759

tatggcagtttttaaaagagcttggcggt	CRISPR spacer
gctgccagtttttaaaagagctttacaat	Protospacer
  ** ****************** .*..*

13. spacer 2.2|1455210|29|LS483362|CRT,PILER-CR matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 7, identity: 0.759

tttccaaagtttcattagttgaatttaac	CRISPR spacer
ataataaagtttcattagaagaatttaaa	Protospacer
 *  .*************  ********

14. spacer 2.2|1455210|29|LS483362|CRT,PILER-CR matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 7, identity: 0.759

tttccaaagtttcattagttgaatttaac	CRISPR spacer
ataataaagtttcattagaagaatttaaa	Protospacer
 *  .*************  ********

15. spacer 2.8|1455342|30|LS483362|CRISPRCasFinder matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 7, identity: 0.767

atgagtgtgctaaaaaaaatggacttaaat	CRISPR spacer
aagatatagctaaaaaaaattgacttaaaa	Protospacer
* **    ************ ********

16. spacer 2.5|1455144|30|LS483362|CRISPRCasFinder matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 8, identity: 0.733

tatggcagtttttaaaagagcttggcggtt	CRISPR spacer
gctgccagtttttaaaagagctttacaatg	Protospacer
  ** ****************** .*..*

17. spacer 2.6|1455210|30|LS483362|CRISPRCasFinder matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********

18. spacer 2.6|1455210|30|LS483362|CRISPRCasFinder matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********

19. spacer 2.8|1455342|30|LS483362|CRISPRCasFinder matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 8, identity: 0.733

atgagtgtgctaaaaaaaatggacttaaat	CRISPR spacer
gaaatattgctaaaaaaaatggattaaaat	Protospacer
. .*   ****************.* ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1358018 : 1364654

Tupanvirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF80402.1\|1358018_1358684_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	4.1e-08	26.6
SQF80403.1\|1358671_1359277_-	Phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	2.2e-16	35.0
SQF80404.1\|1359264_1360284_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.7
SQF80405.1\|1360303_1361155_-	methyltransferase family protein	NA	NA	NA	NA
SQF80406.1\|1361173_1362115_-	sugar-nucleotide epimerase-dehydratase	A0A0F7LC08	uncultured_marine_virus	1.0e-73	46.1
SQF80407.1\|1362138_1363179_-	GDP-fucose synthetase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.7e-69	44.4
SQF80408.1\|1363178_1364105_-	Uncharacterised protein	NA	NA	NA	NA
SQF80409.1\|1364108_1364654_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	6.1e-18	32.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage