CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483370	Pseudomonas taetrolens strain NCTC10697 genome assembly, chromosome: 1	0 crisprs	csa3,cas3,DEDDh,DinG,PD-DExK	0	0	1	0

1. LS483370

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	3105290 : 3110500	10	uncultured_Caudovirales_phage(100.0%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>LS483370|3105290:3110500|DBSCAN-SWA
CATGCGCGAACAGGATTACGCTGTTGATCGCAGCTTGCAGGCTGCTGAGCAGCTAGAGGTTAGCCGCGTCCTGCGCAACACTTATGGATTGCTGGCCCTTACTCTCGCGTTCAGCGGTGTGATGGCTTTTGTCGCTCAGCAGATGCGTGTCGGCTATCCCAATATTTTCGTGGTGCTGATCGGTTTTTACGGGCTGTTCTTCTTGACCAACAAGTTGCGTGATTCGGCATGGGGCCTGGTGTCCGCTTTTGCCCTGACCGGTTTCATGGGTTTTCTGTTGGGTCCAATCCTCAACCGCTACCTGGGCATGCAGGGCGGCGCTGAGGTGGTGAGTTCCGCATTCGCGATGACAGCGCTGGTGTTCGGTGGCTTGTCGGCCTATGTATTGATCACCCGCAAGGACATGAGCTTCCTCGGCGGTTTCATCACCGCTGGCTTCTTCGTGTTGCTGGGCGCGGTTCTGGCGAGCTTCTTCTTCCAGATCAGCGGGCTGCAGCTGGCTATCAGCGCCGGTTTCGTTCTGTTCTCTTCGGTCTGCATCTTGTTCCAGACCAGCGCCATCATTCATGGCGGTGAGCGTAACTACATCATGGCGACGATCAGCCTGTATGTATCGATCTACAACCTGTTTGTCAGTTTGCTGCAACTGTTCGGCATCATGAGCCGCGACGACTGATGTACAGCACCTGACAAAAAGCCCGCTTCGGCGGGCTTTTTGTTGTCTGCGGCAAGCATCTTTAGGCATCTGGCTTTATCATTGCGACAGATTTGCTGACAGAGCCCACCATGAAATTTGCCATTGCCCTTTATTCAGCAGCCCATGCGCCCTCTTCCCGCCGCGCCCTGCGATTCGCCGAGGCTGCGCTGGCTGGCGGCCACGAGATTGTCCGGTTGTTCTTCTACCAGGACGGCATCCACAGCGCTTCGAACAACATCGTGGTACCACAGGACGAGCAAGATCTTGCCCGACAATGGGCGACGTTTGTCCGTGAGCATCAGCTCGACGGCGTGGTGTGCATTGCGGCGGCCCTGCGCCGCGGAGTGTTGAATGAAGAGGAAGCCGCGCGTTATCAGCGCCCGGCGGTCAACCTGGAGGCGCCGTGGGAGTTGTCCGGGCTGGGGCAATTGCACGACGCGATTCAATCCGCCGATCGACTGATCTGCTTCGGAGGGCCTTGAAATGCCTAAGTCGCTGTTGATTATCAGCCGTCAGGCACCCTGGGCGGGGCCCGGCGCCAAAGAAGCACTGGATATCGTGCTGGCGGGCGGTGCATTTGACCTGCCAATCGGCCTGATGTTTATGGATGACGGGGTGTTCCAGCTATTACCGGAGCAAAACGCCGCCGCGATTCAGCAAAAAAACCTGACGGCCAATCTGCAAGCCCTCTCCCTGTTCGGGGTGGATGAGCTGTATGCCTGCGCCCACAGCCTGGGCGAGCGCGGTATCTCGCCTGCTGCACTTGCTGTGGATGACGTCCGGGCGCTGTCGACAGAGGATGTCCGCGCACTCATTGACCGTTATGACCAGGTGATTACTCTCTGATGTCGACCTTACACGTTTTGAGTCACTCACCTTTCTCCGACACGCGCCTGGCCAGTTGCTTGCGCCTGCTTGGCGAGAATGACGGCCTGCTGCTCTGCGGCGATGCAGTCTATGCCTTGCAGCCCGACAGCAGCGCGCTTCAATGCCTCGAAAAGCGTATCGGTACGTTCAAGCTGTTTATGCTCGAGGAGGATCTTCTGGCGCGTCATCTTGAATGCCCGCAGTGGGCGACGGTCGTGGATTACCCCGCCTTCGTCGAGTTGTCGATTACTTATGACAAGGTCAACAGCTGGCTATGAATGCACTCATCCTCGACGACAAACAGATCGAGCTGGACAAAGACGGTTACCTGGTCGATCTCAATGACTGGTCCGTTGACGTCGCGCAGGCGCTGGCCGCGCAATCAGGGATTGAGTTGAGCCCAGAGCACTGGGAAATCCTGGAGCTGCTGCGCAGCTTCTATCAGGAGTTCCAGCTGTCTCCCGCCACTCGCCCGCTGATCAAGTACACCGCGCTGAAGCTGGGTGCAGAGAAAGGCAATAGCTTGCACCTCAACCGTCTGTTCAATGGCACTCCCGCCAAGCTCGCCGCCAAGCTGGCGGGACTCCCCAAGCCGACCAATTGCCTATGAACGCTCAAGCTCCGCTCACCCTTGAAACCCCGGCCGAACACCCTTTCGCACAATTCGTGCGCATCCTGGGCAAAGGCAAACGAGGTGCTCGCAACCTGACCCGTGAAGAAGCTCGCGAAGCAATGGGCATGCTGCTTGACGAAAAGACTGAAGACACCCAGCTGGGCGCCTTCCTGATGCTGCTGCGGCACAAGGAAGAAAGCCCTGAAGAAATGGCCGGCTTTACCGAAGCGGTGCGCGAACGTCTAATCGCGCCCACGCTCAACGTCGACATTGACTGGCCTACGTACGCAGGCAAAAAACGCCATCTGCCCTGGTATTTGCTGGCGGCCAAATGCCTGGCACAGAACGGCGTGCGCATTTTCATGCATGGCGGCGGGGCCCACACGGCGGGCCGGCTCTACAGCGAACAGTTACTCAGCGAACTTGCGATCCCGCTGTGCCGCGACTGGCAAAGCGTCGAGGCGGCACTGGACTCAGGCCACCTGGCCTTTATGCCGTTGCAGGACTGGGCCCCGCAGTTACAGCGCATGATCGATCTGCGCAACACCCTGGGCTTGCGCTCACCAATTCATTCGCTGGCGCGGATTCTGAACCCCCTGGGCGCACGCTGCGGCCTGCAAAGCATCTTCCACCCGGGCTACCAAAGCGTGCACCGTGAGGCCAGCGGCCTGCTGGGAGACAACAGCATCGTGGTCAAGGGCGACGGCGGCGAAGTCGAAATCAACCCGGACACCCTGAGCCATCTTTACGGGACTACTGCAGGCGTCAGCTGGGACGAGGAATGGCCTGCGCTGTCTTCACAGCGCCATGTCAAACCGGCATCCCTGGAACCTGGGCATCTCAAGGCCCTGTGGCGTGGCGAGGTCGAAGACAGCTACCCGCAACTGGCGCTTATTTCGACCATGGCCCTGGCCTTGCGTGGGCTGGGTACGCCGCGTGAACAAGCCTTTGAGCTGGCACAGCGCTATTGGGATAACCGCGACAAATCGATTTAACTGATAGTTAGCGCCCACGTTTTGCGCTATTCGTTCGAACCCAGCCCTTTAAACTGAACACCAAAGCACACCTGCCAAGGAGTTCACATGGGACTGTTAATCGATGGGCGCTGGCATGACCAGTGGTACGAAAGCAGTAAAGACGGGGCATTCCAGCGCGAACAGGCGCAGCGCCGTAACTGGGTGACCGTCGACGGCTCACCCGGGCCCACCGGCACCGGCGGCTTTGCGGCCCAGGCCGGACGCTATCACCTGTACGTGTCCCTCGCCTGCCCCTGGGCTCATCGCACCCTCATAACCCGCCGGCTCAAGGGACTTGAGTCGTTGATCGAGGTGTCTGTGGTCAGCTGGCTCATGCTCGAAAACGGCTGGACCTTCGACAAGGCCTTCGGCTCCAGCGGCGACCACCTCGATCCACTGGACTTCCTGCATCAGCGCTATACCCGAGACACTGCCGATTACACCGGCCGCGTCACCGTGCCCGTGCTCTGGGACAAACATCAGCAATGCATCGTCAGCAATGAGTCCGCCGACATCATTCGCATGTTCAACAGCGCGTTCGACGGCCTGACCGGCAACACGCTGGATCTTTATCCGTCAGCGTTGGCCCCACAGGTCGACAGCTGGAATGACAGGATTTATCCGGCGCTGAACAATGGGGTCTACAGGGCTGGCTTCGCCACATCACAATCCGCTTATGAACAGGCATTTGATGATGTTTTTCGCGAGCTTGAAGAGCTGGAACACCATCTGACAGAACATCGCTATCTAGCGGGTGAGTACTTAACTGAAGCGGACGTAAGGCTTTTCACTACCCTTATTCGTTTTGACGCGGTGTACTACAGCCATTTCAAATGCAATGAACGCCGCATTGTCGATTATCCAAACCTCTCCAACTGGCTCAGGGAGCTTTACCAGTGGCCTGGCGTAGCTCAAACCGTGGATATGACTCACATCAAAGGGCATTATTACGCCAGCCACCGCACGATTAACCCGACAGGCATCATTCCTAAAGGTCCGGCGCAGGACTTCAACGCGGCCCATGATCGCGCCCGTCTGGCCGGCAATGGCATCTGGCAGCAGTAACCGCGCAAACAGTGCTGGCATTCAGAGCTAGCCGTACGGGCTGCTGGCCAGTAGCATCGCCTGCACTGTTTACGAGAACACCTCATGCTTATTCCTTACGACCAGCTTGAACCCGAAACCCTCACCCGCCTGATCGAGGACTTCGTGAGCCGCGATGGCACTGACAACGGCGATGACACGCCTCAAGAAACCCGCGTGCTGCGGGTTCGGCACGCGCTGAGCAAAGGCCAGGCGGTGATTTTCTTCGACCTCGAAAGCCAGCAATGCCAGTTGATGCCCAAGCATGCGGTACCCAAGGAGTTCTTTGATTAGCGGGTGCTCAAGGACGAGTCCGGCACGCCTTTAGCCTCCTCATTTTTGATCCGCTCGTAGATTTCCGTTCGGTGCACACCTACATCTCGAGGGGCTTCGACGCCCAGGCGCACGTGGGCACCACTGACGCCAATGATGCGTACCTTAATGTTCTGGTCGATGGAAATATATTCGTCGATGGCACGGCTCAATATCAACATGGCTCTCATCCTTTTCGGTGGAGCCTCAAAGACTGCATCGCATGATCGAGCGCTTCAATCCCTACAAGAGAATTCAGTAGCGTCCTACACCTACCAGAGAATCTCCCTTCAGTTACTCGAAAAGCGTGGCCCCAGCAAAATGACGGTTGCGCCCAGCACGCATAAGCCGACCCCGACCCAGTCAGAGCTCAGTGGCCGAATACGCTCAACGACCGCCAGCCAGGCAATGGACGCGATGATGTAGGTGCCGCCATAGGCTGCATAGGCACGCCCGGCATAAGTGGCTTCAACCTTGGTCAGGAGCAAGGCAAACGCTGCCAGGCTCAATACCGCCGGCACCACCCACCATGCACTTTTGCCCTGGCGCAACCACATCCAGAACCCATAGCAGCCGGCTATTTCAAACACCGCAGCCAAAAAAAACCAAACATAATTAAGCAT

Protein sequences of DBSCAN-SWA_1

>LS483370|3105290:3110500|3107127_3107463_+|SQF87102.1|DBSCAN-SWA
MNALILDDKQIELDKDGYLVDLNDWSVDVAQALAAQSGIELSPEHWEILELLRSFYQEFQLSPATRPLIKYTALKLGAEKGNSLHLNRLFNGTPAKLAAKLAGLPKPTNCL
>LS483370|3105290:3110500|3105290_3105965_+|SQF87098.1|DBSCAN-SWA
MREQDYAVDRSLQAAEQLEVSRVLRNTYGLLALTLAFSGVMAFVAQQMRVGYPNIFVVLIGFYGLFFLTNKLRDSAWGLVSAFALTGFMGFLLGPILNRYLGMQGGAEVVSSAFAMTALVFGGLSAYVLITRKDMSFLGGFITAGFFVLLGAVLASFFFQISGLQLAISAGFVLFSSVCILFQTSAIIHGGERNYIMATISLYVSIYNLFVSLLQLFGIMSRDD
>LS483370|3105290:3110500|3109631_3109859_+|SQF87105.1|DBSCAN-SWA
MLIPYDQLEPETLTRLIEDFVSRDGTDNGDDTPQETRVLRVRHALSKGQAVIFFDLESQQCQLMPKHAVPKEFFD
>LS483370|3105290:3110500|3106075_3106468_+|SQF87099.1|DBSCAN-SWA
MKFAIALYSAAHAPSSRRALRFAEAALAGGHEIVRLFFYQDGIHSASNNIVVPQDEQDLARQWATFVREHQLDGVVCIAAALRRGVLNEEEAARYQRPAVNLEAPWELSGLGQLHDAIQSADRLICFGGP
>LS483370|3105290:3110500|3106831_3107131_+|SQF87101.1|DBSCAN-SWA
MSTLHVLSHSPFSDTRLASCLRLLGENDGLLLCGDAVYALQPDSSALQCLEKRIGTFKLFMLEEDLLARHLECPQWATVVDYPAFVELSITYDKVNSWL
>LS483370|3105290:3110500|3108548_3109547_+|SQF87104.1|DBSCAN-SWA
MGLLIDGRWHDQWYESSKDGAFQREQAQRRNWVTVDGSPGPTGTGGFAAQAGRYHLYVSLACPWAHRTLITRRLKGLESLIEVSVVSWLMLENGWTFDKAFGSSGDHLDPLDFLHQRYTRDTADYTGRVTVPVLWDKHQQCIVSNESADIIRMFNSAFDGLTGNTLDLYPSALAPQVDSWNDRIYPALNNGVYRAGFATSQSAYEQAFDDVFRELEELEHHLTEHRYLAGEYLTEADVRLFTTLIRFDAVYYSHFKCNERRIVDYPNLSNWLRELYQWPGVAQTVDMTHIKGHYYASHRTINPTGIIPKGPAQDFNAAHDRARLAGNGIWQQ
>LS483370|3105290:3110500|3106469_3106832_+|SQF87100.1|tRNA|DBSCAN-SWA
MPKSLLIISRQAPWAGPGAKEALDIVLAGGAFDLPIGLMFMDDGVFQLLPEQNAAAIQQKNLTANLQALSLFGVDELYACAHSLGERGISPAALAVDDVRALSTEDVRALIDRYDQVITL
>LS483370|3105290:3110500|3109855_3110059_-|SQF87106.1|DBSCAN-SWA
MLILSRAIDEYISIDQNIKVRIIGVSGAHVRLGVEAPRDVGVHRTEIYERIKNEEAKGVPDSSLSTR
>LS483370|3105290:3110500|3107459_3108461_+|SQF87103.1|DBSCAN-SWA
MNAQAPLTLETPAEHPFAQFVRILGKGKRGARNLTREEAREAMGMLLDEKTEDTQLGAFLMLLRHKEESPEEMAGFTEAVRERLIAPTLNVDIDWPTYAGKKRHLPWYLLAAKCLAQNGVRIFMHGGGAHTAGRLYSEQLLSELAIPLCRDWQSVEAALDSGHLAFMPLQDWAPQLQRMIDLRNTLGLRSPIHSLARILNPLGARCGLQSIFHPGYQSVHREASGLLGDNSIVVKGDGGEVEINPDTLSHLYGTTAGVSWDEEWPALSSQRHVKPASLEPGHLKALWRGEVEDSYPQLALISTMALALRGLGTPREQAFELAQRYWDNRDKSI
>LS483370|3105290:3110500|3110167_3110500_-|SQF87107.1|DBSCAN-SWA
MLNYVWFFLAAVFEIAGCYGFWMWLRQGKSAWWVVPAVLSLAAFALLLTKVEATYAGRAYAAYGGTYIIASIAWLAVVERIRPLSSDWVGVGLCVLGATVILLGPRFSSN

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQF87098.1|3105290_3105965_+	membrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.6e-108	94.6
SQF87099.1|3106075_3106468_+	sulfur transfer complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.0e-62	89.2
SQF87100.1|3106469_3106832_+|tRNA	tRNA 2-thiouridine synthesizing protein C	A0A2H4J8C0	uncultured_Caudovirales_phage	1.1e-50	83.3
SQF87101.1|3106831_3107131_+	DsrH family protein	A0A2H4JG28	uncultured_Caudovirales_phage	4.0e-40	79.8
SQF87102.1|3107127_3107463_+	DsrC-like protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.8e-49	86.5
SQF87103.1|3107459_3108461_+	glycosyl transferase	A0A2H4JBY5	uncultured_Caudovirales_phage	1.0e-183	92.8
SQF87104.1|3108548_3109547_+	glutathione S-transferase, C-terminal domain protein	NA	NA	NA	NA
SQF87105.1|3109631_3109859_+	Uncharacterised protein family (UPF0270)	A0A2H4J8A7	uncultured_Caudovirales_phage	1.6e-36	98.7
SQF87106.1|3109855_3110059_-	carbon storage regulator	A0A2H4J8C6	uncultured_Caudovirales_phage	3.3e-09	50.7
SQF87107.1|3110167_3110500_-	membrane protein PFL	A0A2H4JF35	uncultured_Caudovirales_phage	2.0e-48	85.3