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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS483374 Streptococcus pneumoniae strain NCTC7466 genome assembly, chromosome: 1 2 crisprs DEDDh,PrimPol,cas3,DinG,RT 1 1 17 1

Results visualization

1. LS483374
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483374_1 97129-97224 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483374_3 1698526-1698643 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 LS483374.1 40191-40218 0 1.0
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 LS483374.1 966395-966422 0 1.0
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 LS483374.1 1656868-1656895 0 1.0

1. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to position: 40191-40218, mismatch: 0, identity: 1.0

tttcaacccactacagttgacaaagagc	CRISPR spacer
tttcaacccactacagttgacaaagagc	Protospacer
****************************

2. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to position: 966395-966422, mismatch: 0, identity: 1.0

tttcaacccactacagttgacaaagagc	CRISPR spacer
tttcaacccactacagttgacaaagagc	Protospacer
****************************

3. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to position: 1656868-1656895, mismatch: 0, identity: 1.0

tttcaacccactacagttgacaaagagc	CRISPR spacer
tttcaacccactacagttgacaaagagc	Protospacer
****************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 KY065475 Streptococcus phage IPP35, complete genome 21704-21731 0 1.0
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 MK448817 Streptococcus phage Javan59, complete genome 41452-41479 2 0.929
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 MK448405 Streptococcus satellite phage Javan293, complete genome 10770-10797 3 0.893
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 MH937476 Streptococcus phage CHPC933, partial genome 26091-26118 3 0.893
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NC_012642 Streptococcus parasanguinis plasmid pFW213, complete sequence 1560-1587 3 0.893
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP015284 Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence 83115-83142 4 0.857
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP016699 Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence 36883-36910 4 0.857
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP015284 Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence 55243-55270 5 0.821
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 MN480762 Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence 10598-10625 5 0.821
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 MN480762 Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence 168253-168280 5 0.821
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP020429 Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence 118713-118740 5 0.821
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP020429 Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence 98135-98162 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NC_019430 Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence 14620-14647 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP018832 Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence 180660-180687 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP040906 Enterococcus faecium strain FB-1 plasmid punnamed, complete sequence 113824-113851 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP027518 Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence 150478-150505 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP027498 Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence 174624-174651 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP016744 Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2C, complete sequence 19046-19073 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 MT074686 Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence 73336-73363 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP025756 Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence 63468-63495 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP031539 Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107A, complete sequence 22007-22034 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_LR135476 Enterococcus faecium isolate E8423 plasmid 2 151354-151381 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP016738 Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3B, complete sequence 19022-19049 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NC_017493 Lactococcus lactis subsp. cremoris A76 plasmid pQA549, complete sequence 16777-16804 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NC_021987 Enterococcus faecium Aus0085 plasmid p1, complete sequence 76654-76681 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_LR135358 Enterococcus faecium isolate E7948 plasmid 2 169632-169659 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP044265 Enterococcus faecium strain V1836 plasmid pHVH-V1836-1, complete sequence 110148-110175 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP016708 Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109B, complete sequence 14623-14650 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NC_017478 Lactococcus lactis plasmid pSK11L, complete sequence 19224-19251 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP020439 Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence 76001-76028 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP018188 Streptococcus salivarius strain ICDC2 plasmid, complete sequence 47121-47148 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_AP022342 Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence 223062-223089 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NC_008506 Lactococcus lactis subsp. cremoris SK11 plasmid 4, complete sequence 44473-44500 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP016733 Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4E, complete sequence 19069-19096 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_LR135308 Enterococcus faecium isolate E7240 plasmid 2 140234-140261 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP018827 Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence 180660-180687 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_MF150536 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03P plasmid pLd8, complete sequence 19158-19185 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP041262 Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R1, complete sequence 55029-55056 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP043524 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_05, complete sequence 28578-28605 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP013995 Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence 80441-80468 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP014450 Enterococcus faecium strain ATCC 700221 plasmid unnamed1, complete sequence 29008-29035 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP027502 Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence 55406-55433 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP016715 Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence 20508-20535 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP040803 Streptococcus salivarius strain LAB813 plasmid pSAL813, complete sequence 65781-65808 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_LR135279 Enterococcus faecium isolate E6975 plasmid 2 44791-44818 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_LR135236 Enterococcus faecium isolate E7067 plasmid 2 36603-36630 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_AP018502 Lactococcus lactis subsp. cremoris strain C4 plasmid pC43, complete sequence 13248-13275 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP041256 Enterococcus faecium strain 515 plasmid p26, complete sequence 10619-10646 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_LR135220 Enterococcus faecium isolate E7040 plasmid 2 36627-36654 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_LR134106 Enterococcus faecium isolate E6043 plasmid 2 36627-36654 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP023514 Enterococcus sp. FDAARGOS_375 plasmid unnamed1, complete sequence 139819-139846 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP040876 Enterococcus faecium strain DB-1 plasmid punnamed2 74007-74034 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP019993 Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence 46625-46652 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP035655 Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence 78878-78905 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP035661 Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence 72511-72538 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP035667 Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence 72513-72540 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP035649 Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence 78881-78908 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP051519 Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence 39090-39117 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP041271 Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S1, complete sequence 55028-55055 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP040237 Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence 55030-55057 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NC_020208 Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence 121228-121255 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP034948 Enterococcus faecium strain NM213 plasmid unnamed5, complete sequence 64834-64861 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP012461 Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence 55439-55466 6 0.786
LS483374_3 3.1|1698571|28|LS483374|CRISPRCasFinder 1698571-1698598 28 NZ_CP016687 Lactococcus lactis subsp. cremoris strain 158 plasmid p158C, complete sequence 17331-17358 6 0.786

1. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to KY065475 (Streptococcus phage IPP35, complete genome) position: , mismatch: 0, identity: 1.0

tttcaacccactacagttgacaaagagc	CRISPR spacer
tttcaacccactacagttgacaaagagc	Protospacer
****************************

2. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to MK448817 (Streptococcus phage Javan59, complete genome) position: , mismatch: 2, identity: 0.929

tttcaacccactacagttgacaaagagc	CRISPR spacer
catcaacccactacagttgacaaagagc	Protospacer
. **************************

3. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to MK448405 (Streptococcus satellite phage Javan293, complete genome) position: , mismatch: 3, identity: 0.893

tttcaacccactacagttgacaaagagc	CRISPR spacer
catctacccactacagttgacaaagagc	Protospacer
. ** ***********************

4. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to MH937476 (Streptococcus phage CHPC933, partial genome) position: , mismatch: 3, identity: 0.893

tttcaacccactacagttgacaaagagc	CRISPR spacer
catctacccactacagttgacaaagagc	Protospacer
. ** ***********************

5. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NC_012642 (Streptococcus parasanguinis plasmid pFW213, complete sequence) position: , mismatch: 3, identity: 0.893

tttcaacccactacagttgacaaagagc	CRISPR spacer
tgtccacccactacagttgacaatgagc	Protospacer
* ** ****************** ****

6. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP015284 (Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence) position: , mismatch: 4, identity: 0.857

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacaaagagc	Protospacer
*. . ***********************

7. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 4, identity: 0.857

tttcaacccactacagttgacaaagagc	CRISPR spacer
catctacccactacggttgacaaagagc	Protospacer
. ** *********.*************

8. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP015284 (Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence) position: , mismatch: 5, identity: 0.821

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacaaagaac	Protospacer
*. . *********************.*

9. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 5, identity: 0.821

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacagagagc	Protospacer
*. . *****************.*****

10. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 5, identity: 0.821

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacagagagc	Protospacer
*. . *****************.*****

11. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP020429 (Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.821

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcatcacccactacagttgacaaggagc	Protospacer
*. . ******************.****

12. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP020429 (Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacaaggatc	Protospacer
*. . ******************.** *

13. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NC_019430 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

14. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP018832 (Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

15. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP040906 (Enterococcus faecium strain FB-1 plasmid punnamed, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

16. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP027518 (Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

17. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP027498 (Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

18. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP016744 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2C, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

19. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to MT074686 (Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

20. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP025756 (Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

21. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP031539 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107A, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

22. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_LR135476 (Enterococcus faecium isolate E8423 plasmid 2) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

23. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP016738 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3B, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

24. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NC_017493 (Lactococcus lactis subsp. cremoris A76 plasmid pQA549, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

25. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NC_021987 (Enterococcus faecium Aus0085 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

26. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_LR135358 (Enterococcus faecium isolate E7948 plasmid 2) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

27. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP044265 (Enterococcus faecium strain V1836 plasmid pHVH-V1836-1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

28. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP016708 (Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109B, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

29. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NC_017478 (Lactococcus lactis plasmid pSK11L, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

30. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacaattgacatagagc	Protospacer
*. . **********.****** *****

31. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP018188 (Streptococcus salivarius strain ICDC2 plasmid, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatcgagc	Protospacer
*. . *****************  ****

32. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_AP022342 (Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

33. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NC_008506 (Lactococcus lactis subsp. cremoris SK11 plasmid 4, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

34. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP016733 (Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4E, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcatcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

35. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_LR135308 (Enterococcus faecium isolate E7240 plasmid 2) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

36. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP018827 (Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

37. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_MF150536 (Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03P plasmid pLd8, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

38. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP041262 (Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

39. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP043524 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_05, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

40. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP013995 (Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

41. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP014450 (Enterococcus faecium strain ATCC 700221 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

42. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP027502 (Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

43. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP016715 (Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

44. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP040803 (Streptococcus salivarius strain LAB813 plasmid pSAL813, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcactcactacagttgactaagagc	Protospacer
*. . **.************* ******

45. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

46. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_LR135236 (Enterococcus faecium isolate E7067 plasmid 2) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

47. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_AP018502 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC43, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

48. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP041256 (Enterococcus faecium strain 515 plasmid p26, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

49. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_LR135220 (Enterococcus faecium isolate E7040 plasmid 2) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

50. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_LR134106 (Enterococcus faecium isolate E6043 plasmid 2) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

51. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP023514 (Enterococcus sp. FDAARGOS_375 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

52. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP040876 (Enterococcus faecium strain DB-1 plasmid punnamed2) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

53. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP019993 (Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

54. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP035655 (Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

55. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP035661 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

56. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP035667 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

57. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP035649 (Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

58. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP051519 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

59. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP041271 (Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

60. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP040237 (Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

61. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NC_020208 (Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

62. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP034948 (Enterococcus faecium strain NM213 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

63. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP012461 (Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

64. spacer 3.1|1698571|28|LS483374|CRISPRCasFinder matches to NZ_CP016687 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158C, complete sequence) position: , mismatch: 6, identity: 0.786

tttcaacccactacagttgacaaagagc	CRISPR spacer
tcgtcacccactacagttgacatagacc	Protospacer
*. . ***************** *** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 4185 : 53357 44 Streptococcus_phage(22.22%) bacteriocin,transposase,tRNA NA
DBSCAN-SWA_2 105697 : 141345 37 Streptococcus_phage(60.0%) bacteriocin,transposase,tRNA NA
DBSCAN-SWA_3 289398 : 332895 46 Streptococcus_phage(33.33%) protease,transposase NA
DBSCAN-SWA_4 347718 : 381471 33 Macacine_betaherpesvirus(33.33%) transposase,holin,tRNA NA
DBSCAN-SWA_5 424232 : 485904 58 Bacillus_phage(20.0%) bacteriocin,protease,transposase,integrase attL 448628:448644|attR 479760:479776
DBSCAN-SWA_6 570404 : 620520 39 Staphylococcus_phage(28.57%) holin,bacteriocin,protease,transposase,tRNA NA
DBSCAN-SWA_7 698422 : 812905 108 Streptococcus_phage(12.9%) protease,transposase,tRNA NA
DBSCAN-SWA_8 825068 : 871442 49 Streptococcus_phage(50.0%) protease,transposase,holin,tRNA NA
DBSCAN-SWA_9 894547 : 966389 55 Streptococcus_phage(46.15%) protease,transposase NA
DBSCAN-SWA_10 1094171 : 1161652 60 Bacillus_phage(20.0%) bacteriocin,protease,holin,tRNA NA
DBSCAN-SWA_11 1186506 : 1231450 47 Bacillus_phage(62.5%) bacteriocin,protease,transposase,holin NA
DBSCAN-SWA_12 1299118 : 1333914 42 Streptococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_13 1414602 : 1421356 9 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_14 1655544 : 1679882 28 Streptococcus_phage(33.33%) transposase,holin,integrase attL 1663527:1663543|attR 1672752:1672768
DBSCAN-SWA_15 1698127 : 1750197 52 Streptococcus_phage(45.45%) bacteriocin,protease,transposase,tRNA NA
DBSCAN-SWA_16 1877040 : 1937156 60 Bacillus_phage(27.27%) protease,transposase,holin,tRNA NA
DBSCAN-SWA_17 1995501 : 2032984 36 Streptococcus_phage(50.0%) protease,transposase,holin NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
LS483374.1|SQG02705.1|1659226_1659991_-|lipoprotein 1659226_1659991_- 254 aa aa NA NA NA 1655544-1679882 yes