CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483369	Neisseria cinerea strain NCTC10294 genome assembly, chromosome: 1	1 crisprs	cas2,cas1,cas9,cas3,DEDDh,DinG	0	5	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483369_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483369_1

106122-106619

TypeII

Consensus_repeat	Method
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	PILER-CR
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CRISPRCasFinder
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CRT

7 spacers

cas2,cas1,cas9

The CRISPR arrays of LS483369_1

>merge|LS483369|1|106122-106619|PILER-CR,CRISPRCasFinder,CRT
GTTGTAGCTCCCATTCTCATTTTGCAGTGCTACAATGTACCGGAGCCGCGTTTGCCGACACGGATAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACTTTCTAATTTACAACGCCTCCACCTATTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAATAATGACATCGCGTTTAATCTCTTCTTCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCGCATGGTCGAATGGAATGCATGCGGAGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGGCGTGAACGGTGCTGATAAGGCTGTTGCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATTGTTTTAATTGCCTTTAAAAGGACGATAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTCTATCTCTTGGGGTGTGAAGTGTTGTCCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT

>LS483369|1|1|106122-106619|PILER-CR
GTTGTAGCTCCCATTCTCATTTTGCAGTGCTACAAT	GTACCGGAGCCGCGTTTGCCGACACGGATA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ACTTTCTAATTTACAACGCCTCCACCTATT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	AATAATGACATCGCGTTTAATCTCTTCTTC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CCGCATGGTCGAATGGAATGCATGCGGAGA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GGCGTGAACGGTGCTGATAAGGCTGTTGCA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATTGTTTTAATTGCCTTTAAAAGGACGATA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTCTATCTCTTGGGGTGTGAAGTGTTGTCC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT

>LS483369|1|1|106122-106619|CRISPRCasFinder
GTTGTAGCTCCCATTCTCATTTTGCAGTGCTACAAT	GTACCGGAGCCGCGTTTGCCGACACGGATA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ACTTTCTAATTTACAACGCCTCCACCTATT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	AATAATGACATCGCGTTTAATCTCTTCTTC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CCGCATGGTCGAATGGAATGCATGCGGAGA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GGCGTGAACGGTGCTGATAAGGCTGTTGCA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATTGTTTTAATTGCCTTTAAAAGGACGATA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTCTATCTCTTGGGGTGTGAAGTGTTGTCC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT

>LS483369|1|1|106122-106619|CRT
GTTGTAGCTCCCATTCTCATTTTGCAGTGCTACAAT	GTACCGGAGCCGCGTTTGCCGACACGGATA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ACTTTCTAATTTACAACGCCTCCACCTATT
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	AATAATGACATCGCGTTTAATCTCTTCTTC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	CCGCATGGTCGAATGGAATGCATGCGGAGA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	GGCGTGAACGGTGCTGATAAGGCTGTTGCA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	ATTGTTTTAATTGCCTTTAAAAGGACGATA
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	TTCTATCTCTTGGGGTGTGAAGTGTTGTCC
GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483369.1\|SQF82707.1\|115701_115935_+\|putative-RNA-binding-protein	unknown	unknown	gnl\|CDD\|225303
LS483369.1\|SQF82692.1\|93944_94622_-\|ompA-family-protein	unknown	unknown	gnl\|CDD\|182507
LS483369.1\|SQF82699.1\|101881_102541_-\|phosphatase	unknown	unknown	gnl\|CDD\|319835
LS483369.1\|SQF82695.1\|96144_97101_+\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	unknown	unknown	gnl\|CDD\|235536
LS483369.1\|SQF82702.1\|106682_106991_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LS483369.1\|SQF82711.1\|118484_120395_-\|pilin-glycosylation-protein	unknown	unknown	gnl\|CDD\|224011
LS483369.1\|SQF82708.1\|115912_116116_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483369.1\|SQF82700.1\|102700_104815_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227114
LS483369.1\|SQF82709.1\|116247_117084_+\|putative-metal-dependent-phosphoesterase	unknown	unknown	gnl\|CDD\|223686
LS483369.1\|SQF82701.1\|105002_105812_+\|esterase	unknown	unknown	gnl\|CDD\|225375
LS483369.1\|SQF82703.1\|107001_107916_-\|putative-DNA-repair-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
LS483369.1\|SQF82696.1\|97242_100032_+\|isoleucyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235588
LS483369.1\|SQF82704.1\|107981_111227_-\|putative-CRISPR-associated-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LS483369.1\|SQF82697.1\|100302_100797_+\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739
LS483369.1\|SQF82698.1\|100826_101795_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
LS483369.1\|SQF82694.1\|95705_96080_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483369.1\|SQF82710.1\|117136_118429_-\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|226485
LS483369.1\|SQF82705.1\|111505_115009_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235554
LS483369.1\|SQF82693.1\|94696_95578_-\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|377734
LS483369.1\|SQF82706.1\|115157_115397_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226646

Protein	Function_ID	Function_description	E-value
LS483369.1\|SQF82707.1\|115701_115935_+\|putative-RNA-binding-protein	gnl\|CDD\|225303	COG2501, COG2501, S4-like RNA binding protein [Replication, recombination, and repair].	8.61181e-29
LS483369.1\|SQF82692.1\|93944_94622_-\|ompA-family-protein	gnl\|CDD\|182507	PRK10510, PRK10510, OmpA family lipoprotein.	3.85622e-51
LS483369.1\|SQF82699.1\|101881_102541_-\|phosphatase	gnl\|CDD\|319835	cd07533, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans HAD-superfamily hydrolase, subfamily IA, variant 1. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.06414e-93
LS483369.1\|SQF82695.1\|96144_97101_+\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	7.15393e-132
LS483369.1\|SQF82702.1\|106682_106991_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.83088e-58
LS483369.1\|SQF82711.1\|118484_120395_-\|pilin-glycosylation-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
LS483369.1\|SQF82700.1\|102700_104815_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	0
LS483369.1\|SQF82709.1\|116247_117084_+\|putative-metal-dependent-phosphoesterase	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	9.83026e-85
LS483369.1\|SQF82701.1\|105002_105812_+\|esterase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	8.71074e-92
LS483369.1\|SQF82703.1\|107001_107916_-\|putative-DNA-repair-protein	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.62751e-140
LS483369.1\|SQF82696.1\|97242_100032_+\|isoleucyl-tRNA-synthetase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
LS483369.1\|SQF82704.1\|107981_111227_-\|putative-CRISPR-associated-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LS483369.1\|SQF82697.1\|100302_100797_+\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	8.40745e-62
LS483369.1\|SQF82698.1\|100826_101795_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
LS483369.1\|SQF82710.1\|117136_118429_-\|valine--pyruvate-transaminase	gnl\|CDD\|226485	COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism].	0
LS483369.1\|SQF82705.1\|111505_115009_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
LS483369.1\|SQF82693.1\|94696_95578_-\|Predicted-membrane-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	1.41427e-31
LS483369.1\|SQF82706.1\|115157_115397_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	1.28664e-20

>LS483369.1|SQF82701.1|105002_105812_+|esterase
MKTTYTTQAARLPQAFETEISSAGTGRTYRIQTAAIGEMPPEGYPVLFVLDGEAFFPALFNIMQSLMNNPVTRSRAPCLIVGVGYAGGGVRDLAQRAADYTPPLRSNASEDEQRQFGQADRFAEFIDSELTAFLESKYRLDKNETAVFGHSFGALFGLYSLLSHRRFRRHWLVSPSIWWHNRRILDFMPSENRLNGIDVCLNIGALERRSDCKRREERDMAGLSERMVAELDKHGAAVFFREYPNANHGNVPFHSLTDCVEYLRKAWQR
>LS483369.1|SQF82700.1|102700_104815_+|TonB-dependent-siderophore-receptor
MSVFRINMTAAAVLTVLSSSAFAAQTEGLETVHIKGQRSYNAIATEKNGDYSSFAATVGTKIPASLREIPQSVSIITNQQVKDRNVDTFDQLARKTPGLRVLSNDDGRSSVYARGYEYSEYNIDGLPAQMQSINGTLPNLFAFDRVEVMRGPSGLFDSSGEMGGIVNLVRKRPTKAFQGHAAAGFGTHKQYKAEADVSGSLNADGSVRGRVMAQTVGASPRPAEKNNHHETFYAAADWDINPDTVLGAGYLYQQRHLAPYNGLPADADGKLPSLPQHAFVGADWNKFKMHSHDVFADLKHYFGNGGYGKVGMRYSDRKADSNYTFAGSSLDKAGKAAAAGLGTDIKQKAFAVDASYSRPFALGNTANEFVIGADYNRFRSTNEQGRSTLSKSVALDGFRALPYNGILQNARAGNKGFNHSVTEENLDETGLYAKTVFRPLEGLSLIAGGRVGHHKIESGDGKTLHKASKTKFTSYAGAVYDIDGSNSLYASASQLYTPQTNLDADGKLLKPRQGNQFEVGYKGSHMDDRLNTRVSFYRMKDKNAAAPLNPKDRNTRYAALGERVMEGVETEISGAITPKWQIHAGYSYLHSQIKTASNSRDDGIFLLMPKHSANLWTTYQVTPELTIGGGVNAMSGITSSAGMHAGGYATFDAMAAYRFTPKLKLQVNADNISNRRYYARVGGTNTFNIPGSERSLTANLRYSF
>LS483369.1|SQF82699.1|101881_102541_-|phosphatase
MTPPKLIIFDWDGTLADTTQPIIDTMRRSFAECGFPMPETDRVRSLIGYSLPEIIRDLLEMPSETAVADIARTYSAHYLNPNNRNMSLFPQALPCLDKLKAQGYWLAVATGKGRAGLDNAISQTATGGYWLATACAGEYPSKPSPEMVFGLCGELGLDPKEALVVGDTAHDLHMAANAGAAAVGVATGAHSREQLLSAPHLAVLDDLSELPGFLAQHYA
>LS483369.1|SQF82698.1|100826_101795_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MNGKTIILANPRGFCAGVDRAISIVERALEEFGAPIYVRHEVVHNKFVVDNLREKGAVFVDDLAEVPQGATLIYSAHGVSKAVQQEAAERGFRVFDATCPLVTKVHKEVARLDALDCEIIMIGHKGHVEVEGTMGQLEPGKMLLVETVGDVAKLEVKNPDKLAYVSQTTLSVDETKDIIAALNARFPNIRNPRKEDICYATTNRQTAVKELAEQCDIVIVVGSPNSSNSNRLREVAALRGIDAYMVDNAGYLQRAWFEGKHKVGVTAGASAPEVLVQEVLATIRGWGHETVREGEGAEESIVFVLPKELRREGETKPDLCKR
>LS483369.1|SQF82697.1|100302_100797_+|lipoprotein-signal-peptidase
MSSSVSSKTRYWVLALAAIVLDQWSKWAVLSSFQYQERVNVIPSFFDLTLVYNPGAAFSFLADQGGWQKYFFLLLAVAVSIYLVRAILRDEFAALGKTGAAMIIGGALGNVIDRLIHGHVVDFLLFYWQDWFYPAFNIADSFICVGAVLAVLDNIVHRTDSKKT
>LS483369.1|SQF82696.1|97242_100032_+|isoleucyl-tRNA-synthetase
MTDYSKTVNLLESPFPMRGNLAKREPAWLKSWYEQKRYQKLREIAKGRPKFILHDGPPYANGDIHIGHAVNKILKDIIIRSKTQAGFDAPYVPGWDCHGLPIEVMVEKLHGKDMPKARFRELCREYAAEQIARQKKDFIRLGVLGDWDNPYLTMDFKTEADTVRMLGEIYKSGYLYRGAKPVQFCLDCGSSLAEAEVEYKDKVSPAIDVGYPFKDTAALAAAFGLAGIEGKAFAVIWTTTPWTLPASQAVSAGADVVYQLIDTPKGKLVLAKDLAEDALKRYGFSDGIAILAETTGDKLENLHMNHPFLERDIPMLNGDHVTTDAGTGLVHTAPAHGLEDYTVCNKYGIELYNPVNAEGKYISETPRVAGMRVWEANPVILQWLEETGNLLASSKIEHSYAHCWRHKTPLIYRATGQWFVGMDKAGADGKTLRDKAIKAVDDTEFFPSWGRARLEAMIEGRPDWVVSRQRYWGTPMTFFVHKETGELHPNSAELLEKVAQRIEEKGIEAWFSLDKSELLSAEDCENYDKLSDTMDVWFDSGSTHYSVLKQREELDWPADLYLEGSDQHRGWFQSSMLTGCASSMGRAPYKQLLTHGFVVDQNGRKMSKSIGNVVAPQEVYNEFGADILRLWAASTDYSGELAISKEILKRVTESYRRIRNTLSFLFANLSDFDPFEHTVPQADMVEIDRYALVLARQLQERLAGDFYPRYAFHFAVKDIVAFCSEDLGAFYLDILKDRLYTTQADSHARRSAQTALYHITRSLVLLIAPILCFTGEEAWDIIGGGEEDSVLFHTWHEFPTINEKAEAELVKKWTAIREAREAVTAAIEPLRADKTVGSSLQAEAEITAPEEIADYLNALGEELRFALLVSKAEVKVGDELAVAAKASDGEKCERCWHYTHDVGAVAGYETVCKRCAGNVGGEGETRHYA
>LS483369.1|SQF82695.1|96144_97101_+|bifunctional-riboflavin-kinase/FMN-adenylyltransferase
MTACFTTYPNATMRIRLGRHDAPDFPQGAAVTIGNFDGVHLGHKHILQKLRLEADTRGLPVVAVVFEPQPKEFFALRTGRMPPCRISPLRTKLELLEGTGCVDAVWVLRFDQNFSEISAQGFIDHLLRQTLNTRYLLVGDDFRFGAGREGCFELLAQQPDMQTERTPSVIVEDIRTSSTAVRQALSDGNLAYAKKLLGHDYVLGGRVVHGRKLGRTLNAPTANIRLPGHRYALGGVFVVEADGAFGTRRGVASFGFNPTVDSGCSQKLEVHLFDFQGDLYGQRLNVRFLHKLRDEEKFDGMEELKRQIEADMEAAKCW
>LS483369.1|SQF82694.1|95705_96080_+|Uncharacterised-protein
MRRYIAAAAAILILTACATPEQQAAYRQAQQRYEQDLQVALAAQCDREAAQLIRRQFDSGYAPMPDAERQIFKTRYTEKLSDPMFQACYKMAWQNYISQQQLKEVRLSRYYDDWGYPFYRPWWW
>LS483369.1|SQF82693.1|94696_95578_-|Predicted-membrane-protein
MNESDRHAKHARRSRHHIPPFWQADRPYLHEHHISDARFRRLGYIMSLLAGAINAGGFFAFARYTSHVTGSMSLLADMVYLKQWTAAAVAMVSVLCFIAGAAHSGWVILWTQQMRFRGSYGLSMWLEALYLLIFGLFGITALQWDADGGLVFPSLALFLLCFIMGMHNTVMTLLSGGAIRSTHMTGTATDLGIEISRALYYSKTHHPRLPHVRVNKPKMWLLSGMMQAFLLGGIIGAWGYHKIGHHFALPVSAVLLILGAGSVGYDVKVRFLWIWRKFRRKYRQTGVVSGKIG
>LS483369.1|SQF82692.1|93944_94622_-|ompA-family-protein
MTFFKPFTVVLTASALALSGCVTDPSTVRQSADKTALYGLGGAAVCGIMGALTHGGKGARNSALVCGALGAGIGGYMDYQEQRLRQSLAGTQVQVQRQGNQIKLVMPENVTFATGSAVLSDNAQFALNTAAQTLVQYPDTTLTINGHTDNTGSDAINNPLSQHRAQTVAYYLQSRGVAASRLAVYGYGSHMPAASNATAEGRAQNRRVEILINPDQRAVNAAQQM
>LS483369.1|SQF82702.1|106682_106991_-|CRISPR-associated-endoribonuclease-Cas2
MRIIVFFDLPVITAAKRKAANQFRQFLLKDGYQMLQLSVYSRIVKGRDSLQKHHNRLCANLPQEGSIRCLEITEKQYAAMKLLLGELKTQEKKVNSDQLLLF
>LS483369.1|SQF82703.1|107001_107916_-|putative-DNA-repair-protein
MTWRSLLIQNGGKLSLQRRQLLIQQNGESHTVPLEDIAVIIIENRETLITAPLLSALAEHGATLLTCDEQFLPCGQWLPYAQYHRQLKILKLQLNISEPLKKQLWQHIVRQKILNQAFVADETGNDLAAKRLRTLASEVRSGDTGNREAQAAALYFQALFGEKFTRNDNNAVNAALNYTYAVLRAAVARALTLYGWLPALGLFHRSELNPFNLADDFIEPLRPLADLTVIHLYEQGRLKTELTPGIKQHLIKTLHYQISIERQHFSTLAAIDKMVSSFQAGVTDKNAKQLKLPEILPLKEYQYE
>LS483369.1|SQF82704.1|107981_111227_-|putative-CRISPR-associated-protein
MAAFKPNPINYILGLDIGIASVGWAMVEIDEAENPIRLIDLGVRVFERAEVPKTGDSLAMARRLARSVRRLTRRRAHRLLRARRLLKREGILQAADFDENGLIKSLPNTPWQLRAAALDRKLMPLEWSAVLLHLIKHRGYLSQRKNEGETADKELGALLKGVADNAHTLQTGDFRTPAELALNKFEKESGHIRNQRGDYSHTFSRKDLQAELNLLFEKQKEFGNPHVSDGLKEGIETLLMTQRPALSGDAVQKMLGHCTFEPAEPKAAKNTYTAERFVWLTKLNNLRILEQGSERPLTDTERATLMDEPYRKSKLTYAQARKLLDLDDTAFFKGLRYGKDNAEASTLMEMKAYHAISRALEKEGLKDKKSPLSLSPELQDEIGTAFSLFKTDEDITGRLKDRVQPEILEALLKHINFDEFVQISLKALRRIVPLMEQGKRYDEACTEIYGDHYGKKNTEEEIYLPPIPADEIRNPVVLRALSQARKVINAVVRRYGSPARIHIETAREVGKSFKDRKEIEKRQEENRKDREKAAAKFREYFPNFVDEPKSKDILKLRLYEQQHGKCLYSGKEINLGRLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKSNQTPYEYFNGKDNSREWQKFKARVETSRFPRSKKQRILLQKFDEDGFKERNLNDTRYVNRFLCQFVADHMRLTGKGKRRVFASNGQITNLLRGFWGLRKVRAENDRHHALDAVVVACSTVAMQQKITRFVRYKEMNAFDGKTIDKETGEVLHQKAHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTPEKLRALLAEKLSSRPEAVHEYVTPLFVSRAPNRKMSGQGHMETVKSAKRLDEGISVLRVPLTQLKLKDLEKMVNREREPKLYEALKARLEAHKDDPAKAFAEPFYKYDKAGNRTQQVKAVRVEQVQKTGVWVRNHNGIADNATMVRVDVFEKGGKYYLVPIYSWQVAKGILPDRAVVAYADEENWTVIDESFRFKFVLYSNDLIKVRLKKDSFLGYFSGLDRATGAISLREHDMEKSKGKDGIYRIGVKTALSFQKYQIDELGKEIRPCRLKKRPPVR
>LS483369.1|SQF82705.1|111505_115009_-|DNA-polymerase-III-subunit-alpha
MTYTAIQRQPCYNTPFIVHADFAMTEPTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIKPIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKDRNIHHTELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAMEAEPQIQELIEAEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNADQKAANANQGGLFDMMEDAIEPVRLVNAPMWSESEKLTEEKTVIGFYLSGHPFSPYAQEVRQIAPTKLGRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQIEIMVSGQTLENCADYLKSDQVLIIESKVSRDDYGGGDGLRIMANQVMTLQMARERYARSLSLALAPGHDIARLAAILTAHRLPDTSHIPLQLSYSNGKASGKLKIAPKWMVTPSTGLFDELETLLGSRSVRVNW
>LS483369.1|SQF82706.1|115157_115397_-|ABC-transporter-ATP-binding-protein
MGIAQRQERLSLARALLHKPQILFLDEATNQLDDESALTLMHILKRELPDTLVIGISHQNEIKNLFERKINLTACHPSE
>LS483369.1|SQF82707.1|115701_115935_+|putative-RNA-binding-protein
MEATVYLEDNEYIALCDLLKLAGLAESGGQAKAFIAEGLVLRNGETETRKTAKIRGGEVIEFDGARLEIADGYDPEA
>LS483369.1|SQF82708.1|115912_116116_+|Uncharacterised-protein
MDTTLKHKAEALLGEPLLDEPVRPESWECCGSDCGEACIQTIYWADKARYDAQRRKLKEAGWSDDAV
>LS483369.1|SQF82709.1|116247_117084_+|putative-metal-dependent-phosphoesterase
MIDLHCHSTVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGVEISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRLEAIAAKLEKKGIGGAYDGALALAANKEMVSRTHVAEFLIQAGHVKNKQQAFTKYLGDGKSCAVRHEWATLEDCVSAVNGAGGMAVIAHPMRYDLSATAKRNLFEEFKNLGGAGIEVHSGNCCKNDRLNYALLAERFGMLASAGSDFHRLNDFSGGILGACPELPENCRPVWAHFSRH
>LS483369.1|SQF82710.1|117136_118429_-|valine--pyruvate-transaminase
MQFSAFGEKFTQHSGILQLMDDLGDALKNDKPVNMLGGGNPARIPEIDRAFADIFSKLATEHAVENIGNYSNPQGDAALIDALTAFLNREYSWNLTADNIALTNGSQNAFFYLFNLFGGKFNLSDGTSAEKAILLPLAPEYIGYADVHVEGQHFVSVKPKIENVEHEGEAGFFKYRVDFDALENLPELKAGKIGAICCSRPTNPTGNVLTDGEMARLDALAREHGIPLIIDNAYGMPFPNIIYSDVTLNWHENIILCFSLSKVGLPGVRTGIIVAAPEVVKAVSSLNAIVNLAPTRFGAAIAAPLLESGEMKRLADQIIRPFYRNQAQTAVSLLKRELGAYPMKIHKPEGAIFLWLWFENLPVSSQTLYEMLKAEGTLIIPGEHFFVGIDTQDYPHAGECIRMSIAQDTQTLEKGIAAIGKTVRKLYDNV
>LS483369.1|SQF82711.1|118484_120395_-|pilin-glycosylation-protein
MTLETLLALPRNIKKICFLIHDFLMIFTAFWFTQSLKADYSNEWFDPANWQSFLLTALLTIGLFVRMGLYRAVTRFVSFHVLTTAFAGSLVSAVLFFLNTLIFEEKLRLALPVVYFLLLLVSVTGSRMVIRGLLSDHQKKHMTPVIIYGAGRSGRQLLEAVKQIREYSAVAFVDDNPKLWHTVIYDLAVYQPNAIAFLIERYGVEKILLAIPSATQEQRRRIISKLEAYPCEVLTIPGMKDLMDGKISIGTLKKISVSDLLGRDSVAPDDRLMNADIAGRTVMVTGAGGSIGSELCRQIIRRRPEKLLLFELSEFALYAIEKELREYCTQNNTDTEILPFLGSVQNRTLLTRIMTAGQVSTVYHAAAYKHVPMVEFNTVEGIRNNIFGTLECALAATASGVRTFVLISTDKAVRPTNTMGASKRMAELCLQALAAKPGQKTRFSMVRFGNVLGSSGSVVPLFEKQIAEGGPLTLTHPEITRYFMTIPEAAQLVIQAGAMGTGGDVFVLDMGESVKIIDLARQMITLSGLKPKTPEQPDGDIEILITGLRPGEKLYEELLIGDNVRKTGHPRIMTANETMLPWHELSALLDRIRSACDRYDQQAIRTLLINAPTGFAPSDGICDLLWVRETHRKNAV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483369_1	1.1\|106158\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106158-106187	30	NZ_CP029602	Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence	33717-33746	6	0.8
LS483369_1	1.3\|106290\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106290-106319	30	MN693029	Marine virus AFVG_117M56, complete genome	28763-28792	6	0.8
LS483369_1	1.3\|106290\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106290-106319	30	MN692985	Marine virus AFVG_117M57, complete genome	28860-28889	6	0.8
LS483369_1	1.5\|106422\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106422-106451	30	NZ_CP031163	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence	518725-518754	6	0.8
LS483369_1	1.7\|106554\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106554-106583	30	NZ_CP015623	Corynebacterium crudilactis strain JZ16 plasmid pCRULAC1, complete sequence	1874-1903	6	0.8
LS483369_1	1.2\|106224\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106224-106253	30	NC_010923	Neisseria lactamica plasmid pNL9, complete sequence	7053-7082	7	0.767
LS483369_1	1.5\|106422\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106422-106451	30	NZ_CP016891	Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence	8472-8501	7	0.767
LS483369_1	1.5\|106422\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106422-106451	30	NZ_CP016891	Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence	52357-52386	7	0.767
LS483369_1	1.5\|106422\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106422-106451	30	NZ_CP016891	Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence	143933-143962	7	0.767
LS483369_1	1.5\|106422\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106422-106451	30	HM144385	Brochothrix phage NF5, complete genome	8728-8757	7	0.767
LS483369_1	1.1\|106158\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106158-106187	30	NZ_LR699074	Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2	28670-28699	9	0.7
LS483369_1	1.1\|106158\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106158-106187	30	NZ_LR699074	Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2	73530-73559	9	0.7
LS483369_1	1.1\|106158\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106158-106187	30	NZ_LR699074	Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2	41999-42028	9	0.7
LS483369_1	1.1\|106158\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106158-106187	30	NZ_LR699074	Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2	66130-66159	9	0.7
LS483369_1	1.1\|106158\|30\|LS483369\|PILER-CR,CRISPRCasFinder,CRT	106158-106187	30	NZ_LR699074	Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2	112539-112568	9	0.7

1. spacer 1.1|106158|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029602 (Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

gtaccggagccgcgtttgccgacacggata	CRISPR spacer
acgtcgtagccgcggttgccgacacggata	Protospacer
....** ******* ***************

2. spacer 1.3|106290|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to MN693029 (Marine virus AFVG_117M56, complete genome) position: , mismatch: 6, identity: 0.8

aataatgacatcgcgtttaatctcttcttc	CRISPR spacer
tattgcgacatcgcgtttaatatctttttc	Protospacer
 ** ..*************** ****.***

3. spacer 1.3|106290|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to MN692985 (Marine virus AFVG_117M57, complete genome) position: , mismatch: 6, identity: 0.8

aataatgacatcgcgtttaatctcttcttc	CRISPR spacer
tattgcgacatcgcgtttaatatctttttc	Protospacer
 ** ..*************** ****.***

4. spacer 1.5|106422|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031163 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence) position: , mismatch: 6, identity: 0.8

ggcgtgaacggtgctgataag--gctgttgca	CRISPR spacer
ggcgtgaacggtgctgatcaggagccgtcc--	Protospacer
****************** **  **.**.

5. spacer 1.7|106554|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015623 (Corynebacterium crudilactis strain JZ16 plasmid pCRULAC1, complete sequence) position: , mismatch: 6, identity: 0.8

ttctatctcttggggtgtgaagtgttgtcc	CRISPR spacer
tgcgttttcttggggtgtgcagtgttttcc	Protospacer
* *  *.************ ****** ***

6. spacer 1.2|106224|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NC_010923 (Neisseria lactamica plasmid pNL9, complete sequence) position: , mismatch: 7, identity: 0.767

actttctaatttacaacgcctccacctatt	CRISPR spacer
actttctaatttaccacgccccccgccgat	Protospacer
************** *****.**  *.. *

7. spacer 1.5|106422|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016891 (Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ggcgtgaacggtgctgataaggctgttgca	CRISPR spacer
gtcattaacggtgctgacaaggctgttctg	Protospacer
* *.* ***********.********* ..

8. spacer 1.5|106422|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016891 (Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ggcgtgaacggtgctgataaggctgttgca	CRISPR spacer
gtcattaacggtgctgacaaggctgttctg	Protospacer
* *.* ***********.********* ..

9. spacer 1.5|106422|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016891 (Pantoea agglomerans strain C410P1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ggcgtgaacggtgctgataaggctgttgca	CRISPR spacer
gtcattaacggtgctgacaaggctgttctg	Protospacer
* *.* ***********.********* ..

10. spacer 1.5|106422|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 7, identity: 0.767

ggcgtgaacggtgctgataaggctgttgca	CRISPR spacer
gtcgggaacggtgctgacaaggctggtaag	Protospacer
* ** ************.******* *. .

11. spacer 1.1|106158|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR699074 (Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2) position: , mismatch: 9, identity: 0.7

gtaccggagccgcgtttgccgacacggata	CRISPR spacer
aagaagcggccgcgtttgccggcacggatg	Protospacer
. .  * .*************.*******.

12. spacer 1.1|106158|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR699074 (Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2) position: , mismatch: 9, identity: 0.7

gtaccggagccgcgtttgccgacacggata	CRISPR spacer
aagaagcggccgcgtttgccggcacggatg	Protospacer
. .  * .*************.*******.

13. spacer 1.1|106158|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR699074 (Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2) position: , mismatch: 9, identity: 0.7

gtaccggagccgcgtttgccgacacggata	CRISPR spacer
aagaagcggccgcgtttgccggcacggatg	Protospacer
. .  * .*************.*******.

14. spacer 1.1|106158|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR699074 (Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2) position: , mismatch: 9, identity: 0.7

gtaccggagccgcgtttgccgacacggata	CRISPR spacer
aagaagcggccgcgtttgccggcacggatg	Protospacer
. .  * .*************.*******.

15. spacer 1.1|106158|30|LS483369|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR699074 (Beijerinckiaceae bacterium RH AL1 isolate RH_AL1 plasmid 2) position: , mismatch: 9, identity: 0.7

gtaccggagccgcgtttgccgacacggata	CRISPR spacer
aagaagcggccgcgtttgccggcacggatg	Protospacer
. .  * .*************.*******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

450176 : 557534

110

uncultured_Caudovirales_phage(11.63%)

tRNA,integrase,terminase,protease,portal,tail,capsid

attL 450143:450169|attR 551476:551502

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
450143:450169	attL	NA	NA	NA	NA
SQF83037.1\|450176_452468_-\|protease	ATP-dependent protease ATP-binding protein	A0A223W0B1	Agrobacterium_phage	2.7e-168	42.5
SQF83038.1\|452469_452772_-\|protease	ATP-dependent Clp protease adaptor protein ClpS	NA	NA	NA	NA
SQF83039.1\|453550_454882_-	PmbA protein	NA	NA	NA	NA
SQF83040.1\|455034_455547_+	x96 protein	NA	NA	NA	NA
SQF83041.1\|455593_456307_+	putative thiosulfate sulfur transferase	NA	NA	NA	NA
SQF83042.1\|456375_458076_+	RecJ	A7KV88	Bacillus_phage	2.6e-67	31.1
SQF83043.1\|458138_459062_+	putative transporter	NA	NA	NA	NA
SQF83044.1\|459138_460527_-	fumarate hydratase	NA	NA	NA	NA
SQF83045.1\|460675_462655_-	transketolase	NA	NA	NA	NA
SQF83046.1\|463218_464715_+	putative ferredoxin	NA	NA	NA	NA
SQF83047.1\|464717_465266_+	Inner membrane protein	NA	NA	NA	NA
SQF83048.1\|465325_466501_-	2-nitropropane dioxygenase	NA	NA	NA	NA
SQF83049.1\|466634_466751_+	Uncharacterised protein	NA	NA	NA	NA
SQF83050.1\|467119_468505_+	DNA polymerase III subunit	G3MAD3	Bacillus_virus	1.2e-09	29.8
SQF83051.1\|468715_469495_-	putative ferredoxin--NADP reductase	NA	NA	NA	NA
SQF83052.1\|469768_472858_+	TonB-dependent receptor domain-containing protein	NA	NA	NA	NA
SQF83053.1\|473001_474060_+	DNA polymerase IV	I6RSM4	Salmonella_phage	2.6e-17	31.6
SQF83054.1\|474158_476174_-	ATP-dependent DNA helicase	A7KV33	Bacillus_phage	6.9e-107	36.6
SQF83055.1\|476193_476958_-	3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	1.3e-18	33.3
SQF83056.1\|477157_478204_+	recombinase A	A0A2D1GPX2	Mycobacterium_phage	2.4e-119	64.6
SQF83057.1\|478367_479288_-	Aromatic amino acid exporter YddG	NA	NA	NA	NA
SQF83058.1\|479412_479748_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQF83059.1\|479829_482013_-	DNA polymerase III subunits gamma and tau	A0A1U9WR94	Streptococcus_virus	1.6e-45	39.6
SQF83060.1\|482100_484077_-	DNA mismatch repair protein	A0A1B2LRQ5	Wolbachia_phage	7.2e-85	31.9
SQF83061.1\|484220_484406_+	Protein of uncharacterised function (DUF3460)	NA	NA	NA	NA
SQF83062.1\|484416_485085_+	O-methyltransferase	NA	NA	NA	NA
SQF83063.1\|485084_485801_+	putative lipoprotein	NA	NA	NA	NA
SQF83064.1\|485848_486334_+	phosphoribosylaminoimidazole carboxylase catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	8.1e-22	43.1
SQF83065.1\|486405_487974_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
SQF83066.1\|488104_488581_+	transcription elongation factor GreA	NA	NA	NA	NA
SQF83067.1\|488716_488860_+	Uncharacterised protein	NA	NA	NA	NA
SQF83068.1\|489031_489214_+	Uncharacterised protein	NA	NA	NA	NA
SQF83069.1\|489274_490261_-\|tRNA	tRNA-dihydrouridine synthase C	NA	NA	NA	NA
SQF83070.1\|490395_491583_+\|integrase	Putative integrase/recombinase phage associated protein	A0A2H4J8L8	uncultured_Caudovirales_phage	1.6e-84	44.3
SQF83071.1\|491641_492136_-	phage associated protein	NA	NA	NA	NA
SQF83072.1\|492453_492717_-	Pyocin activator protein PrtN	NA	NA	NA	NA
SQF83073.1\|492781_493729_-	phage associated protein	A0A0M3LQ47	Mannheimia_phage	1.1e-96	57.5
SQF83074.1\|493700_493931_-	Uncharacterised protein	A0A0M3LSX3	Mannheimia_phage	3.6e-12	58.1
SQF83075.1\|493927_494131_-	putative phage associated protein	NA	NA	NA	NA
SQF83076.1\|494220_494859_-	Uncharacterised protein	NA	NA	NA	NA
SQF83077.1\|494981_495242_-	putative phage associated protein	NA	NA	NA	NA
SQF83078.1\|495276_495492_-	putative phage associated protein	NA	NA	NA	NA
SQF83079.1\|495596_495812_-	Uncharacterised protein	NA	NA	NA	NA
SQF83080.1\|496052_496577_-	putative phage associated protein	NA	NA	NA	NA
SQF83081.1\|496580_497279_-	putative CI protein	Q7Y5W5	Haemophilus_phage	1.7e-52	55.1
SQF83082.1\|497392_497623_+	Uncharacterized protein conserved in bacteria, prophage-related	NA	NA	NA	NA
SQF83083.1\|497684_497807_+	Uncharacterised protein	NA	NA	NA	NA
SQF83084.1\|497784_498132_+	putative phage associated protein	NA	NA	NA	NA
SQF83085.1\|498246_501093_+	Zinc-binding domain of primase-helicase family protein	A0A2H4JF22	uncultured_Caudovirales_phage	1.8e-73	32.4
SQF83086.1\|501691_502072_+	Uncharacterised protein	NA	NA	NA	NA
SQF83087.1\|502218_502659_-	Uncharacterised protein	NA	NA	NA	NA
SQF83088.1\|502728_503316_+	Terminase small subunit	A0A2H4J8R0	uncultured_Caudovirales_phage	5.8e-14	35.7
SQF83089.1\|503414_504998_+\|terminase	Phage terminase-like protein, large subunit	Q3HQS7	Burkholderia_phage	1.5e-178	58.4
SQF83090.1\|505006_506248_+\|portal	phage portal protein, HK97 family	Q3HQS8	Burkholderia_phage	5.0e-108	51.1
SQF83091.1\|506219_507065_+\|protease	ATP-dependent Clp protease proteolytic subunit 1	Q3HQS9	Burkholderia_phage	7.1e-74	54.1
SQF83092.1\|507068_508304_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	Q3HQT0	Burkholderia_phage	1.3e-108	52.9
SQF83093.1\|508397_508685_+	Uncharacterised protein	NA	NA	NA	NA
SQF83094.1\|508681_508999_+	uncharacterized phage protein (possible DNA packaging)	Q6JIM5	Burkholderia_virus	2.9e-12	43.1
SQF83095.1\|509428_509830_+	putative phage associated protein	A0A088FRG2	Mycobacterium_phage	1.0e-09	57.1
SQF83096.1\|509883_510513_+	Uncharacterised protein	NA	NA	NA	NA
SQF83097.1\|510883_511405_+	Uncharacterised protein	NA	NA	NA	NA
SQF83098.1\|511364_511724_+	Uncharacterised protein	NA	NA	NA	NA
SQF83099.1\|511792_512437_+	putative phage associated protein	A0A0H5BBY3	Pseudomonas_phage	6.7e-48	46.9
SQF83100.1\|512508_512826_+	putative phage associated protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	5.1e-09	29.9
SQF83101.1\|512843_513146_+	putative phage associated protein	E7EKR1	Edwardsiella_phage	2.7e-07	43.2
SQF83102.1\|513138_516348_+\|tail	putative phage tail length tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	2.0e-39	32.2
SQF83103.1\|516370_516697_+\|tail	putative phage minor tail protein	Q3HQU0	Burkholderia_phage	1.5e-16	41.5
SQF83104.1\|516699_517404_+\|tail	putative phage minor tail protein	Q9FZU6	Neisseria_meningitidis_phage	6.6e-73	70.4
SQF83105.1\|517405_518152_+\|tail	putative phage tail assembly protein	Q9FZU5	Neisseria_meningitidis_phage	3.6e-69	53.3
SQF83106.1\|518148_518970_+\|tail	putative phage tail assembly protein	Q9FZU4	Neisseria_meningitidis_phage	1.5e-52	46.1
SQF83107.1\|518959_522838_+\|tail	putative phage tail protein	Q9FZU3	Neisseria_meningitidis_phage	6.9e-281	56.9
SQF83108.1\|522834_523182_+	Uncharacterised protein	NA	NA	NA	NA
SQF83109.1\|523165_525154_+	Uncharacterised protein	NA	NA	NA	NA
SQF83110.1\|525205_525523_+	putative phage associated protein	NA	NA	NA	NA
SQF83111.1\|525587_526049_+	putative phage associated protein	NA	NA	NA	NA
SQF83112.1\|526049_526382_+	phage associated protein	NA	NA	NA	NA
SQF83113.1\|526368_526704_+	Uncharacterised protein	NA	NA	NA	NA
SQF83114.1\|526874_527246_+	Uncharacterised protein	NA	NA	NA	NA
SQF83115.1\|527289_527949_+	Uncharacterised protein	Q708K2	Streptococcus_phage	6.2e-41	50.0
SQF83116.1\|527958_528423_+	Uncharacterised protein	A0A0R6PGN1	Moraxella_phage	2.0e-30	47.2
SQF83117.1\|528419_528884_+	Uncharacterised protein	A0A0R6PGL8	Moraxella_phage	3.7e-32	50.7
SQF83118.1\|528896_529394_+	phage associated protein	A0A0B5L5G5	Acinetobacter_phage	3.7e-46	54.8
SQF83119.1\|529508_530417_-	putative phage related protein	A0A2H4FRZ6	Salmonella_phage	5.0e-41	39.0
SQF83120.1\|530724_530886_+	putative phage associated protein	NA	NA	NA	NA
SQF83121.1\|530911_531802_-	phage associated protein	D0UIK6	Aggregatibacter_phage	1.3e-17	39.7
SQF83122.1\|532368_533409_+	P63C domain	A0A0N7KZA9	Stx2-converting_phage	2.2e-56	42.3
SQF83123.1\|533445_533634_+\|tail	Minor tail protein Gp26	NA	NA	NA	NA
SQF83124.1\|533721_533889_-	putative phage associated protein	NA	NA	NA	NA
SQF83125.1\|534222_534384_+	putative phage associated protein	NA	NA	NA	NA
SQF83126.1\|534811_538645_-	putative oxidoreductase	NA	NA	NA	NA
SQF83127.1\|539174_540866_+	D-lactate dehydrogenase	NA	NA	NA	NA
SQF83128.1\|541054_541426_+	putative lipoprotein	NA	NA	NA	NA
SQF83129.1\|541585_542134_+	macrophage infectivity potentiator-related protein	NA	NA	NA	NA
SQF83130.1\|542229_543321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQF83131.1\|543445_543616_+	rebredoxin	NA	NA	NA	NA
SQF83132.1\|543729_545799_-	TonB dependent receptor	NA	NA	NA	NA
SQF83133.1\|546095_548852_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	7.2e-91	33.0
SQF83134.1\|548984_549344_+	Uncharacterised protein	NA	NA	NA	NA
SQF83135.1\|549404_549905_-	chaperone protein HscB	NA	NA	NA	NA
SQF83136.1\|549987_550209_+	Alternative ribosome-rescue factor A	NA	NA	NA	NA
SQF83137.1\|550168_550489_-	HesB/YadR/YfhF family protein	A0A2H4N7N5	Lake_Baikal_phage	6.3e-23	49.5
SQF83138.1\|550574_550745_-	Uncharacterised protein	NA	NA	NA	NA
SQF83139.1\|550853_551240_-	scaffold protein	A0A218MKD1	uncultured_virus	1.9e-53	77.3
SQF83140.1\|551306_551435_-	Uncharacterised protein	NA	NA	NA	NA
SQF83141.1\|551515_552730_-	cysteine desulfurase	H7BUW1	unidentified_phage	6.1e-34	38.2
551476:551502	attR	NA	NA	NA	NA
SQF83142.1\|552759_553206_-	DNA-binding protein	NA	NA	NA	NA
SQF83143.1\|553560_554733_+	L-lactate dehydrogenase	NA	NA	NA	NA
SQF83144.1\|554797_555742_-\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
SQF83145.1\|555753_556125_-	ribosome-binding factor A	NA	NA	NA	NA
SQF83146.1\|556289_557534_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.6e-130	57.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage