CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483381	Streptococcus sobrinus strain NCTC10921 genome assembly, chromosome: 1	2 crisprs	DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csm6,DinG	0	5	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483381_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483381_1

448576-448659

Orphan

Consensus_repeat	Method
CCAGGCTGTTTTGACACTTGCTAGGCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483381_1

>merge|LS483381|1|448576-448659|CRISPRCasFinder
CCAGGCTGTTTTGACACTTGCTAGGCAAGTTTCATTTCCAACTTTTGACAGTCTCCCAGACTGTTTTGACACTTGCTAGGCAAG

>LS483381|1|1|448576-448659|CRISPRCasFinder
CCAGGCTGTTTTGACACTTGCTAGGCAAG	TTTCATTTCCAACTTTTGACAGTCTC
CCAGACTGTTTTGACACTTGCTAGGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483381.1\|SQG19022.1\|442716_443019_+\|aspartyl/glutamyl-tRNA-amidotransferase-subunit-C	unknown	unknown	gnl\|CDD\|178810
LS483381.1\|SQG19027.1\|450343_451099_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|183775
LS483381.1\|SQG19017.1\|436672_437374_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
LS483381.1\|SQG19060.1\|456297_456609_+\|ancient-RNA-binding-IF3-C-fold-protein	unknown	unknown	gnl\|CDD\|224451
LS483381.1\|SQG19051.1\|453505_453766_-\|prevent-host-death-family-protein	unknown	unknown	gnl\|CDD\|376852
LS483381.1\|SQG19025.1\|446851_447967_+\|Methionine-synthase-II-(cobalamin-independent)	unknown	unknown	gnl\|CDD\|180482
LS483381.1\|SQG19028.1\|451638_452364_+\|prophage-pi3-protein-59	unknown	unknown	gnl\|CDD\|367814
LS483381.1\|SQG19023.1\|443018_444485_+\|aspartyl/glutamyl-tRNA-amidotransferase-subunit-A	unknown	unknown	gnl\|CDD\|234572
LS483381.1\|SQG19021.1\|441774_442551_-\|TraX-family-protein	unknown	unknown	gnl\|CDD\|368639
LS483381.1\|SQG19026.1\|449399_450275_+\|hypothetical-cytosolic-protein	unknown	unknown	gnl\|CDD\|337977
LS483381.1\|SQG19030.1\|453198_453513_-\|Plasmid-stabilisation-system-protein	unknown	unknown	gnl\|CDD\|368240
LS483381.1\|SQG19018.1\|437605_438067_+\|ABC-transporter-permease	unknown	unknown	unknown
LS483381.1\|SQG19016.1\|435994_436552_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
LS483381.1\|SQG19056.1\|454745_455864_+\|ribosome-biogenesis-GTPase-YqeH	unknown	unknown	gnl\|CDD\|237511
LS483381.1\|SQG19054.1\|454218_454746_+\|HAD-superfamily-hydrolase	unknown	unknown	gnl\|CDD\|225090
LS483381.1\|SQG19058.1\|455879_456251_+\|Predicted-methylated-DNA-protein-cysteine-methyltransferase	unknown	unknown	gnl\|CDD\|376440
LS483381.1\|SQG19019.1\|438070_440239_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
LS483381.1\|SQG19020.1\|440537_441557_-\|integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|225382
LS483381.1\|SQG19029.1\|452515_453058_+\|phosphoribosylformylglycinamidine	unknown	unknown	unknown
LS483381.1\|SQG19024.1\|444484_445927_+\|glutamyl-tRNA-Gln-amidotransferase-chain-B	unknown	unknown	gnl\|CDD\|235489

Protein	Function_ID	Function_description	E-value
LS483381.1\|SQG19022.1\|442716_443019_+\|aspartyl/glutamyl-tRNA-amidotransferase-subunit-C	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	8.74272e-34
LS483381.1\|SQG19027.1\|450343_451099_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|183775	PRK12826, PRK12826, SDR family oxidoreductase.	1.15966e-94
LS483381.1\|SQG19017.1\|436672_437374_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.65538e-105
LS483381.1\|SQG19060.1\|456297_456609_+\|ancient-RNA-binding-IF3-C-fold-protein	gnl\|CDD\|224451	COG1534, COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis].	9.43411e-32
LS483381.1\|SQG19051.1\|453505_453766_-\|prevent-host-death-family-protein	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	7.40079e-07
LS483381.1\|SQG19025.1\|446851_447967_+\|Methionine-synthase-II-(cobalamin-independent)	gnl\|CDD\|180482	PRK06233, PRK06233, vitamin B12 independent methionine synthase.	2.22157e-136
LS483381.1\|SQG19023.1\|443018_444485_+\|aspartyl/glutamyl-tRNA-amidotransferase-subunit-A	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
LS483381.1\|SQG19021.1\|441774_442551_-\|TraX-family-protein	gnl\|CDD\|368639	pfam05857, TraX, TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.	1.18952e-21
LS483381.1\|SQG19026.1\|449399_450275_+\|hypothetical-cytosolic-protein	gnl\|CDD\|337977	pfam11311, DUF3114, Protein of unknown function (DUF3114). Some members in this family of proteins with unknown function are annotated as cytosolic proteins. This cannot be confirmed.	1.2103e-97
LS483381.1\|SQG19030.1\|453198_453513_-\|Plasmid-stabilisation-system-protein	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	1.2862e-06
LS483381.1\|SQG19028.1\|451638_452364_+\|prophage-pi3-protein-59	gnl\|CDD\|367814	pfam04103, CD20, CD20-like family. This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulfide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton.	3.19552e-05
LS483381.1\|SQG19016.1\|435994_436552_-\|transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	7.91982e-09
LS483381.1\|SQG19056.1\|454745_455864_+\|ribosome-biogenesis-GTPase-YqeH	gnl\|CDD\|237511	PRK13796, PRK13796, GTPase YqeH; Provisional.	0
LS483381.1\|SQG19058.1\|455879_456251_+\|Predicted-methylated-DNA-protein-cysteine-methyltransferase	gnl\|CDD\|376440	pfam01035, DNA_binding_1, 6-O-methylguanine DNA methyltransferase, DNA binding domain. This domain is a 3 helical bundle.	4.8187e-12
LS483381.1\|SQG19019.1\|438070_440239_+\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.41109e-13
LS483381.1\|SQG19020.1\|440537_441557_-\|integrase-core-domain-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	5.62021e-82
LS483381.1\|SQG19054.1\|454218_454746_+\|HAD-superfamily-hydrolase	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	5.37287e-85
LS483381.1\|SQG19024.1\|444484_445927_+\|glutamyl-tRNA-Gln-amidotransferase-chain-B	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0

>LS483381.1|SQG19025.1|446851_447967_+|Methionine-synthase-II-(cobalamin-independent)
MTKKYFEHVGSFLRPVELKEAREAFEAGKLSQEELTAVENRLITDLVDKQVAIGLEKITDGEFRRAYWHLDNFWGFDGVEHEHFGQGYLFHGEETGDDTAVLRGKLGFTKENHPFIAHYDFYKKLADERGVEAKITIPAPAQFLAELNRGKNAATVAEFYPSRQDFLRAIAEVYREEILALYETGARTVQLDDCTWGMLIDEDFWHTMAGAGFKKEDVIEEYLYVNNNAIKDLPSDLTINTHVCRGNFHSTYAAKGAYDDVAEAFFGRENARAYFLEYDNERSGGFEPLAAFKGLDKVAVLGLITTKDGQLEDKETIIQRIHEAAEILPLDQLWLATQCGFASTQEGNILTEEDQWKKLTLVKEIIDEVWG
>LS483381.1|SQG19024.1|444484_445927_+|glutamyl-tRNA-Gln-amidotransferase-chain-B
MNFETIIGLEVHVELNTNSKIFSPSSAHFGENPNANTNVIDWSFPGVLPVMNKGVIDAGIKAALALNMDIHQTMHFDRKNYFYPDNPKAYQISQFDEPIGYNGWLEAQLDDGSIKKIRIERAHLEEDAGKNTHADDGYSYVDLNRQGVPLIEIVSEADMRSPEEAYAYLTTLKEIIQYTGISDVKMEEGSMRVDANISLRPYGQEEFGTKTELKNLNSFSNVRKGLEYEVERQAKILRSGGVIRQETRRYDEANKGTILMRVKEGAADYRYFPEPDLPIFEISDDWIEEMRDSLPEFAKDRRARYVSQYGLSDYDANQLTASKATSDFFEAAVGLGGDAKQVSNWLQGEVAQFLNSENKNLEDIQLTPDNLVEMLGLIEDSTISSKIAKKVFVHLAKNGDGARDYVEKAGLVQISDPEILIPIIHQVFADNEAAVADFKSGKRNADKAFTGFLMKATKGQANPQVALKLLAQELAKLKEE
>LS483381.1|SQG19023.1|443018_444485_+|aspartyl/glutamyl-tRNA-amidotransferase-subunit-A
MSFNDKTIEELHDLLVKKEISATELTQATLEDINAREETIGSFITVAQEEALAQAKSLDEQGIDADNVLSGIPLAVKDNISTKGILTTAASKMLYNYEPIFDATAVANAKQKGMIVVGKTNMDEFAMGGSTETSYFKKTKNAWDQSKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRFGLIAFGSSLDQIGPFAQTVKENAQVLNAIASEDKKDSTSAPVRISDYTSKIGQDIKGMRIALPKEYLGKGIDPQIKDNVLAAAKQFEKLGAVVEEVSLPHSKYGVAVYYIIASSEASSNLQRFDGVRYGFRADDANSLEDIYVKTRSQGFGDEVKRRIMLGTFSLSSGYYDAYFKKAGQVRTLIIQDFEKVFADYDLILGPTSPTVAFGLDTLNHDPVAMYLADLLTIPVNLAGLPGISLPSGFVDGLPVGLQLIGPKYGEETIYQAAAAFEAVTDYHKQRPKIFGGDH
>LS483381.1|SQG19022.1|442716_443019_+|aspartyl/glutamyl-tRNA-amidotransferase-subunit-C
MKISEEEVRHVATLSKLAFSDEETTEFATTLTKIVDMVELLNEVDTTGVAITTTMADRRTVLRPDVAEEGTDRDQLFKNVPEAKDYYIKVPAILDDGGDA
>LS483381.1|SQG19021.1|441774_442551_-|TraX-family-protein
MKKSIGLNTNQLKYIALSFMVLDSAFFAFPGLPAWLHLITRFVAPLFAYLTLEGFFHTRNRKRHLLRLWSVAILMQIGDFLSQLLLGKEHLINDNIFLTLALGYSFLYFWQKARDHDRPILNSVLGSLIFLAGLFLSLIGLPFGAMVITLEGGIPILTLMLIFWAFYGHRRKQLIVFGIWSVISFLILGPDMNVSAAPSFSVWFEMFCYNSDCMSFLFLPFLFLYNGQKGSSKPIHKWFFYIFYPLHLWILHLLAFFL
>LS483381.1|SQG19020.1|440537_441557_-|integrase-core-domain-protein
MSTTNCTTKQPYCHLSEVERGKIEAFLSEGVKPAEIARRLGRSRSTISREIKRGTTKQVKQVNGKKIYFDYYFADLAQRRYVEGRQGIDYLKLEKVSEHFLKAFEEAMKASPRVHSVESFVYAYKEEHPSETVPSTKTLYNYSHQGLLAIKAIDLPKAVRLRKKTKKRSSTQKHLGVSIEERPETINDRSVFGHWEIDSVLGTQKAGEPSILTLVERKTRYAITAYLTGKTAATANEAVKELMGLYPIKSITADNGSEFAALNELEGVQIYYAHAYSSYERGTNENFNGLLREFVPKGKSLKTLTAEDLAKATLAINQRPRRLLNYQTAKTLFGLAQTA
>LS483381.1|SQG19019.1|438070_440239_+|ABC-transporter-permease
MKEFKIVGFINSSEIWSTLNLGSSTAGDGTLASYGIVSSSAFADNSNTLARIRYDRLKKISPFSDVYSSKINHYQDELDKLLEDNGQERLRELKKKPQEKVNQSKQALTAAKEQLQEQTRALTSASPDQQQLVQRSLAQARQTIAQKEQQIQEAQAKIDAMPKPTYTTSTRSTMLGGEGYTVYSSNADSMGNLGNIFPIVLYAVAALVTFTTMTRFVDEERTNSGLFRALGYSKQDVIRKFLIYGLVASMLGTVLGIIGGHYLLSRIVSQIFTGKMTLGKPTLSFYWSYTFIAIILALVSAVLPVYLIASRELSEKPAQLLLPKPPMRGAKIFLERIGFIWNRLSFTHKVTVRNIFRYKQRMLMTIFGVAGSVALLFAGLGIQSSLGKVIREQFTQLTPYHLVVMKKETDEKDKPLSDFLKSKEVDRYQSLYYTHLTEEIPQLKDRQSIALMVTNRTDFDGFVQLKDANSNRTLTLPKTGVLISEKLARFYKVQAGETFRLKDSDGKERRVKVAAVVKMNAGHYLFMSQSAYQDIFGEKPDNNAYFINLKDDSASQIKDVSTELLAMNSVVSVTQNTSRMKMIKTIVTSLNAAMTVLVIITVLLAIVILYNLTNINIAERLRELSTIKVLGFFNREVTLYIYRETIVLSLIGIVLGLGAGRYLHQSIMEMIGSDNVSFGTVVDETVYVIPIIFIGLILVGLGLIVHRRLKNLDMLEALQSVE
>LS483381.1|SQG19018.1|437605_438067_+|ABC-transporter-permease
MKKRIYWKTVWNTMLHSKGRFLSIMLLMFLGSFTFVGLKVTKPNMQKLATDYLQAHQTADLFVTAHYGFSQADQTELKNIKGADVEFGKVSDMTIEGTDDAMRVFSNSQSISTYQLERGRFPKETDEIALTSSLRKKYKIGDTLIFESSKKSN
>LS483381.1|SQG19017.1|436672_437374_+|ABC-transporter-ATP-binding-protein
MAYIEMKHSYKRYQMGETEIIANNDISFEINKGELVIILGASGAGKSTVLNILGGMDSNDEGQVLIDGNNIAAFNQKQLTAYRRSDVGFVFQFYNLVPNLTAKENVELASEIVDDAKDAALTLHEVGLGSRLNNFPAQLSGGEQQRVAIARALAKNPKLLLCDEPTGALDYQTGKQILKLLQNMSHQKGTTVIIVTHNASLAPIADRVIYLHDAKVNAINTNDWPQDIDTLEY
>LS483381.1|SQG19016.1|435994_436552_-|transcriptional-regulator
MTQKRHTQSKAKIKAAITELLLENNDFSSITIRQITEKANINRSTFYLHYQDKYDLIDKLMHEITDNLRKELNTNSATVKEGLIHSLTYLQSQQEFIKLIIGIAPVNFSQKTRHFISKLIETTPALFYDILNPDLPLPKDYMLTTYAASIESIYTHWVSTDNQASPEEVANMILTVRRFYQKNDD
>LS483381.1|SQG19026.1|449399_450275_+|hypothetical-cytosolic-protein
MPKIGSAAFWSGWKEVKNDKDPCRALRFVLDQLDLPQDLSGDLTENQALVAKFSPDLAPHDRFWSDLARQVRLVMKGKDFQEKTEFNRQLHQLRYVISSQQAQYVRQHYRKSGRTDQEALFAYLRANHLRPSLWDNARLHNKRQIKDGTFCFPDEQESYNIKVLLQFRTEFIIDGQGNFLNEVDAEKVTANGIINGASFNYGNTTKSHFRLDVCPVGPHDPAFRNQATKGYRSPNRTGRVRLARFWQERRTADFDRSLYNKNGGYAKDGQALISLIKQEKKAFKKALRARK
>LS483381.1|SQG19027.1|450343_451099_-|3-oxoacyl-[acyl-carrier-protein]-reductase
MFQLTNQIAVVTGGAKGIGRGIASVLHQQGAKVIILDKDQAAGQATAKNLGADFYSFNVTDSQGIAQTFQMIAEKYGRLDILCSNIGIYPQAKIADMSEAEWDLIQTVNLKGTFLVVKAAAKIMRHQGYGRIVLTSSITGPITGYPGWAHYGSTKAGQLGFMRSAALEYAKAGITINAVQPGNVLTEGLKTQGESYLNEMKKTVPTHTLGAPEDIGTAVAFLASKEAHYITGQTIVVDGGQILPESFDAIL
>LS483381.1|SQG19028.1|451638_452364_+|prophage-pi3-protein-59
MEPLKEDEKKVLAIIALVFGGIALVTSWMPFINNASAVLAIIAFILGVIAFFINLKKKKVLSLLSIMIAVISFIIVLMTQASYVSTIDKALGSNDKPTSEKQEKKESSSISDSDDDKETYKVGEKITFKGKVEYTITSVEWTDERNEFEDKQPKKVLKVTYNVKNLSDDDYVIGSDFELYANGSKMESYPNENTFETISAGRSYQGATEHFAVNDDKKLELEIKPYLSFRGTPAIIPLESE
>LS483381.1|SQG19029.1|452515_453058_+|phosphoribosylformylglycinamidine
MIKKILYYFVWVVAIGFSVFYFVSSGILNSFFKKKPVTTVSTRITSLEKVKQITFLNVGIQKVETSTETTKILFTDLDIPYSEKEVSIILNYKAKFGIKKPVKVTKTGKSNYKVVVLKFEVIGFELDKDKPYQLYSKSEGALSDSTKDVDTGKLATDSLSNEAQEEYLKQYKDLVQDSAK
>LS483381.1|SQG19030.1|453198_453513_-|Plasmid-stabilisation-system-protein
MTKENYQLRFLPLFEKDLNAIVDYISQSLQNPRAAHRLLSAVEGAINDRLARPLAFPAYPSIHKRRHPYYYIRVKNLIIFYVVIGNTMEVRKILYSKRNFDDFL
>LS483381.1|SQG19051.1|453505_453766_-|prevent-host-death-family-protein
MINIRPVSDLRNKFPEIEETVIKSNDPVFLTKNGYGTMVLMSLEQYDDLTSNLEKKLDEADLVAEESSVRYNKDGLFKRVRSRIDD
>LS483381.1|SQG19054.1|454218_454746_+|HAD-superfamily-hydrolase
MSIEDYLPTFAVEAVYDLKPESLRKHGISAVLVDLDNTLIAWDNPDGTPELREWLDDMTEADIPVVVVSNNKHERVKRAVDPFHVDFISRAMKPFTRGINKAIERYNFNRDEVVLVGDQLMTDIRACHRAGIRSILVKPLVTSDAWNTKFNRARERRVLKKMTQKYGPIEYQKEI
>LS483381.1|SQG19056.1|454745_455864_+|ribosome-biogenesis-GTPase-YqeH
MEELYCIGCGAKIQSRDKEAPGYTPQSSIEKSQETGELYCQRCFRLRHYNEIVDVAISDDDFLKLLHEVGDSQALVVNVVDIFDFNGSVIPGLSRFVAGNDVLLVGNKKDILPKSVKDGKVTQWLTERAHEEGLRPVDVLLTSAQNGQAIKELIARIEELRAGRDVYVVGVTNVGKSTLINAIIKEITGNQEIITTSRFPGTTLDKIEIPLDDGSYIFDTPGIIHRHQMAHYLSAKDLKYVSPKKEIKPKTYQLNPSQTLFLGGLGRFDFLQGDKQGFTAYFDNNLKLHRTKLQGADDFYDRHAGGLLTPPSAKELANFPKLVRHEFTITSKTDLVFSGLGWVRILAKPDSPVVVVGWAPEGVGVMVRKALI
>LS483381.1|SQG19058.1|455879_456251_+|Predicted-methylated-DNA-protein-cysteine-methyltransferase
MTQSSFIAPEKYAEAIRQIPYGKVVTLADLRAYLGQDDSAPFFSGVATLIVAWSEGDDPMPYWRVLKSGGEVNAKYPGGLEAQRELLEAEGHRIIQKGKTKLRYYVKDYQEKSYLFDVKKNLM
>LS483381.1|SQG19060.1|456297_456609_+|ancient-RNA-binding-IF3-C-fold-protein
MTLTSKQRAFLNSQAHAMKPIVQVGKNGLNDQIKTSVRNALDARELIKIKLLQNTDENIHEVAEILEEEIGAQSVAKTGRVLTLYKQSAKKENRKLSQKVKEI

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Crispr_ID: LS483381_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483381_2

852554-853315

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GTTTTACCCGCACACGCGGGGGTGATCCT	PILER-CR
GTTTTACCCGCACACGCGGGGGTGATCCT	CRISPRCasFinder
GTTTTACCCGCACACGCGGGGGTGATCCT	CRT

12 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LS483381_2

>merge|LS483381|2|852554-853315|PILER-CR,CRISPRCasFinder,CRT
GTTTTACCCGCACACGCGGGGGTGATCCTAAAGTTCCTGTACAATTTCTGTACGTGTTTTCGTTTTACCCGCACACGCGGGGGTGATCCTGCAGGGGAGATGAGGCGTGTTAAATGCGAGGTGTTTTACCCGCACACGCGGGGGTGATCCTAGAATACCATCCACCTGAGTAGTAGCGAGAGGGTTTTACCCGCACACGCGGGGGTGATCCTGCTTTATCAAATGCTGCTGAGCAGTCTAGGCAGTTTTACCCGCACACGCGGGGGTGATCCTCAAAGGCCTTGTCAGGTAGGTATTTATCGGTGAGTTTTACCCGCACACGCGGGGGTGATCCTGGTCTATCTGGTCAAGGTTCTTGACAGAAGTAGTTTTACCCGCACACGCGGGGGTGATCCCGCCGGCAAAAGCTATTCATTCCTTTTAAATTTGTTTTACCCGCACACGCGGGGGTGATCCTGAGTTTACTTATCTCTGGTTGGTTAACAAGTAGTTTTACCCGCACACGCGGGGGTGATCCTTCCAAGCGTTCTTGGATTTCCTGCTGATTAAAGTTTTACCCGCACACGCGGGGGTGATCCTGGTATTTTGACTGCTAGGTTTCATGGCTCGTCGTTTTACCCGCACACGCGAGGGTGATCCTATTTCCTCTCGGCCAAAGCAGTGAAACGGTTAGTTTTACCCGCACATGCGGGGGTGATCCTGGTTTTGGGGATGCTAACTGGTACGAATACTAGTTTTACCCGCACAGGCGGGTGTGGCATA

>LS483381|2|1|852554-853254|PILER-CR
GTTTTACCCGCACACGCGGGGGTGATCCT	AAAGTTCCTGTACAATTTCTGTACGTGTTTTC
GTTTTACCCGCACACGCGGGGGTGATCCT	GCAGGGGAGATGAGGCGTGTTAAATGCGAGGT
GTTTTACCCGCACACGCGGGGGTGATCCT	AGAATACCATCCACCTGAGTAGTAGCGAGAGG
GTTTTACCCGCACACGCGGGGGTGATCCT	GCTTTATCAAATGCTGCTGAGCAGTCTAGGCA
GTTTTACCCGCACACGCGGGGGTGATCCT	CAAAGGCCTTGTCAGGTAGGTATTTATCGGTGA
GTTTTACCCGCACACGCGGGGGTGATCCT	GGTCTATCTGGTCAAGGTTCTTGACAGAAGTA
GTTTTACCCGCACACGCGGGGGTGATCCC	GCCGGCAAAAGCTATTCATTCCTTTTAAATTT
GTTTTACCCGCACACGCGGGGGTGATCCT	GAGTTTACTTATCTCTGGTTGGTTAACAAGTA
GTTTTACCCGCACACGCGGGGGTGATCCT	TCCAAGCGTTCTTGGATTTCCTGCTGATTAAA
GTTTTACCCGCACACGCGGGGGTGATCCT	GGTATTTTGACTGCTAGGTTTCATGGCTCGTC
GTTTTACCCGCACACGCGAGGGTGATCCT	ATTTCCTCTCGGCCAAAGCAGTGAAACGGTTA
GTTTTACCCGCACATGCGGGGGTGATCCT

>LS483381|2|2|852554-853315|CRISPRCasFinder
GTTTTACCCGCACACGCGGGGGTGATCCT	AAAGTTCCTGTACAATTTCTGTACGTGTTTTC
GTTTTACCCGCACACGCGGGGGTGATCCT	GCAGGGGAGATGAGGCGTGTTAAATGCGAGGT
GTTTTACCCGCACACGCGGGGGTGATCCT	AGAATACCATCCACCTGAGTAGTAGCGAGAGG
GTTTTACCCGCACACGCGGGGGTGATCCT	GCTTTATCAAATGCTGCTGAGCAGTCTAGGCA
GTTTTACCCGCACACGCGGGGGTGATCCT	CAAAGGCCTTGTCAGGTAGGTATTTATCGGTGA
GTTTTACCCGCACACGCGGGGGTGATCCT	GGTCTATCTGGTCAAGGTTCTTGACAGAAGTA
GTTTTACCCGCACACGCGGGGGTGATCCC	GCCGGCAAAAGCTATTCATTCCTTTTAAATTT
GTTTTACCCGCACACGCGGGGGTGATCCT	GAGTTTACTTATCTCTGGTTGGTTAACAAGTA
GTTTTACCCGCACACGCGGGGGTGATCCT	TCCAAGCGTTCTTGGATTTCCTGCTGATTAAA
GTTTTACCCGCACACGCGGGGGTGATCCT	GGTATTTTGACTGCTAGGTTTCATGGCTCGTC
GTTTTACCCGCACACGCGAGGGTGATCCT	ATTTCCTCTCGGCCAAAGCAGTGAAACGGTTA
GTTTTACCCGCACATGCGGGGGTGATCCT	GGTTTTGGGGATGCTAACTGGTACGAATACTA
GTTTTACCCGCACAGGCGGGTGTGGCATA

>LS483381|2|1|852554-853315|CRT
GTTTTACCCGCACACGCGGGGGTGATCCT	AAAGTTCCTGTACAATTTCTGTACGTGTTTTC
GTTTTACCCGCACACGCGGGGGTGATCCT	GCAGGGGAGATGAGGCGTGTTAAATGCGAGGT
GTTTTACCCGCACACGCGGGGGTGATCCT	AGAATACCATCCACCTGAGTAGTAGCGAGAGG
GTTTTACCCGCACACGCGGGGGTGATCCT	GCTTTATCAAATGCTGCTGAGCAGTCTAGGCA
GTTTTACCCGCACACGCGGGGGTGATCCT	CAAAGGCCTTGTCAGGTAGGTATTTATCGGTGA
GTTTTACCCGCACACGCGGGGGTGATCCT	GGTCTATCTGGTCAAGGTTCTTGACAGAAGTA
GTTTTACCCGCACACGCGGGGGTGATCCC	GCCGGCAAAAGCTATTCATTCCTTTTAAATTT
GTTTTACCCGCACACGCGGGGGTGATCCT	GAGTTTACTTATCTCTGGTTGGTTAACAAGTA
GTTTTACCCGCACACGCGGGGGTGATCCT	TCCAAGCGTTCTTGGATTTCCTGCTGATTAAA
GTTTTACCCGCACACGCGGGGGTGATCCT	GGTATTTTGACTGCTAGGTTTCATGGCTCGTC
GTTTTACCCGCACACGCGAGGGTGATCCT	ATTTCCTCTCGGCCAAAGCAGTGAAACGGTTA
GTTTTACCCGCACATGCGGGGGTGATCCT	GGTTTTGGGGATGCTAACTGGTACGAATACTA
GTTTTACCCGCACAGGCGGGTGTGGCATA

Protein	Signature genes	Signature genes Name	Protein_function
LS483381.1\|SQG19733.1\|838218_842883_+\|glucosyltransferase-I	unknown	unknown	gnl\|CDD\|334895
LS483381.1\|SQG19762.1\|867259_868180_+\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	unknown	unknown	gnl\|CDD\|235536
LS483381.1\|SQG19758.1\|864887_866297_+\|sensory-box-protein	unknown	unknown	gnl\|CDD\|225301
LS483381.1\|SQG19752.1\|859398_863925_+\|glucosyltransferase-I	unknown	unknown	gnl\|CDD\|334895
LS483381.1\|SQG19760.1\|866372_867257_+\|tRNA-pseudouridine-synthase-B	unknown	unknown	gnl\|CDD\|235042
LS483381.1\|SQG19764.1\|868419_868833_+\|transcriptional-regulator-Spx	unknown	unknown	gnl\|CDD\|179316
LS483381.1\|SQG19740.1\|848217_849297_+\|CRISPR-system-CASCADE-complex-protein-CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
LS483381.1\|SQG19745.1\|850684_851626_+\|CRISPR-associated-protein	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LS483381.1\|SQG19766.1\|868825_869104_+\|hypothetical-cytosolic-protein	unknown	unknown	gnl\|CDD\|179841
LS483381.1\|SQG19748.1\|853449_854805_+\|metal-ion-(Mn2+;-iron)-transporter-(Nramp-family)	unknown	unknown	gnl\|CDD\|234815
LS483381.1\|SQG19735.1\|843301_845941_+\|helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
LS483381.1\|SQG19747.1\|851627_852530_+\|DNA-polymerase-III-subunit-alpha	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
LS483381.1\|SQG19754.1\|864173_864494_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483381.1\|SQG19742.1\|849306_850032_+\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E/ECOLI	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
LS483381.1\|SQG19750.1\|854983_859093_+\|glucosyltransferase-S	unknown	unknown	gnl\|CDD\|334895
LS483381.1\|SQG19756.1\|864655_864886_+\|Domain-of-uncharacterised-function-(DUF1858)	unknown	unknown	gnl\|CDD\|378108
LS483381.1\|SQG19731.1\|837186_837780_+\|Restriction-endonuclease-S-subunit	unknown	unknown	gnl\|CDD\|341201
LS483381.1\|SQG19744.1\|850037_850688_+\|transcriptional-regulator	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
LS483381.1\|SQG19738.1\|847631_848228_+\|CRISPR-associated-Cse2-family-protein	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
LS483381.1\|SQG19736.1\|845945_847619_+\|CRISPR-system-CASCADE-complex-protein-CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189

Protein	Function_ID	Function_description	E-value
LS483381.1\|SQG19733.1\|838218_842883_+\|glucosyltransferase-I	gnl\|CDD\|334895	pfam02324, Glyco_hydro_70, Glycosyl hydrolase family 70. Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyze the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain.	0
LS483381.1\|SQG19762.1\|867259_868180_+\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	6.96068e-135
LS483381.1\|SQG19758.1\|864887_866297_+\|sensory-box-protein	gnl\|CDD\|225301	COG2461, COG2461, Uncharacterized conserved protein [Function unknown].	6.76096e-134
LS483381.1\|SQG19752.1\|859398_863925_+\|glucosyltransferase-I	gnl\|CDD\|334895	pfam02324, Glyco_hydro_70, Glycosyl hydrolase family 70. Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyze the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain.	0
LS483381.1\|SQG19760.1\|866372_867257_+\|tRNA-pseudouridine-synthase-B	gnl\|CDD\|235042	PRK02484, truB, tRNA pseudouridine synthase B; Provisional.	0
LS483381.1\|SQG19764.1\|868419_868833_+\|transcriptional-regulator-Spx	gnl\|CDD\|179316	PRK01655, spxA, transcriptional regulator Spx; Reviewed.	6.24525e-83
LS483381.1\|SQG19740.1\|848217_849297_+\|CRISPR-system-CASCADE-complex-protein-CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.49918e-156
LS483381.1\|SQG19745.1\|850684_851626_+\|CRISPR-associated-protein	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.91835e-132
LS483381.1\|SQG19766.1\|868825_869104_+\|hypothetical-cytosolic-protein	gnl\|CDD\|179841	PRK04387, PRK04387, hypothetical protein; Provisional.	8.78149e-42
LS483381.1\|SQG19748.1\|853449_854805_+\|metal-ion-(Mn2+;-iron)-transporter-(Nramp-family)	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	2.71313e-176
LS483381.1\|SQG19735.1\|843301_845941_+\|helicase	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.29643e-89
LS483381.1\|SQG19747.1\|851627_852530_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	9.47468e-40
LS483381.1\|SQG19742.1\|849306_850032_+\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E/ECOLI	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.76664e-45
LS483381.1\|SQG19750.1\|854983_859093_+\|glucosyltransferase-S	gnl\|CDD\|334895	pfam02324, Glyco_hydro_70, Glycosyl hydrolase family 70. Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyze the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain.	0
LS483381.1\|SQG19756.1\|864655_864886_+\|Domain-of-uncharacterised-function-(DUF1858)	gnl\|CDD\|378108	pfam08984, DUF1858, Domain of unknown function (DUF1858). This domain has no known function. It is found in various hypothetical bacterial proteins.	1.44722e-15
LS483381.1\|SQG19731.1\|837186_837780_+\|Restriction-endonuclease-S-subunit	gnl\|CDD\|341201	cd17520, RMtype1_S_HmoORF3075P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Heliobacterium modesticaldum Ice1 S subunit (S1.HmoORF3075P) TRD1-CR1. The recognition sequence of Heliobacterium modesticaldum Ice1 S subunit (S1.HmoORF3075P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This subfamily also includes the TRD-CR-like sequence-recognition domain of type I N6-adenine DNA methyltransferase (M) subunit of Clostridium intestinale URNW (M2.CinURNWORF2828P). The recognition sequence of M2.CinURNWORF2828P is undetermined. Type I methyltransferases included in this group include two domains: one for methylation, and another (TRD-CR-like) for sequence-recognition.	6.12071e-45
LS483381.1\|SQG19744.1\|850037_850688_+\|transcriptional-regulator	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.81157e-69
LS483381.1\|SQG19738.1\|847631_848228_+\|CRISPR-associated-Cse2-family-protein	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	9.95823e-39
LS483381.1\|SQG19736.1\|845945_847619_+\|CRISPR-system-CASCADE-complex-protein-CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.7905e-83

>LS483381.1|SQG19747.1|851627_852530_+|DNA-polymerase-III-subunit-alpha
MPFTVITVKNAPPSLRGDLTKWMQEIATGVYVGNFNTKVREQLWNRVENSVGHGEATISYSFRNEIGYQFATINAQREVVDYDGIPLVLLPSQAKDVGKNVALGFSNAAKFRKIKRYTSSSQSHVQSTVPYAVIDIETDGLDENEHTIIEIAAVKVSGLQIEDFDYLIKYDKVLPKNIVSLTGISQELLNQNGKDIQVVLQEFLNFIGDFDLVGYGVGFDIKFINNELRKLGYPLLENKVHDLMKYVKNEKLFLDNYKLQTALKVYGIEGEVPHRALPDSRLIYQLSTKVNKFLKRINQK
>LS483381.1|SQG19745.1|850684_851626_+|CRISPR-associated-protein
MKEKFGAKKTSLKELPKISDRVSFIYVEHAKINRVDSAITVADSKGIVRIPAAMLGVLLLGPGTDISHRAVELIGDTGTSMIWVGEHGVRQYAHGRSLAHSTRFLEKQAKLVSNSRSRLRVARKMYQMRFPNEDVSGLTMQQLRGREGARIRKVYSLQAKKYNIPWTKRDYNPENFEDGTPVNQALSAANVALYGLVHSIIVALGASPGLGFVHTGHDLSFVYDVADLYKAETTIPIAFEIAANCQPGDDIGKITRLKVRDSFVDGKLMIQIVKDLQNLLDIEESEELVVDILALWDDKERLVKHGVSYREDS
>LS483381.1|SQG19744.1|850037_850688_+|transcriptional-regulator
MYISRVEIDKNNRRKIKDLKNIESYHGWVEQSFPKEIEQNIRTRKLWRVDQLQGHYYLIIISLEKPDLKLLEKYGVRNSAQTKSYDTFLNSLKEGEVMRFRVVLNPVISLPSRDGNHKRGVVKPHTTIKHQMNYLLNRSEKNGFLLEKDDFSIVERGYEVFNKGNSKPIRLIKAIYEGILTIDDADLFRKTLTEGIGKKKAYGFGMMTAIPLGDEK
>LS483381.1|SQG19742.1|849306_850032_+|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E/ECOLI
MKTILLKLAGPLQSWGTSSHFETRHTDFYPSKSAIIGLIAASLGYRRDEEQRLQRLNELDFAVRIDQQGNILRDYHIAQKYKSKGEFERTYVTNRYYLEDAIFIVAISHEDDELMSAIEKGLKNPYFQTFMGRRSLPLNADFIVETTSDSALESLKRLKWQAAEWFMSKHSHETSITLEIYADSFLSDKESNRLRQDRVISFSQKARKFGFRYEVRDLVDVSNPMAKKGETQHDIFSSIGD
>LS483381.1|SQG19740.1|848217_849297_+|CRISPR-system-CASCADE-complex-protein-CasC
MTNNQHLFLDIHAIQTLPPSNINRDDTGSPKTAQYGGVRRARVSSQSWKRAIREYFSDNGQQSNVGVRTKDIVRYVADKIIGLDQSISLEDALQKADKVLNGAGVKTKDFKAKALFFLSDVQAKKLAQAAINDVSDKKELHEVLTSSPAIDIALFGRMVADDPSLNEDASSQVAHAISTHAVQTEFDFYTAVDDLAPEDNAGAGMLGTIEFNSSTLYRYANVAVHELLKQLGDKESLVNSLSLFIEAFAKSLPTGKATSFANQTLPQALVVTLRNDRPISLVSAFEKPVKSSEGYVTKSIEKLSDEFVKVEKFVNKPVLTFYVSLEDVEKLKNVGGIEKNSLSELLSDFSEELSNFIQE
>LS483381.1|SQG19738.1|847631_848228_+|CRISPR-associated-Cse2-family-protein
MSEQRKARVAEVTRKILIKLSKQKDTSSGKALLARLRQSIGKPVSETVAVWPILFEDLPEEFLGHDGYTSAEEQAILTTLQLYALHQQSLSHSVFIGEENKYQNIGNSFRQLRQGEDTTAIDRRFNVMITASTFEELVYHLRHLITLLKSKSPETKVDYARLSEDLYWFLRDYQERVRLSWARDYYKRNFKGEKDNDK
>LS483381.1|SQG19736.1|845945_847619_+|CRISPR-system-CASCADE-complex-protein-CasA
MSRFNLLDEPWLSVVVDDKGSTKEVSLLDLFINAHQYKDLAGDTKTQDFAVLRVLLAVLHTVFSRFDADGNPYDYLEIDERFRQIEEVEEDDIDKYEEDLYDTWTNLWEQGKFPEIISQYLEKWRDRFYLFDDDYPFFQVKMKVLQKKFDLSNKLGELTGKTMNRLISESGNKAALFSPRADLDNNKEKLSEPEIVRWLLTYHSSTEVGGRLKSLGSTTSSGWLFRKGGIYFKGTNLFETLLMNCILPYKEYNNLKHTQKPCWEYEYLEIIQNYFDEVEPDNIASLYTTWSKGVDIDAKLNLPYFKCNIIKLPSINCEDYFLEPMTLWKYQDKIGKFIPKEHTINQSLWRSFGLLTENSSGKNYRTPGVINWFREIKNEIAKDKLVSICAVGVEMKSDANHTISDEITDYLFINEFVLADLEEGGWIPRINDTVEETKKVISRTYKRYIDDIKEIRKARSDLFTSQKVEELYFKIDQPFRQWLASLQPNDEKDTRVLEWREILDELVREEAELTLHSGGPRDYIGIVKRDPNKDSSEFINIATAYNKFNYCLNQNLK
>LS483381.1|SQG19735.1|843301_845941_+|helicase
MDSLETDHETDNLGKRTIQFLAAVHDIGKATPAFQTQKGYSNSEDLDLRLLEKLERSGFEGISSLQLASPRKSHHSVAGQYLLYTYGLKEDITTIIGGHHGKPIDSIDDYNCQGKSYPSNYFQFEESENRAVYQKWKQTQRNIFSWALKVSGFETIEALPKIKQPAQVLLSGLLIMADWIASNEHYFPLISIDDAKVKDESKRTPHGFQKWKKTSLWEPEIIINFKGAYKERFGFDPREVQIALADIIANTHNPGIFILEAPMGVGKTEAALIAAEQLAAKRGRNGLFFGLPTQATSNGIFPRIENWLESIQGDLEENISIHLVHGKAQLNEDFDRLRLAENINIDEADSGSVIVNEWFSGRKTASLDDFVVGTVDQFLMVALKQKHLALRHLGFSKKVVIIDEVHAYDAYMNQYLLEAIRWMGAYGVPVVILSATLPAERRVELLKNYMLGLGKEFNKKERRQLAETLKTEAYPLITYNDGFEVCQRKGFQQTKNKNITVQRLNEESLLETVERELSDGGVVGLIVNTVKRAQELAKSFVEKFGEDMVELLHSGFIATQRTQKEKDLLQIIGKNAKRPKRKIIIGTQVIEQSLDIDFDVLISDLAPMDLLIQRMGRLHRHDIKRPVKHMLPRFYVLGTSESLDFEEGSSFVYGDYLLARTQYFLPDTISLPEDISPLVQKVYNFNLKDDCDQNINLADDLRAKYLEARKRYKAKMEAKKSKAKNYRIDNPVLKPSRKRPESLIGWIKNPNPDESEEKAYAQVRDIEDTIEVIALKRLESGYGLFGENQDISSNITDFKIAKKVAQNTSRLPLTLSKSYNVDKTIEELEKYYRRHFENWDNSSWLKGTLGIVFNENNEFILNGFKLSYDEKYGIQVERV
>LS483381.1|SQG19733.1|838218_842883_+|glucosyltransferase-I
MEKKLHYKLHKVKKHWVTIAVASIGLVSLVGAGTVSAEDKVANDTTAQATVGVDTGQGQATTNDANTNTTDTDTSDQSANTNQDQAGSNQSNNQDQAKQDTANTDQNQADNSQTDNNQATDQATSPATDGTSVQRRDAANVATAADQEGQTDPSEQEKSAALSLDNVKLIDGKYYYIQADGSYKKNFAITVNGQMLYFDSDTGALSSTSTYSFSQGTTNLVDDFSSHNKAYDSTAKSFELVNGYLTANSWYRPVDILRNGQTWEASNENDLRPVLMSWWPDKDTQVAYVNYMNKYLSANETEVTNETSQVDLNKEAQSIQTKIEQKITSDNSTQWLRTAMEAFVAAQPKWNMSTENFNKGDHLQGGALLYTNSDLTPWANSDYRLLNRTPTQQDGTKKYFTEGGEGGYEFLLSNDVDNSNPVVQAEQLNQLHYLMNWGDIVLGDKDANFDGVRVDAVDNVNADLLQVYSNYFKDNYKVTDSEANALAHISILEAWSLNDNQYNEDTNGTALSIDNSSRLTSLAVLTKQPGQRLDLSNLISESVNKERANDTAYGDTIPTYSFVRAHDSEVQTVIAKIVKEKIDTNSDGYTFTLDQLKDAFKIYNEDMAKVNKTYTHYNIPAAYALLLSNMESVPRVYYGDLYTDDGQYMAKKSPYYDAIATMLQGRIAYVSGGQSEEVHKVNGNNQILSSVRYGQDLMSADDTQGTDLSRTSGMVTLVSNDPNLNLGSDSLTVNVGKAHANQAYRPLILGTKDGVQSYLKDSDTNIVKYTDANGNLTFTADDIKGYSTVDMSGYLAVWVPVGAKDGQDVRVAADTNQKADGKSLKTSAALDSQVIYEGFSNFQDFANNDADYTNKKIAENADFFKKLGITSFEMAPQYVSATDGSFLDSIIENGYAFSDRYDLAMSKNNKYGSKDDLANALKALHANGIQAIADWVPDQIYQLPGEEVVTAKRTNSYGKPTFDAFINNTLYAANTKSSGSDYQAQYGGAFLDELKAKYPDMFSVNMISTGKPIDSSTKIKQWEAKYFNGTNVLGKGAGYVLSDDATGKYFTVNENGDFLPASFTGDQNAKTGFYYDGTGMTYYSTSGNKAVDSFVYEGGHYYYFDKDGHMVTGSYKAVDGNDYYFLPNGIQMRDAIYQDDKGNSYYYGRTGILYKGDNWYPFTDPKNSNKTVFRYFDANNVMAIGYKDMYGQTYYFDENGYQAKGELLTDAKGTHYFDEDNGAMAKNKFVNVGDDWYYMDGNGNAVKGQYPVDNQILYFNPETGVQVKGQFITDAQGRISYYDGNSGALKSSGFFTPNGSDWYYAENGYVYKGFKQVAENQDQWYYFDQTTGKQAKGAAKVDGRDLYFNPDSGVQVKGDFATDESGNTSFYHGDNGDKVVGGFFTTGNNAWYYADNNGNLVKGFQEIDGKWYHFDEVTGQQAKGAALVNGQQLYFDVDSGIQVKGDFVTDGQGNTSYYDVNSGDKKVNGFFTTGDNAWYYADGQGNLAKGRKSIDNQDLYFDPATGKQVKGQLVSIDGRNYYFDSDSGNMAKNRFVRIGDQWIYFGNDGAATNL
>LS483381.1|SQG19731.1|837186_837780_+|Restriction-endonuclease-S-subunit
MKLIEDYLANPVKKLPLGQVARAFKGKAVSGKADPGRISYINLSDMTEFGIDYDHLKTFDDEQDKLQKYLLETGDVLVASKGTVKKVAVFEGQDFPIVASSNITVLRPIEELNGFYLKLFLESDLGQALIDTADKGKAVLNISTAQLLEIPVPQIPLVKQNYLVQYAYKGQADYERKLARAQQEWEHIKQEVAKNLF
>LS483381.1|SQG19748.1|853449_854805_+|metal-ion-(Mn2+;-iron)-transporter-(Nramp-family)
MESPKNNYRANKASLSEVNQSVAVPETASFWRTLKAFIGPGALVAVGYMDPGNWITSVVGGASYKYLLLSVVLISSLMAMQLQQMAGKLGIVTRQDLAQATANHLPVWLRYILFVIIELALMATDLAEVIGSGIALHLLFGWPLMLSIFVTILDVFLLLGLMKLGFRKIEAVVSTLIMTILLIFVYLTVISQPSISGIFKGFVPSASIFDLQQTGANSKLTLALGIIGATVMPHNLYLHSSISQTRRVDYDNPESIRRAVRFMTWDSNIQLSLAFIVNSLLLILGAALFYGHASEISAFAQMYNALADPKIAGSVASGLLSTLFAVALLTSGQNSTITGTLTGQIVMEGFVHLRLPQWFIRLVTRLLALLPVILAALIWGSREKVLDQLIVYSQVFLSLALPFSIFPLIYFTSSKKLMGEHKNAIWNTALAYGVAVILTILNIKLIIDLFQ
>LS483381.1|SQG19750.1|854983_859093_+|glucosyltransferase-S
MEKNLRYKLHKVKKQWVAIGVTTVTLSFLAGGQVVAADTNNNDGTSVQVNKMVPSDPKFDAQAQNGQLAQAMFKAANQADQTATSQVSPATDGRVDNQATPAANQPAANVANQDVANQAANAGDLNRQSAADTSTDGKALPQTKDQPGHLETVDGKTYYVDANGQRLKNYSTVIDGKTYYFDGQTGQAQTDLPKTGQDNQQNVPDSYVANNQAYSNEASSFEAVDNYLTADSWYRPRKILKNGQSWQASSEGDLRPILMTWWPDAATKAAYANFWAKEGLISGSYRQNSANLDAATQNIQVAIEKKIAAEGNTNWLRDKMSQFVKLQNQWNSASEDKTDYPNQDHLQGGALLFSNSDATPQANSDWRLLNRNPTNQTGQQKYFKTNYAGYELLLANDVDNSNPIVQAEQLNQFHYLMNWGEIVMNDKDANFDGVRVDAVDNVDADLLQIQRDYYKARYGTDQNEKNAIDHLSILEAWSGNDNDYVKDQNNFSLSIDNDQRSYMLAAFANPANKRGNYLGQLATVGLKNRTGNNNSDPVPNYVFIRAHDSEVQTRIAKIIREKLGKTNADGLTNLTLDDLNKAFDIYNQDMNSVDKQYYPNNLPMAYAWMLQNKDTVTRVYYGDMYTDNGQYMETKTPFYNAIEALLKGRIKYVAGGQAVGYNQWNRVLTSVRYGKGANSINDAGDATTRNSGMALLINNQPNFRANSNITLNMGAAHRNQAYRPLLLSTQNGTATYLNDSDVNSSQYKYTDGQGRLTFNASEFRGVSNVQVSGMIQVWVPVGAAADQDVRTAPSTSATRDGNIYHQSDALDSQVIYEGFSNFQAFAQNPDQYTNAVIAKNADLFKSWGITQFEMAPQYVSSEDGTFLDSVIFNGYAFSDRYDLAMSKNNKYGSKQDLANAIKGLHAAGIKVLADWVPDQMYNLPGKEVVTATRVDEYGRTRSGATINKTPYVVNTKTYGDYQEQYGGKFLNDLQKLYPSLFTTKQISTGKPIDPSVKITNWSAKYFNGSNILGRGAKYVLSEGNKYLNLTGGKLFLPTVLNNTYGQPQASSKGFVSKADGIHYLDENGQEVKNQFKEIAGSWYYFDANGKMATGQTKVGDDTYLFMPNGKQLKEGILYDGNKAYYYDNNGRTWTNKGFVEFRVNGQDKWRYFNGDGSIAIGLVTLDNRTLYFDAYGYQVKGQTVTINGKSYTFDADQGDLEKTDNQDNPNPAPDNQGGWESLGDNQWGYRRNGKLLTGHQTIDGHQVFFQDNGVQVKGGTAKDASGVLRFYDRDQGRQAGKGWYSTSDNNWVYVDDSGKVLTGLQDINGQTVYFDENGIQAKGKGVWDNNGGLRYFEADSGNMIRDRWKNVDGTWYYFNRDGLASYYRW
>LS483381.1|SQG19752.1|859398_863925_+|glucosyltransferase-I
MERKLHYKLHKVKKQWVTIAVASAGLASIVGAGSVGQTVSADDLAQDQSSASEQKAASDQKQEEVASDAANTASAKVTSEKEVSQASDTTSESSQVQSQDQASAKQASDLAPATKAAPQAESQAGTSTASSEAAPAASSQEVAKSTTGSVSQNEEAAALSLANIKKIDGKFYYVMADGSYKKNFAITVDGQMLYFDAKTGALSSTSTYSFSQGLTPIVSDFSVNNKAFDSSEKSFELVDGYLTAESWYRPAKILENGKTWVDSKETDLRPVLMSWWPNKDTQVAYLNYMSKALGGKEEFTTETSQLTLNTAAELIQAKIEARVSKEQGTKWLREAMAAFVATQSRWNKDSEQYDKADHLQGGALLYTNNNLTEWANSNWRLLNRTPTRQDGKTHYSKADKYGGYEFLLANDVDNSNPVVQAEMLNQIHYLMNWGEIVMGDKNANFDGIRVDAVDNVNADTLQLYTNYFNSVYGVNKSEAQALAHISVLEAWSYNDNDYNQDTNGAALAMDNGLRFSLLYTLTRPINERTPGMSTLIKSEYGLTDRTKNDKYGDTQPSYVFVRAHDSEVQTVIAQIIKEKIDPTTDGFTFTLDQLKQAFEIYNKDMNSVNKHYTHYNIPAAYAVMLSNMESVTRVYYGDLFTDDGQYMASKSPYYDAINTLLRARIRYAAGGQIMEHNSYKPSAAMKAAHPDAGNVLGNSEVLVSVRFGQDVMSADDMTGGKLAKTSGMFTLISNNPELELDVNEEIKVNVGKIHAGQAYRPLLLTTDKGLQKYLNDSDTKLTKVADKDGFITFKGSEIKGYKQVEVNGYLSVWVPVGAKADQDIRVAPSTAAKGEKAKTYTASQALESQLIYEGFSNFQDFVQKDSQYTNKKIAENTDLFKAWGVTSFEMAPQYVSATDGTFLDSIIENGYAFTDRYDLAMSKNNKYGSKEDLANALKALHAAGIQAIADWVPDQIYQLPGKEVVTASRVDNYGRVKVDQPLVEKLYLANTKSSGKDFQAKYGGEFLAELQKKYPEMFTTKMISTGKTIDPSVKLKEWSAKYFNGTNVLDRGTDYVLSDEGTGKYFTVNENGDFLPASLTGNKDAKTGFYNDGKGIVYYTTAGNKAKSAFVTEAGNTYYFDYTGHMVTGPNVINTKFYYFLPNGVMLKDAIKQDEKGRSVYYGKTGVMYKGGRDNEWFAMTDSKGQMRFRHFDNYGFMSMGLVTIHGNVQYYDEEGFQVKGEFVTDKDGQTRYFDQGSGNLVKGQFLNKDGNWYYLDDQGLVAKGAQTIKGQKLYFDTKTGVQVKGDFVTDKDGNTFFYSGDTGDLILGQFFSTGNNAWFYADENGHVAKGAKTIRGQKLYFDTKTGQQAKGRFIRDDKGVRYYDADTGTLVTNAFLETKAGSNQWYYMGADGYAVKGNQTIKNQHMHFDAETGQQAKGIIVTDANGRKYFYDTFTGSRVVNQFVLVNGNWYFFGYDGAAVTGFHDIKGQHLYFNSDGTQAKGTTVKIGNRSYTFDAHTGELTSVHYG
>LS483381.1|SQG19754.1|864173_864494_+|Uncharacterised-protein
MKSPIKKILFTSALVAAIFAAGSSVSALGVTETNRYGRAENPNLHRTFYDYNVHNMDINGNPIQEQGTDFSQYYWRGDESGSTTSYDENTHVTTTITYTVRYWEAK
>LS483381.1|SQG19756.1|864655_864886_+|Domain-of-uncharacterised-function-(DUF1858)
MTNTIDLSRPVAEILEEHPELKDILLELGFKPLANPLMLKTLGRTTSLKAGSKLAKIPLEKIKQTLEFNGYEVKGD
>LS483381.1|SQG19758.1|864887_866297_+|sensory-box-protein
MAEERIEILKDILLDLHQGSSPEAVQERFDRTFKGVSALEISLMEHELMSDEKSGVTFEDVMDLCDVHANLFKNAVQGVEVADSDQPGHPVYVFKQENLALRGALLRIRRLLENLAQPENEEFQTDILKGLKNQIRLLGQFRRHYQRKEELFFPIMESYGHDSPPRVMWGVDDEIRQLFKDFQTKVEELPALEISIVRQSFEAFADEFEQMIFKEESILLMILLEIFTQDDWLKIAEESEAVGYAIVKPEEVWIPKRESFEPNQPSPADSNQLERDSKVVDEQTSKQSQANNPRPLDWDATNKQEQIIETPAGQFTLTFEPRKEALDRQVPQKFTNGYLSLDQANLILDHLPLEVTFVNKDDIFQYYNNSVSAKDMIFKRVPSQIGRNVELCHPPRVLDKVKKVFELLKTGQKDKVTMWFKSQKKGKFVYVTYAAVRDQAGEFQGVLEYVQDIQPFFDLEGDSQRDIID
>LS483381.1|SQG19760.1|866372_867257_+|tRNA-pseudouridine-synthase-B
MINGIINLKKEAGMTSHDAVFKLRKILGEKKIGHGGTLDPDVTGVLPIAVGKATRVLEYMTESGKVYEGQITLGYSTTTEDASGELVRETPVTQEQLTEEAVDQAMATFLGEITQVPPMYSAIKVNGRRLYDYARAGEEVERPHRQVTISEFARISPLSFENGLCRFDFRVACSKGTYVRTLAVDLGVELGLASHMSALRRTASAGLVLEKSFSLAEIADQLERGEADFLLPLEYGVLDLPRVELEKAQKTEISFGRFIRLDSQEAILAAFYEDRVQAILERRGYLYKPRKVLI
>LS483381.1|SQG19762.1|867259_868180_+|bifunctional-riboflavin-kinase/FMN-adenylyltransferase
MMKIIEIDSYQAIEQEEATVLVLGYFDALHRGHKVLFDKAREIAKRDQLKIAVLTFFESPKLAFARFEPDLLKHITYPEKRYAKFADYGVDYLYLTNFTTAFSQISSDDFIKDYLGQLKAKAVVVGFDYKFGHNRTDADYLARNFSGPVYTVAEVSQDGQKISSTRIRHLIAQGDVAKVNQLLGYEFSTRGIVVHGDARGRTIGFPTANLATLDRTFLPADGVYVTDVLLKGQRYRAMTSIGKNVTFGGTELRLEANIFDFSGDIYGEELEIIWLNKIREMVKFNGIDDLVDQLHQDQKIAKEWTL
>LS483381.1|SQG19764.1|868419_868833_+|transcriptional-regulator-Spx
MITLFLSPSCTSCRKARSWLTNHEVAFQEHNIITSPLSADELRAVLALTENGTEDIISTRSKVFQKLDLDVDDLSISELIDLIAKNPSLLRRPIILDKKRMQIGFNEDEIRAFLPRHYREQELRQATIRAELESDHD
>LS483381.1|SQG19766.1|868825_869104_+|hypothetical-cytosolic-protein
MTKNYSYPLDASWSTEEIASVLYFLNQVEAAYESKAKTETLLEAYRSFKRVVPSKMQEKQIDREFEKSSGYSSYRAVQAARINAGGWVSLER

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483381_1	1.1\|448605\|26\|LS483381\|CRISPRCasFinder	448605-448630	26	NZ_CP053834	Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence	159084-159109	6	0.769
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	NZ_CP018028	Alteromonas mediterranea strain CP49 plasmid MCP49-600, complete sequence	192737-192768	8	0.75
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	NZ_CP018025	Alteromonas mediterranea strain CP48 plasmid pAMCP48-600, complete sequence	192779-192810	8	0.75
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	NC_049439	Salmonella phage SenASZ3, complete genome	13096-13127	8	0.75
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	NC_016073	Salmonella phage SFP10, complete genome	89771-89802	8	0.75
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	NC_027119	Salmonella phage Det7, complete genome	22868-22899	8	0.75
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	KY000003	Salmonella phage STP07, complete genome	113270-113301	8	0.75
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	MT074475	Salmonella phage dinky, complete genome	46249-46280	8	0.75
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	MH709120	Salmonella phage SeSz-3, complete genome	13096-13127	8	0.75
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	MN871500	UNVERIFIED: Salmonella phage Se-S, complete genome	91813-91844	8	0.75
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	KX171211	Salmonella phage vB_SenM-2, complete genome	22868-22899	8	0.75
LS483381_2	2.9\|853072\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	853072-853103	32	NC_031045	Salmonella phage GG32, complete genome	128973-129004	8	0.75
LS483381_2	2.12\|853255\|32\|LS483381\|CRISPRCasFinder,CRT	853255-853286	32	MN694191	Marine virus AFVG_250M444, complete genome	25897-25928	8	0.75
LS483381_2	2.12\|853255\|32\|LS483381\|CRISPRCasFinder,CRT	853255-853286	32	MN694065	Marine virus AFVG_250M443, complete genome	30835-30866	8	0.75
LS483381_2	2.3\|852705\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	852705-852736	32	NC_031062	Erwinia phage vB_EamP_Frozen, complete genome	17077-17108	9	0.719
LS483381_2	2.3\|852705\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	852705-852736	32	KX098391	Erwinia phage vB_EamP_Gutmeister, complete genome	13100-13131	9	0.719
LS483381_2	2.3\|852705\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	852705-852736	32	KX098390	Erwinia phage vB_EamP_Rexella, complete genome	16892-16923	9	0.719
LS483381_2	2.3\|852705\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	852705-852736	32	KF806588	Erwinia phage Ea9-2, complete genome	17499-17530	9	0.719
LS483381_2	2.6\|852889\|32\|LS483381\|PILER-CR,CRISPRCasFinder,CRT	852889-852920	32	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	336350-336381	10	0.688
LS483381_2	2.12\|853255\|32\|LS483381\|CRISPRCasFinder,CRT	853255-853286	32	LC494302	Escherichia phage SP27 DNA, complete genome	312993-313024	10	0.688
LS483381_2	2.12\|853255\|32\|LS483381\|CRISPRCasFinder,CRT	853255-853286	32	MK817115	Escherichia phage vB_EcoM_phAPEC6, complete genome	163545-163576	10	0.688
LS483381_2	2.12\|853255\|32\|LS483381\|CRISPRCasFinder,CRT	853255-853286	32	NC_027364	Escherichia phage PBECO 4, complete genome	317674-317705	10	0.688
LS483381_2	2.12\|853255\|32\|LS483381\|CRISPRCasFinder,CRT	853255-853286	32	MH383160	Escherichia phage UB, complete genome	30812-30843	10	0.688
LS483381_2	2.12\|853255\|32\|LS483381\|CRISPRCasFinder,CRT	853255-853286	32	MK327931	Escherichia phage vB_EcoM_G17, complete genome	188849-188880	10	0.688
LS483381_2	2.12\|853255\|32\|LS483381\|CRISPRCasFinder,CRT	853255-853286	32	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	254502-254533	10	0.688
LS483381_2	2.12\|853255\|32\|LS483381\|CRISPRCasFinder,CRT	853255-853286	32	KM507819	Escherichia phage 121Q, complete genome	313629-313660	10	0.688

1. spacer 1.1|448605|26|LS483381|CRISPRCasFinder matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 6, identity: 0.769

tttcatttccaacttttgacagtctc	CRISPR spacer
tttcatttacaacttttgacatctct	Protospacer
******** ************ ....

2. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018028 (Alteromonas mediterranea strain CP49 plasmid MCP49-600, complete sequence) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
ggcaagcgttctttcatttcctgctcagccaa	Protospacer
  ***********  ********** * . **

3. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018025 (Alteromonas mediterranea strain CP48 plasmid pAMCP48-600, complete sequence) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
ggcaagcgttctttcatttcctgctcagccaa	Protospacer
  ***********  ********** * . **

4. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to NC_049439 (Salmonella phage SenASZ3, complete genome) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
tccaagcgttggtggatttcctgaaaaccaat	Protospacer
**********  ***********  .*..**

5. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to NC_016073 (Salmonella phage SFP10, complete genome) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
tccaagcgttggtggatttcctgaaaaccaat	Protospacer
**********  ***********  .*..**

6. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to NC_027119 (Salmonella phage Det7, complete genome) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
tccaagcgttggtggatttcctgaaaaccaat	Protospacer
**********  ***********  .*..**

7. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to KY000003 (Salmonella phage STP07, complete genome) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
tccaagcgttggtggatttcctgaaaaccaat	Protospacer
**********  ***********  .*..**

8. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to MT074475 (Salmonella phage dinky, complete genome) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
tccaagcgttggtggatttcctgaaaaccaat	Protospacer
**********  ***********  .*..**

9. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to MH709120 (Salmonella phage SeSz-3, complete genome) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
tccaagcgttggtggatttcctgaaaaccaat	Protospacer
**********  ***********  .*..**

10. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to MN871500 (UNVERIFIED: Salmonella phage Se-S, complete genome) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
tccaagcgttggtggatttcctgaaaaccaat	Protospacer
**********  ***********  .*..**

11. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to KX171211 (Salmonella phage vB_SenM-2, complete genome) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
tccaagcgttggtggatttcctgaaaaccaat	Protospacer
**********  ***********  .*..**

12. spacer 2.9|853072|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to NC_031045 (Salmonella phage GG32, complete genome) position: , mismatch: 8, identity: 0.75

tccaagcgttcttggatttcctgctgattaaa	CRISPR spacer
tccaagcgttggtggatttcctgaaaaccaat	Protospacer
**********  ***********  .*..**

13. spacer 2.12|853255|32|LS483381|CRISPRCasFinder,CRT matches to MN694191 (Marine virus AFVG_250M444, complete genome) position: , mismatch: 8, identity: 0.75

ggttttggggatgctaactggtacgaatacta	CRISPR spacer
tatacttgggatgataactggtacgaagacga	Protospacer
 .* .* ****** ************* ** *

14. spacer 2.12|853255|32|LS483381|CRISPRCasFinder,CRT matches to MN694065 (Marine virus AFVG_250M443, complete genome) position: , mismatch: 8, identity: 0.75

ggttttggggatgctaactggtacgaatacta	CRISPR spacer
tatacttgggatgataactggtacgaagacga	Protospacer
 .* .* ****** ************* ** *

15. spacer 2.3|852705|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to NC_031062 (Erwinia phage vB_EamP_Frozen, complete genome) position: , mismatch: 9, identity: 0.719

agaataccatccacctgagtagtagcgagagg	CRISPR spacer
cacgtaccatccacctgagcagtagggatatc	Protospacer
 . .***************.***** ** *

16. spacer 2.3|852705|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to KX098391 (Erwinia phage vB_EamP_Gutmeister, complete genome) position: , mismatch: 9, identity: 0.719

agaataccatccacctgagtagtagcgagagg	CRISPR spacer
cacgtaccatccacctgagcagtagggatatc	Protospacer
 . .***************.***** ** *

17. spacer 2.3|852705|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to KX098390 (Erwinia phage vB_EamP_Rexella, complete genome) position: , mismatch: 9, identity: 0.719

agaataccatccacctgagtagtagcgagagg	CRISPR spacer
cacgtaccatccacctgagcagtagggatatc	Protospacer
 . .***************.***** ** *

18. spacer 2.3|852705|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to KF806588 (Erwinia phage Ea9-2, complete genome) position: , mismatch: 9, identity: 0.719

agaataccatccacctgagtagtagcgagagg	CRISPR spacer
cacgtaccatccacctgagcagtagggatatc	Protospacer
 . .***************.***** ** *

19. spacer 2.6|852889|32|LS483381|PILER-CR,CRISPRCasFinder,CRT matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.688

ggtctatctggtcaaggttcttgacagaagta	CRISPR spacer
caattatctgatcaaggttcatgacagcccaa	Protospacer
 . .******.********* ******    *

20. spacer 2.12|853255|32|LS483381|CRISPRCasFinder,CRT matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 10, identity: 0.688

ggttttggggatgctaactggtacgaatacta	CRISPR spacer
gacccgatggatgctaactggtatgaaaactt	Protospacer
*.... . ***************.*** ***

21. spacer 2.12|853255|32|LS483381|CRISPRCasFinder,CRT matches to MK817115 (Escherichia phage vB_EcoM_phAPEC6, complete genome) position: , mismatch: 10, identity: 0.688

ggttttggggatgctaactggtacgaatacta	CRISPR spacer
gacccgatggatgctaactggtatgaaaactt	Protospacer
*.... . ***************.*** ***

22. spacer 2.12|853255|32|LS483381|CRISPRCasFinder,CRT matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 10, identity: 0.688

ggttttggggatgctaactggtacgaatacta	CRISPR spacer
gacccgatggatgctaactggtatgaaaactt	Protospacer
*.... . ***************.*** ***

23. spacer 2.12|853255|32|LS483381|CRISPRCasFinder,CRT matches to MH383160 (Escherichia phage UB, complete genome) position: , mismatch: 10, identity: 0.688

ggttttggggatgctaactggtacgaatacta	CRISPR spacer
gacccgatggatgctaactggtatgaaaactt	Protospacer
*.... . ***************.*** ***

24. spacer 2.12|853255|32|LS483381|CRISPRCasFinder,CRT matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 10, identity: 0.688

ggttttggggatgctaactggtacgaatacta	CRISPR spacer
gacccgatggatgctaactggtatgaaaactt	Protospacer
*.... . ***************.*** ***

25. spacer 2.12|853255|32|LS483381|CRISPRCasFinder,CRT matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 10, identity: 0.688

ggttttggggatgctaactggtacgaatacta	CRISPR spacer
gacccgatggatgctaactggtatgaaaactt	Protospacer
*.... . ***************.*** ***

26. spacer 2.12|853255|32|LS483381|CRISPRCasFinder,CRT matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 10, identity: 0.688

ggttttggggatgctaactggtacgaatacta	CRISPR spacer
gacccgatggatgctaactggtatgaaaactt	Protospacer
*.... . ***************.*** ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

440537 : 501125

Streptococcus_phage(55.56%)

transposase,tRNA,integrase,protease

attL 462280:462295|attR 491536:491551

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG19020.1\|440537_441557_-\|integrase	integrase core domain protein	A0A2K9V2S9	Faecalibacterium_phage	1.9e-36	35.9
SQG19021.1\|441774_442551_-	TraX family protein	NA	NA	NA	NA
SQG19022.1\|442716_443019_+\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	NA	NA	NA	NA
SQG19023.1\|443018_444485_+\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit A	NA	NA	NA	NA
SQG19024.1\|444484_445927_+\|tRNA	glutamyl tRNA-Gln amidotransferase chain B	NA	NA	NA	NA
SQG19025.1\|446851_447967_+	Methionine synthase II (cobalamin-independent)	A0A218MNE0	uncultured_virus	4.5e-68	40.3
SQG19026.1\|449399_450275_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQG19027.1\|450343_451099_-	3-oxoacyl-[acyl-carrier protein] reductase	NA	NA	NA	NA
SQG19028.1\|451638_452364_+	prophage pi3 protein 59	A8ASM1	Listeria_phage	1.5e-11	38.8
SQG19029.1\|452515_453058_+	phosphoribosylformylglycinamidine	NA	NA	NA	NA
SQG19030.1\|453198_453513_-	Plasmid stabilisation system protein	NA	NA	NA	NA
SQG19051.1\|453505_453766_-	prevent-host-death family protein	NA	NA	NA	NA
SQG19054.1\|454218_454746_+	HAD superfamily hydrolase	NA	NA	NA	NA
SQG19056.1\|454745_455864_+	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA
SQG19058.1\|455879_456251_+	Predicted methylated DNA-protein cysteine methyltransferase	NA	NA	NA	NA
SQG19060.1\|456297_456609_+	ancient RNA-binding IF3-C fold protein	NA	NA	NA	NA
SQG19062.1\|456763_457396_+	nicotinate nucleotide adenylyltransferase	NA	NA	NA	NA
SQG19064.1\|457395_457989_+	HD domain-containing protein	NA	NA	NA	NA
SQG19066.1\|457994_458477_+	Uncharacterised protein	NA	NA	NA	NA
SQG19068.1\|458494_458848_+	iojap family protein	NA	NA	NA	NA
SQG19070.1\|458894_459632_+	SAM dependent methyltransferase	NA	NA	NA	NA
SQG19072.1\|459824_460922_+	putative nucleotidyltransferase	NA	NA	NA	NA
SQG19074.1\|460926_461172_+	antitoxin of toxin-antitoxin stability system	NA	NA	NA	NA
SQG19075.1\|461236_462616_+	Uncharacterised protein	NA	NA	NA	NA
462280:462295	attL	NA	NA	NA	NA
SQG19077.1\|462799_463414_+	Transcriptional regulator, MerR family	NA	NA	NA	NA
SQG19079.1\|463531_463873_+\|transposase	transposase for insertion sequence element IS629	A0A2I6AZV9	Macacine_betaherpesvirus	1.9e-25	52.2
SQG19081.1\|463956_464892_-\|integrase	putative integrase protein	W5R8L2	Staphylococcus_phage	1.1e-86	54.3
SQG19083.1\|465373_467476_+\|protease	Clp-like ATP-dependent protease, ATP-binding subunit	H6X3M6	Enterobacteria_phage	1.5e-117	37.7
SQG19084.1\|467909_468755_+	NmrA-like dehydrogenase/reductase	NA	NA	NA	NA
SQG19086.1\|468987_469362_-	Phosphoenolpyruvate-dihydroxyacetone phosphotransferase, subunit DhaM; DHA-specific IIA component	NA	NA	NA	NA
SQG19088.1\|469362_469941_-	Phosphoenolpyruvate-dihydroxyacetone phosphotransferase, ADP-binding subunit DhaL	NA	NA	NA	NA
SQG19090.1\|469979_470969_-	Phosphoenolpyruvate-dihydroxyacetone phosphotransferase, dihydroxyacetone binding subunit DhaK	NA	NA	NA	NA
SQG19092.1\|471397_472117_+	YebC/PmpR family DNA-binding regulatory protein	NA	NA	NA	NA
SQG19094.1\|472576_473572_-	MDR permease	NA	NA	NA	NA
SQG19096.1\|473740_474838_+	transcriptional regulator	NA	NA	NA	NA
SQG19098.1\|474856_475387_+	transcriptional regulator	NA	NA	NA	NA
SQG19100.1\|475590_476250_+	acetoin utilization protein	M1NSC5	Streptococcus_phage	1.0e-72	63.9
SQG19103.1\|476378_477032_+	thymidylate kinase	M1PSC7	Streptococcus_phage	1.8e-69	64.7
SQG19105.1\|477034_477898_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	3.5e-76	53.8
SQG19107.1\|477894_478695_+	signal peptidase II	NA	NA	NA	NA
SQG19110.1\|478687_479008_+	DNA replication intiation control protein	M1PFV3	Streptococcus_phage	7.9e-26	55.7
SQG19112.1\|479011_479878_+	putative S-adenosyl-methionine-dependent methyl transferase, YraL family	M1PLC5	Streptococcus_phage	2.7e-116	73.3
SQG19113.1\|480097_481333_+	ammonium transporter	NA	NA	NA	NA
SQG19115.1\|481400_481742_+	nitrogen regulatory protein P-II 1	NA	NA	NA	NA
SQG19117.1\|481963_484645_+	aconitate hydratase	NA	NA	NA	NA
SQG19119.1\|484686_485805_+	citrate synthase	NA	NA	NA	NA
SQG19120.1\|485809_486991_+	isocitrate dehydrogenase	NA	NA	NA	NA
SQG19122.1\|487548_488643_+	phosphoserine transaminase	M1Q1P2	Streptococcus_phage	1.0e-165	79.1
SQG19124.1\|488682_489231_+	GNAT family acetyltransferase	M1PSC3	Streptococcus_phage	5.5e-59	60.7
SQG19125.1\|489562_490741_+	D-3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	4.1e-176	78.2
SQG19127.1\|490817_491048_+	Uncharacterised protein	NA	NA	NA	NA
SQG19129.1\|491044_491578_+	methylated-DNA-[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	8.3e-44	52.1
491536:491551	attR	NA	NA	NA	NA
SQG19130.1\|491552_491909_+	Arsenate reductase	M1PLC0	Streptococcus_phage	6.1e-35	59.8
SQG19132.1\|492023_492887_+	MutR family transcriptional regulator	NA	NA	NA	NA
SQG19134.1\|493228_493654_+\|transposase	transposase of family protein	A0A1P8BMC0	Lactococcus_phage	2.6e-16	36.0
SQG19136.1\|494115_494265_+	Uncharacterised protein	NA	NA	NA	NA
SQG19137.1\|494824_496432_+	ABC transporter	W8CYL7	Bacillus_phage	3.0e-12	25.2
SQG19139.1\|496498_499126_+	lantibiotic synthetase protein	NA	NA	NA	NA
SQG19141.1\|499161_500430_+	prolyl oligopeptidase family protein	NA	NA	NA	NA
SQG19143.1\|500507_501125_+\|protease	protease II	NA	NA	NA	NA

DBSCAN-SWA_2

647534 : 698869

Tupanvirus(50.0%)

transposase,integrase,protease

attL 642094:642108|attR 687930:687944

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
642094:642108	attL	NA	NA	NA	NA
SQG19445.1\|647534_648554_+\|integrase	integrase core domain protein	A0A2K9V2S9	Faecalibacterium_phage	3.2e-36	35.5
SQG19447.1\|648706_650872_+	penicillin-binding protein 2B	NA	NA	NA	NA
SQG19449.1\|650944_651541_+	recombination protein RecR	NA	NA	NA	NA
SQG19451.1\|651582_652143_-	quinone family NAD(P)H dehydrogenase	NA	NA	NA	NA
SQG19453.1\|652139_652736_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
SQG19455.1\|652912_653386_+	transcriptional regulator	NA	NA	NA	NA
SQG19457.1\|653382_654621_+	BAAT / acyl-CoA thioester hydrolase	NA	NA	NA	NA
SQG19459.1\|654701_656096_-\|transposase	transposase	NA	NA	NA	NA
SQG19461.1\|656470_657517_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
SQG19464.1\|657706_658660_+	bile acid transporter	NA	NA	NA	NA
SQG19466.1\|658792_659356_-	membrane protein	NA	NA	NA	NA
SQG19467.1\|659889_661254_+	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase	NA	NA	NA	NA
SQG19469.1\|661277_661958_+	hypothetical membrane spanning protein	NA	NA	NA	NA
SQG19471.1\|662170_662473_-	role in replication	NA	NA	NA	NA
SQG19473.1\|663513_665175_+	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA
SQG19475.1\|665264_666050_+	putative tributyrin esterase	NA	NA	NA	NA
SQG19477.1\|666157_666874_+\|protease	membrane-associated proteases	NA	NA	NA	NA
SQG19480.1\|666882_667251_+	membrane protein	NA	NA	NA	NA
SQG19482.1\|667394_669323_+	ATP-binding cassette, sub-family F, member 3	A0A2K9L3Z8	Tupanvirus	8.1e-49	28.2
SQG19484.1\|669745_670714_+	Pyruvate dehydrogenase E1 component alpha subunit	NA	NA	NA	NA
SQG19486.1\|671201_672200_+	pyruvate dehydrogenase E1 component subunit beta	NA	NA	NA	NA
SQG19488.1\|672303_673701_+	branched-chain alpha-keto acid dehydrogenase E2 subunit	NA	NA	NA	NA
SQG19490.1\|673897_675655_+	dihydrolipoamide dehydrogenase	NA	NA	NA	NA
SQG19491.1\|675768_676761_+	lipoate-protein ligase	NA	NA	NA	NA
SQG19493.1\|676987_678853_+	Glucan-binding protein C	NA	NA	NA	NA
SQG19495.1\|679079_679313_+	Uncharacterised protein	NA	NA	NA	NA
SQG19497.1\|679539_681438_+	Glucan-binding protein C	NA	NA	NA	NA
SQG19499.1\|681647_682436_-	CobB/CobQ-like glutamine amidotransferase	NA	NA	NA	NA
SQG19501.1\|682435_683779_-	UDP-N-acetylmuramyl tripeptide synthase	NA	NA	NA	NA
SQG19502.1\|684101_684335_-	transglycosylase-associated membrane protein	NA	NA	NA	NA
SQG19504.1\|684920_685778_+	membrane protein	NA	NA	NA	NA
SQG19506.1\|685767_686757_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQG19508.1\|686809_688162_+	Phosphoglucosamine mutase	NA	NA	NA	NA
687930:687944	attR	NA	NA	NA	NA
SQG19509.1\|688254_688983_+	putative ribosomal small subunit pseudouridine synthase A	NA	NA	NA	NA
SQG19511.1\|689034_689160_+	membrane protein	NA	NA	NA	NA
SQG19514.1\|689217_690531_+	GTPase ObgE	NA	NA	NA	NA
SQG19516.1\|691062_691251_+	putative extracellular protein	NA	NA	NA	NA
SQG19518.1\|691381_692887_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.1e-24	23.2
SQG19520.1\|693313_694708_+\|transposase	transposase	NA	NA	NA	NA
SQG19522.1\|694820_695561_-	polar amino acid transport system ATP-binding protein	G9BWD6	Planktothrix_phage	4.4e-35	41.9
SQG19523.1\|695560_697753_-	amino acid ABC transporter amino acid-binding/permease	NA	NA	NA	NA
SQG19525.1\|697928_698168_+\|protease	CAAX amino terminal protease family protein	NA	NA	NA	NA
SQG19527.1\|698122_698869_+\|protease	CAAX amino terminal protease family protein	NA	NA	NA	NA

DBSCAN-SWA_3

907612 : 1010958

106

Streptococcus_phage(13.04%)

tRNA,transposase,holin,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG19807.1\|907612_908764_+\|holin	Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA	F2Y1V5	Organic_Lake_phycodnavirus	2.3e-14	32.7
SQG19808.1\|908763_909402_+	osmoprotectant ABC transporter	NA	NA	NA	NA
SQG19809.1\|909401_910337_+	ABC transporter	NA	NA	NA	NA
SQG19810.1\|910337_911003_+\|holin	Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD	NA	NA	NA	NA
SQG19811.1\|911301_912672_+	NADH oxidase H2O-forming	NA	NA	NA	NA
SQG19812.1\|913005_913995_-	lactate dehydrogenase	NA	NA	NA	NA
SQG19814.1\|914200_916669_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	1.7e-104	33.5
SQG19815.1\|916655_917432_+	sortase	NA	NA	NA	NA
SQG19816.1\|917854_918232_-	Uncharacterised protein	NA	NA	NA	NA
SQG19817.1\|918308_920027_-	putative phosphoglucomutase	A0A1X9I671	Streptococcus_phage	3.7e-263	79.9
SQG19818.1\|920709_921282_-	membrane protein	NA	NA	NA	NA
SQG19819.1\|921265_921820_-	phosphopantothenoylcysteine decarboxylase	Q9J5A8	Fowlpox_virus	3.3e-27	36.1
SQG19820.1\|921812_922499_-	phosphopantothenate--cysteine ligase	NA	NA	NA	NA
SQG19821.1\|922676_924347_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA
SQG19823.1\|925152_926472_+	Putative Dihydrolipoamide dehydrogenase; Mercuric ion reductase; PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-100	45.1
SQG19824.1\|926711_928232_+	cardiolipin synthetase (Cardiolipin synthase) (CL synthase)	NA	NA	NA	NA
SQG19825.1\|928540_929275_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG19826.1\|929382_929907_+	Uncharacterised protein	NA	NA	NA	NA
SQG19827.1\|930165_931242_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
SQG19828.1\|931593_932541_+	dihydrodipicolinate synthase	NA	NA	NA	NA
SQG19829.1\|932728_933067_+	oxygen-sensitive ribonucleoside-triphosphate reductase	A0A248SK58	Salicola_phage	4.8e-05	34.5
SQG19830.1\|933386_934667_-	GntR family aminotransferase	A0A1X9I5H2	Streptococcus_phage	2.1e-109	52.6
SQG19832.1\|934782_935289_+	Predicted membrane protein	NA	NA	NA	NA
SQG19833.1\|935420_936272_+	GTPase YlqF	NA	NA	NA	NA
SQG19834.1\|936258_937026_+	ribonuclease HII	R4THQ2	Phaeocystis_globosa_virus	1.0e-23	40.3
SQG19835.1\|937227_937644_+	acetyltransferase	NA	NA	NA	NA
SQG19836.1\|937684_939172_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQG19837.1\|939380_940220_+	DNA processing Smf protein	S6BFL3	Thermus_phage	9.4e-34	44.8
SQG19838.1\|941195_943340_+	DNA topoisomerase I	A0A1V0SCS0	Indivirus	4.1e-102	36.8
SQG19840.1\|943503_944883_+	Uncharacterised protein	NA	NA	NA	NA
SQG19841.1\|945073_945688_+	lipase/acylhydrolase	NA	NA	NA	NA
SQG19842.1\|947005_947845_+	hydrolase	NA	NA	NA	NA
SQG19843.1\|948049_948721_+	aminocarboxymuconate-semialdehyde decarboxylase	NA	NA	NA	NA
SQG19844.1\|949101_949335_+	Uncharacterised protein	NA	NA	NA	NA
SQG19845.1\|949439_949628_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG19846.1\|950040_950544_+	acid phosphatase	NA	NA	NA	NA
SQG19847.1\|950658_951402_+	response regulator	NA	NA	NA	NA
SQG19849.1\|951404_952751_+	histidine kinase of the competence regulon, ComD	NA	NA	NA	NA
SQG19850.1\|952868_953642_-	BlpC ABC transporter	NA	NA	NA	NA
SQG19851.1\|953654_955802_-	competence factor transporting ATP-binding protein/permease ComA	W8CYL7	Bacillus_phage	4.2e-38	28.0
SQG19853.1\|956118_956310_+	Bacteriocin class II with double-glycine leader peptide	NA	NA	NA	NA
SQG19854.1\|956366_956558_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
SQG19855.1\|956585_956771_+	Uncharacterised protein	NA	NA	NA	NA
SQG19857.1\|957115_957376_-\|transposase	IS1191, transposase, IS256 family	NA	NA	NA	NA
SQG19858.1\|957400_957829_-\|transposase	truncated IS1191 transposase	A0A0N9STL0	Staphylococcus_phage	1.2e-08	30.3
SQG19859.1\|957853_958177_-	Transposase for insertion sequence element IS905B	A0A0N9STL0	Staphylococcus_phage	1.8e-09	31.2
SQG19860.1\|958652_959057_+	Uncharacterised protein	NA	NA	NA	NA
SQG19861.1\|959106_960141_+\|bacteriocin	putative bacteriocin	NA	NA	NA	NA
SQG19862.1\|960424_960850_+\|transposase	IS200 family transposase	A0A1P8BMC0	Lactococcus_phage	3.8e-15	34.4
SQG19863.1\|961213_961477_+	Uncharacterised protein	NA	NA	NA	NA
SQG19864.1\|961713_962154_+	Uncharacterised protein	NA	NA	NA	NA
SQG19865.1\|962276_962567_+	Enterocin A Immunity	NA	NA	NA	NA
SQG19867.1\|962602_962899_+\|bacteriocin	putative bacteriocin immunity protein	NA	NA	NA	NA
SQG19868.1\|963457_963922_+	membrane protein	NA	NA	NA	NA
SQG19870.1\|964342_965494_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG19872.1\|965499_966204_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.3e-32	38.9
SQG19873.1\|966216_967458_+	ABC transporter permease	NA	NA	NA	NA
SQG19874.1\|967936_969157_+	PTS cellobiose-specific IIC component	NA	NA	NA	NA
SQG19876.1\|969140_969986_+	cell surface hydrolase (putative)	NA	NA	NA	NA
SQG19878.1\|970050_970863_+	putative oxidoreductase	NA	NA	NA	NA
SQG19879.1\|971208_971556_-	SnoaL-like domain	NA	NA	NA	NA
SQG19881.1\|971654_971966_+	transcriptional regulator	NA	NA	NA	NA
SQG19882.1\|972131_972404_+	30S ribosomal protein S16	NA	NA	NA	NA
SQG19884.1\|972415_972655_+	RNA binding protein	NA	NA	NA	NA
SQG19886.1\|973241_973886_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG19888.1\|973882_974416_+	transcriptional regulator	NA	NA	NA	NA
SQG19890.1\|974447_975425_+	Uncharacterised protein	NA	NA	NA	NA
SQG19892.1\|976266_976470_-	CsbD-like protein	NA	NA	NA	NA
SQG19893.1\|976658_977483_-\|transposase	ISSth1, transposase (orf2), IS3 family	A0A1B1P773	Bacillus_phage	1.6e-17	33.9
SQG19894.1\|977479_978166_-\|transposase	transposase	NA	NA	NA	NA
SQG19895.1\|978207_978669_-	Protein of uncharacterised function (DUF3290)	NA	NA	NA	NA
SQG19896.1\|979215_979737_+	16S_rRNA processing protein RimM	NA	NA	NA	NA
SQG19897.1\|979726_980467_+\|tRNA	tRNA (guanine-N(1)-)-methyltransferase	NA	NA	NA	NA
SQG19898.1\|980459_981458_+	thioredoxin reductase	Q9JRK7	Streptococcus_phage	1.4e-31	54.0
SQG19899.1\|982152_982869_+	putative acetyltransferase	NA	NA	NA	NA
SQG19900.1\|983274_983988_+	DeoR family transcriptional regulator, fructose operon transcriptional repressor	NA	NA	NA	NA
SQG19901.1\|983984_984896_+	1-phosphofructokinase	NA	NA	NA	NA
SQG19902.1\|984892_986851_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA
SQG19903.1\|987017_987713_+	putative DNA repair protein	A0A1B2LRS6	Wolbachia_phage	1.1e-14	26.1
SQG19904.1\|987854_988547_-	glutamine amidotransferase	NA	NA	NA	NA
SQG19905.1\|988627_989266_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
SQG19906.1\|989544_989892_-	cysteine desulfurase	NA	NA	NA	NA
SQG19907.1\|989901_991023_-	cysteine desufurase	A0A1X7QGF3	Faustovirus	8.1e-25	27.2
SQG19908.1\|991024_991990_-	Ribose-phosphate pyrophosphokinase	A0A2K9L8D8	Tupanvirus	1.6e-37	35.1
SQG19909.1\|992945_993518_-	adenylate cyclase family protein	NA	NA	NA	NA
SQG19910.1\|993647_994313_+	GTP pyrophosphokinase (RelA)	NA	NA	NA	NA
SQG19911.1\|994287_995130_+	NAD kinase	NA	NA	NA	NA
SQG19912.1\|995126_996017_+	ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA
SQG19913.1\|996033_997017_+	phosphotransacetylase	NA	NA	NA	NA
SQG19914.1\|997151_997907_+	oxidoreductase	NA	NA	NA	NA
SQG19915.1\|997926_998109_+	Uncharacterised protein	NA	NA	NA	NA
SQG19916.1\|998205_998592_-	Na+ driven multidrug efflux pump	NA	NA	NA	NA
SQG19917.1\|998738_999584_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
SQG19918.1\|999779_1000670_+	lactate/malate dehydrogenase, NAD binding domain protein	NA	NA	NA	NA
SQG19919.1\|1000822_1001734_-	polysaccharide deacetylase	NA	NA	NA	NA
SQG19920.1\|1001739_1002906_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
SQG19921.1\|1003105_1003945_+	thymidylate synthase	U5J9N5	Bacillus_phage	2.1e-81	52.5
SQG19922.1\|1004028_1004550_+	dihydrofolate reductase	A0A1B2IFI7	Erwinia_phage	9.3e-16	30.7
SQG19923.1\|1004564_1004735_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQG19924.1\|1004756_1005989_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-134	59.4
SQG19925.1\|1005998_1006598_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
SQG19926.1\|1006905_1008279_+	amino acid permease	NA	NA	NA	NA
SQG19927.1\|1008332_1009304_+	homocysteine methyltransferase	NA	NA	NA	NA
SQG19928.1\|1009633_1010134_+	50S ribosomal protein L10	NA	NA	NA	NA
SQG19929.1\|1010207_1010576_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
SQG19930.1\|1010802_1010958_-\|transposase	transposase IS861 orfB	NA	NA	NA	NA

DBSCAN-SWA_4

1139084 : 1149675

Bacillus_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG20152.1\|1139084_1140191_+	transcriptional regulator	A0A2K9VDE3	Lactobacillus_phage	2.6e-76	42.1
SQG20154.1\|1140281_1141028_+	nicotinamide mononucleotide transporter	A0A1C9LW09	Vibrio_phage	3.0e-15	30.1
SQG20155.1\|1141024_1141789_+	mutT/nudix family protein	G3MA14	Bacillus_virus	2.2e-21	33.2
SQG20157.1\|1141956_1143708_-	ABC transporter permease	W8CYL7	Bacillus_phage	1.9e-57	30.2
SQG20159.1\|1143957_1145694_-	ATP-binding protein	W8CYL7	Bacillus_phage	8.4e-37	24.9
SQG20161.1\|1146031_1146418_-	Uncharacterised protein	NA	NA	NA	NA
SQG20163.1\|1146481_1148368_-	ABC transporter domain-containing protein	A0A2K9L3Z8	Tupanvirus	7.9e-65	32.5
SQG20164.1\|1148469_1149675_-\|tRNA	tRNA CCA-pyrophosphorylase	H7BUW3	unidentified_phage	6.9e-38	47.3

DBSCAN-SWA_5

1256720 : 1264116

Streptococcus_phage(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG20339.1\|1256720_1257377_-	3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	2.8e-86	68.8
SQG20340.1\|1257405_1258566_-	putative SAM-dependent methyl transferase	W6LLI2	Streptococcus_phage	6.9e-152	69.1
SQG20341.1\|1258683_1260837_+	membrane-bound sulfatase	W6LM83	Streptococcus_phage	1.6e-263	68.5
SQG20342.1\|1261101_1261719_-\|protease	CAAX amino protease	NA	NA	NA	NA
SQG20343.1\|1261887_1262202_-	phosphoribosyl-ATP pyrophosphohydrolase	NA	NA	NA	NA
SQG20344.1\|1262318_1262639_-	phosphoribosyl-AMP cyclohydrolase	A0A2H4UVM0	Bodo_saltans_virus	2.6e-08	30.8
SQG20345.1\|1262635_1263394_-	imidazole glycerol phosphate synthase subunit HisF	A0A2H4UVM0	Bodo_saltans_virus	2.8e-05	24.7
SQG20346.1\|1263396_1264116_-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	A0A2H4UVM0	Bodo_saltans_virus	2.8e-10	24.8

DBSCAN-SWA_6

1474512 : 1543833

Staphylococcus_phage(12.5%)

transposase,tRNA,integrase

attL 1475449:1475508|attR 1495700:1495794

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG20662.1\|1474512_1475448_-\|integrase	putative integrase protein	W5R8L2	Staphylococcus_phage	2.0e-85	54.0
1475449:1475508	attL	NA	NA	NA	NA
SQG20664.1\|1475660_1476482_-	esterase	NA	NA	NA	NA
SQG20666.1\|1476999_1478178_-	carbamoyl-phosphate synthase L chain, ATP binding domain	NA	NA	NA	NA
SQG20668.1\|1478340_1478994_+	hydrolase	A0A1X9I5D3	Streptococcus_phage	1.7e-67	56.2
SQG20670.1\|1479596_1480514_-\|transposase	ISSag8, transposase	A0A1X9I5T2	Streptococcus_phage	1.1e-125	69.6
SQG20673.1\|1480641_1483323_-	ions and phospholipids transporting ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	2.0e-69	28.9
SQG20675.1\|1483538_1484708_-	sialidase B (Neuraminidase B)	NA	NA	NA	NA
SQG20677.1\|1484762_1485662_-	4-hydroxythreonine-4-phosphate dehydrogenase 2	NA	NA	NA	NA
SQG20679.1\|1485711_1486950_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG20681.1\|1487110_1487359_+	Propionate catabolism activator	NA	NA	NA	NA
SQG20683.1\|1487461_1488892_+	Transcriptional regulatory protein ZraR	NA	NA	NA	NA
SQG20686.1\|1489010_1489400_-	hypothetical cytosolic protein	NA	NA	NA	NA
SQG20688.1\|1489529_1490822_+	phosphohydrolase	E3T4P8	Cafeteria_roenbergensis_virus	7.7e-27	31.8
SQG20690.1\|1491435_1492245_+	phosphatase yidA	NA	NA	NA	NA
SQG20692.1\|1492244_1493459_+	peptidoglycan branched peptide synthesis protein, serine/alanine adding enzyme	NA	NA	NA	NA
SQG20696.1\|1493455_1494688_+	peptidoglycan branched peptide synthesis protein, alanine adding enzyme	NA	NA	NA	NA
SQG20699.1\|1494763_1495699_-\|integrase	putative integrase protein	W5R8L2	Staphylococcus_phage	4.5e-85	54.0
SQG20701.1\|1496045_1496210_+	Uncharacterised protein	NA	NA	NA	NA
1495700:1495794	attR	NA	NA	NA	NA
SQG20703.1\|1496512_1497175_+	RevS (revS)	NA	NA	NA	NA
SQG20705.1\|1497284_1498043_-	triosephosphate isomerase	NA	NA	NA	NA
SQG20708.1\|1498140_1498875_-	Histidinol phosphatase and related hydrolases ofthe PHP family	NA	NA	NA	NA
SQG20711.1\|1499826_1500585_+	N-acetylmuramidase	Q9ZXE4	Bacillus_phage	1.4e-17	40.5
SQG20713.1\|1500692_1502123_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
SQG20716.1\|1502345_1504079_-	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
SQG20718.1\|1504083_1504347_-	Phosphotransferase system, phosphocarrier protein HPr	NA	NA	NA	NA
SQG20721.1\|1504870_1505095_+	ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit	A0A0M7REK7	Lactobacillus_phage	5.9e-12	44.0
SQG20724.1\|1505181_1507341_+	ribonucleotide-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	3.5e-258	61.8
SQG20727.1\|1507807_1508767_+	ribonucleotide-diphosphate reductase, subunit beta	A0A096XT60	Enterococcus_phage	5.9e-125	68.9
SQG20729.1\|1508929_1509292_+	effector of murein hydrolase LrgA	NA	NA	NA	NA
SQG20731.1\|1509295_1509991_+	murein hydrolase export regulator	NA	NA	NA	NA
SQG20734.1\|1510245_1510407_+	Uncharacterised protein	NA	NA	NA	NA
SQG20743.1\|1510646_1511777_-	acetylornithine aminotransferase	A0A1V0SKB7	Klosneuvirus	1.7e-22	27.0
SQG20745.1\|1511826_1512561_-	acetylglutamate kinase	NA	NA	NA	NA
SQG20746.1\|1512781_1513975_-	glutamate N-acetyltransferase/amino-acid acetyltransferase	NA	NA	NA	NA
SQG20748.1\|1514048_1515071_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
SQG20750.1\|1515315_1515840_-	lipoprotein	NA	NA	NA	NA
SQG20752.1\|1516188_1517088_+\|transposase	transposase IS1239	H7BWC8	unidentified_phage	5.9e-34	34.4
SQG20754.1\|1517164_1518820_-	DNA repair ATPase	NA	NA	NA	NA
SQG20757.1\|1518833_1519304_-	argR1, arginine repressor	NA	NA	NA	NA
SQG20759.1\|1519290_1520118_-	putative hemolysin	NA	NA	NA	NA
SQG20761.1\|1520110_1520977_-	dimethylallyltransferase	NA	NA	NA	NA
SQG20763.1\|1520969_1521194_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
SQG20765.1\|1521168_1522512_-	exodeoxyribonuclease VII large subunit	L7RDW5	Acanthamoeba_polyphaga_moumouvirus	4.2e-36	31.3
SQG20768.1\|1523008_1523836_-	Uncharacterised protein	NA	NA	NA	NA
SQG20770.1\|1524148_1524361_-\|tRNA	bacterial seryl-tRNA synthetase related protein	NA	NA	NA	NA
SQG20772.1\|1524600_1525890_-	peptidase, U32 family	Q6DW11	Phage_TP	7.9e-40	32.2
SQG20774.1\|1527172_1527406_-	Uncharacterised protein	NA	NA	NA	NA
SQG20776.1\|1527472_1527712_-	Uncharacterised protein	NA	NA	NA	NA
SQG20779.1\|1528606_1529611_+	putative methyltransferase	NA	NA	NA	NA
SQG20781.1\|1529795_1530680_-	malolactic fermentation system transcriptional regulator	NA	NA	NA	NA
SQG20784.1\|1530835_1532458_+	malate dehydrogenase	NA	NA	NA	NA
SQG20786.1\|1532477_1533749_+	malate transporter	NA	NA	NA	NA
SQG20790.1\|1533805_1534057_-	Uncharacterised protein	NA	NA	NA	NA
SQG20792.1\|1534084_1534450_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG20794.1\|1534731_1536300_-	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.6e-58	37.7
SQG20796.1\|1536669_1541370_-	cell surface antigen	NA	NA	NA	NA
SQG20798.1\|1541787_1542360_+	putative proton-coupled thiamine transporter YuaJ	NA	NA	NA	NA
SQG20800.1\|1542550_1543000_+\|transposase	transposase IS861 orfA	NA	NA	NA	NA
SQG20802.1\|1543224_1543833_+\|transposase	transposase IS861 orfB	A0A2I6AZV9	Macacine_betaherpesvirus	2.6e-49	51.0

DBSCAN-SWA_7

1609733 : 1617782

Staphylococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG20887.1\|1609733_1610516_+	ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA	A0A2H4PQG7	Staphylococcus_phage	2.4e-15	26.7
SQG20889.1\|1610734_1611283_-	SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	1.8e-33	39.0
SQG20890.1\|1611279_1612212_-	putative radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.1e-35	49.3
SQG20891.1\|1612644_1613658_+\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	4.6e-112	69.8
SQG20892.1\|1613779_1614349_-	nickel-cobalt-cadmium resistance protein; NccN	NA	NA	NA	NA
SQG20893.1\|1614452_1615103_-	abpB-like dipeptidase lipoprotein	NA	NA	NA	NA
SQG20894.1\|1615099_1615489_-	putative ComB	NA	NA	NA	NA
SQG20895.1\|1615502_1615931_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.3e-09	43.6
SQG20897.1\|1615949_1617782_-	ABC transporter, ATP-binding protein ComA	W8CYL7	Bacillus_phage	2.3e-21	24.0

DBSCAN-SWA_8

1772762 : 1841040

Streptococcus_phage(21.43%)

tRNA,integrase,transposase,bacteriocin,protease

attL 1796002:1796019|attR 1849681:1849698

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG21225.1\|1772762_1773353_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	6.3e-53	54.1
SQG21227.1\|1773896_1774526_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
SQG21228.1\|1774929_1776084_-	class II aminotransferase	NA	NA	NA	NA
SQG21230.1\|1776176_1777271_-	cystathionine beta-lyase	NA	NA	NA	NA
SQG21232.1\|1777412_1778510_-	transcriptional regulator	NA	NA	NA	NA
SQG21234.1\|1778613_1779960_+	MDR permease	NA	NA	NA	NA
SQG21236.1\|1780075_1781704_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
SQG21238.1\|1782035_1783487_+	UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase	NA	NA	NA	NA
SQG21239.1\|1784036_1784822_+	iron complex transport system ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	8.0e-19	32.9
SQG21241.1\|1784843_1785770_+	iron complex transport system substrate-binding protein	NA	NA	NA	NA
SQG21243.1\|1785783_1786809_+	ferrichrome ABC transporter, permease protein	A0A2H4IY97	uncultured_Caudovirales_phage	5.3e-15	26.2
SQG21245.1\|1786808_1787804_+	iron compound ABC transporter permease	NA	NA	NA	NA
SQG21247.1\|1787938_1788586_+	Mn-dependent transcriptional regulator MntR	NA	NA	NA	NA
SQG21249.1\|1788660_1789317_-	hypothetical cytosolic protein	NA	NA	NA	NA
SQG21251.1\|1789353_1789851_-	phosphatidylethanolamine-binding protein	NA	NA	NA	NA
SQG21253.1\|1789899_1790235_-	Protein of uncharacterised function (DUF2568)	NA	NA	NA	NA
SQG21255.1\|1790241_1790823_-	transcriptional regulator	NA	NA	NA	NA
SQG21257.1\|1790812_1791550_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
SQG21258.1\|1791767_1792949_+\|transposase	transposase IS663-like	Q9MBP7	Staphylococcus_prophage	1.3e-68	38.1
SQG21260.1\|1792949_1793294_+\|transposase	transposase IS663-like	Q9MBP7	Staphylococcus_prophage	3.5e-11	33.3
SQG21262.1\|1793365_1793866_-	Uncharacterised protein	NA	NA	NA	NA
SQG21263.1\|1794116_1795052_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
SQG21265.1\|1795132_1795774_-	membrane protein	NA	NA	NA	NA
1796002:1796019	attL	NA	NA	NA	NA
SQG21267.1\|1796226_1798398_-	surface antigen	NA	NA	NA	NA
SQG21269.1\|1798563_1799139_-	lipoprotein	NA	NA	NA	NA
SQG21271.1\|1799341_1800694_-\|tRNA	TrmA family tRNA methyltransferase	A0A2K5B251	Erysipelothrix_phage	1.3e-74	34.5
SQG21272.1\|1800959_1801736_+	recombination regulator RecX	NA	NA	NA	NA
SQG21274.1\|1801841_1802375_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQG21277.1\|1814014_1814563_-	putative sigma-54 modulation protein	NA	NA	NA	NA
SQG21278.1\|1814638_1815307_-	late competence protein	NA	NA	NA	NA
SQG21280.1\|1815306_1816605_-	late competence protein	A0A1X9I5S6	Streptococcus_phage	5.0e-127	51.9
SQG21282.1\|1816651_1817290_+	Xaa-Pro dipeptidase	A0A1X9I5T8	Streptococcus_phage	2.9e-67	63.1
SQG21284.1\|1817389_1818319_+	cysteine synthase	A0A1X9I5F1	Streptococcus_phage	5.3e-139	78.8
SQG21285.1\|1818537_1818888_-	general stress protein GSP13	NA	NA	NA	NA
SQG21287.1\|1818887_1820285_-	peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.7e-24	41.3
SQG21288.1\|1820388_1821030_-	DNA-binding response regulator	NA	NA	NA	NA
SQG21290.1\|1821016_1822060_-	putative histidine kinase	NA	NA	NA	NA
SQG21291.1\|1822056_1822755_-	membrane protein	NA	NA	NA	NA
SQG21293.1\|1823232_1825107_-	Serine/threonine protein kinase PrkC, regulator of stationary phase	A0A1B1IUU3	uncultured_Mediterranean_phage	1.3e-22	35.8
SQG21294.1\|1825103_1825847_-	phosphoprotein phosphatase	NA	NA	NA	NA
SQG21296.1\|1825996_1827322_-	ribosomal RNA small subunit methyltransferase B	NA	NA	NA	NA
SQG21298.1\|1827305_1828241_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	6.2e-10	38.1
SQG21300.1\|1828542_1830927_-	primosome assembly protein PriA	NA	NA	NA	NA
SQG21301.1\|1831712_1832030_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
SQG21303.1\|1832052_1832667_-	guanylate kinase	NA	NA	NA	NA
SQG21304.1\|1832879_1833824_+	magnesium/cobalt transport protein	NA	NA	NA	NA
SQG21306.1\|1833853_1834543_+	putative membrane spanning protein	NA	NA	NA	NA
SQG21307.1\|1834971_1835211_-	SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent	NA	NA	NA	NA
SQG21309.1\|1835268_1835751_-	ssDNA-binding protein	A0A191KBQ2	Streptococcus_virus	7.4e-60	73.9
SQG21311.1\|1835762_1836053_-	30S ribosomal protein S6	NA	NA	NA	NA
SQG21312.1\|1836506_1836953_-	Uncharacterised protein	NA	NA	NA	NA
SQG21314.1\|1836949_1837177_-	membrane protein	NA	NA	NA	NA
SQG21315.1\|1837339_1837516_-	Uncharacterised protein	NA	NA	NA	NA
SQG21317.1\|1837975_1838152_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
SQG21319.1\|1838171_1838357_-	Uncharacterised protein	NA	NA	NA	NA
SQG21320.1\|1838438_1838612_-	Uncharacterised protein	NA	NA	NA	NA
SQG21322.1\|1838633_1838819_-	Uncharacterised protein	NA	NA	NA	NA
SQG21324.1\|1839112_1839304_-	Uncharacterised protein	NA	NA	NA	NA
SQG21326.1\|1839587_1839830_-\|bacteriocin	bacteriocin peptide precursor	NA	NA	NA	NA
SQG21327.1\|1840050_1841040_-\|integrase	integrase core domain protein	A0A2K9V2S9	Faecalibacterium_phage	9.0e-36	35.7
1849681:1849698	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483381

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection