CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483375	Streptococcus gordonii strain NCTC3165 genome assembly, chromosome: 1	3 crisprs	cas3,WYL,csm6,DinG,csa3,RT,DEDDh	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483375_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483375_1

1360809-1360896

Orphan

Consensus_repeat	Method
GAACTCGCAAAGGCGAGTTTTTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483375_1

>merge|LS483375|1|1360809-1360896|CRISPRCasFinder
GAACTCGCAAAGGCGAGTTTTTATCTGCAACCTAAAACAGTCCCCCGGACCTTAGATTAAAGAGAACTCGCAAAGGCGAGTTTTTATC

>LS483375|1|1|1360809-1360896|CRISPRCasFinder
GAACTCGCAAAGGCGAGTTTTTATC	TGCAACCTAAAACAGTCCCCCGGACCTTAGATTAAAGA
GAACTCGCAAAGGCGAGTTTTTATC

Protein	Signature genes	Signature genes Name	Protein_function
LS483375.1\|SQG04372.1\|1364813_1365770_-\|putative-lipid-kinase	unknown	unknown	gnl\|CDD\|237282
LS483375.1\|SQG04375.1\|1369024_1369447_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|379228
LS483375.1\|SQG04369.1\|1360196_1360463_-\|putative-chorismate-mutase	unknown	unknown	gnl\|CDD\|168880
LS483375.1\|SQG04378.1\|1370835_1371498_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483375.1\|SQG04366.1\|1359039_1359387_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
LS483375.1\|SQG04379.1\|1371595_1372489_-\|ribonuclease-BN-family-protein	unknown	unknown	gnl\|CDD\|377085
LS483375.1\|SQG04377.1\|1370268_1370718_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
LS483375.1\|SQG04367.1\|1359502_1359829_-\|camphor-resistance-protein-CrcB	unknown	unknown	gnl\|CDD\|172717
LS483375.1\|SQG04374.1\|1368555_1368993_+\|mesH-protein	unknown	unknown	gnl\|CDD\|377229
LS483375.1\|SQG04364.1\|1355540_1357709_+\|sulfatase	unknown	unknown	gnl\|CDD\|224287
LS483375.1\|SQG04362.1\|1353430_1354108_-\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235036
LS483375.1\|SQG04371.1\|1362497_1364795_-\|pullulanase	unknown	unknown	gnl\|CDD\|273975
LS483375.1\|SQG04368.1\|1359825_1360200_-\|camphor-resistance-protein-CrcB	unknown	unknown	gnl\|CDD\|184575
LS483375.1\|SQG04370.1\|1360925_1362308_-\|FeS-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
LS483375.1\|SQG04361.1\|1352583_1353441_-\|shikimate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
LS483375.1\|SQG04376.1\|1369543_1370251_-\|B3/4-domain-containing-protein	unknown	unknown	gnl\|CDD\|225917
LS483375.1\|SQG04365.1\|1358132_1358879_-\|alpha/beta-hydrolase-related-protein	unknown	unknown	gnl\|CDD\|223669
LS483375.1\|SQG04373.1\|1365779_1367726_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
LS483375.1\|SQG04360.1\|1351438_1352506_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
LS483375.1\|SQG04363.1\|1354104_1355268_-\|methyltransferase	unknown	unknown	gnl\|CDD\|224017

Protein	Function_ID	Function_description	E-value
LS483375.1\|SQG04372.1\|1364813_1365770_-\|putative-lipid-kinase	gnl\|CDD\|237282	PRK13055, PRK13055, putative lipid kinase; Reviewed.	0
LS483375.1\|SQG04375.1\|1369024_1369447_+\|acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	8.29236e-11
LS483375.1\|SQG04369.1\|1360196_1360463_-\|putative-chorismate-mutase	gnl\|CDD\|168880	PRK07248, PRK07248, chorismate mutase.	9.99353e-40
LS483375.1\|SQG04366.1\|1359039_1359387_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.40737e-70
LS483375.1\|SQG04379.1\|1371595_1372489_-\|ribonuclease-BN-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	9.09419e-38
LS483375.1\|SQG04377.1\|1370268_1370718_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.26115e-15
LS483375.1\|SQG04367.1\|1359502_1359829_-\|camphor-resistance-protein-CrcB	gnl\|CDD\|172717	PRK14229, PRK14229, fluoride efflux transporter CrcB.	1.26769e-55
LS483375.1\|SQG04374.1\|1368555_1368993_+\|mesH-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	3.97932e-13
LS483375.1\|SQG04364.1\|1355540_1357709_+\|sulfatase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	8.01249e-153
LS483375.1\|SQG04362.1\|1353430_1354108_-\|3-dehydroquinate-dehydratase	gnl\|CDD\|235036	PRK02412, aroD, type I 3-dehydroquinate dehydratase.	6.72073e-116
LS483375.1\|SQG04371.1\|1362497_1364795_-\|pullulanase	gnl\|CDD\|273975	TIGR02104, pulA_typeI, pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.	0
LS483375.1\|SQG04368.1\|1359825_1360200_-\|camphor-resistance-protein-CrcB	gnl\|CDD\|184575	PRK14221, PRK14221, fluoride efflux transporter CrcB.	4.41712e-59
LS483375.1\|SQG04370.1\|1360925_1362308_-\|FeS-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
LS483375.1\|SQG04361.1\|1352583_1353441_-\|shikimate-5-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	2.72238e-110
LS483375.1\|SQG04376.1\|1369543_1370251_-\|B3/4-domain-containing-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	7.28923e-70
LS483375.1\|SQG04365.1\|1358132_1358879_-\|alpha/beta-hydrolase-related-protein	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.26097e-06
LS483375.1\|SQG04373.1\|1365779_1367726_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
LS483375.1\|SQG04360.1\|1351438_1352506_-\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	0
LS483375.1\|SQG04363.1\|1354104_1355268_-\|methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	1.75546e-141

>LS483375.1|SQG04369.1|1360196_1360463_-|putative-chorismate-mutase
MNLEELRQEINQIDDELVVLLEKRMKLVNQVATYKQETGKAVLDTKREEVILGRVADHVENPVYKDTILATFKDILKNSRAYQEQKKA
>LS483375.1|SQG04368.1|1359825_1360200_-|camphor-resistance-protein-CrcB
MKEVKNSLAICLAAMLGGWLRYLISSFVTFTGHFPLATLLVNYLGTFILVYLVKGYLANKQVSKRFILAISTGFCGGLTTFSSLLLDSIKLLDLGLYTDFILYLVLSIGGSLWIALWAGKKVGL
>LS483375.1|SQG04367.1|1359502_1359829_-|camphor-resistance-protein-CrcB
MIWLMLTACGGGALVRYFLSKVNSRAVLPVGTLMANLLGAFLIGYFYNHVQDKQLYTILATGFCGGLTTLSTFNAELVGLFSNKKKFIHYLMLTYLLGFLAIILGIFI
>LS483375.1|SQG04366.1|1359039_1359387_-|50S-ribosomal-protein-L19
MNPLIQSLTEGQLRTDIPAFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKGAGISENYTVRKISNGVGVERTFPIHTPRVDKIEVVRYGKVRRAKLYYLRALQGKAARIKEIRR
>LS483375.1|SQG04365.1|1358132_1358879_-|alpha/beta-hydrolase-related-protein
MTYYFIGGLGCNVYYPQDFFTALKLPIVYLDLYGQEIRQEADLEEWFALQVDLTEEVTLIAHSLGADFAVYLASVFPSVKKLILLDGGYLNLDKICNLEEEIADALTYLGKTSYSSIEEAVSLERYEAKHWSDNCSKAVKANLVFNEKAQVWKLGISQQIVKNLLTLRRLMYGCLSKLRDCQIHLFIPQQSESDPSWKVKALQELPDYVQLAEVKDCGHNIYGDNPLGLAKKVRSVLDRGVEYKIKKE
>LS483375.1|SQG04364.1|1355540_1357709_+|sulfatase
MSTRLGFVLTLLCFYWLKTMWAYTVDFNLDIQGFYQAFLAFVNPIPLGLLFIGLALYFKRSAIFYGFSISIYILLFIWLFSNAVYYREFSDFVTVNTMMASSSVSAGLGEAALGLFRPWDIIYLIDFPILGYLMYKKLIRVDHRPFNKRASFAITALSTMLFSANLFLAEIDRPQLLTRGFSNYYVVRALGLPAFLGYSGNQTYQANKERSKASAEDLKPVEEYIQSHYAEPNKDYFGIAKGRNVIYVHLESFQQFLIDYKLQADGKAYEVTPFLNSLYHSNSTLAFSNVFNQVKAGKTSDAETMIETGLFGLNQGSFMVNYGGTNTQQAAPFILSKNGGYTSAVFHGNAGSFWNRNTAYKQWGYNYFFDASYFTKQDDTNSFQYGLNDKIMLKDSIKYLERLQQPFYVKYITVSNHYPYTTSLIGDEIGFPLAKTKDETINGYFATANYLDSSVKALFDYLKKSGLYDNSIIVLYGDHFGISQTRNPNLAPLVGKTSETWSNYDNAMMQRVPYMVVIPGMDKGKIIDTYGGQVDMLPTLEHLLGIDSKNYLQVGQDMLSTQHQQITAFRSSNNFVTPKYTSFNGRTYYTQTGEEITNPDETIKKELDDIRNAANTQLKISDAIQTGDLIRFYEGNDLGKVDVKKYSYNHSFKALKKIEEEKGDQSTSLYSQRKGESTIDLFDAPSYRALHPEQFESTSSSEDSSESSSDSSSSSSSSSSKQ
>LS483375.1|SQG04363.1|1354104_1355268_-|methyltransferase
MKKLTVSRYKEEKIRQGSLLLEKEDFPELSFDHQAVELVSTQGKFLGCGYISKQNKGLGWLVSKQKVDFDRDFFISLFENAKEKRRFYRLAEDITAYRLFNQEGDGFAGLTVDQYGDYALFSWYNPFVFSLKEEILQAFQEVFPELMGAYEKIRFKGLDYESAHVYGAEAPEVFTVLENGVSYQVFLNDGLMTGIFLDQHEVRASLVDGLAFGKSLLNMFSYTAAFSVAAAMGGASQTTSVDLAKRSRELSEAHFQANGLTLDNHRFVVMDVFDYFKYAKRHGLSYDVIVLDPPSFARNKKQTFSVAKDYHKLIKESLEILNPRGILIASTNASNVSRAKFKKEIEKGFAGKHHRYIKEYGLPADFSYNKKDESSNYLKVFTIKVEE
>LS483375.1|SQG04362.1|1353430_1354108_-|3-dehydroquinate-dehydratase
MKLVVSVTPRNLEEAQQIDAQRFVDADLIEWRADFLDKEEILKVAPAIFEKFAGRELIFTLRTKDEGGHIQLSDDEYVEMIKKVAQLYQPDYVDFEYFSHKDKIDEMLEFPNLVLSYHNFEETPENMMEILSELTSLTPKAVKVSVMANSGQDVLDLMNYTRGFKTLNPEQEFVTISMGRVGRISRIASDLTGSSWSFASLDEATAPGQISLSSMKKIRDILNEN
>LS483375.1|SQG04361.1|1352583_1353441_-|shikimate-5-dehydrogenase
MKIDGHTRLAAVIAKPIKHSISPFIHNMAYALTDTNAVYLAFEVEREGLGQAVENIRLHQMLGANISMPYKQEVITYLDELDESALLIGAVNTIVNQNGRLIGYNTDGFGFFRSLSNFHIKGKNLTILGAGGAASAIIGQAMLDGVGKVCVFDLRDRLAGHQERMGQMSRRLGHPIQLLAVEDLAALTDAVNQSDLFINATGLGMDGKSLPIPSDFTFPKGLLVADMAYCPAETPFLRLAREQGLQTVNGLGMLLYQAEKAFELMTGKKMPSEEIKKSLIEKLEI
>LS483375.1|SQG04360.1|1351438_1352506_-|3-dehydroquinate-synthase
MKLNVNLPHHPYDIIIENGALSQAGNWLSQLWQPQKLVIITDNRVARLYAEKVKLSLEAAGFKVFTFDFLEGEASKNLTTVNKAYEFLAKVGLTRSDGIVALGGGVVGDLAGFVASTYMRGIHFVQIPTSLTAQVDSSIGGKTGVNTPWAKNMVGTFTQPDGVLIDPQVLQTLGKRELIEGMGEVVKYGLIEDKELWDELSEMDGSPESILEHAESIIYHSCDVKRKIVVEDELDNGVRLYLNFGHTIGHAIEATAGYGQVMHGEAVAIGMVQVSRVAEKQGLMPAGITEDIIHMCQKFGLPVDYQPWDENALYQALTHDKKARGNSIKLVLVPELGSASIHQIPLEEMKEFLKK
>LS483375.1|SQG04370.1|1360925_1362308_-|FeS-assembly-protein-SufB
MPQRDYAFGFHDDIAPLYSTGKGLTEAVVREISAIKKEPQWMLDYRLRSLELFNKLPMPDFGPDLSGIRFEDVIYYQKLSGQPARSWDDVPEEIKRTFDRLGIPEAEKQFLSGAVAQYESEVVYHNMKEEFEKLGIIFTDTDTAVQEYPELVKQYFGTVVSNAEHKFAALNGAVWSGGTFIYVPKNVHCQIPVQTYFRINGENAGQFERSLMIIEEGGSIQYIEGCTAPTYTTNSLHAATVEIIVKKDAFFRYTTIQNWSDNVYNLVTERGTVEEGGTLEWIDGNLGSKVNMKYPCSILNGRNARTSVLSMSFANYGQHLDAGCKVFHNAPKTSSTLISKSVAKDGGKTDYRGQVRFGKNSAGSKSHIECDTILMDGESSSDTIPFNEIHNSNVALEHEAKVSKVSEDQLYYLMSRGISEEEATAMIINGFMEPITKELPMEYAVELNQLINMSMEGSVG
>LS483375.1|SQG04371.1|1362497_1364795_-|pullulanase
MPDYQVLVHYHNPTDDYLSYNIWQWQENQIGKEASFSNFDYFGRSGLVTYQSETNLDYVHLIIKKADWSSQTIDYTIRLLPAHLVTEVWILEGDHQVYYSRQAAVTSHYYKYRDPHAFDMAVSSKEFDRHWGYQGRLGVFYQADKTEFKLWAPTAKAVEAVIYKDASNQASIWKTISLKRGRDFSTDHTKNTIGVWQGSISEDLAKRAYQYRVIFDHEEYLTRDPYSQATSPDGKRTAIVTDQERNPLGFQAKQGQEAHWRVKNACQAVIYEMHIRDLSQSESSGVTPAYRGTFLGACQTGTTNGTGQATTFDHIRDLGVNYVQLQPISDRHKDYDENGQVTYNWGYDPQNYNAPETSLSSNPSDPAQAIRDLKTLIQAYHDAGIGVILDVVYNHTYSTFDSPFQASVPDYYYRMNPDGSFQNGTGVGSETASEHEMFRKYMIDSLLYWVKEYNVDGFRFDLMGIHDVETMQIIRDELDKVDPRILTYGEGWDMGTGLLPQDKAKKDNAYQLLDIGFFNDNERDAIKGAEVFGTLKAGFVSGQGTENIIAKAILGSSELGSYLMPNQVVNYVEAHDNYNLHDLLEEFHPHDDLETLTKRIELATAMNILMQGLAFMELGQEFSRTKLVRTGPNGQVTQADKERAMNSYNAPDQANQVDWNLLSKHQDSVNFIRKIIQLKTTRKEFSYSTYEEIYQHVYVRHAQTNSGLIIFEVKDKKHYLVVFNASGTPYRLENADQLKLVVSNNRSKINTEVENLTASVFEILA
>LS483375.1|SQG04372.1|1364813_1365770_-|putative-lipid-kinase
MKDVIKRARLIYNPTSGQEIIKKNIAEVLDVLEDVGYETSAYQTTPEPLSAQKEAERAAKAGFDLIIAAGGDGTINEVVNGVAPLENRPRLAFIPTGTTNDYARALKIPMGKPVEAARIIAKNQTIKMDIGRAFGKKYFINIAAAGTLSELTYRVPSEAKSRLGYFAYVAKGAEMLPRSKFRKVRITHDHGVFEGKISLMFAALTNSIGGFEQVAPDAKLDDGNFTLILVKTAKLFEMLALLIQAINGGQHVTDVNVEYLKTSKLKLEVLDSKEPFMLNLDGEYGGDTPVELEVFHNHLEFFANIDEISDDALCSEKS
>LS483375.1|SQG04373.1|1365779_1367726_-|NAD-dependent-DNA-ligase-LigA
MSELVSLLNRYAHEYYTKDAPSVSDSEYDQLYRELVSLEEQYPNEILPESPTHRVGGKVLDGFEKYQHQYPLYSLQDAFSRAELVAFDERVRKEFPDASYLCELKIDGLSISLAYENGILVAGATRGDGSIGENITENLKRVKDIPLTLPEPLTITVRGECYMPKASFDAVNQLRQENGEAEFANPRNAAAGTLRQLDTSVVAKRNLATFLYQEASPTSEATQEDVLEKLSQLGFSVNEKRVLASTIDQVWDFIEKVGQERDKLPYEIDGIVIKVNHLATQEELGFTVKAPKWAIAYKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIADKDIRKGDTVIVYKAGDIIPAVLRVVEGKRVSDEHLDVPSQCPSCQSDLLHFEDEVALRCINPLCPAQIMEGLAHFASRDAMNISGLGPAVVEKLFAKDLVRDVAGIYRLSIEDLLQLENFKEKSANKLYNAIQASKSNSAEKLLFGLGIRHVGSKASRILLEKFHDIPSLAQAEQEEIASIDSLGMVIAKSLHSYFAQEGTQILLKELEEAGVNLAYLGEKVAADAVLSGKTVVLTGKLETLTRTQAKEKLLRLGANVAGSVSKKTDLVIAGADAGSKLAKAQELGIEIQDEAWLEQL
>LS483375.1|SQG04374.1|1368555_1368993_+|mesH-protein
MKSLIKKFFDNEILSYLFFGVATTIVSVASRMICYELTSNEILATVIGDVLGILFAFATNDTIVFKQERKGWPARLVKFFTARLATMGLNLLLTFIFVTSFPQIIGQFVNHNIKMVNTIETLIAQVLIIVLNYVFSKLFVFEKKN
>LS483375.1|SQG04375.1|1369024_1369447_+|acetyltransferase
MNLKFENGDLAKREELRNLLRTYNRSKREPSESQSLDIYLEDEEGNLIAGLAGETFGNWLEIEYLFVKEDLRGQGIGSKILDQAEKEARVRNCTYSFVNTYQFQAPDFYKRHGYQEVFTLKEYPYNGKRYYFTKDLGPEN
>LS483375.1|SQG04376.1|1369543_1370251_-|B3/4-domain-containing-protein
MKVTVEHEFWQVFPEAQISVLVVKGLDNRVDESKDPYFKSLLDKGAKRAEDFILDENFTQNEVIQEWRQAFSKFKTKKGARSSIEALLKRVSQGREFHPINPLVDIYNSVSLSYAVPCGGEDLDKIVGGLYLGKAKGGEAFFPLGAESDAPALPEEIIYYDEEGAVCRCLNWREAKRTMLTEETKDAVLVIEAINKEQAVRAQAAMSELQTLIEEYFGIKGEITHLTAEHPNLEI
>LS483375.1|SQG04377.1|1370268_1370718_-|MarR-family-transcriptional-regulator
MSVLREIGIIARALDSIANIEFRDIELARGQYLYLVRIAENPGIIQEELSELLKVDRSTVARSVKKLEAKGLIQQKAAKENKKNKEWFVTEKGEKLYPFILAENNYSEETSLQGFSQAEVKALEKMLVRVRENITGDWEAVKKGQKRNY
>LS483375.1|SQG04378.1|1370835_1371498_-|Uncharacterised-protein
MNSEKNAAIRSEVFKQELASSLLSKKVSTIKKVAKQIRRQRIEGLDQALAEALDFVMTKPRSWEAQHELILTIAATECTSLIPYLEKLVQGNYSATVLYRSLALAIVYLQNKEKKELSYVYSILESGNQNLFAGALLGLNQREVVLSHEEVQDFYSAAKREVYLENFRQVISPIQVLVSMAYLFEDRERQELISYCQELNSAFFSSIITNLNKNKKIPYL
>LS483375.1|SQG04379.1|1371595_1372489_-|ribonuclease-BN-family-protein
MKKIVEKLKQQQFLRAFIGFYDKSEIGMTSIAVAYYFLISALPLLLVLANILPYFQVQTDALLNLLNEILPDSLYPMVAKAVRAVFGQPSSGLLGFSILSALWAFSKCISFLQKAFNKAYGVTKGHGLLRNRLFSFVVSIGLQILLILSMILSVFGRSILTVVYNVFDLDVSFYRQITTITEGLVFLVLFLTLVVLYYLLPNVKINKLRYVLPGTIFVVGILFGLLNLFSAYLEAYMHHFINVRFFGSVVVIIIMLWFIIVSKILIIGAILNASIQSCSESEFQLDRIGSFSFKKKD

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Crispr_ID: LS483375_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483375_2

1605304-1605448

Orphan

Consensus_repeat	Method
CAACCTAAAAATGTCTCCCAGAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of LS483375_2

>merge|LS483375|2|1605304-1605448|CRISPRCasFinder
CAACTTAAAAAGGTCCACTGGACCTTTTCAAATATTAAGTTATTTTCGTAACTTTCTATCCACAACCTAAAAATGTCTCCCAGACTGTTTGAAGAAAACTCGCTGTTGCGAGTTCCCATCTGCAACCTAAAAATGTCTCCCAGAC

>LS483375|2|2|1605304-1605448|CRISPRCasFinder
CAACTTAAAAAGGTCCACTGGAC	CTTTTCAAATATTAAGTTATTTTCGTAACTTTCTATCCA
CAACCTAAAAATGTCTCCCAGAC	TGTTTGAAGAAAACTCGCTGTTGCGAGTTCCCATCTG
CAACCTAAAAATGTCTCCCAGAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483375.1\|SQG04593.1\|1595809_1595986_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483375.1\|SQG04596.1\|1599577_1600879_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
LS483375.1\|SQG04608.1\|1611304_1611934_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
LS483375.1\|SQG04592.1\|1594078_1595623_-\|regulator-of-gtfB	unknown	unknown	gnl\|CDD\|179105
LS483375.1\|SQG04599.1\|1602918_1604154_+\|MurN-protein	unknown	unknown	gnl\|CDD\|367067
LS483375.1\|SQG04600.1\|1604222_1604879_-\|acetoin-utilization-putative/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341361
LS483375.1\|SQG04610.1\|1615200_1616367_-\|L-cysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|224090
LS483375.1\|SQG04604.1\|1607883_1608753_-\|ABC-transporter-membrane-spanning-permease-branched-chain-amino-acid-transport	unknown	unknown	gnl\|CDD\|223633
LS483375.1\|SQG04609.1\|1612031_1614692_-\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319772
LS483375.1\|SQG04602.1\|1606162_1606927_-\|putative-branched-chain-amino-acid-transport-protein	unknown	unknown	gnl\|CDD\|223488
LS483375.1\|SQG04597.1\|1600880_1601690_+\|Cof-family-protein	unknown	unknown	gnl\|CDD\|182509
LS483375.1\|SQG04594.1\|1596169_1598866_-\|cation-transporter-E1-E2-family-ATPase	unknown	unknown	gnl\|CDD\|319781
LS483375.1\|SQG04601.1\|1605452_1606163_-\|branched-chain-amino-acid-transport-protein	unknown	unknown	gnl\|CDD\|223487
LS483375.1\|SQG04598.1\|1601689_1602904_+\|MurM-protein	unknown	unknown	gnl\|CDD\|367067
LS483375.1\|SQG04605.1\|1608911_1610078_-\|branched-chain-amino-acid-transport-protein	unknown	unknown	gnl\|CDD\|380570
LS483375.1\|SQG04603.1\|1606926_1607880_-\|branched-chain-amino-acid-permease	unknown	unknown	gnl\|CDD\|119323
LS483375.1\|SQG04595.1\|1599086_1599473_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|378129
LS483375.1\|SQG04591.1\|1593515_1593764_-\|methyltransferase	unknown	unknown	unknown
LS483375.1\|SQG04607.1\|1610514_1611105_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
LS483375.1\|SQG04606.1\|1610167_1610437_-\|UPF0298-protein-SSU98	unknown	unknown	gnl\|CDD\|179410

Protein	Function_ID	Function_description	E-value
LS483375.1\|SQG04596.1\|1599577_1600879_+\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	2.8384e-158
LS483375.1\|SQG04608.1\|1611304_1611934_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	4.99372e-142
LS483375.1\|SQG04592.1\|1594078_1595623_-\|regulator-of-gtfB	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
LS483375.1\|SQG04599.1\|1602918_1604154_+\|MurN-protein	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	2.18141e-180
LS483375.1\|SQG04600.1\|1604222_1604879_-\|acetoin-utilization-putative/CBS-domain-containing-protein	gnl\|CDD\|341361	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain. The putative Acetoin Utilization Protein (Acub) from Vibrio Cholerae contains a CBS pair domain. The acetoin utilization protein plays a role in growth and sporulation on acetoin or butanediol for use as a carbon source. Acetoin is an important physiological metabolite excreted by many microorganisms. It is used as an external energy store by a number of fermentive bacteria. Acetoin is produced by the decarboxylation of alpha-acetolactate. Once superior carbon sources are exhausted, and the culture enters stationary phase, acetoin can be utilised in order to maintain the culture density. The conversion of acetoin into acetyl-CoA or 2,3-butanediol is catalysed by the acetoin dehydrogenase complex and acetoin reductase/2,3-butanediol dehydrogenase, respectively. Acetoin utilization proteins, acetylpolyamine amidohydrolases, and histone deacetylases are members of an ancient protein superfamily.This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT (aspartate kinase/chorismate mutase/TyrA) domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	3.46502e-60
LS483375.1\|SQG04610.1\|1615200_1616367_-\|L-cysteine-desulfhydrase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	0
LS483375.1\|SQG04604.1\|1607883_1608753_-\|ABC-transporter-membrane-spanning-permease-branched-chain-amino-acid-transport	gnl\|CDD\|223633	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].	1.89574e-80
LS483375.1\|SQG04609.1\|1612031_1614692_-\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|319772	cd02077, P-type_ATPase_Mg, magnesium transporting ATPase (MgtA), similar to Escherichia coli MgtA and Salmonella typhimurium MgtA. MgtA is a membrane protein which actively transports Mg(2+) into the cytosol with its electro-chemical gradient rather than against the gradient as other cation transporters do. It may act both as a transporter and as a sensor for Mg(2+). In Salmonella typhimurium and Escherichia coli, the two-component system PhoQ/PhoP regulates the transcription of the mgtA gene by sensing Mg(2+) concentrations in the periplasm. MgtA is activated by cardiolipin and it highly sensitive to free magnesium in vitro. It consists of a transmembrane domain and three cytosolic domains: nucleotide-binding domain, phosphorylation domain and actuator domain, and belongs to the P-type ATPase type III subfamily. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LS483375.1\|SQG04602.1\|1606162_1606927_-\|putative-branched-chain-amino-acid-transport-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.5427e-132
LS483375.1\|SQG04597.1\|1600880_1601690_+\|Cof-family-protein	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	3.08042e-120
LS483375.1\|SQG04594.1\|1596169_1598866_-\|cation-transporter-E1-E2-family-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LS483375.1\|SQG04601.1\|1605452_1606163_-\|branched-chain-amino-acid-transport-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	4.88655e-132
LS483375.1\|SQG04598.1\|1601689_1602904_+\|MurM-protein	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	4.5775e-146
LS483375.1\|SQG04605.1\|1608911_1610078_-\|branched-chain-amino-acid-transport-protein	gnl\|CDD\|380570	cd06347, PBP1_ABC_LivK_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	3.61777e-135
LS483375.1\|SQG04603.1\|1606926_1607880_-\|branched-chain-amino-acid-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.26495e-68
LS483375.1\|SQG04595.1\|1599086_1599473_-\|50S-ribosomal-protein-L19	gnl\|CDD\|378129	pfam09148, DUF1934, Domain of unknown function (DUF1934). Members of this family are found in a set of hypothetical bacterial proteins. Their precise function has not, as yet, been defined.	6.97318e-22
LS483375.1\|SQG04607.1\|1610514_1611105_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.2753e-128
LS483375.1\|SQG04606.1\|1610167_1610437_-\|UPF0298-protein-SSU98	gnl\|CDD\|179410	PRK02302, PRK02302, hypothetical protein; Provisional.	1.81581e-43

>LS483375.1|SQG04600.1|1604222_1604879_-|acetoin-utilization-putative/CBS-domain-containing-protein
MAVKDFMTRKVVYISPDTTVAHAADIMREQGLHRLPVIENDKLVGLVTEGTIAEASPSKATSLSIYEMNYLLNKTKIKDVMIRKVITVSQYASLEDATYLMLKNKVGILPVVDNEQVYGVITDRDIFKAFLEVSGYGEEGVRVRFVTEDEVGVLEHIVHLLVEENLNISNAVNIPRKDGKVVIEVQIDGKVDLEALKTKFEDNQIHVDSIVHTEAKAL
>LS483375.1|SQG04599.1|1602918_1604154_+|MurN-protein
MTFKLLSQEEFIQHTSASSQCSFMQTVEMAELLSKRGFSTQYVGYTDPQGQVVVSAVLYSMPMTGGLHMEINCGPVSTDAQYLPPFYQALQAYAKKEGALELIIKPYETYQTFDSNGQPTSDEKVELIQQLTDLGFDFDGLQTGYPGGEPDWHYVKDLAGLTEKDLLKSFSKNGKATVKKANTFGIKLTRLERDQLSIFKDITSATSDRREYDDKPLDYYQDFYDSFGQQADFMVASLNFKDYLQNLQKDQEKLGQKIQKLQTDLENNPQSEKKQNQLRELSSQFDSFETRKAEAQDLIDKYGDQDQVLAASLFIYTLQEATYLFSGSYPEFNKFYSPALLQEYVMTESIKRGIPFYNFLGIMGIFDGSDGVLRFKQNFNGFIVRKMGTFRYYPNPLKFKIIQLIKKILRR
>LS483375.1|SQG04598.1|1601689_1602904_+|MurM-protein
MFSYKIGISAQEHDDFVTAHPQANLLQSSAWAQIKDNWANERLGFYKDDHLVAAASVLIKPLPWGMTMLYIPRGPIMDYSDKELLVFVLASLKKFAKEKKALFVKFDPSLFLAESKMGGEMQDKSETIELIQDLQQAGAVWVGRTESLDETIQPRLQANIHKEDFSEDLLPKSTRQAIRTARNKGIQIQFGGAELLDDFSGLMKKTENRKNIHLRGKDYYQKLLDTYPNHSYITLSSIDLKARLEDLQAQLTKTLKEAEKFTEKTKPGKIENNQQEQKRLQEEIDFLQDKISQGATVVPLSGTLVLEYGKTSENIYAGMDEEYRRYQSAIITWYETAKHAFERGADWQNMGGIENDLKGGLYSFKSKFNPTIEEFAGEFNLPTNPLYHLSNLAYTIRKKLRSKH
>LS483375.1|SQG04597.1|1600880_1601690_+|Cof-family-protein
MSIKLVAIDIDGTLLNSKKEITPEVFSAIQDAKAAGVKIVIATGRPIAGVQRLLEELELNQPDNYVVTFNGGLVQDTVTGQELIKETLTYDDYLDIELLGRKLGVHMHAITKDGIYTANRNIGKYTVYESNLVSMPIFYRTPEEMTNKEIVKCMYIDEPEILDAAITKLPPELAEKYTLVKSAPFYLEIVKKTVNKGAAVLHLAEKLGLTKEQTMAIGDEENDRAMLEAVGSPVVMENGKEELKKIAKYITKSNDESGVAHAIREWVLK
>LS483375.1|SQG04596.1|1599577_1600879_+|HD-domain-containing-protein
MIEKVFRDPVHTYIHVDHQVIYDLINTKEFQRLRRIKQLGTSGYTFHGGEHSRFSHCLGAYEIARRITKIFDEKYLQTWDNHESLLVMVTALLHDVGHGAYSHSFERLFDTDHEEITRQIITSPETEINRVLTQVSPDFPEKVASVINHTYPNKQVVQLISSQIDVDRMDYLLRDSFYTGASYGQFDLTRILRVIRPVENGIAFQRNGMHAVEDYVVSRYQMYMQVYFHPASRAMEVLLQNLLKRAKFLYEDQKDFFKLTSPNLLPFFEKRFSLQDYLALDDGVMNTYFQSWMTSPDTILSDLAQRYVNRKVFKSMIFSEENEKHLDVLRQLVKQVGFEPDYYTAIHRNFDLPYDFYRPDVEKPRTQIEIIQKDGSLAELSSLSPIVQSLAGTRQGDNRFYFPKEMLTDAGLFNENSQAFLSYMKNDTFIYGE
>LS483375.1|SQG04595.1|1599086_1599473_-|50S-ribosomal-protein-L19
MKIRMKNQIQLDGQTELIDQIYDAEWTQKGNHHYLLFKNEEDEKVVLKFHDTELTMTRFSNPKTLMRFIKDDRALVGVPTPMGIQTLMTDTQRYHLDIDKQIIFLDYQLKTPDGERLFADYQMEISWL
>LS483375.1|SQG04594.1|1596169_1598866_-|cation-transporter-E1-E2-family-ATPase
MSKEQKRQAFYTQDQDLVLQEMETSKEGLTSSEAAKRLSEYGRNELDEGEKKSLLVKFIEQFKDLMIIILLVAAVLSVVTSGGEDIADAIIILAVVIINAAFGVYQEGKAEEAIEALKSMSSPAARVLRDGHVAEVDSKELVPGDIVILEAGDVVPADLRLFEANSLKIEEAALTGESVPVEKDLSVELAEDAGIGDRVNMAFQNSNVTYGRGIGVVVNTGMYTEVGHIAGMLQNADETDTPLKQNLNNLSKVLTYAILVIAAVTFVVGVFIQGKDPLGELMTSVALAVAAIPEGLPAIVTIVLALGTQVLAKRNSIVRKLPAVETLGSTEIIASDKTGTLTMNKMTVEKVFYDAVLHDSADEIELGLDMPLLRSVVLANDTKIDQEGKLIGDPTETAFIQYALDKGYDVKAFLEKYPRVAELPFDSDRKLMSTVHPLPDGKFLVAVKGAPDQLLKRCVARDKAGDVAAIDDATSHLIKSNNSEMAHQALRVLAGAYKIIDSIPENLTSEELENNLIFTGLIGMIDPERAEAAEAVRVAKEAGIRPIMITGDHQDTAEAIAKRLGIIDENDSEDHVLTGAELNELSDEEFEKVVGQYSVYARVSPEHKVRIVKAWQNQGKVVAMTGDGVNDAPALKTADIGIGMGITGTEVSKGASDMILADDNFATIIVAVEEGRKVFSNIQKTIQYLLSANTAEVLTIFLATLFGWDVLQPVHLLWINLVTDTFPAIALGVEPAEPGVMTHKPRGRKSSFFSGGVLSSIIYQGVLQGALVLSVYGYAIANPVHAGDHTAIHADALTMAFATLGLIQLFHAYNVKSVYQSILTVGPFKSKTFNWSILVSFFLLAATIVIDPLESIFHVTKLDLSQWAVVLLGSFSMIIIVEIVKFVQRKMGLDKNAI
>LS483375.1|SQG04593.1|1595809_1595986_-|Uncharacterised-protein
MKIEEDLILYLLKRNKAIFSMTAEEKEEFESRKIRLLYLLGLILLFAIFLFSSFIVRF
>LS483375.1|SQG04592.1|1594078_1595623_-|regulator-of-gtfB
MNLQEEIKKRRTFAIISHPDAGKTTITEQLLYFGGEIREAGTVKGKKTGTFAKSDWMDIEKQRGISVTSSVMQFDYDGKRVNILDTPGHEDFSEDTYRTLMAVDAAVMVVDSAKGIEAQTKKLFEVVKHRGIPVFTFMNKLDRDGREPLDLLQELEEVLGIASYPMNWPIGMGKAFEGLYDLYNQRLELYKGDERFASLEDGDKLFGSNPFYEQVKEDIELLNEAGNEFSEEAILAGELTPVFFGSALTNFGVQTFLETFLKFAPEPHGHKKTDGEIVDPYDKDFSGFVFKIQANMDPRHRDRIAFVRIVSGEFERGMSVNLPRTGKTAKLSNVTQFMAESRENVTNAVAGDIIGVYDTGTYQVGDTLTVGKNKFEFEPLPTFTPEIFMKVSAKNVMKQKSFHKGIEQLVQEGAVQLYTNYQTGEYMLGAVGQLQFEVFKHRMEGEYNAEVVMTPMGKKTVRWISPDDLDERMSSSRNILAKDRFDQPVFLFENDFALRWFADKYPDVKLEEKM
>LS483375.1|SQG04591.1|1593515_1593764_-|methyltransferase
MDNEEKEIIWKMPFNSLKDKAAKEYMIKGNAGMQFSYNITEQIGGQLKAGFTLLDIYEDTNGSGRLYELNIKTYIATKSVKR
>LS483375.1|SQG04601.1|1605452_1606163_-|branched-chain-amino-acid-transport-protein
MTMLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTISGLVRPSAGKIEFLGNEIQKVPAQKIVAAGLSQVPEGRHVFPGLTVMENLEMGAFLKTNREENQANLKKVFSRFPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIFDIIQDIQKQGTTVLLIEQNANKALSIANRGYVLETGKIVLSGTGQELLASDEVRKAYLGG
>LS483375.1|SQG04602.1|1606162_1606927_-|putative-branched-chain-amino-acid-transport-protein
MALLDVKNLTKHFGGLTAVGDVTLELNEGELVGLIGPNGAGKTTLFNLLTGVYEPSEGTVTLDGHLLNGKAPYKIASLGLGRTFQNIRLFKDLTVLDNVLIAFGNHHKPHTFASFFRLPAFYKNEEDLKNKALDLLKIFDLDKEAETLAKNLAYGQQRRLEIVRALATEPKILFLDEPAAGMNPQETAELTELIRRIKNEFNITIMLIEHDMSLVMEVTERIYVLEYGRLIAHGTPDEIKSNERVIEAYLGGEA
>LS483375.1|SQG04603.1|1606926_1607880_-|branched-chain-amino-acid-permease
MKQNLKVNVLWLALILAGYLLITVLAGGGILNAFHLQILEEIGINIILAVGLNLIVGFSGQFSLGHAGFMAIGAYAVAIIGTKSPTYPAFFAAMILGAFIAGLVALGVGIPTLRLKGDYLAIATLGVSEIIRILIVNGGEVTNGAAGILSIPGFTSWQMVYFFVVITTLFTLNFLRSPLGRKTLSVREDEIAAESVGVNTTKAKVVAFVFGAITASIAGALKAGFIGAVVPKDYSFTNTINVLIIVVFGGLGSMTGTIIAAIVLGVLNMLLQEFSSIRMIIYSLALILVMIFRPGGLLGTWELQLSRFLKKDKEVKE
>LS483375.1|SQG04604.1|1607883_1608753_-|ABC-transporter-membrane-spanning-permease-branched-chain-amino-acid-transport
MLQQLVNGLILGSVYALLALGYTMVYGIIKLINFAHGDIYMMGAFMGYFLINSLKLNFFLALIVAMIGTAILGVVIEFLAYRPLRNSTRIAALITAIGVSFLLEYLMVYFVGASTLPFPQVIPTVRFNLGPITVSNIQLMILGISIFLMLALQFIVQKTKMGKAMRAVSVDSDAAQLMGINVNRTISFTFALGSALAGAAGVLIALYYNSLEPLMGMTPGIKSFVAAVLGGIGIIPGAALGGFVIGLLETFATAFGMSDFRDAIVYGILIIILLIRPAGILGKNVKEKV
>LS483375.1|SQG04605.1|1608911_1610078_-|branched-chain-amino-acid-transport-protein
MKKKFALTLVSLASVALLAACGEVSTTGNSGSASGTEIGKTLKIGFNFEETGDVASYGTAEQKAAKLAVDEINKAGGVDGKQIEVTDKDNKSELSEASTVSTNLVTQAKVNAIIGPATSGGTGAAITNAAKASVPLVTPSGTQDDLTKGQDYLFRATFIDSFQGKILSKYVTDNLKAKKVVLYYDNSSDYAKGIAKAFQEEYKGEIVATETFASKDTDFQAALTKFKGKDFDALVVPGYYTEAGKIVNQARGIGIDKPIVGGDGFNSEEFISQATPAAATNVYYVSGYSTSGDMTAKAKKFLEAYKAKYNEEPSMFSALAYDSVYMVAEASKGAKNSVDIKENLAKLKDFEGVTGSITMDKNHNPVKSALMIGLKDGKVDTVETVKPN
>LS483375.1|SQG04606.1|1610167_1610437_-|UPF0298-protein-SSU98
MYQKEERVGIIVYLYYNRDVKKVAAYGDIVYHSKKRRYLQLYVPKTQAEDLQKKLGQEKFVKKVRACHIQELDKNFVGSLYRQEENVII
>LS483375.1|SQG04607.1|1610514_1611105_-|ATP-dependent-Clp-protease-proteolytic-subunit
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGKTVEQIHADAERDYWMSAEETLAYGFIDEIMANNNLS
>LS483375.1|SQG04608.1|1611304_1611934_-|uracil-phosphoribosyltransferase
MGKLEVIAHPLIQHKLSILRRTDTSTKAFRELVDEIAMLMGYEVLRDLPLEDVEIETPITKTIQKQIAGKKLAIVPILRAGIGMVDGLLSLVPAAKVGHIGMYRDEETLKPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGASHITFVCLVSAPEGVKALQEAHPDVDIFTAALDDHLNDHGYIVPGLGDAGDRLFGTK
>LS483375.1|SQG04609.1|1612031_1614692_-|magnesium-translocating-P-type-ATPase
MKTIKERLVAALQLPVQETLTFYKTAFRGLTEEQIEENRDLYGENIITKGQEDSILKKIYESIINPFTVILLVIALVSLVTNVWLAKPGEEDPTTSIIIVVLVLISGGIRFIQELRSDRAASNLSRLIVNTATVIREGVEQELPIDELVVGDIIKLSAGDMIPADVLLLESRDFFVQQSGLTGESDAVEKVCLSKADGQNLDSLLETESLAFMGTNVISGRATALVLVVGDETMMGAIEQTLNTYDEPTSFERDMNSISWLLIRLMLVMVPVVFFINGLTDGDWLEAGVFALSVGVGLTPEMLPMIITASLAKGSIIMAQEKVVIKKLNAIQDLGAIDILCTDKTGTLTQDEIVLEYPLDIHGDLDLAVLRRAFLNSYYQTGLKNLMDRAIINRTEKEAEKHEIVRDLDQTFKKIDELPFDFERRRMSVIVKDDENIISMVTKGALEEMLAISSHVEYKNRITELTEEIRQEILAEVAQLNEQGLRVLGVSYKSDLEEDYDYEVKDESDMILTGYLAFLDPPKSSAAPAIETLAEYGVATKILTGDNEKVTQAVCEKVGLDVENILLGVEVDALSDEELSQAVENTTVFAKLSPDQKARIILQLKANGHKVGYMGDGINDAPSMKVADVGISVDTAVDIAKETADVILLDKDLMVLEKGLVEGRKVYANMTKYIKMTVSSNFGNIFSLLFASIFLPFLPMAPVHLIVLNLVYDLSCIALPFDNVDSEFLKKPRIWSANSITRFMAWIGPISSIFDVLTYLALYFIIVPMITGSSYQAGTEQAATFITLFQTGWFIESMWTQTMVIYMLRSPKLPFVQSRPALSVIVTTMAAVLFVTSLPYSLFASVLKTAPLNGAYFLFLLLIIVLYMVSVTFVKHLYIKRYKEWL
>LS483375.1|SQG04610.1|1615200_1616367_-|L-cysteine-desulfhydrase
MGKYNFETAPNRFGHHTYKWKEAEEDRNVLPAWIADMDFEVLPEIQQAVHDYADHLVYGYTYASEELIKAVLDWERDEHGYAFDRDALVFIEGVVPAISTAIQAFTKEGDAVLINTPVYPPFARSIKLNNRRLITNSLIEQDSLFQIDFEQLERDIVDNEVKIYVLCNPHNPGGRVWEREVLEKIGRLCQKYGVLVVSDEIHQDLTLFGHEHQSFNTVSPDFKDFSLILASATKTFNIAGTKNSYAVIENPSLRHQFKKRQLANNQHEISGLGFVATEAAYRYGKSWLTELKTVLAENIDFVVDYFAKEAPRLRVMKPQGTYLIWLDFSDYGLTDDQLFQLLREEAKVVLNRGSDFGQEGKSHARLNVAAPKDIVLEICKRIGAVLPK

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Crispr_ID: LS483375_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483375_3

1763618-1763690

Orphan

Consensus_repeat	Method
AAATAAGTTTCCGTGAGAACTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483375_3

>merge|LS483375|3|1763618-1763690|CRISPRCasFinder
AAATAAGTTTCCGTGAGAACTATTCTACCACTTCAAAAGCGAAAGTCAAGAAAAAAGTTTCCGTGAGAACTAT

>LS483375|3|3|1763618-1763690|CRISPRCasFinder
AAATAAGTTTCCGTGAGAACTAT	TCTACCACTTCAAAAGCGAAAGTCAAG
AAAAAAGTTTCCGTGAGAACTAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483375.1\|SQG04744.1\|1756459_1758073_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483375.1\|SQG04740.1\|1752592_1753411_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226953
LS483375.1\|SQG04743.1\|1755979_1756390_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379638
LS483375.1\|SQG04755.1\|1770211_1771495_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|227095
LS483375.1\|SQG04745.1\|1758513_1759458_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
LS483375.1\|SQG04756.1\|1771504_1773139_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|225519
LS483375.1\|SQG04746.1\|1759618_1761376_-\|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component	unknown	unknown	gnl\|CDD\|224055
LS483375.1\|SQG04758.1\|1773902_1775363_-\|ABC-transporter-substrate-binding-protein-SP0092	unknown	unknown	gnl\|CDD\|378792
LS483375.1\|SQG04750.1\|1764433_1764844_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|181704
LS483375.1\|SQG04741.1\|1753412_1754405_-\|ATP-binding-transport-protein	unknown	unknown	gnl\|CDD\|226952
LS483375.1\|SQG04754.1\|1768695_1770078_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|225343
LS483375.1\|SQG04748.1\|1763124_1763583_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
LS483375.1\|SQG04742.1\|1754690_1755572_-\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180926
LS483375.1\|SQG04747.1\|1761365_1763132_-\|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component	unknown	unknown	gnl\|CDD\|224055
LS483375.1\|SQG04752.1\|1766032_1766557_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483375.1\|SQG04739.1\|1751805_1752591_-\|ABC-transporter-permeae	unknown	unknown	gnl\|CDD\|226218
LS483375.1\|SQG04749.1\|1763854_1764424_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483375.1\|SQG04751.1\|1764892_1765792_-\|putative-fructokinase	unknown	unknown	gnl\|CDD\|366120
LS483375.1\|SQG04753.1\|1766672_1768484_-\|glucosamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LS483375.1\|SQG04757.1\|1773135_1773750_-\|putative-integral-membrane-protein	unknown	unknown	gnl\|CDD\|227865

Protein	Function_ID	Function_description	E-value
LS483375.1\|SQG04744.1\|1756459_1758073_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483375.1\|SQG04740.1\|1752592_1753411_-\|membrane-protein	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.99533e-92
LS483375.1\|SQG04743.1\|1755979_1756390_-\|Uncharacterised-protein	gnl\|CDD\|379638	pfam14526, Cass2, Integron-associated effector binding protein. This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.	2.04011e-08
LS483375.1\|SQG04755.1\|1770211_1771495_-\|DNA-binding-response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.58069e-110
LS483375.1\|SQG04745.1\|1758513_1759458_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	2.62602e-145
LS483375.1\|SQG04756.1\|1771504_1773139_-\|histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	2.08269e-63
LS483375.1\|SQG04750.1\|1764433_1764844_-\|peptide-deformylase	gnl\|CDD\|181704	PRK09218, PRK09218, peptide deformylase; Validated.	3.29393e-92
LS483375.1\|SQG04746.1\|1759618_1761376_-\|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.58574e-172
LS483375.1\|SQG04758.1\|1773902_1775363_-\|ABC-transporter-substrate-binding-protein-SP0092	gnl\|CDD\|378792	pfam12010, DUF3502, Domain of unknown function (DUF3502). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 140 amino acids in length. This domain is found associated with pfam01547.	3.20107e-43
LS483375.1\|SQG04741.1\|1753412_1754405_-\|ATP-binding-transport-protein	gnl\|CDD\|226952	COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	0
LS483375.1\|SQG04754.1\|1768695_1770078_-\|6-phospho-beta-glucosidase	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
LS483375.1\|SQG04748.1\|1763124_1763583_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.8344e-09
LS483375.1\|SQG04742.1\|1754690_1755572_-\|fructose-bisphosphate-aldolase	gnl\|CDD\|180926	PRK07315, PRK07315, fructose-bisphosphate aldolase; Provisional.	0
LS483375.1\|SQG04747.1\|1761365_1763132_-\|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.61091e-139
LS483375.1\|SQG04739.1\|1751805_1752591_-\|ABC-transporter-permeae	gnl\|CDD\|226218	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.57355e-109
LS483375.1\|SQG04751.1\|1764892_1765792_-\|putative-fructokinase	gnl\|CDD\|366120	pfam00480, ROK, ROK family.	2.86474e-84
LS483375.1\|SQG04753.1\|1766672_1768484_-\|glucosamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LS483375.1\|SQG04757.1\|1773135_1773750_-\|putative-integral-membrane-protein	gnl\|CDD\|227865	COG5578, COG5578, Predicted integral membrane protein [Function unknown].	6.81231e-28

>LS483375.1|SQG04748.1|1763124_1763583_-|MarR-family-transcriptional-regulator
MEKPLLEFKRFGRKTQRIIEKRAKVCGMEFMGGPQGQVLHIVSHRAKRGLSTFIRDIEHELDISKSVASNLIKRMEKNGSIFLEVSETDKRAKMIHLTAQSKQQLKELHDFFNEIDRCLLQGVSEEELATFTLVMAKFHQNIEKLESEDANV
>LS483375.1|SQG04747.1|1761365_1763132_-|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component
MFKLFKRLTSKEIGLILMTVVFICLTVYLELEVPTYMSEITTLLQTPGTTTGELWVPGLKMLGLSFASLFSLVIAGFVSSRMASSYTTRLREDIFNRVLDYSDSEIKKFSIPSLLTRTTNDITQIQVFIAMGLQVVFRGSIMAIWAMTKVVGKSDAWLIAVLVAVAAIILMTIVLVTLAFPKQSIVQTLTDKLNSVTRESLTGIRVVRAYNAEDYQDAKFGAANDEVTSLNIFINRFMSLFNPIMSGISSGLTLAIYWIGAYLIHSAASADKLGLFSDMVVFMSYGMQVVIGFLLMGALFIVLPRTLVSAGRINKVLALDSSIKEKDQAQTEGQSKGQVTFEDVSFRYAKNSEAVIEHVSFTAKAGETIAFIGSTGSGKSTLVNLIPRFYDVTEGRILVDGVDVRDYELKALRNKVGYIPQKAVLFSGTIASNLDFGESMETPLDEEKMWEALELAQAKSFVEEKEAGLESEVSQGGTNYSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRKELAEQTQHMTKLIVAQRISTIMDADQILVLDNGKVVGQGTHKELLATNEVYQEIAYSQLSKEELENGR
>LS483375.1|SQG04746.1|1759618_1761376_-|ABC-type-multidrug/protein/lipid-transport-system,-ATPase-component
MEDKKISLFTQMKPYIKGFQLPFVIAVTGAIISSIITVFGPYKLREITNLITEGLVGEMDLGAISNIGFFLAFLYVVGSLINYAQGYAISDMIQHFSKRLRTAIAEKINRLPLSYFDSHSQGDTLSRVTNDVDTVGQSLTQSLGTLISSVLLLIAVLFMMFYTNVVLSFVTIGSVLLGFVFSAVLMAKSQRYFQEQQSNLAAINGYVEEMYSGHNVITSYNGAEKTRLAFNALNQNLYTSMWKSQFISGIMFPLMNFVGNFGYVMVVIVGATMAINGSISMGTIVAFMVYVRIFSQPLSQIAQGITTLQSASAAMGRVFEFLAEADMEDDSHKLQQLTNVKGHVQFKDVFFGYNPDKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMKFYDIERGQIMIDGVDIKDMQRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKDITDQAVVEAAKAVGVHHFIMTLPDGYDTVLDDTVSLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGNHDQLMEQGGFYADLYNSQFVEEDQE
>LS483375.1|SQG04745.1|1758513_1759458_-|mannose-6-phosphate-isomerase
MSEPLFLQSVMHEKIWGGTKLRDEFGYEIPSDKVGEYWAISAHPNGVSTVKNGRFAGQKLDTLYAEHRELFGDRSEPVFPLLTKILDANDWLSVQVHPDDAYGLKNEGELGKTECWYIIAADEGAEIIYGHNAKSKEELREQIESKNWDQLLTKVKVKAGDFFYVPSGTMHAIGSGILILETQQSSDTTYRVYDFDRKDDAGNLRELHLEKSIDVLNIGEPANSRPVNLQVDNLSSTLLVANDFFAVYKWELTGQADFTKTADYTLNSVLNGQGQLTVDGQVYPIHKGDHFILPSDVASWKLEGHDLEMIVSHP
>LS483375.1|SQG04744.1|1756459_1758073_-|CTP-synthetase
MSTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINIDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLRKERKGEYLGATVQVIPHITDALKDKIKRAARTTDSDVIITEVGGTVGDIESLPFLEALRQMKADVGADNVMYIHTTLLPYLKAAGEMKTKPTQHSVKELRGLGIQPNMLVIRTEQPVGQNIKNKLAQFCDVAPEAVIESLDVEHLYQIPLNLQAQKMDQIVCDHLKLDVPAADMTEWSAMVEKVMNLKKQVHIALVGKYVELPDAYISVVEALKHAGYANDAEVKIDWIDANRVTAENVAELLGSADGIIVPGGFGQRGTEGKIQAIRYAREQDVPMLGICLGMQLTCVEFARHVLELADANSAELNPDTPYPIIDLMRDQIDVEDLGGTLRLGLYPSKLKHGSKAAAAYDHQEVVQRRHRHRYEFNNDFREQFEAAGFVFSGVSPDNRLVEIVEIPENKFFVACQYHPELSSRPNRPEGLYTAFITAAVEKSSER
>LS483375.1|SQG04743.1|1755979_1756390_-|Uncharacterised-protein
MFLNILASIRTNNFQDEHCIEKIQTLWQEQEGAVKEAFAQGEPVYAVYHDYASDYKGDYSLSICRLTDGDVYDFDTSEQTYQVFEADKEDPQAILHAWQRIWQAEETGELHRGYTFDFEKYDPDQTVAVFIATQQS
>LS483375.1|SQG04742.1|1754690_1755572_-|fructose-bisphosphate-aldolase
MAIVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKALIENLVESMGITVPVAIHLDHGHYEDALECIEVGYTSIMFDGSHLPLEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVATGIDFLAAGIGNIHGPYPANWEGLDLDHLKKLTEALPGFPIVLHGGSGIPDDQIQAAIKLGVAKVNVNTECQIAFANATRQFVREYDANEAEYDKKKLFDPRKFLKPGFEAITAAVEERIDVFGSEGKA
>LS483375.1|SQG04741.1|1753412_1754405_-|ATP-binding-transport-protein
MAMIEVEHLQKNFVKTVKEPGLKGALRSFIHPEKQTFEAVKDLTFEVPKGQILGFIGANGAGKSTTIKMLTGILKPTSGFCRINGKIPQDNRQDYVKDIGVVFGQRTQLWWDLALQETYTVLKEIYDVPDSLFHKRMDFLNEVLDLKEFIKDPVRTLSLGQRMRADIAASLLHNPKVLFLDEPTIGLDVSVKDNIRRAITQINQEEETTILLTTHDLSDIEQLCDRIFMIDKGQEIFDGTVSQLKENFGKMKTLSFELVPGQSHLLSHYEGFPDMTIDRQGNSLNIEFDSSRYQSADIIKQTLSDFEIRDLKMEDTDIEDIIRRFYRKEL
>LS483375.1|SQG04740.1|1752592_1753411_-|membrane-protein
MVKLWRRYKPFINAGIQELISYRVNFLLYRIGDVMGAFVAFYLWKAVFDSSQESLIQGFSMADITLYIIMSFVTNLLTKSDSSFMIGEEVKDGSIIMRLLRPVHFAASYLFTELGSKWLIFVSVGLPFLCVIVLMKILSGQGIVEVMGLTVLYLFSLMLAYLINFFFNICFGFSAFVFKNLWGSNLLKTSIVAFMSGSLIPLAFFPKVVSDILSFLPFSSLIYTPVMIIVGKYDASQILQALLLQFFWFLVMVGLSQLIWKRVQSFITIQGG
>LS483375.1|SQG04739.1|1751805_1752591_-|ABC-transporter-permeae
MKKYQRMHLIFIRQYIKQIMEYKVDFVVGVLGVFLTQGLNLLFLNVIFQHIPSLEGWTFQEIAFIYGFSLIPKGLDHLFFDNLWALGQRLVRKGDFDKYLTRPINPLFHILVETFQIDALGELLVGGILLATTVSSIAWTLPKFLIFLVCIPFATLIYTSLKIATASIAFWTKQSGAMIYIFYMFNDFAKYPISIYNSLLRWLISFIVPFAFTAYYPASYFLQDKNGLFNIGGLIVISLVFFVISLKLWDRGLDAYESAGS
>LS483375.1|SQG04749.1|1763854_1764424_-|Uncharacterised-protein
MKVYKRDGSTFYFIGFLLLLGIFFTMGFASLDKQTTALESQNNANQIIYRNPISKEDERSGQTSEESNVMLNMVYWGVGIIAILMFVLGYISNHRPPILEMDQSGMRLRGLSDKSEKFFLWQEIEKIEYDLYRSHGIFSEPTIRILYFYPKDQDASAISLNLDDVKDVSFNELHQQISELAPHIKWLFP
>LS483375.1|SQG04750.1|1764433_1764844_-|peptide-deformylase
MQQAIVKDILFLQQKSEVAVKSDLYLAQDLQDTLLANQDNCVGLAANMIGVKKRVIIFMYGMVPIIMFNPVLRAKSGPYQTEEACLSFVGSRSTTRYQEITVDYLDRNWQPQTITLKDFPAQICQHELDHLEGILI
>LS483375.1|SQG04751.1|1764892_1765792_-|putative-fructokinase
MTKLYGSLEAGGTKFVCAVGDEKFEIVEKTQFPTTTPIETLDKTIEFFSRFDNLAGLAVGSFGPIDIDQNSKTYGFITTTPKPHWANVDIVGVLRRALNVPIYFTTDVNSSAFGEVVARNNAGGRIENLVYYTIGTGIGAGAIQRGEFIGGAGHPEMGHYYVAKHPMDVEKEFNGVCPFHNGCLEGLAAGPSLEARTGIRGENIELNSSVWDIQAYYIAQAAIQATVTFRPDVIVFGGGVMAQQHMLDRVREKFTVLLNGYLPVPDVRDYIVTPAVAGNGSATLGNFVLAKEISERHAK
>LS483375.1|SQG04752.1|1766032_1766557_-|Uncharacterised-protein
MKKKGNVITLIVGLVLGSSFLVRTFLIYQAREAKRQEVAKVKDVQKTIQSIDEKRSEEVKKQLSKTLSSALASNSAYEKYTQIDNQYALGVRGGAFYLVTLSTKEERLLEGVDQAFSTTYKDEDSGENGVALLGHKDGAWHILDEKGETIITLEQTDISPESKMIIKNNTVSFQ
>LS483375.1|SQG04753.1|1766672_1768484_-|glucosamine--fructose-6-phosphate-aminotransferase
MCGIVGVVGNRNATDILMQGLEKLEYRGYDSAGIFVTTGKNSSLVKSVGRIADLRSKIGIDVAGSTGIGHTRWATHGKPSESNAHPHRSETGRFVLVHNGVIENYLEIKEEYLAGHHFKGQTDTEIAVHLIGKFVEEDGLSVLEAFKKALHIIRGSYAFALVDSEDSEVIYVAKNKSPLLVGLGEGYNMVCSDAMAMIRETNQFMEIHDQELVIVRKDSVEVQDYDGNLQERESYTAELDLSDIGKGTYPYYMLKEIDEQPTVMRKLIQAYTDENGQVVVDQAIVKAVQEADRIYILAAGTSYHAGFASKKMLEELTDTPVELGISSEWGYGMPLLSKKPLFIFISQSGETADSRQVLVKANEMGIPSLTVTNVPGSTLSREANHTMLLHAGPEIAVASTKAYTAQIAALAFLAKAVGDANASEKAAAFDLVHELSLVAQSIESTLSEKELIESKVDNLLGTTRNAFYIGRGQDYYVAMEASLKLKEISYIQCEGFAAGELKHGTIALIEEGTPVLALLSDPILANHTRGNIQEVAARGAKVLTIAEENVAKETDDIVLTTVHPYLSPISMVVPTQLVAYFATLHRGLDVDKPRNLAKSVTVE
>LS483375.1|SQG04754.1|1768695_1770078_-|6-phospho-beta-glucosidase
MLTFPKDFVWGSSTSGPQTEGRVPGDGKGDNLWDYWYQVEPNRYYNEIGPEQTSTFYQHWEQDIDLLVETGHTAFRTSIQWSRIFPQGRGEVNPQGVAFYRQVFEAIKAKGIRLLVNLYHFDLPFALQEDGDGWENKATIKAYVDYARFCFETYGDLVDQWITFNEPIVPVEFGYFYDAHYPHKVDAKAAVQVAYHTQLASSLAVKACHELLPDSKIGIVLNLTPAYPRSQHPADVKAAHIADLFQAQSFLDPSVLGTYPEELVEILSEHDLLPDYTAEELELIREHTVDFLGVNYYQPLRVMAPRFAKHPDSPLLPEHFYESYVMPGRKINPHRGWEIYEQGIYDIAQNIKENYGNIEWMLTENGMGVEGEERFRKDGFIQDDYRIDFVKGHLRQLHRAIQDGANCTGYLMWTFIDCWSWLNSYKNRYGLIELNLETQERIIKKSGYWFKELSQNNGFE
>LS483375.1|SQG04755.1|1770211_1771495_-|DNA-binding-response-regulator
MHKVLLVDDEYMITEGLKVLIPFEKWNMEVVATANDAEEALDYVKNHPVDLVITDVNMPGMNGLEMIAQMKESLPKLAFIILSGYQEFEYVKKALNLQVADYLVKPVNKVELAAILEKLSQQFDQSSHYQMEAIFQDGLSEEDLTRLLEKEGTIWLGASRIPQGIASTSYSVSGQTLYLFLSHTKEESLYQIELEPPYKENLQQFKSNLEKVVFYGTVGLQQADPLFQYYEPMYRVIIQGNINQILDELDLLKGVVLSHTPRISITKQLFIQFMMDVYHLFEHLKPDDMTSIIKEIEGMMSFEDLLDYIKQKLTHLFAQYRMNENVASVLEVIGRDYQKDLSLKDISKDLFINPVYLGQLIKRETNSTFAELLNKQRIKAAQQLLLSTNDSIEDVCYAVGYSNVGYFYKVFRKLCGKSPKAYRQQVD
>LS483375.1|SQG04756.1|1771504_1773139_-|histidine-kinase
MKKFWLNSLLRVYAMTMFIIVGFVALLISYASWQSKVQEVTETSQRISTRLVDEVESYYQRGVQITKSLVGNQAKLEGVYNYFTMSPSEYIYWRLNNGLLGIVEVSLHENIADIYLQNDFVAGFDIALQDYKTVFVSTRQKQGGMQVEASKYKPAKNAFPIPIYDSVTSNHIGVVYLTIDSQVFEQTIDNIRNTTPVLVKITSPFQKNMLTFGEGKSKNWLVKETPHGYGVQVAVPEHYVLERSLVNAIAIVAISTILTGSLYLILQRVFRNYQRQVIDLVDTIQAIGQGDSHSRIETATKERELLLIADNTNTMLDNLDRNIHDIYQLQLSQKDANMRALQAQINPHFMYNTLEFIRMYAVMKSQEELADIIYEFSSLLRNNISDETQVTLESELEFCRKYSYLCMVRHPNSVAYGFTIAEELKGMIIPKFTIQPLVENYFVHGVDYRRKDNVISVKVLKKSDAVQIIVQDNGCGIKADKLAEIQQILAKRQLENSENKEKRTSIGIINIHERFLLFFGDRYSIAVESGENKGVRYIIEIKDE
>LS483375.1|SQG04757.1|1773135_1773750_-|putative-integral-membrane-protein
MGKFIEFIFQKIYMAMLASGIFLVLTLCGGVLFGLAPASTVLMTLFAQYRYDYKAYKWQEAWSLFKENFFRSNQVFYTLLSIEAIFLYGLYLLVQLPQSILTVIISILNLLLALLLPLAYAVYLKLQVYFELSYVNSMKLSFIGMFLNIGAMFKIAFGTAMIIAIFYYMPALVFFVFLGAWHFFISDLLEPVYQLIASRLVDKP
>LS483375.1|SQG04758.1|1773902_1775363_-|ABC-transporter-substrate-binding-protein-SP0092
MKKWQKVALFSASALLITALAACGSSKSSSSENGPTTIKMYQIGDKPDNLDKLLENANKILEKKVNAKLEMQYLGWGDYSKKMSVITSSGENYDIAFADNYVVTAQKGAYADLTDLYKKEGKELYKALDPAYIKGNTVNGKIYAVPVAANVASSQNFAFNGPLLEKYGIDISNVNSYETLEPVLKAIKEKDPNVVPFAIGKNFIPSENFDYPVANGLPFVIDMEGDTTKIVNRYEVPRFVEHLKTLHKFYNAGYIPKDVATSDTTYEHNSDTWLVREETVGPADYGNSLLSRVANRKIEIKPITKFIKKNQTTQVANFVISNNSKNKEKAMQVLNELNTNPELLNGLVYGPEGENWEKVKGSENRVKVLDGYNGNTHMSGWNTGNNWILYINENVTDQQIEDSKKELAEAKESPALGFIFNTEPVKSDITAVTNTMQQFDTAINTGTVDPEKAIPELMEKLKSEGAYDRVLKEMQKQYDEFLAAKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

192063 : 255284

Streptococcus_phage(50.0%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG03248.1\|192063_192981_-\|protease	protease	NA	NA	NA	NA
SQG03249.1\|193326_194205_+	ribosome-associated GTPase	NA	NA	NA	NA
SQG03250.1\|194222_194882_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
SQG03251.1\|194874_195507_+	thiamine pyrophosphokinase	NA	NA	NA	NA
SQG03252.1\|195508_196765_+	competence-induced protein Ccs50	NA	NA	NA	NA
SQG03253.1\|196754_197696_+	cmp-binding-factor 1	NA	NA	NA	NA
SQG03254.1\|197761_198607_+	pur operon repressor	NA	NA	NA	NA
SQG03255.1\|198621_199161_+	Uncharacterised protein	NA	NA	NA	NA
SQG03256.1\|199405_199819_+	30S ribosomal protein S12	NA	NA	NA	NA
SQG03257.1\|199838_200309_+	30S ribosomal protein S7	NA	NA	NA	NA
SQG03258.1\|200727_202809_+	elongation factor G	E4ZFJ7	Streptococcus_phage	2.4e-62	28.2
SQG03259.1\|203041_204052_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
SQG03260.1\|204297_209046_+	glycosyl hydrolase family LPXTG cell wall surface protein	NA	NA	NA	NA
SQG03261.1\|209362_210562_+	phosphoglycerate kinase	NA	NA	NA	NA
SQG03262.1\|210742_215476_+	streptococcal surface protein A	NA	NA	NA	NA
SQG03263.1\|215722_216373_+	putative peptidoglycan hydrolase and general stress protein	NA	NA	NA	NA
SQG03264.1\|216515_217046_+	membrane protein	NA	NA	NA	NA
SQG03265.1\|217334_217700_+	MerR family transcriptional regulator	NA	NA	NA	NA
SQG03266.1\|217729_219076_+	glutamate-ammonia ligase	NA	NA	NA	NA
SQG03267.1\|219129_219534_+	histone acetyltransferase HPA2	NA	NA	NA	NA
SQG03268.1\|219768_221103_+	proton-dependent manganese transporter group C beta 2	NA	NA	NA	NA
SQG03269.1\|221311_221602_+\|transposase	transposase	A0A1X9I5T2	Streptococcus_phage	3.0e-24	81.8
SQG03270.1\|221541_221817_+\|transposase	IS1562 transposase	A0A1X9I5T2	Streptococcus_phage	1.9e-31	69.2
SQG03271.1\|221978_222761_+\|transposase	ISSag8, transposase	A0A1X9I5T2	Streptococcus_phage	1.2e-102	76.2
SQG03272.1\|222788_224471_-	metallo-beta-lactamase superfamily protein 1	NA	NA	NA	NA
SQG03273.1\|224474_224705_-	Protein of uncharacterised function DUF1447	NA	NA	NA	NA
SQG03274.1\|224981_225668_+	glycoprotein endopeptidase	NA	NA	NA	NA
SQG03275.1\|225664_226117_+	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA
SQG03276.1\|226106_227117_+\|protease	glycoprotease family protein	NA	NA	NA	NA
SQG03277.1\|227126_227822_+	transport protein-like protein	NA	NA	NA	NA
SQG03278.1\|227811_228144_+	integral membrane protein	NA	NA	NA	NA
SQG03279.1\|228252_228999_+	methyltransferase	NA	NA	NA	NA
SQG03280.1\|229329_229572_-	Uncharacterised protein	NA	NA	NA	NA
SQG03281.1\|229660_229969_+	putative lipoprotein	NA	NA	NA	NA
SQG03282.1\|230068_230809_+	MerR family transcriptional regulator	NA	NA	NA	NA
SQG03283.1\|230864_232040_-	flavoprotein	A0A2H4PQX1	Staphylococcus_phage	1.5e-16	61.3
SQG03284.1\|232306_232801_+	DNA-binding protein	NA	NA	NA	NA
SQG03285.1\|232856_234617_+	glycerophosphoryl diester phosphodiesterase family protein	I6XE30	Staphylococcus_phage	1.1e-07	24.8
SQG03286.1\|234658_234958_-	hypothetical cytosolic protein	NA	NA	NA	NA
SQG03287.1\|235149_235557_+	putative lipoprotein	NA	NA	NA	NA
SQG03288.1\|235589_237869_-	x-prolyl-dipeptidyl aminopeptidase	NA	NA	NA	NA
SQG03289.1\|237972_238824_+	glycerol uptake facilitator protein-like protein	M1HQB9	Paramecium_bursaria_Chlorella_virus	2.3e-16	25.2
SQG03290.1\|238962_240243_+	membrane protein	NA	NA	NA	NA
SQG03291.1\|240370_241108_+	proteinase	NA	NA	NA	NA
SQG03292.1\|241104_242040_+	beta-lactamase-like protein	NA	NA	NA	NA
SQG03293.1\|242169_243048_+	mevalonate kinase	NA	NA	NA	NA
SQG03294.1\|243029_243977_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
SQG03295.1\|243966_244986_+	phosphomevalonate kinase	NA	NA	NA	NA
SQG03296.1\|244969_245974_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA
SQG03297.1\|246019_247285_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
SQG03298.1\|247281_248460_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
SQG03299.1\|248647_248989_-	membrane protein	NA	NA	NA	NA
SQG03300.1\|249107_249866_-	membrane spanning protein	NA	NA	NA	NA
SQG03301.1\|250003_252319_-	pyruvate formate-lyase	A0A2P0VNR5	Tetraselmis_virus	5.4e-116	33.3
SQG03302.1\|252568_253633_+	DNA polymerase IV	NA	NA	NA	NA
SQG03303.1\|253844_254171_+	Uncharacterised protein	NA	NA	NA	NA
SQG03304.1\|254489_255284_+\|protease	CAAX amino protease	NA	NA	NA	NA

DBSCAN-SWA_2

643061 : 654694

Streptococcus_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG03666.1\|643061_645713_+\|tRNA	valyl-tRNA synthetase	A0A1V0S951	Catovirus	1.2e-151	41.1
SQG03667.1\|645713_647210_+	Uncharacterised protein	NA	NA	NA	NA
SQG03668.1\|647271_648492_+	cytosine-specific methyltransferase	V5URQ5	Oenococcus_phage	3.2e-131	58.7
SQG03669.1\|648562_650146_+	Uncharacterised protein	V5US45	Oenococcus_phage	7.0e-22	31.3
SQG03670.1\|650217_650511_-	Uncharacterised protein	NA	NA	NA	NA
SQG03671.1\|650488_650863_-	YolD-like protein	A0A1B0RXA8	Streptococcus_phage	1.1e-13	36.6
SQG03672.1\|650859_652275_-	ImpB/MucB/SamB family protein	M1Q231	Streptococcus_phage	2.5e-172	63.6
SQG03673.1\|652279_652957_-	putative transcriptional repressor	Q6DMX1	Streptococcus_phage	7.3e-53	46.5
SQG03674.1\|653099_653588_+	Uncharacterised protein	NA	NA	NA	NA
SQG03675.1\|653670_654210_+	methyltransferase	NA	NA	NA	NA
SQG03676.1\|654199_654694_+	phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.0e-16	34.0

DBSCAN-SWA_3

1510581 : 1519994

Streptococcus_phage(88.89%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG04514.1\|1510581_1512582_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SEZ7	Hokovirus	3.0e-86	31.8
SQG04515.1\|1513109_1513937_+	exodeoxyribonuclease	M1PSC0	Streptococcus_phage	1.9e-127	81.0
SQG04516.1\|1513948_1514335_+	glyoxalase	NA	NA	NA	NA
SQG04517.1\|1514515_1515145_-	endonuclease III	NA	NA	NA	NA
SQG04518.1\|1515239_1515593_-	ArsC family transcription regulator	M1PLC0	Streptococcus_phage	3.0e-34	57.3
SQG04519.1\|1515602_1516085_-	methylated-DNA-[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.7e-56	64.6
SQG04520.1\|1516147_1517002_-	tetrapyrrole methylase family protein	M1PLC5	Streptococcus_phage	1.0e-99	65.8
SQG04521.1\|1517004_1517328_-	DNA replication intiation control protein YabA	M1PFV3	Streptococcus_phage	1.5e-32	71.0
SQG04522.1\|1517342_1518242_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.6e-82	54.8
SQG04523.1\|1518238_1518877_-	thymidylate kinase	M1PSC7	Streptococcus_phage	1.3e-75	65.6
SQG04524.1\|1519130_1519994_+	YitT family protein	M1Q1P6	Streptococcus_phage	2.0e-95	61.0

DBSCAN-SWA_4

1724503 : 1732522

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG04707.1\|1724503_1724884_-	Uncharacterised protein	A0A1W6JNL0	Staphylococcus_phage	2.4e-05	28.8
SQG04708.1\|1725112_1725472_+	lipoprotein	NA	NA	NA	NA
SQG04709.1\|1725485_1725785_+	Uncharacterised protein	NA	NA	NA	NA
SQG04710.1\|1725823_1727041_-	endonuclease	NA	NA	NA	NA
SQG04711.1\|1727049_1727514_-	putative phage transcriptional regulator	NA	NA	NA	NA
SQG04712.1\|1727782_1729330_+	cytosine-specific methyltransferase	A0A191SAU1	Nostoc_phage	1.4e-27	34.0
SQG04713.1\|1729402_1729735_-	Uncharacterised protein	NA	NA	NA	NA
SQG04714.1\|1729786_1730068_-	Uncharacterised protein	M1PG86	Streptococcus_phage	1.8e-18	58.7
SQG04715.1\|1730060_1730423_-	Uncharacterised protein	A0A1B0RXA8	Streptococcus_phage	6.2e-27	50.8
SQG04716.1\|1730419_1731835_-	SOS responce UmuC protein	M1Q231	Streptococcus_phage	9.8e-201	74.1
SQG04717.1\|1731838_1732522_-	transcriptional regulator	A0A1S5SAF1	Streptococcus_phage	7.6e-58	49.0

DBSCAN-SWA_5

1824579 : 1882905

Bacillus_virus(18.18%)

integrase,tRNA,protease

attL 1834116:1834134|attR 1846617:1846635

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG04798.1\|1824579_1825197_-\|protease	CAAX amino protease	NA	NA	NA	NA
SQG04799.1\|1825393_1826191_+	Uncharacterised protein	NA	NA	NA	NA
SQG04800.1\|1826283_1826727_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
SQG04801.1\|1826794_1829011_-	GTP diphosphokinase	A0A2I2L310	Orpheovirus	8.6e-10	35.8
SQG04802.1\|1829153_1829897_-	16S ribosomal RNA methyltransferase RsmE	NA	NA	NA	NA
SQG04803.1\|1829897_1830854_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
SQG04804.1\|1830993_1831461_-	acetyltransferase	NA	NA	NA	NA
SQG04805.1\|1831457_1831910_-	7,8-dihydro-8-oxoguanine-triphosphatase	NA	NA	NA	NA
SQG04806.1\|1831919_1832390_-	Protein of uncharacterised function (DUF3013)	NA	NA	NA	NA
SQG04807.1\|1832477_1833746_+	recombination factor protein RarA	A0A127AWE7	Bacillus_phage	3.7e-98	45.9
1834116:1834134	attL	NA	NA	NA	NA
SQG04808.1\|1834170_1835310_-\|integrase	integrase/recombinase, phage associated protein	Q9AZR0	Lactococcus_phage	3.1e-40	30.9
SQG04809.1\|1835311_1835500_-	Domain of uncharacterised function (DUF3173)	NA	NA	NA	NA
SQG04810.1\|1835511_1836489_-	replication initiator protein	NA	NA	NA	NA
SQG04811.1\|1836924_1837434_+	transcriptional regulator, xre family protein	X2KUB8	Streptococcus_phage	9.4e-05	32.4
SQG04812.1\|1837749_1838760_+	membrane protein	NA	NA	NA	NA
SQG04813.1\|1838858_1838948_-	Uncharacterised protein	NA	NA	NA	NA
SQG04814.1\|1839241_1839460_-\|integrase	integrase/recombinase, phage associated protein	NA	NA	NA	NA
SQG04815.1\|1839770_1840916_+	putative low temperature requirement protein A	NA	NA	NA	NA
SQG04816.1\|1841071_1842553_-	Mga-like regulatory protein	NA	NA	NA	NA
SQG04817.1\|1842840_1843080_+	integral membrane protein	NA	NA	NA	NA
SQG04818.1\|1843135_1843717_+	membrane protein	NA	NA	NA	NA
SQG04819.1\|1843728_1843899_+	putative lipoprotein	NA	NA	NA	NA
SQG04820.1\|1843916_1844507_+	alkaline shock stress response protein	NA	NA	NA	NA
SQG04821.1\|1844590_1844794_+	CsbD-like protein	NA	NA	NA	NA
SQG04822.1\|1845056_1846121_-	membrane protein	NA	NA	NA	NA
SQG04823.1\|1847313_1847508_+	transcriptional regulator	I3VYZ1	Thermoanaerobacterium_phage	4.7e-05	42.1
1846617:1846635	attR	NA	NA	NA	NA
SQG04824.1\|1847523_1848066_+	membrane protein	NA	NA	NA	NA
SQG04825.1\|1848652_1848883_-	integral membrane protein	NA	NA	NA	NA
SQG04826.1\|1848886_1849135_-	Uncharacterised protein	NA	NA	NA	NA
SQG04827.1\|1849136_1850378_-	aminopeptidase PepS	NA	NA	NA	NA
SQG04828.1\|1850605_1853455_-	CbxX/CfqX family protein	G3MAX6	Bacillus_virus	8.9e-44	38.5
SQG04829.1\|1853630_1853780_-	DNA polymerase III PolC	NA	NA	NA	NA
SQG04830.1\|1853825_1855688_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQG04831.1\|1855681_1857025_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQG04832.1\|1857068_1857191_-	Uncharacterised protein	NA	NA	NA	NA
SQG04833.1\|1857277_1858225_-	putative transcriptional regulator	NA	NA	NA	NA
SQG04834.1\|1858262_1860161_-	putative RuBisCo-expression protein CbbX	G3MAX6	Bacillus_virus	2.0e-39	36.2
SQG04835.1\|1860249_1864638_-	DNA polymerase III PolC	A0A0K2SUJ2	Clostridium_phage	4.3e-21	39.7
SQG04836.1\|1864804_1865350_+	putative lipoprotein	NA	NA	NA	NA
SQG04837.1\|1865462_1865930_+	Uncharacterised protein	NA	NA	NA	NA
SQG04838.1\|1866034_1866415_-	superfamily I DNA/RNA helicase	NA	NA	NA	NA
SQG04839.1\|1866505_1868356_-\|tRNA	prolyl-tRNA ligase	A0A2K9L6B6	Tupanvirus	1.6e-06	24.7
SQG04840.1\|1868431_1869694_-\|protease	membrane-associated zinc metalloprotease	NA	NA	NA	NA
SQG04841.1\|1869844_1870648_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
SQG04842.1\|1870656_1871406_-	undecaprenyl pyrophosphate synthase	R9W0U9	Flavobacterium_phage	4.0e-20	38.8
SQG04843.1\|1871664_1871997_-	preprotein translocase subunit YajC	NA	NA	NA	NA
SQG04844.1\|1872169_1874284_-\|protease	ATP-dependent protease, ATP-binding subunit	K4FB40	Cronobacter_phage	2.2e-119	39.4
SQG04845.1\|1874536_1876528_-	PTS system IIABC component	NA	NA	NA	NA
SQG04846.1\|1876708_1878181_+	beta-fructofuranosidase/sucrose 6 phoshate hydrolase	NA	NA	NA	NA
SQG04847.1\|1878161_1879127_+	sucrose regulon regulatory protein	NA	NA	NA	NA
SQG04848.1\|1879199_1880057_-	5'-nucleotidase	NA	NA	NA	NA
SQG04849.1\|1880274_1880700_-	transcription antitermination protein NusB	NA	NA	NA	NA
SQG04850.1\|1880692_1881082_-	alkaline shock protein	NA	NA	NA	NA
SQG04851.1\|1881101_1881662_-	elongation factor P	NA	NA	NA	NA
SQG04852.1\|1881801_1882905_-\|protease	band 7 domain superfamily protein; membrane protease	NA	NA	NA	NA

DBSCAN-SWA_6

2106070 : 2121299

Streptococcus_phage(53.85%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG05071.1\|2106070_2108224_-	ATP-binding transport protein ComA	W8CYL7	Bacillus_phage	1.0e-44	29.5
SQG05072.1\|2108925_2109135_-	phage protein	A0A141E1X9	Streptococcus_phage	4.5e-22	76.6
SQG05073.1\|2109569_2109821_-	Uncharacterised protein	NA	NA	NA	NA
SQG05074.1\|2109996_2110500_-	phage protein	A0A1X9I5V2	Streptococcus_phage	1.9e-45	52.1
SQG05075.1\|2110572_2111097_-	phage protein	A0A1X9I5U4	Streptococcus_phage	5.4e-40	49.7
SQG05076.1\|2111461_2112901_-	phage replication protein	Q9AZI5	Lactococcus_phage	1.1e-63	37.5
SQG05077.1\|2112980_2113841_-	phage protein	A0A1X9I6L2	Streptococcus_phage	5.1e-120	71.0
SQG05078.1\|2114039_2114258_-	phage protein	A0A1X9I5U9	Streptococcus_phage	2.1e-17	64.6
SQG05079.1\|2114250_2114592_-	phage protein	NA	NA	NA	NA
SQG05080.1\|2114588_2114804_-	Uncharacterised protein	NA	NA	NA	NA
SQG05081.1\|2114805_2115009_-	Uncharacterised protein	NA	NA	NA	NA
SQG05082.1\|2115290_2115917_-	phage protein	A0A192Y918	Salmonella_phage	1.2e-14	42.0
SQG05083.1\|2115931_2116129_-	transcriptional regulator, XRE family	A0A1X9I5U5	Streptococcus_phage	5.8e-19	75.4
SQG05084.1\|2116292_2117066_+	Cro/CI family transcriptional regulator	A0A2H4JBP6	uncultured_Caudovirales_phage	9.0e-07	46.7
SQG05085.1\|2117109_2118099_+	Protein of uncharacterised function (DUF3644)	A0A0N9RUA4	Staphylococcus_phage	3.1e-76	46.5
SQG05086.1\|2118444_2119611_+	Integrase/recombinase, phage associated	A0A1X9I5Y5	Streptococcus_phage	3.3e-162	71.4
SQG05087.1\|2119699_2120311_-	30S ribosomal protein S4	NA	NA	NA	NA
SQG05088.1\|2120576_2121299_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.8e-33	38.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483375

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection