CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483394	Streptococcus pyogenes strain NCTC10880 genome assembly, chromosome: 1	1 crisprs	DinG,csm6,cas9,cas1,cas2,csn2,cas3,DEDDh,csa3	1	5	9	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483394_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483394_4

772730-773095

TypeII

II-A,II-B:II-A

Consensus_repeat	Method
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	PILER-CR
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTATGNTGTTTTGAATGGTCCCAAAAC	CRT

5 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LS483394_4

>merge|LS483394|4|772730-773095|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACATTAGCCCTGCAATACTCGCAATGACCGCAGTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACCGTAAATTGAGAGAGTATCCACGCTGGCGGGTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACTGACACACGGTTTAGCGCTAGTCTCTCAACGTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACAAAAGATGAAGACGGAGATAAGCCAACTGTGTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACGCTAGCGAAGATAGAGCTAGACAGACAAAGGTTTTAGAGCTATGCTGTTTTGAATGGTCTCCATTC

>LS483394|4|2|772730-773029|PILER-CR
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	ATTAGCCCTGCAATACTCGCAATGACCGCA
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	CGTAAATTGAGAGAGTATCCACGCTGGCGG
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	TGACACACGGTTTAGCGCTAGTCTCTCAAC
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	AAAAGATGAAGACGGAGATAAGCCAACTGT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC

>LS483394|4|4|772730-773095|CRISPRCasFinder
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	ATTAGCCCTGCAATACTCGCAATGACCGCA
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	CGTAAATTGAGAGAGTATCCACGCTGGCGG
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	TGACACACGGTTTAGCGCTAGTCTCTCAAC
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	AAAAGATGAAGACGGAGATAAGCCAACTGT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	GCTAGCGAAGATAGAGCTAGACAGACAAAG
GTTTTAGAGCTATGCTGTTTTGAATGGTCTCCATTC

>LS483394|4|1|772730-773095|CRT
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	ATTAGCCCTGCAATACTCGCAATGACCGCA
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	CGTAAATTGAGAGAGTATCCACGCTGGCGG
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	TGACACACGGTTTAGCGCTAGTCTCTCAAC
GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC	AAAAGATGAAGACGGAGATAAGCCAACTGT
GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	GCTAGCGAAGATAGAGCTAGACAGACAAAG
GTTTTAGAGCTATGCTGTTTTGAATGGTCTCCATTC

Protein	Signature genes	Signature genes Name	Protein_function
LS483394.1\|SQG39807.1\|765550_766183_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226884
LS483394.1\|SQG39813.1\|775759_777088_+\|Collagen-like-surface-protein	unknown	unknown	gnl\|CDD\|237171
LS483394.1\|SQG39810.1\|771663_771975_+\|CRISPR-associated-Cas2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LS483394.1\|SQG39818.1\|780026_780836_+\|PTS-system,-mannose-specific-IIC-component	unknown	unknown	gnl\|CDD\|226238
LS483394.1\|SQG39798.1\|760711_762067_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
LS483394.1\|SQG39824.1\|783448_784237_+\|response-regulator	unknown	unknown	gnl\|CDD\|227095
LS483394.1\|SQG39817.1\|779518_780010_+\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|225976
LS483394.1\|SQG39801.1\|762190_762832_+\|acetyltransferase-GNAT-Family	unknown	unknown	unknown
LS483394.1\|SQG39820.1\|780832_781660_+\|phospotransferase-system-(PTS),-enzyme-II-component-D	unknown	unknown	gnl\|CDD\|226239
LS483394.1\|SQG39822.1\|781795_783445_+\|two-component-sensor-kinase	unknown	unknown	gnl\|CDD\|225519
LS483394.1\|SQG39816.1\|779066_779492_+\|PTS-system-mannose-specific-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
LS483394.1\|SQG39803.1\|762828_764025_+\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
LS483394.1\|SQG39814.1\|777273_777711_+\|methionine-sulfoxide-reductase-B	unknown	unknown	gnl\|CDD\|234692
LS483394.1\|SQG39808.1\|766661_770768_+\|CRISPR-associated-protein,-Csn1-family	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LS483394.1\|SQG39812.1\|773739_775572_+\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LS483394.1\|SQG39815.1\|777840_778860_+\|hypothetical-membrane-spanning-protein	unknown	unknown	gnl\|CDD\|225411
LS483394.1\|SQG39811.1\|771964_772627_+\|CRISPR-associated-family-protein	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LS483394.1\|SQG39805.1\|764034_764787_+\|oleoyl-[acyl-carrier-protein]-hydrolase	unknown	unknown	gnl\|CDD\|226401
LS483394.1\|SQG39809.1\|770767_771637_+\|cytoplasmic-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LS483394.1\|SQG39806.1\|764786_765551_+\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	gnl\|CDD\|319832

Protein	Function_ID	Function_description	E-value
LS483394.1\|SQG39807.1\|765550_766183_+\|membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	1.90272e-87
LS483394.1\|SQG39813.1\|775759_777088_+\|Collagen-like-surface-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	2.37691e-11
LS483394.1\|SQG39810.1\|771663_771975_+\|CRISPR-associated-Cas2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.09684e-53
LS483394.1\|SQG39822.1\|781795_783445_+\|two-component-sensor-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.69316e-77
LS483394.1\|SQG39798.1\|760711_762067_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
LS483394.1\|SQG39824.1\|783448_784237_+\|response-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	3.72924e-82
LS483394.1\|SQG39817.1\|779518_780010_+\|PTS-system-mannose/fructose-family-transporter-subunit-IIB	gnl\|CDD\|225976	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism].	2.69664e-54
LS483394.1\|SQG39818.1\|780026_780836_+\|PTS-system,-mannose-specific-IIC-component	gnl\|CDD\|226238	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism].	3.81104e-76
LS483394.1\|SQG39820.1\|780832_781660_+\|phospotransferase-system-(PTS),-enzyme-II-component-D	gnl\|CDD\|226239	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism].	1.55707e-109
LS483394.1\|SQG39816.1\|779066_779492_+\|PTS-system-mannose-specific-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	3.64459e-31
LS483394.1\|SQG39803.1\|762828_764025_+\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
LS483394.1\|SQG39814.1\|777273_777711_+\|methionine-sulfoxide-reductase-B	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	3.8741e-84
LS483394.1\|SQG39808.1\|766661_770768_+\|CRISPR-associated-protein,-Csn1-family	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LS483394.1\|SQG39812.1\|773739_775572_+\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LS483394.1\|SQG39815.1\|777840_778860_+\|hypothetical-membrane-spanning-protein	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	4.56596e-103
LS483394.1\|SQG39811.1\|771964_772627_+\|CRISPR-associated-family-protein	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.6851e-120
LS483394.1\|SQG39805.1\|764034_764787_+\|oleoyl-[acyl-carrier-protein]-hydrolase	gnl\|CDD\|226401	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism].	5.5908e-107
LS483394.1\|SQG39809.1\|770767_771637_+\|cytoplasmic-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.48912e-131
LS483394.1\|SQG39806.1\|764786_765551_+\|haloacid-dehalogenase-like-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.37361e-128

>LS483394.1|SQG39811.1|771964_772627_+|CRISPR-associated-family-protein
MNLNFSLLDEPIPLRGGTILVLEDVCVFSKIVQYCYKYEEDSELKFFDRKMKTIKESEIMLVTDILGFDVNSSTILKLIHADLESQFNEKPEVKSMIDKLVATITELIVFECLENELDLEYDEITILELIKSLGVKVETQSDTIFEKCLEILQIFKYLTKKKLLIFVNSGAFLTKDEVASLQEYISLTNLTVLFLEPRELYDFPQYILDEDYFLITKNMV
>LS483394.1|SQG39810.1|771663_771975_+|CRISPR-associated-Cas2-family-protein
MFDMPTDTAEERKAYRKFRKFLLSEGFIMHQFSIYSKLLLNNTANNAMIGRLREHNPNKGNITLLTVTEKQFARMIYLHGERNNCIANSDERLVFLGEAFDES
>LS483394.1|SQG39809.1|770767_771637_+|cytoplasmic-protein
MAGWRTVVVNTHSKLSYKNNHLIFKDAYKTELIHLSEIDILLLETTDIVLSTMLVKRLVDENVLVIFCDDKRLPTAMLMPFYGRHDSSLQLGKQMSWSETVKSQVWTTIIAQKILNQSCYLGACSYFEKSQSIMDLYHGLENFDPSNREGHAARIYFNTLFGNDFSRDLEHPINAGLDYGYTLLLSMFAREVVVSGCMTQFGLKHANQFNQFNFASDIMEPFRPLVDKIVYENRNQPFPKIKRELFTLFSDTFSYNGKEMYLTNIISDYTKKVVKALNNEGKGVPEFRI
>LS483394.1|SQG39808.1|766661_770768_+|CRISPR-associated-protein,-Csn1-family
MDKKYSIGLDIGTNSVGWAVITDDYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLADSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASRVDAKAILSARLSKSRRLENLIAQLPGEKRNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDATLLSDILRVNSEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEDGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVRKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFIYFDTTIGRNRYKSIKEVLDATLIHQSITGLYETRIDLSQLGGD
>LS483394.1|SQG39807.1|765550_766183_+|membrane-protein
MVENTKLLCSWVWLLALAILITIYSTWLWYPLEVDHLKLEQVVFMSKDAILHNYNGLLNYLTNPFVTRLEFANFHSSADGLKHFADVKWLFHLTQVVFLGLLYPTLKTFTQRLKTKRFWLLQKPLILAALFPLMIGLMASFIGFEHFFTLFHKVLFVGDSSWLFDPLKDPVIWILPEVFFLHCFLFFMIVYEIILWSLVGLARWQRLNVE
>LS483394.1|SQG39806.1|764786_765551_+|haloacid-dehalogenase-like-hydrolase
MPYKGYLIDLDGTIYQGKNRIPAGERFIKRLQEKGIPYLLVTNNTTRTPEMVQSMLTNQFHVETGIETIYTATMATVDYMNDMNRGKTAYVIGETGLKSAIAAAGYVEELENPAYVVVGLDSQVTYEMLAIATLAIQKGALFIGTNPDLNIPTERGLMPGAGALNALLEAATRVKPVFIGKPNAIIMNKSLEVLGIQRSEAVMVGDNYLTDIMAGIQNDIATILVTTGFTRPEEVPTLPIQPDHVLSSLDEWRL
>LS483394.1|SQG39805.1|764034_764787_+|oleoyl-[acyl-carrier-protein]-hydrolase
MGLSYQEELTLPFELCDVKSDIKLPLLLDYCLMVSGRQSAQLGRSNNNLLVDYKLVWIVTDYEITIHRLPHFQETITIETKALSYNKFFCYRQFYIYDQEGDLLVDILAYFALLNPDTRKVATIPEDLVAPFKTDFVKKLHRVPKMPLLEQSIDRDYYVRYFDIDMNGHVNNSKYLDWMYDVLGCAFLKTHQPLKMTLKYVKEVSPGGQITSSYHLDQLTSYHQIISDGQLNAQAMIEWRAIKQTESETD
>LS483394.1|SQG39803.1|762828_764025_+|coproporphyrinogen-III-oxidase
MRNQGKWFIHRNILSSKWYNKTMSKKPTSAYVHIPFCTQICYYCDFSKVFIQNQPVDAYLKALIQEFDSYGIRDLKTLYIGGGTPTAITAKQLEYLLNHLERNLNLDDLEEFTIEANPGDLTPEKIAVLQRSAVNRISLGVQTFNNKQLKQIGRSHNEEQIYSTITNLKAAGFHNISIDLIYALPGQTLDQVKENVAKALALDIPHLSLYSLILEHHTVFMNKMRRGKLNLPTEDLEAEMFEYIISEMEANGFEHYEISNFTKPGFESRHNLMYWDNVEYFGCGAGASGYLNGIRYQNRVPIQHYLKAVEAGNARLNEEVLRKEEMMEEELFLGLRKKTGVSIQRFQEKFGMSFEERYGNIVRELQNQGLLVKDDAFVRMTKKGLFLGDSVAERFILD
>LS483394.1|SQG39801.1|762190_762832_+|acetyltransferase-GNAT-Family
MTKQQIEKLADLLPPFAATLYLDMIPEFQEGYASYVYQTPKQDIQKRRIKQLTKNFERLLDTPSFYVMPVTRKTAEQLLADKGLAYHLLSTVAANQVFAAAVNEDQTLFQVLRNGARVAFVILQEKGEFLEMTLGILETVTENEVPAAIVEAVQTYLLADMQEKLPSLSIMVSQESSKLFYQEQGFVLLAKGCKPGNENDSDVCQLLKYFSKP
>LS483394.1|SQG39798.1|760711_762067_+|phosphoglucosamine-mutase
MGKYFGTDGVRGEANVELTPELAFKLGRFGGYVLSQHETERPKVFVARDTRISGEMLESALIAGLLSVGIEVYKLGVLATPGVSYLVRTEKASAGVMISASHNPALDNGIKFFGNDGFKLADDQELEIEALLDAPEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVTTGTDLSGMTVALDTANGAASVSARDVFLDLNAEIAVIGEKPNGLNINDGVGSTHPEQLQELVKETGADLGLAFDGDSDRLIAVDETGEIVDGDRIMFIIGKYLSEKGLLAHNTIVTTVMSNLGFHKALDKQGINKAITAVGDRYVVEEMRSSGYNLGGEQSGHVIIMDYNTTGDGQLTAIQLAKVMKETGKSLSELAAEVTIYPQKLVNIRVENSMKERAMEVPDIANIIAKMEDEMAGNGRILVRPSGTEPLLRVMAEAPTDAEVDYYVDTIADVVRTEIGCDN
>LS483394.1|SQG39812.1|773739_775572_+|GTP-binding-protein-LepA
MNSQDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRHEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGDVDAPLQALIFDSVYDAYRGVILQVRIVNGIVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYVAASIKTVADTRVGDTVTLANNPAKEALHGYKQMNPMVFAGIYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVHTTDEDMIEVSNPSEFPDPTRVAFIEEPYVKAQIMVPQEFVGAVMELSQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYDMSEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKIIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDAKK
>LS483394.1|SQG39813.1|775759_777088_+|Collagen-like-surface-protein
MNKTKQNKTKQNKTKHSLLCRYGLTSAAALLLTFGGASAVKADSRSIRETQEKLYELQEQFPKVEDIYKDNSVLRQTPVYKYLEQLDKSLKSYLQELNGGLHHLKGDQGEPGKQGEQGPRGEVGPAGPRGERGPVGPAGEAGAKGEVGPRGPQGETGPAGPVGPVGPAGKAGAQGPTGPRGERGEKGDAGEQGLRGETGPQGPQGETGPAGPVGPVGPAGKAGEPGAKGDRGETGPAGPVGPRGERGEAGPAGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGKDGQDGKDGLPGKDGKDGKDGKAGQPGQPGKPAPQTPEVPQKPDTAPHTPKTPQIPDQSKDVTPAPQNPSNRGLNKPQTQGGNQLAKTPAAHDTHRQLPATGETTNPFFTAAAVAIMTTAGVVAVAKRQENN
>LS483394.1|SQG39814.1|777273_777711_+|methionine-sulfoxide-reductase-B
METSEELKQRIGDLSYEVTQHAATESPFTGEYDDFFEKGIYVDIVSGEVLFSSLDKFNSGCGWPAFSKPIENRMVTNHDDSSYGMRRVEVKSREAGSHLGHVFSDGPKEAGGLRYCINSAALKFIPYEQMEKEGYAQWLTLFDET
>LS483394.1|SQG39815.1|777840_778860_+|hypothetical-membrane-spanning-protein
MSTHLRKLPGLLLCLLLALPAWCLGHLFPIIGAPVFAILLGMLLALFYEHRDKTKEGISFTSKYILQTAVVLLGFGLNLTQVMAVGMQSLPIIVSTIATALLVVYGSQKWLRIDVNTATLVGVGSSICGGSAIAATAPVIKAKDDEVAKAISVIFFFNMLAALLFPSLGQLLGLSNEGFATFAGTAVNDTSSVTATATAWDALHHSNTLDGATIVKLTRTLAILPITLGLSLYRAKKEHDIVTEENFSLRKSFPRFILFFLLASLITTLMTSLGVSADVFHSLKTLSKFFIVMAMAAIGLNTNLVKLIKTGGQAILLGAICWVAITLVSLAMQLSLGIW
>LS483394.1|SQG39816.1|779066_779492_+|PTS-system-mannose-specific-transporter-subunit-IIA
MKRKFLIGSHGRLASGLQSSIDILAGMGQALETIDAYVDDSDYTSQIDDFIAGVAADEQGLIFTDLLGGSVNQKMVTAVMNSGKDNIFLITNSNLATLLSLVFLKPGEALTKDEIVTVINESQVQLVDLVPETNSEDDFFD
>LS483394.1|SQG39817.1|779518_780010_+|PTS-system-mannose/fructose-family-transporter-subunit-IIB
MITQIRVDDRLIHGQVAVVWTKELNAPLLVVANDEAAKNEITQMTLKMAVPNGMKLLIRSVEESIKLFNDPRAKDKRIFVIVNSVKDACAIAKEVPDLEAVNVANVGRFDKSDPASKVKVTPSLLLNPEEMAAAKELVSLPELDVFNQVLPSNTKVHLSQLVN
>LS483394.1|SQG39818.1|780026_780836_+|PTS-system,-mannose-specific-IIC-component
MLVPATMAALAVLICFGGNYLTGQSMMERPLVVGLVTGLLLGDMKVGILMGASLEALFLGNVNIGGVIAAEPVTATAMATTFTIISHIDQKAAMTLAVPIGMLAAFVVMFLKNVFMNIFAPMVDKAAAANHQGKLVMLHYGTWIIYYLIIASISFIGILVGSGPVNAFVEHIPQNLMNGLSAAGGLLPAVGFAMLMKLLWTNKLAVFYLLGFVLTAYLKLPAVAVAALGAVICVISSQRDLELDAITRGAISKQTTFDSKESEEEDFFA
>LS483394.1|SQG39820.1|780832_781660_+|phospotransferase-system-(PTS),-enzyme-II-component-D
MTSQDNLTKEDRKMLRSVFWRSWTMNASRTGATQYHAVGVIYTLLPVINRFYKTDKDKAEALVRHTTWFNATMHINNFIMGLVASMEKKNSEDPDFDASAITAVKASLMGPISGVGDSFFWGILRVIAAGIGISLASAGSAMGAVVFLLLYNIPAFIIHYYSLYGGYSVGAGFIKKLYESGGIKIVTKTSSMLGLMMVGSMTASNVKFKTILTVAAKGAKEAASIQDYLDQLFIGIVPLMVTLAAFWLLRKKVNINWIMFGIMFLGIILGLLGIC
>LS483394.1|SQG39822.1|781795_783445_+|two-component-sensor-kinase
MRGEQVEEHFKKQLQDDISRHFSYQSLMLSLLLIGLFIIFSLAPQQLGLYRDINATATRYHRLISKQEALLDELGKNSLLPFLNKNLSTADLSKHYFHLRHSSQTSPELLLFSPSQGLLFASNPHLGNVFSKSVYIQEVLRAAHPPKTLFKVAMDSEDGHYLMIIKPMIDQNQLKGYAFLVMSGKDFLHPTKTLTSELVIADKLDNTFTFSNREFIASSLDKINSQYLHHYFVFQDNRAFITRKVALQGGLWLYMYRPLIPMVSVMLFSLISSAVIFVILQRKSSGLANRIAAKNSRAINQMVRDMSAISRQEKRRIDLESQDEFQYLSDQINQMVERLQQLHDKTLDLETQKLLFEKRMLEAQFNPHFLYNTLETILITSHYDSALTEKIVIQLTKLLRYSLTDSSKPVLLKDDLSVIESYLVINQVRFEELQYSINLSPDLDSLAVPKLFLLPLIENAIKYGLKERHDVKINIACYYQDDHIIFSVRDNGSGIDAHHQKVIREQLEAGESHHGLINSYRRLKYHFSEVSLVFDQGDKQFNVSYHVKE
>LS483394.1|SQG39824.1|783448_784237_+|response-regulator
MYKLVIIEDEHIIRKWLRYAIDYKALDILVIGEAKDGKEGAVLIKESQPDIVLTDINMPIMTAFDMFEATKDQTYAKIILSGYADFPNARSAIHYGVLEFLTKPIEKAALWECLKTIIAKIEKQKGSNQKTDACVYIPLPQMTDQIPEVVKDILEWVHAHFQDKISTSRLAHDLGYSESYIYQNIKKHLQMPLSDYINQYRINQAIQLMQQEPDLMVYEIAQAVGIYDYRYFDRVFKKYLGQTVKAFKEEHFMKDTDRSKPC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	LS483394.1	1132651-1132680	2	0.933

1. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to position: 1132651-1132680, mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaag	Protospacer
*****.** *********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448675	Streptococcus phage Javan129, complete genome	11371-11400	0	1.0
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448767	Streptococcus phage Javan467, complete genome	7433-7462	0	1.0
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448942	Streptococcus phage Javan448, complete genome	7432-7461	0	1.0
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	NC_004586	Streptococcus pyogenes phage 315.3, complete genome	7538-7567	0	1.0
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448964	Streptococcus phage Javan502, complete genome	7412-7441	0	1.0
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448943	Streptococcus phage Javan450, complete genome	7433-7462	0	1.0
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448944	Streptococcus phage Javan452, complete genome	11759-11788	0	1.0
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448786	Streptococcus phage Javan509, complete genome	7433-7462	0	1.0
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448963	Streptococcus phage Javan498, complete genome	4022-4051	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448824	Streptococcus phage Javan637, complete genome	15600-15629	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448858	Streptococcus phage Javan166, complete genome	16851-16880	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448775	Streptococcus phage Javan489, complete genome	13906-13935	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448761	Streptococcus phage Javan445, complete genome	16335-16364	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448794	Streptococcus phage Javan525, complete genome	12103-12132	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448944	Streptococcus phage Javan452, complete genome	14282-14311	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448859	Streptococcus phage Javan170, complete genome	16270-16299	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK449002	Streptococcus phage Javan642, complete genome	15555-15584	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448793	Streptococcus phage Javan523, complete genome	14042-14071	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448854	Streptococcus phage Javan146, complete genome	16336-16365	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448760	Streptococcus phage Javan443, complete genome	16335-16364	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448851	Streptococcus phage Javan14, complete genome	16118-16147	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK449003	Streptococcus phage Javan648, complete genome	15555-15584	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448765	Streptococcus phage Javan459, complete genome	12102-12131	0	1.0
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448688	Streptococcus phage Javan161, complete genome	16223-16252	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	NC_004585	Streptococcus prophage 315.2, complete genome	15834-15863	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448965	Streptococcus phage Javan506, complete genome	14881-14910	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448966	Streptococcus phage Javan508, complete genome	15689-15718	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448970	Streptococcus phage Javan516, complete genome	17237-17266	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448959	Streptococcus phage Javan488, complete genome	14881-14910	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448672	Streptococcus phage Javan117, complete genome	11606-11635	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448849	Streptococcus phage Javan128, complete genome	11155-11184	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448772	Streptococcus phage Javan483, complete genome	15704-15733	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448962	Streptococcus phage Javan496, complete genome	6481-6510	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448949	Streptococcus phage Javan460, complete genome	15541-15570	0	1.0
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448957	Streptococcus phage Javan484, complete genome	16657-16686	0	1.0
LS483394_4	4.4\|772964\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772964-772993	30	MK449012	Streptococcus phage Javan94, complete genome	15186-15215	0	1.0
LS483394_4	4.4\|772964\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772964-772993	30	MK448763	Streptococcus phage Javan451, complete genome	13554-13583	0	1.0
LS483394_4	4.4\|772964\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772964-772993	30	MK448777	Streptococcus phage Javan491, complete genome	13436-13465	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448675	Streptococcus phage Javan129, complete genome	13700-13729	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448960	Streptococcus phage Javan492, complete genome	11521-11550	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448762	Streptococcus phage Javan447, complete genome	11648-11677	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448965	Streptococcus phage Javan506, complete genome	13741-13770	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448681	Streptococcus phage Javan141, complete genome	9661-9690	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448970	Streptococcus phage Javan516, complete genome	15440-15469	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448795	Streptococcus phage Javan527, complete genome	17478-17507	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448790	Streptococcus phage Javan515, complete genome	11935-11964	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448959	Streptococcus phage Javan488, complete genome	13741-13770	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448778	Streptococcus phage Javan493, complete genome	11871-11900	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448793	Streptococcus phage Javan523, complete genome	12266-12295	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448845	Streptococcus phage Javan118, complete genome	11476-11505	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448676	Streptococcus phage Javan131, complete genome	16069-16098	0	1.0
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448954	Streptococcus phage Javan476, complete genome	11603-11632	0	1.0
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK449012	Streptococcus phage Javan94, complete genome	8762-8791	1	0.967
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448672	Streptococcus phage Javan117, complete genome	7341-7370	1	0.967
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448837	Streptococcus phage Javan10, complete genome	9037-9066	1	0.967
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448742	Streptococcus phage Javan37, complete genome	9716-9745	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448960	Streptococcus phage Javan492, complete genome	13203-13232	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448762	Streptococcus phage Javan447, complete genome	13330-13359	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448798	Streptococcus phage Javan533, complete genome	14085-14114	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448965	Streptococcus phage Javan506, complete genome	14764-14793	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448955	Streptococcus phage Javan478, complete genome	15356-15385	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448795	Streptococcus phage Javan527, complete genome	19611-19640	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448791	Streptococcus phage Javan517, complete genome	12087-12116	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448953	Streptococcus phage Javan474, complete genome	16700-16729	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448959	Streptococcus phage Javan488, complete genome	14764-14793	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	NC_004587	Streptococcus prophage 315.4, complete genome	12182-12211	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448945	Streptococcus phage Javan454, complete genome	14980-15009	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	NC_003157	Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome	13452-13481	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448962	Streptococcus phage Javan496, complete genome	6364-6393	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448977	Streptococcus phage Javan530, complete genome	12087-12116	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448949	Streptococcus phage Javan460, complete genome	15424-15453	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448783	Streptococcus phage Javan503, complete genome	13003-13032	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448967	Streptococcus phage Javan510, complete genome	14086-14115	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448788	Streptococcus phage Javan511, complete genome	12087-12116	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	NC_004588	Streptococcus prophage 315.5, complete genome	14235-14264	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448862	Streptococcus phage Javan178, complete genome	12088-12117	1	0.967
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448694	Streptococcus phage Javan179, complete genome	15293-15322	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448960	Streptococcus phage Javan492, complete genome	13320-13349	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448762	Streptococcus phage Javan447, complete genome	13447-13476	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448798	Streptococcus phage Javan533, complete genome	14202-14231	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448955	Streptococcus phage Javan478, complete genome	15473-15502	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448795	Streptococcus phage Javan527, complete genome	19728-19757	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448791	Streptococcus phage Javan517, complete genome	12204-12233	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448790	Streptococcus phage Javan515, complete genome	13875-13904	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	NC_004587	Streptococcus prophage 315.4, complete genome	12299-12328	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448945	Streptococcus phage Javan454, complete genome	15097-15126	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	NC_003157	Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome	13569-13598	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448977	Streptococcus phage Javan530, complete genome	12204-12233	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448783	Streptococcus phage Javan503, complete genome	13120-13149	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448967	Streptococcus phage Javan510, complete genome	14203-14232	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448788	Streptococcus phage Javan511, complete genome	12204-12233	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448954	Streptococcus phage Javan476, complete genome	12923-12952	1	0.967
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	NC_004588	Streptococcus prophage 315.5, complete genome	14352-14381	1	0.967
LS483394_4	4.4\|772964\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772964-772993	30	MK448972	Streptococcus phage Javan520, complete genome	12776-12805	1	0.967
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	NC_004585	Streptococcus prophage 315.2, complete genome	13705-13734	1	0.967
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448966	Streptococcus phage Javan508, complete genome	13560-13589	1	0.967
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448772	Streptococcus phage Javan483, complete genome	13575-13604	1	0.967
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448673	Streptococcus phage Javan119, complete genome	12869-12898	1	0.967
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448859	Streptococcus phage Javan170, complete genome	14034-14063	1	0.967
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448688	Streptococcus phage Javan161, complete genome	13988-14017	1	0.967
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448683	Streptococcus phage Javan149, complete genome	14464-14493	1	0.967
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448683	Streptococcus phage Javan149, complete genome	14840-14869	1	0.967
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448973	Streptococcus phage Javan522, complete genome	9400-9429	2	0.933
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448862	Streptococcus phage Javan178, complete genome	7469-7498	2	0.933
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448778	Streptococcus phage Javan493, complete genome	9415-9444	2	0.933
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448790	Streptococcus phage Javan515, complete genome	13758-13787	2	0.933
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448672	Streptococcus phage Javan117, complete genome	11489-11518	2	0.933
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448849	Streptococcus phage Javan128, complete genome	11038-11067	2	0.933
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448933	Streptococcus phage Javan420, complete genome	16336-16365	2	0.933
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK449010	Streptococcus phage Javan90, complete genome	13425-13454	2	0.933
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448833	Streptococcus phage Javan87, complete genome	13425-13454	2	0.933
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448775	Streptococcus phage Javan489, complete genome	14023-14052	2	0.933
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448794	Streptococcus phage Javan525, complete genome	12220-12249	2	0.933
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448953	Streptococcus phage Javan474, complete genome	16817-16846	2	0.933
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448944	Streptococcus phage Javan452, complete genome	14399-14428	2	0.933
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448793	Streptococcus phage Javan523, complete genome	14159-14188	2	0.933
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	MK448765	Streptococcus phage Javan459, complete genome	12219-12248	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448895	Streptococcus phage Javan274, complete genome	8186-8215	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448952	Streptococcus phage Javan472, complete genome	13998-14027	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448849	Streptococcus phage Javan128, complete genome	9247-9276	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	NC_009819	Streptococcus phage P9, complete genome	14275-14304	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448850	Streptococcus phage Javan132, complete genome	14072-14101	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448777	Streptococcus phage Javan491, complete genome	9177-9206	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448858	Streptococcus phage Javan166, complete genome	14879-14908	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448862	Streptococcus phage Javan178, complete genome	10063-10092	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448779	Streptococcus phage Javan497, complete genome	13937-13966	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448976	Streptococcus phage Javan528, complete genome	14121-14150	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448961	Streptococcus phage Javan494, complete genome	14121-14150	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448972	Streptococcus phage Javan520, complete genome	8886-8915	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448968	Streptococcus phage Javan512, complete genome	13937-13966	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448766	Streptococcus phage Javan465, complete genome	15088-15117	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448797	Streptococcus phage Javan531, complete genome	13937-13966	2	0.933
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	NC_004589	Streptococcus prophage 315.6, complete genome	14034-14063	2	0.933
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	JX409894	Streptococcus phage LYGO9, complete genome	32479-32508	3	0.9
LS483394_4	4.3\|772898\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772898-772927	30	JX409895	Streptococcus phage JX01, complete genome	1297-1326	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448971	Streptococcus phage Javan52, complete genome	15045-15074	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448824	Streptococcus phage Javan637, complete genome	13752-13781	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448736	Streptococcus phage Javan35, complete genome	12230-12259	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448956	Streptococcus phage Javan48, complete genome	13632-13661	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448781	Streptococcus phage Javan5, complete genome	14252-14281	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448749	Streptococcus phage Javan39, complete genome	13632-13661	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448938	Streptococcus phage Javan44, complete genome	12230-12259	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448686	Streptococcus phage Javan157, complete genome	13819-13848	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448911	Streptococcus phage Javan34, complete genome	12230-12259	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK449002	Streptococcus phage Javan642, complete genome	13707-13736	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK449003	Streptococcus phage Javan648, complete genome	13707-13736	3	0.9
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448916	Streptococcus phage Javan36, complete genome	12230-12259	3	0.9
LS483394_4	4.2\|772832\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772832-772861	30	MK448727	Streptococcus phage Javan291, complete genome	13889-13918	4	0.867
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	MK448706	Streptococcus phage Javan221, complete genome	9323-9352	6	0.8
LS483394_4	4.4\|772964\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772964-772993	30	MN856077	Bacteriophage sp. isolate 40, complete genome	29999-30028	6	0.8
LS483394_4	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	MK448886	Streptococcus phage Javan254, complete genome	31177-31206	6	0.8
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	AJ609634	Bacteriophage EJ-1 proviral DNA, complete genome	11820-11849	7	0.767
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	NC_005294	Streptococcus prophage EJ-1, complete genome	11820-11849	7	0.767
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	373899-373928	8	0.733
LS483394_4	4.1\|772766\|30\|LS483394\|PILER-CR,CRISPRCasFinder,CRT	772766-772795	30	NZ_CP049320	Caballeronia sp. SBC2 plasmid pSBC2-4, complete sequence	303366-303395	8	0.733

1. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 0, identity: 1.0

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcaatgaccgca	Protospacer
******************************

2. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448767 (Streptococcus phage Javan467, complete genome) position: , mismatch: 0, identity: 1.0

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcaatgaccgca	Protospacer
******************************

3. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448942 (Streptococcus phage Javan448, complete genome) position: , mismatch: 0, identity: 1.0

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcaatgaccgca	Protospacer
******************************

4. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NC_004586 (Streptococcus pyogenes phage 315.3, complete genome) position: , mismatch: 0, identity: 1.0

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcaatgaccgca	Protospacer
******************************

5. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448964 (Streptococcus phage Javan502, complete genome) position: , mismatch: 0, identity: 1.0

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcaatgaccgca	Protospacer
******************************

6. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448943 (Streptococcus phage Javan450, complete genome) position: , mismatch: 0, identity: 1.0

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcaatgaccgca	Protospacer
******************************

7. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 0, identity: 1.0

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcaatgaccgca	Protospacer
******************************

8. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448786 (Streptococcus phage Javan509, complete genome) position: , mismatch: 0, identity: 1.0

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcaatgaccgca	Protospacer
******************************

9. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448963 (Streptococcus phage Javan498, complete genome) position: , mismatch: 0, identity: 1.0

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcaatgaccgca	Protospacer
******************************

10. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448824 (Streptococcus phage Javan637, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

11. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

12. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

13. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448761 (Streptococcus phage Javan445, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

14. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

15. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

16. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

17. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK449002 (Streptococcus phage Javan642, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

18. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

19. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

20. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448760 (Streptococcus phage Javan443, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

21. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

22. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK449003 (Streptococcus phage Javan648, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

23. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

24. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 0, identity: 1.0

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcgg	Protospacer
******************************

25. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

26. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

27. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

28. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

29. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

30. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

31. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

32. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

33. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448962 (Streptococcus phage Javan496, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

34. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

35. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448957 (Streptococcus phage Javan484, complete genome) position: , mismatch: 0, identity: 1.0

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagcgctagtctctcaac	Protospacer
******************************

36. spacer 4.4|772964|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 0, identity: 1.0

aaaagatgaagacggagataagccaactgt	CRISPR spacer
aaaagatgaagacggagataagccaactgt	Protospacer
******************************

37. spacer 4.4|772964|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448763 (Streptococcus phage Javan451, complete genome) position: , mismatch: 0, identity: 1.0

aaaagatgaagacggagataagccaactgt	CRISPR spacer
aaaagatgaagacggagataagccaactgt	Protospacer
******************************

38. spacer 4.4|772964|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 0, identity: 1.0

aaaagatgaagacggagataagccaactgt	CRISPR spacer
aaaagatgaagacggagataagccaactgt	Protospacer
******************************

39. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

40. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

41. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

42. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

43. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

44. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448970 (Streptococcus phage Javan516, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

45. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

46. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

47. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

48. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

49. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

50. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448845 (Streptococcus phage Javan118, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

51. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448676 (Streptococcus phage Javan131, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

52. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 0, identity: 1.0

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaag	Protospacer
******************************

53. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK449012 (Streptococcus phage Javan94, complete genome) position: , mismatch: 1, identity: 0.967

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctacaatactcgcaatgaccgca	Protospacer
*********.********************

54. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 1, identity: 0.967

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attggccctgcaatactcgcaatgaccgca	Protospacer
***.**************************

55. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 1, identity: 0.967

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcagtgaccgca	Protospacer
*********************.********

56. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448742 (Streptococcus phage Javan37, complete genome) position: , mismatch: 1, identity: 0.967

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagccctgcaatactcgcagtgaccgca	Protospacer
*********************.********

57. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

58. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

59. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

60. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

61. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

62. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

63. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

64. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

65. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

66. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

67. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

68. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

69. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448962 (Streptococcus phage Javan496, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

70. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

71. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

72. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

73. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

74. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

75. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgctggcga	Protospacer
*****************************.

76. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgaaagagtatccacgctggcgg	Protospacer
**********.*******************

77. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448694 (Streptococcus phage Javan179, complete genome) position: , mismatch: 1, identity: 0.967

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgaaagagtatccacgctggcgg	Protospacer
**********.*******************

78. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448960 (Streptococcus phage Javan492, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggttgagcgctagtctctcaac	Protospacer
************ *****************

79. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448762 (Streptococcus phage Javan447, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggttgagcgctagtctctcaac	Protospacer
************ *****************

80. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggttgagcgctagtctctcaac	Protospacer
************ *****************

81. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448955 (Streptococcus phage Javan478, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagtgctagtctctcaac	Protospacer
***************.**************

82. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448795 (Streptococcus phage Javan527, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagtgctagtctctcaac	Protospacer
***************.**************

83. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448791 (Streptococcus phage Javan517, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagtgctagtctctcaac	Protospacer
***************.**************

84. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggttgagcgctagtctctcaac	Protospacer
************ *****************

85. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NC_004587 (Streptococcus prophage 315.4, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagtgctagtctctcaac	Protospacer
***************.**************

86. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448945 (Streptococcus phage Javan454, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacgatttagcgctagtctctcaac	Protospacer
*********.********************

87. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NC_003157 (Streptococcus pyogenes strain NIH1 putative methionine sulfoxide reductase gene, complete cds; and integrated temperate phage PhiNIH1.1, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagtgctagtctctcaac	Protospacer
***************.**************

88. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448977 (Streptococcus phage Javan530, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagtgctagtctctcaac	Protospacer
***************.**************

89. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagtgctagtctctcaac	Protospacer
***************.**************

90. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggttgagcgctagtctctcaac	Protospacer
************ *****************

91. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448788 (Streptococcus phage Javan511, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggtttagtgctagtctctcaac	Protospacer
***************.**************

92. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448954 (Streptococcus phage Javan476, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggttgagcgctagtctctcaac	Protospacer
************ *****************

93. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 1, identity: 0.967

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
tgacacacggttgagcgctagtctctcaac	Protospacer
************ *****************

94. spacer 4.4|772964|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 1, identity: 0.967

aaaagatgaagacggagataagccaactgt	CRISPR spacer
aaaagatgaagatggagataagccaactgt	Protospacer
************.*****************

95. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 1, identity: 0.967

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaaa	Protospacer
*****************************.

96. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 1, identity: 0.967

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaaa	Protospacer
*****************************.

97. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 1, identity: 0.967

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaaa	Protospacer
*****************************.

98. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448673 (Streptococcus phage Javan119, complete genome) position: , mismatch: 1, identity: 0.967

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacaaaa	Protospacer
*****************************.

99. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448859 (Streptococcus phage Javan170, complete genome) position: , mismatch: 1, identity: 0.967

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacgaag	Protospacer
**************************.***

100. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448688 (Streptococcus phage Javan161, complete genome) position: , mismatch: 1, identity: 0.967

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacgaag	Protospacer
**************************.***

101. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 1, identity: 0.967

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacgaag	Protospacer
**************************.***

102. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448683 (Streptococcus phage Javan149, complete genome) position: , mismatch: 1, identity: 0.967

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagacgaag	Protospacer
**************************.***

103. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448973 (Streptococcus phage Javan522, complete genome) position: , mismatch: 2, identity: 0.933

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagctctacaatactcgcaatgaccgca	Protospacer
******.**.********************

104. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 2, identity: 0.933

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
atttgccctgcaatactcgcaatgaccaca	Protospacer
*** ***********************.**

105. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448778 (Streptococcus phage Javan493, complete genome) position: , mismatch: 2, identity: 0.933

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
attagctctacaatactcgcaatgaccgca	Protospacer
******.**.********************

106. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 2, identity: 0.933

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccacgttggcga	Protospacer
***********************.*****.

107. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 2, identity: 0.933

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccgcgctggcgt	Protospacer
********************.********

108. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 2, identity: 0.933

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccgcgctggcgt	Protospacer
********************.********

109. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 2, identity: 0.933

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cgtaaattgagagagtatccgcgctggcga	Protospacer
********************.********.

110. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK449010 (Streptococcus phage Javan90, complete genome) position: , mismatch: 2, identity: 0.933

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cggaagttgagagagtatccacgctggcgg	Protospacer
** **.************************

111. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448833 (Streptococcus phage Javan87, complete genome) position: , mismatch: 2, identity: 0.933

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
cggaagttgagagagtatccacgctggcgg	Protospacer
** **.************************

112. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448775 (Streptococcus phage Javan489, complete genome) position: , mismatch: 2, identity: 0.933

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
cgacacacggttgagcgctagtctctcaac	Protospacer
.*********** *****************

113. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448794 (Streptococcus phage Javan525, complete genome) position: , mismatch: 2, identity: 0.933

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
cgacacacggttgagcgctagtctctcaac	Protospacer
.*********** *****************

114. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448953 (Streptococcus phage Javan474, complete genome) position: , mismatch: 2, identity: 0.933

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
cgacacacggttgagcgctagtctctcaac	Protospacer
.*********** *****************

115. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 2, identity: 0.933

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
cgacacacggttgagcgctagtctctcaac	Protospacer
.*********** *****************

116. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448793 (Streptococcus phage Javan523, complete genome) position: , mismatch: 2, identity: 0.933

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
cgacacacggttgagcgctagtctctcaac	Protospacer
.*********** *****************

117. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448765 (Streptococcus phage Javan459, complete genome) position: , mismatch: 2, identity: 0.933

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
cgacacacggttgagcgctagtctctcaac	Protospacer
.*********** *****************

118. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448895 (Streptococcus phage Javan274, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaggatagagctagacagacaaaa	Protospacer
********.********************.

119. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448952 (Streptococcus phage Javan472, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaggatagagctagacagacaaaa	Protospacer
********.********************.

120. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagactaaa	Protospacer
************************** **.

121. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to NC_009819 (Streptococcus phage P9, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaggatagagctagacagacaaaa	Protospacer
********.********************.

122. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagagctagacagactaaa	Protospacer
************************** **.

123. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448777 (Streptococcus phage Javan491, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaggatagagctagacagacaaaa	Protospacer
********.********************.

124. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448858 (Streptococcus phage Javan166, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaagatagggctagacagactaag	Protospacer
**************.*********** ***

125. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448862 (Streptococcus phage Javan178, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaggatagagctagacagactaag	Protospacer
********.***************** ***

126. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448779 (Streptococcus phage Javan497, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaag	Protospacer
*****.** *********************

127. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448976 (Streptococcus phage Javan528, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaag	Protospacer
*****.** *********************

128. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448961 (Streptococcus phage Javan494, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaag	Protospacer
*****.** *********************

129. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448972 (Streptococcus phage Javan520, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaggatagagctagacagactaag	Protospacer
********.***************** ***

130. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448968 (Streptococcus phage Javan512, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaag	Protospacer
*****.** *********************

131. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448766 (Streptococcus phage Javan465, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaag	Protospacer
*****.** *********************

132. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448797 (Streptococcus phage Javan531, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaag	Protospacer
*****.** *********************

133. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to NC_004589 (Streptococcus prophage 315.6, complete genome) position: , mismatch: 2, identity: 0.933

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaag	Protospacer
*****.** *********************

134. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 3, identity: 0.9

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
cgacacacgattaagcgctagtctctcaac	Protospacer
.********.** *****************

135. spacer 4.3|772898|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 3, identity: 0.9

tgacacacggtttagcgctagtctctcaac	CRISPR spacer
cgacacacgattaagcgctagtctctcaac	Protospacer
.********.** *****************

136. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaaa	Protospacer
*****.** ********************.

137. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448824 (Streptococcus phage Javan637, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaggatagagatagacagacaaaa	Protospacer
********.******* ************.

138. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaaa	Protospacer
*****.** ********************.

139. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaaa	Protospacer
*****.** ********************.

140. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaaa	Protospacer
*****.** ********************.

141. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaaa	Protospacer
*****.** ********************.

142. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaaa	Protospacer
*****.** ********************.

143. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgaggatagagctagacagacaaaa	Protospacer
*****.**.********************.

144. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaaa	Protospacer
*****.** ********************.

145. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK449002 (Streptococcus phage Javan642, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaggatagagatagacagacaaaa	Protospacer
********.******* ************.

146. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK449003 (Streptococcus phage Javan648, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagcgaggatagagatagacagacaaaa	Protospacer
********.******* ************.

147. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 3, identity: 0.9

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaaa	Protospacer
*****.** ********************.

148. spacer 4.2|772832|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448727 (Streptococcus phage Javan291, complete genome) position: , mismatch: 4, identity: 0.867

cgtaaattgagagagtatccacgctggcgg	CRISPR spacer
aggaaactgagagagtatccacgctggagg	Protospacer
 * ***.******************** **

149. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MK448706 (Streptococcus phage Javan221, complete genome) position: , mismatch: 6, identity: 0.8

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
cttctctctgcagtactcgcaatgtccgca	Protospacer
 **  *.*****.*********** *****

150. spacer 4.4|772964|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to MN856077 (Bacteriophage sp. isolate 40, complete genome) position: , mismatch: 6, identity: 0.8

aaaagatgaagacggagataagccaactgt-	CRISPR spacer
aaaagatgaagtcggacataag-cagttgag	Protospacer
*********** **** ***** **..**

151. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to MK448886 (Streptococcus phage Javan254, complete genome) position: , mismatch: 6, identity: 0.8

--gctagcgaagatagagctagacagacaaag	CRISPR spacer
atgctgctg--gatagagctggacagacaaag	Protospacer
  ***. .*  *********.***********

152. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to AJ609634 (Bacteriophage EJ-1 proviral DNA, complete genome) position: , mismatch: 7, identity: 0.767

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
ctgacttctgcaataatcgcaatgaccaca	Protospacer
 * * ..******** ***********.**

153. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NC_005294 (Streptococcus prophage EJ-1, complete genome) position: , mismatch: 7, identity: 0.767

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
ctgacttctgcaataatcgcaatgaccaca	Protospacer
 * * ..******** ***********.**

154. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 8, identity: 0.733

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
cgtccgcctggaatgctcgcaatgaccgcg	Protospacer
  *   **** ***.**************.

155. spacer 4.1|772766|30|LS483394|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049320 (Caballeronia sp. SBC2 plasmid pSBC2-4, complete sequence) position: , mismatch: 8, identity: 0.733

attagccctgcaatactcgcaatgaccgca	CRISPR spacer
cgtccgcctggaatgctcgcaatgaccgcg	Protospacer
  *   **** ***.**************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36589 : 48951

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG38212.1\|36589_40363_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.6e-40	27.0
SQG38218.1\|40523_41978_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.0e-52	32.1
SQG38221.1\|42005_43028_+	phosphoribosylaminoimidazole synthetase	A0A0E3FGG1	Synechococcus_phage	1.2e-62	41.4
SQG38223.1\|43195_43750_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.4e-25	36.1
SQG38225.1\|43933_45481_+	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	E3SNU8	Prochlorococcus_phage	3.4e-45	52.4
SQG38229.1\|45539_46664_-	bacterial SH3 domain protein	A0A1S5PRY3	Streptococcus_phage	7.7e-07	33.1
SQG38231.1\|46826_48182_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
SQG38233.1\|48339_48951_+	phosphoribosyl carboxyaminoimidazole mutase	A0A2P0VNU7	Tetraselmis_virus	2.4e-18	42.3

DBSCAN-SWA_2

338542 : 344575

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG38986.1\|338542_339178_+	thymidylate kinase	M1PSC7	Streptococcus_phage	2.0e-65	63.4
SQG38989.1\|339195_340071_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.1e-68	46.6
SQG38991.1\|340089_340329_+	Tpl protein	NA	NA	NA	NA
SQG38993.1\|340733_341057_+	DNA replication initiation control protein	M1PFV3	Streptococcus_phage	1.3e-28	59.4
SQG38994.1\|341061_341925_+	corrin/porphyrin methyltransferase	M1PLC5	Streptococcus_phage	6.5e-115	74.3
SQG38996.1\|341951_342344_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQG38997.1\|342390_343020_-	copper homeostasis protein	NA	NA	NA	NA
SQG38998.1\|343317_343674_+	arsenate reductase	M1PLC0	Streptococcus_phage	2.8e-40	66.7
SQG38999.1\|343747_344575_-	3'-exo-deoxyribonuclease	M1PSC0	Streptococcus_phage	2.9e-128	79.5

DBSCAN-SWA_3

352920 : 397407

Mycobacterium_phage(16.67%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG39003.1\|352920_354918_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SHR2	Klosneuvirus	1.0e-86	35.0
SQG39004.1\|355416_356430_+	ribonucleotide-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	4.2e-97	53.4
SQG39005.1\|356433_356922_+	nrdI protein	R4JF54	Bacillus_phage	1.7e-11	37.5
SQG39006.1\|356888_359069_+	ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.1e-170	43.2
SQG39007.1\|359274_360027_-	ADP-ribosyltransferase	NA	NA	NA	NA
SQG39008.1\|360483_361110_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQG39009.1\|361360_361834_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQG39010.1\|362389_362830_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQG39011.1\|363588_364419_-\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	3.0e-69	48.5
SQG39012.1\|364419_364614_+	Uncharacterised protein	NA	NA	NA	NA
SQG39013.1\|364934_365468_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQG39014.1\|365594_365927_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQG39015.1\|366166_366418_+	hypothetical membrane spanning protein	NA	NA	NA	NA
SQG39016.1\|366511_367156_-	phage protein	NA	NA	NA	NA
SQG39017.1\|367516_367753_+	Protein of uncharacterised function (DUF2829)	NA	NA	NA	NA
SQG39018.1\|367745_368444_+	3-ketoacyl-ACP reductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.6e-10	25.2
SQG39019.1\|368519_369479_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
SQG39020.1\|369811_371149_+	phosphoglycerate transporter protein	NA	NA	NA	NA
SQG39021.1\|371321_372704_+	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	A0A2K9L4K9	Tupanvirus	8.5e-32	36.0
SQG39022.1\|372734_373289_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA
SQG39023.1\|373288_373540_+	membrane protein	NA	NA	NA	NA
SQG39024.1\|373558_374254_+	MTA/SAH nucleosidase	NA	NA	NA	NA
SQG39025.1\|374404_374746_+	Uncharacterised protein	NA	NA	NA	NA
SQG39026.1\|374846_375494_-	metalloregulator ScaR	NA	NA	NA	NA
SQG39027.1\|375639_376572_+	manganese-binding protein	NA	NA	NA	NA
SQG39028.1\|376635_377361_+	manganese transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.1e-17	32.6
SQG39029.1\|377361_378216_+	ABC 3 transport family protein	NA	NA	NA	NA
SQG39030.1\|378363_379170_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.5e-20	36.6
SQG39031.1\|379386_381792_+	cell division protein FtsK	S5VNE3	Mycobacterium_phage	3.8e-88	51.7
SQG39032.1\|381862_382216_-	integral membrane protein	NA	NA	NA	NA
SQG39033.1\|382438_382735_+\|transposase	transposase	NA	NA	NA	NA
SQG39034.1\|382718_383507_+\|transposase	transposase	NA	NA	NA	NA
SQG39035.1\|383720_384146_+	50S ribosomal protein L11	NA	NA	NA	NA
SQG39036.1\|384251_384941_+	50S ribosomal protein L1	NA	NA	NA	NA
SQG39037.1\|385261_385990_+	uridylate kinase	NA	NA	NA	NA
SQG39038.1\|386018_386576_+	ribosome recycling factor	NA	NA	NA	NA
SQG39039.1\|386683_387541_+	s1 RNA binding domain	NA	NA	NA	NA
SQG39040.1\|387613_388123_+	methionine sulfoxide reductase A	NA	NA	NA	NA
SQG39041.1\|388119_388335_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQG39042.1\|388490_389639_+	lysM domain protein	A0A0E3XB61	Gordonia_phage	5.4e-16	40.5
SQG39043.1\|389951_391724_+	myosin-cross-reactive antigen	NA	NA	NA	NA
SQG39044.1\|391882_392935_+	phosphate starvation-induced protein	W8D063	Erwinia_phage	1.2e-46	50.0
SQG39045.1\|392980_393556_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA
SQG39046.1\|393714_394212_+\|protease	metalloprotease	NA	NA	NA	NA
SQG39047.1\|394192_394600_+	diacylglycerol kinase	NA	NA	NA	NA
SQG39049.1\|394719_395616_+	GTP-binding protein Era	NA	NA	NA	NA
SQG39050.1\|395635_396112_+	phosphohydrolase	NA	NA	NA	NA
SQG39053.1\|396417_396672_-	Uncharacterised protein	NA	NA	NA	NA
SQG39055.1\|396838_396988_-\|transposase	IS1191 transposase	NA	NA	NA	NA
SQG39057.1\|396984_397407_-\|transposase	transposase, Mutator family protein	NA	NA	NA	NA

DBSCAN-SWA_4

616457 : 627059

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG39479.1\|616457_618668_-	phosphoglycerol transferase	W6LM83	Streptococcus_phage	6.5e-268	68.9
SQG39480.1\|618775_619939_+	SAM-dependent methyltransferase	W6LLI2	Streptococcus_phage	3.4e-143	65.1
SQG39483.1\|619935_620622_+	3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	7.0e-88	68.9
SQG39486.1\|620715_621882_+	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-34	32.8
SQG39488.1\|621942_622284_+	hypothetical cytosolic protein	A0A1X9I5Y8	Streptococcus_phage	2.6e-19	41.1
SQG39490.1\|622504_623857_+	glutathione reductase	A0A2K5B2C5	Erysipelothrix_phage	4.5e-30	24.7
SQG39493.1\|623943_625212_-	folylpolyglutamate synthase	NA	NA	NA	NA
SQG39495.1\|625241_625682_-	membrane protein	NA	NA	NA	NA
SQG39497.1\|625916_627059_+	aminotransferase class-V family protein	A0A1X6WFP1	Pacmanvirus	1.8e-24	27.3

DBSCAN-SWA_5

653988 : 690302

Bacillus_phage(30.77%)

head,tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG39560.1\|653988_654720_+\|tRNA	tRNA (guanine-N(1)-)-methyltransferase	NA	NA	NA	NA
SQG39562.1\|654719_655712_+	thioredoxin reductase	Q9JRK7	Streptococcus_phage	8.2e-29	54.9
SQG39565.1\|655889_656948_+	regulatory protein	NA	NA	NA	NA
SQG39567.1\|656960_657884_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
SQG39569.1\|658184_658853_+	deoR-like helix-turn-helix domain-containing protein	A0A077SK06	Escherichia_phage	2.2e-17	32.7
SQG39571.1\|658849_659761_+	1-phosphofructokinase	NA	NA	NA	NA
SQG39573.1\|659757_661704_+	PTS system fructose-specific transporter subunit IIABC	NA	NA	NA	NA
SQG39575.1\|661802_662396_+	N-acetylmuramidase	A0A249Y0X5	Enterococcus_phage	3.5e-11	33.8
SQG39578.1\|662546_663254_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q332B8	Clostridium_botulinum_C_phage	1.9e-11	36.4
SQG39580.1\|663261_663498_-\|transposase	degenerate transposase	A0A1B1P773	Bacillus_phage	1.1e-05	51.7
SQG39582.1\|664179_665205_-\|protease	igG-degrading protease	NA	NA	NA	NA
SQG39584.1\|665704_665881_+	nucleoside diphosphate kinase	NA	NA	NA	NA
SQG39586.1\|666108_666489_+\|transposase	transposase	NA	NA	NA	NA
SQG39588.1\|666488_667337_+	degV family protein	NA	NA	NA	NA
SQG39590.1\|667461_668670_+\|head	poly A polymerase head domain-containing protein	H7BUW3	unidentified_phage	9.0e-38	45.3
SQG39593.1\|668666_670544_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.9e-64	31.7
SQG39595.1\|671435_671846_+	polypeptide deformylase family protein	E3SLL2	Synechococcus_phage	6.9e-06	30.6
SQG39596.1\|671927_673940_-	5'-nucleotidase	NA	NA	NA	NA
SQG39598.1\|674159_674810_+	GTP pyrophosphokinase	NA	NA	NA	NA
SQG39600.1\|674812_675481_+	two-component response regulator	W8CYM9	Bacillus_phage	2.3e-19	28.8
SQG39603.1\|675489_676722_+	two component system histidine kinase	NA	NA	NA	NA
SQG39605.1\|677015_677894_+	mevalonate kinase	NA	NA	NA	NA
SQG39607.1\|677875_678820_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
SQG39609.1\|678812_679826_+	phosphomevalonate kinase	NA	NA	NA	NA
SQG39611.1\|679812_680802_+	isopentenyl pyrophosphate isomerase	NA	NA	NA	NA
SQG39613.1\|681031_682309_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
SQG39615.1\|682295_683471_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
SQG39617.1\|683679_684519_+	thymidylate synthase	U5J9N5	Bacillus_phage	1.7e-83	53.2
SQG39619.1\|684598_685096_+	dihydrofolate reductase	W5QU76	Bacillus_phage	8.6e-11	34.4
SQG39621.1\|685115_685286_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQG39623.1\|685415_686645_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.8e-138	60.5
SQG39625.1\|686654_687254_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
SQG39627.1\|687401_688145_+	virulence factor relevant regulator	NA	NA	NA	NA
SQG39629.1\|688202_690302_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	4.3e-120	39.2

DBSCAN-SWA_6

985920 : 1041107

Streptococcus_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG40256.1\|985920_986172_+\|transposase	transposase	NA	NA	NA	NA
SQG40265.1\|986113_986701_+\|transposase	truncated transposase	Q9MBM9	Staphylococcus_prophage	1.0e-26	39.1
SQG40267.1\|987214_988198_-	alpha/beta fold family hydrolase	NA	NA	NA	NA
SQG40268.1\|988228_989479_-	D-alanine transfer from undecaprenol-phosphate to the poly(Glycerophosphate) chain	NA	NA	NA	NA
SQG40270.1\|989471_989711_-	D-alanine-poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA
SQG40273.1\|989728_990985_-	Protein dltB	NA	NA	NA	NA
SQG40275.1\|990981_992520_-	D-alanine--poly(phosphoribitol) ligase subunit 1	A0A2K9KZV5	Tupanvirus	8.5e-41	28.2
SQG40278.1\|992531_992675_-	D-alanyl-lipoteichoic acid biosynthesis protein DltX	NA	NA	NA	NA
SQG40280.1\|992938_994930_-	excinuclease ABC subunit B	NA	NA	NA	NA
SQG40282.1\|995122_997297_+	glutamine-binding protein/glutamine transpor tsystem permease protein	NA	NA	NA	NA
SQG40284.1\|997296_998037_+	glutamine transport ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	1.5e-35	42.1
SQG40286.1\|998184_998337_-	Uncharacterised protein	NA	NA	NA	NA
SQG40288.1\|998333_999713_-	PTS system cellobiose-specific transporter subunit IIC	NA	NA	NA	NA
SQG40290.1\|999890_1000340_-	Domain of uncharacterised function (DUF3284)	NA	NA	NA	NA
SQG40292.1\|1000336_1000672_-	PTS system cellobiose-specific transporter subunit IIA	NA	NA	NA	NA
SQG40294.1\|1000674_1000986_-	PTS system cellobiose-specific component IIB	NA	NA	NA	NA
SQG40296.1\|1001008_1003003_-	PTS system mannitol (cryptic)-specific transporter subunit IIA	NA	NA	NA	NA
SQG40298.1\|1003108_1004203_-	outer surface protein	NA	NA	NA	NA
SQG40300.1\|1004211_1005612_-	beta-glucosidase	NA	NA	NA	NA
SQG40302.1\|1005836_1006532_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA
SQG40304.1\|1006536_1006695_-	hypothetical cytosolic protein	NA	NA	NA	NA
SQG40306.1\|1006763_1008077_-	GTPase ObgE	NA	NA	NA	NA
SQG40308.1\|1008133_1008262_-	membrane protein	NA	NA	NA	NA
SQG40310.1\|1008550_1009018_+\|transposase	transposase	NA	NA	NA	NA
SQG40312.1\|1009038_1009845_+\|transposase	transposase, IS861	A0A1B1P773	Bacillus_phage	4.9e-64	49.6
SQG40314.1\|1009893_1010625_-	16S pseudouridylate synthase	NA	NA	NA	NA
SQG40315.1\|1010739_1011105_+	thioesterase superfamily protein	NA	NA	NA	NA
SQG40317.1\|1011224_1012445_-	sugar (and other) transporter family protein	NA	NA	NA	NA
SQG40319.1\|1012818_1014303_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQG40321.1\|1014409_1014811_-	phenylacetic acid degradation protein PaaI	NA	NA	NA	NA
SQG40323.1\|1014895_1015135_-	phosphorylase Pnp/Udp family protein	F5CA76	Streptococcus_phi-m46.1-like_phage	4.4e-37	96.2
SQG40326.1\|1015596_1015689_-	phosphorylase Pnp/Udp family protein	NA	NA	NA	NA
SQG40328.1\|1015727_1017083_-\|tRNA	tRNA (uracil-5-)-methyltransferase	D0R096	Streptococcus_phage	5.6e-254	98.7
SQG40330.1\|1017164_1018616_-	cell envelope-related function transcriptional attenuator common domain-containing protein	NA	NA	NA	NA
SQG40331.1\|1018823_1019315_-	shikimate kinase	NA	NA	NA	NA
SQG40333.1\|1019307_1020591_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
SQG40335.1\|1020701_1021667_-	ribonuclease BN-like family protein	NA	NA	NA	NA
SQG40337.1\|1021668_1022529_-	methionine aminopeptidase Map	NA	NA	NA	NA
SQG40338.1\|1022544_1023828_-	cytosolic protein containing multiple CBS domains	NA	NA	NA	NA
SQG40340.1\|1023836_1024379_-	acetyltransferase family protein	NA	NA	NA	NA
SQG40343.1\|1024928_1025342_-	Mag protein precursor	NA	NA	NA	NA
SQG40345.1\|1025604_1026033_-	Beta-N-acetylhexosaminidase	NA	NA	NA	NA
SQG40347.1\|1026160_1026280_-	Uncharacterised protein	NA	NA	NA	NA
SQG40349.1\|1026694_1028485_-	glycosyl hydrolase, family 3	NA	NA	NA	NA
SQG40352.1\|1028615_1029419_-	phosphoglycolate phosphatase	NA	NA	NA	NA
SQG40355.1\|1029687_1030527_-	D-mannonate oxidoreductase	NA	NA	NA	NA
SQG40357.1\|1030541_1031636_-	mannonate dehydratase	NA	NA	NA	NA
SQG40360.1\|1031730_1033128_-	uronate isomerase	NA	NA	NA	NA
SQG40366.1\|1033157_1033775_-	4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase	NA	NA	NA	NA
SQG40368.1\|1033902_1034574_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQG40370.1\|1034615_1036406_-	Beta-glucuronidase	B9U1V4	Vaccinia_virus	1.6e-136	44.8
SQG40372.1\|1036428_1037457_-	2-dehydro-3-deoxygluconokinase	NA	NA	NA	NA
SQG40374.1\|1037609_1038974_-	sugar/sodium symporter	NA	NA	NA	NA
SQG40376.1\|1038919_1039153_-	sugar/sodium symporter	NA	NA	NA	NA
SQG40377.1\|1039642_1040302_+\|transposase	truncated transposase	A0A1X9I5T2	Streptococcus_phage	1.4e-114	90.8
SQG40379.1\|1040279_1041107_+\|transposase	transposase	A0A1X9I5T2	Streptococcus_phage	2.5e-132	92.9

DBSCAN-SWA_7

1063992 : 1089018

Bacillus_phage(16.67%)

tRNA,transposase,integrase,protease

attL 1061246:1061260|attR 1074851:1074865

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1061246:1061260	attL	NA	NA	NA	NA
SQG40417.1\|1063992_1064286_+\|transposase	transposase	NA	NA	NA	NA
SQG40419.1\|1064318_1064888_+\|integrase	integrase core domain protein	A0A1P8CWQ3	Bacillus_phage	2.0e-27	39.0
SQG40420.1\|1064927_1065149_+\|transposase	transposase	U5P429	Shigella_phage	2.3e-08	41.4
SQG40422.1\|1065241_1065937_-\|protease	CAAX amino terminal protease family protein	NA	NA	NA	NA
SQG40424.1\|1065955_1066717_-	hypothetical membrane spanning protein	NA	NA	NA	NA
SQG40426.1\|1066713_1066929_-	XRE family transcriptional regulator	NA	NA	NA	NA
SQG40428.1\|1067289_1069908_-\|tRNA	Alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	1.5e-61	33.9
SQG40430.1\|1070294_1071350_-	foldase protein prsA 1	NA	NA	NA	NA
SQG40432.1\|1071412_1072084_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	5.4e-08	27.2
SQG40434.1\|1072185_1073382_-	major facilitator superfamily protein	NA	NA	NA	NA
SQG40436.1\|1073757_1075563_-	oligoendopeptidase F	NA	NA	NA	NA
1074851:1074865	attR	NA	NA	NA	NA
SQG40438.1\|1075575_1076538_-	competence CoiA-like family protein	NA	NA	NA	NA
SQG40440.1\|1076832_1077549_-	16S pseudouridylate synthetase	NA	NA	NA	NA
SQG40442.1\|1077667_1078372_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
SQG40444.1\|1078573_1079602_+\|tRNA	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
SQG40446.1\|1079641_1080829_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQG40448.1\|1080942_1081365_-	S11 family peptidase	NA	NA	NA	NA
SQG40450.1\|1081382_1081520_-	S11 family peptidase	NA	NA	NA	NA
SQG40452.1\|1081516_1081765_-	lipoprotein	NA	NA	NA	NA
SQG40454.1\|1081793_1081976_-	Uncharacterised protein	NA	NA	NA	NA
SQG40455.1\|1082142_1082748_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.8e-58	53.7
SQG40457.1\|1082844_1083885_-	DNA polymerase III subunit delta	NA	NA	NA	NA
SQG40460.1\|1083955_1086199_-	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	5.2e-55	59.2
SQG40462.1\|1086179_1086842_-	comE operon 1 domain-containing protein	NA	NA	NA	NA
SQG40463.1\|1087041_1087782_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
SQG40465.1\|1087949_1088246_+\|transposase	transposase	NA	NA	NA	NA
SQG40467.1\|1088229_1089018_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1104140 : 1151600

Streptococcus_phage(53.7%)

capsid,head,terminase,tail,integrase

attL 1107580:1107599|attR 1148985:1149004

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG40495.1\|1104140_1105076_+	dihydroorotate dehydrogenase 1A	A0A1V0SH91	Hokovirus	4.6e-66	45.1
SQG40497.1\|1105375_1107238_-	putative heavy metal-transporting ATPase	E4ZFI9	Streptococcus_phage	4.6e-89	34.3
1107580:1107599	attL	NA	NA	NA	NA
SQG40499.1\|1107768_1107951_-	paratox	A3F673	Streptococcus_phage	2.0e-21	81.7
SQG40501.1\|1108190_1108949_+	DNA/RNA non-specific endonuclease family protein	NA	NA	NA	NA
SQG40503.1\|1109059_1109767_+	exotoxin type C	A0A097PAT7	Streptococcus_pyogenes_phage	3.9e-09	27.1
SQG40505.1\|1109835_1110588_-	phage-associated cell wall hydrolase	A3F665	Streptococcus_phage	2.1e-141	97.2
SQG40507.1\|1110589_1110922_-	N-acetylmuramoyl-L-alanine amidase	A3F664	Streptococcus_phage	5.7e-51	100.0
SQG40509.1\|1110923_1111253_-	Uncharacterised protein	A3F663	Streptococcus_phage	6.2e-50	99.0
SQG40510.1\|1111263_1111875_-	phage protein	Q938J7	Temperate_phage	3.7e-80	88.2
SQG40512.1\|1111877_1112306_-	phage protein	A3F661	Streptococcus_phage	2.8e-66	92.2
SQG40516.1\|1112314_1114138_-	phage protein	Q938J9	Temperate_phage	4.2e-212	79.8
SQG40518.1\|1114148_1114463_-	phage protein	NA	NA	NA	NA
SQG40520.1\|1114464_1115688_-	phage protein	A3F657	Streptococcus_phage	6.7e-49	41.3
SQG40522.1\|1115684_1117832_-	Phage endopeptidase	Q938K1	Temperate_phage	0.0e+00	94.9
SQG40523.1\|1117828_1118545_-	phage protein	Q938K2	Temperate_phage	3.6e-135	98.7
SQG40525.1\|1118541_1121802_-	phage protein	Q938K3	Temperate_phage	0.0e+00	98.5
SQG40527.1\|1121791_1122373_-	bacteriophage Gp15 family protein	Q938K4	Temperate_phage	4.9e-106	99.5
SQG40528.1\|1122376_1122811_-	phage protein	Q938K5	Temperate_phage	2.9e-71	99.3
SQG40530.1\|1122849_1123335_-\|tail	major tail shaft protein	Q938K6	Temperate_phage	1.6e-86	100.0
SQG40531.1\|1123334_1123733_-\|capsid	minor capsid protein	Q79S87	Temperate_phage	3.5e-71	100.0
SQG40533.1\|1123729_1124086_-	phage protein	Q79S88	Temperate_phage	4.5e-62	100.0
SQG40535.1\|1124085_1124445_-\|capsid	minor capsid protein - phage associated	Q79S86	Temperate_phage	1.0e-58	100.0
SQG40536.1\|1124407_1124824_-	phage protein	Q938K7	Temperate_phage	3.6e-55	98.2
SQG40539.1\|1124877_1125696_-\|head	putative major head protein	Q79S85	Temperate_phage	4.0e-146	100.0
SQG40541.1\|1125699_1126308_-	phage protein	Q938K8	Temperate_phage	4.0e-95	95.0
SQG40543.1\|1126439_1126706_-	putative phage associated protein	Q938K9	Temperate_phage	1.1e-36	95.5
SQG40545.1\|1126767_1127007_-	phage protein	Q938L0	Temperate_phage	2.8e-36	100.0
SQG40547.1\|1126978_1128457_-\|capsid	capsid protein	Q938L1	Temperate_phage	9.0e-274	99.6
SQG40548.1\|1128461_1129964_-\|capsid	Minor capsid protein	Q938L2	Temperate_phage	5.9e-281	99.6
SQG40551.1\|1129977_1131252_-\|terminase	phage terminase	A0A1S5SA45	Streptococcus_phage	1.5e-216	84.1
SQG40552.1\|1131253_1131949_-	phage protein	A0A2H4J4R0	uncultured_Caudovirales_phage	4.4e-29	34.5
SQG40554.1\|1132068_1132485_-	phage protein	A7J289	Streptococcus_phage	3.3e-72	99.3
SQG40556.1\|1132468_1132615_-	Uncharacterised protein	NA	NA	NA	NA
SQG40557.1\|1132617_1132890_-	phage membrane protein	A7J287	Streptococcus_phage	5.7e-25	73.3
SQG40560.1\|1132882_1133053_-	phage protein	A7J285	Streptococcus_phage	9.0e-21	92.3
SQG40562.1\|1133053_1134376_-	SNF2 family phage protein	A7J284	Streptococcus_phage	3.0e-252	97.7
SQG40564.1\|1134372_1134648_-	phage protein	A7J283	Streptococcus_phage	3.5e-46	98.9
SQG40565.1\|1135033_1137418_-	phage DNA primase/helicase protein	A7J282	Streptococcus_phage	8.2e-277	94.6
SQG40567.1\|1137422_1139345_-	phage DNA polymerase	A7J280	Streptococcus_phage	0.0e+00	98.4
SQG40569.1\|1139387_1139945_-	phage protein	D2J040	Enterococcus_phage	8.6e-52	59.0
SQG40571.1\|1139959_1141117_-	phage protein	A7J278	Streptococcus_phage	3.0e-216	97.9
SQG40573.1\|1141116_1141416_-	phage protein	A7J277	Streptococcus_phage	1.8e-43	100.0
SQG40574.1\|1141504_1141708_-	phage protein	A7J276	Streptococcus_phage	1.6e-32	98.5
SQG40576.1\|1142051_1142201_-	phage protein	A7J275	Streptococcus_phage	3.8e-15	90.0
SQG40578.1\|1142197_1142584_-	phage protein	A7J274	Streptococcus_phage	1.4e-56	87.4
SQG40580.1\|1142611_1142797_-	phage protein	NA	NA	NA	NA
SQG40582.1\|1142789_1142960_-	phage protein	A7J273	Streptococcus_phage	2.9e-19	87.5
SQG40584.1\|1142961_1143273_-	excisionase	A0A1S5SA25	Streptococcus_phage	1.4e-43	78.6
SQG40586.1\|1143379_1143595_+	Uncharacterised protein	A0A1S5SA41	Streptococcus_phage	1.9e-15	61.4
SQG40587.1\|1143568_1143817_-	Uncharacterised protein	A0A141E1M0	Streptococcus_phage	1.6e-26	69.5
SQG40589.1\|1143896_1144106_+	Uncharacterised protein	NA	NA	NA	NA
SQG40591.1\|1144247_1144508_+	Uncharacterised protein	M1PS67	Streptococcus_phage	5.8e-27	70.9
SQG40593.1\|1144436_1144595_-	Uncharacterised protein	NA	NA	NA	NA
SQG40595.1\|1144606_1145260_-	prophage LambdaSa1, antirepressor	A0A2H4IZX7	uncultured_Caudovirales_phage	4.4e-71	59.7
SQG40597.1\|1145271_1145463_-	phage protein	A7J270	Streptococcus_phage	4.0e-25	92.1
SQG40598.1\|1145769_1145919_+	Uncharacterised protein	NA	NA	NA	NA
SQG40600.1\|1146691_1146964_+	Cro/CI family phage transcriptional regulator	Q7Y4M0	Streptococcus_phage	4.8e-32	72.8
SQG40602.1\|1146967_1147348_+	peptidase	A0A1S5SFH2	Streptococcus_phage	8.0e-41	61.1
SQG40603.1\|1147359_1147626_+	phage protein	NA	NA	NA	NA
SQG40605.1\|1147754_1148897_+\|integrase	phage integrase family protein	M1NRJ9	Streptococcus_phage	2.4e-173	77.4
SQG40607.1\|1148986_1149262_-	DNA-binding protein HU 1	A7KV42	Bacillus_phage	2.6e-25	73.0
1148985:1149004	attR	NA	NA	NA	NA
SQG40608.1\|1149360_1149948_-	membrane protein	NA	NA	NA	NA
SQG40610.1\|1149925_1150786_-	GDSL family lipase	NA	NA	NA	NA
SQG40612.1\|1150760_1151600_-	degV family protein	A0A0N9SI50	Staphylococcus_phage	7.0e-13	35.7

DBSCAN-SWA_9

1737523 : 1744925

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG41796.1\|1737523_1737811_-	Uncharacterised protein	A0A1X9I5U4	Streptococcus_phage	5.3e-29	64.5
SQG41797.1\|1738474_1740079_-	bacteriophage resistance protein	A0A1P8BMF9	Lactococcus_phage	2.8e-143	52.1
SQG41798.1\|1740068_1740590_-	phage protein	NA	NA	NA	NA
SQG41799.1\|1740602_1740869_-	phage protein	A0A1X9I6M4	Streptococcus_phage	7.1e-12	46.0
SQG41800.1\|1740878_1741070_-	phage protein	NA	NA	NA	NA
SQG41801.1\|1741072_1741294_-	Uncharacterised protein	NA	NA	NA	NA
SQG41802.1\|1741290_1741623_-	phage protein	NA	NA	NA	NA
SQG41803.1\|1741964_1742420_-	phage antirepressor protein	A0A0A7S0G2	Clostridium_phage	2.9e-21	48.4
SQG41804.1\|1742435_1742621_-	putative transcriptional regulator	NA	NA	NA	NA
SQG41805.1\|1742823_1743384_+	Cro/CI family transcriptional regulator	A0A1X9I723	Streptococcus_phage	9.0e-17	71.0
SQG41806.1\|1743761_1744925_+	tyrosine recombinase XerD	A0A1X9I6A9	Streptococcus_phage	5.3e-160	70.3

Anti-CRISPR protein detection

Acr_ID: LS483394.1|SQG40499.1|1107768_1107951_-|paratox

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LS483394.1|SQG40499.1|1107768_1107951_-|paratox

1107768_1107951_-

60 aa aa

1104140-1151600

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LS483394_4	TypeII	4.5\|773030\|30\|LS483394\|CRISPRCasFinder,CRT	773030-773059	30	1132680-1132651	2

1. spacer 4.5|773030|30|LS483394|CRISPRCasFinder,CRT matches to LS483394 position: 1132680-1132651, mismatch: 2

gctagcgaagatagagctagacagacaaag	CRISPR spacer
gctagtgatgatagagctagacagacaaag	Protospacer
*****.** *********************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483394

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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