CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483418	Streptococcus suis strain NCTC10234 genome assembly, chromosome: 1	4 crisprs	PrimPol,DinG,csa3,cas3,DEDDh	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483418_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483418_1

16638-16768

Unclear

Consensus_repeat	Method
GAGTTGTCTCTTGAGGGACTAGTTAACAGAGGAACGAAAAAA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of LS483418_1

>merge|LS483418|1|16638-16768|CRISPRCasFinder
GAGTTGTCTCTTGAGGGACTAGTTAACAGAGGAACGAAAAAAGTTTCGAAAAAGTGTTGACAAGACCATCAGAAGATGATAGACTAATGGAGTTGTCTCTTGAGGGACTGGTTAACAGAGGAACGAAAAAA

>LS483418|1|1|16638-16768|CRISPRCasFinder
GAGTTGTCTCTTGAGGGACTAGTTAACAGAGGAACGAAAAAA	GTTTCGAAAAAGTGTTGACAAGACCATCAGAAGATGATAGACTAATG
GAGTTGTCTCTTGAGGGACTGGTTAACAGAGGAACGAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483418.1\|SQG99729.1\|28573_29356_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|273175
LS483418.1\|SQG99731.1\|30352_30601_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|183533
LS483418.1\|SQG99721.1\|13091_13634_+\|hypoxanthine-guanine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
LS483418.1\|SQG99727.1\|26353_27322_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|167353
LS483418.1\|SQG99717.1\|10043_10412_+\|septum-formation-initiator	unknown	unknown	gnl\|CDD\|225471
LS483418.1\|SQG99730.1\|29352_30360_+\|glycerol-3-phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
LS483418.1\|SQG99719.1\|10534_11815_+\|beta-lactamase-class-A	unknown	unknown	gnl\|CDD\|379138
LS483418.1\|SQG99718.1\|10408_10522_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483418.1\|SQG99722.1\|13655_15629_+\|ATP-dependent-Zn-protease	unknown	unknown	gnl\|CDD\|273520
LS483418.1\|SQG99732.1\|30718_31426_+\|phosphoribosylaminoimidazole-succinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
LS483418.1\|SQG99725.1\|24394_24910_+\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|282013
LS483418.1\|SQG99716.1\|9784_10057_+\|ribosome-associated-heat-shock-protein-implicated-in-the-recycling-of-the-50S-subunit	unknown	unknown	gnl\|CDD\|224109
LS483418.1\|SQG99728.1\|27408_28587_+\|aromatic-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|235985
LS483418.1\|SQG99733.1\|31438_35158_+\|phosphoribosylformylglycinamidine-synthase-domain-containing-protein	unknown	unknown	gnl\|CDD\|130916
LS483418.1\|SQG99724.1\|23568_24405_+\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
LS483418.1\|SQG99723.1\|15966_16437_+\|Signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|274357
LS483418.1\|SQG99714.1\|5671_6241_+\|peptidyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
LS483418.1\|SQG99726.1\|24994_26251_+\|ChaP	unknown	unknown	gnl\|CDD\|226400
LS483418.1\|SQG99715.1\|6240_9735_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
LS483418.1\|SQG99720.1\|11815_13084_+\|ATPase	unknown	unknown	gnl\|CDD\|238950

Protein	Function_ID	Function_description	E-value
LS483418.1\|SQG99729.1\|28573_29356_+\|DNA-repair-protein-RecO	gnl\|CDD\|273175	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	3.30367e-78
LS483418.1\|SQG99731.1\|30352_30601_+\|acyl-carrier-protein	gnl\|CDD\|183533	PRK12449, PRK12449, acyl carrier protein; Provisional.	1.19684e-17
LS483418.1\|SQG99721.1\|13091_13634_+\|hypoxanthine-guanine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	2.51562e-92
LS483418.1\|SQG99727.1\|26353_27322_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|167353	PRK02269, PRK02269, ribose-phosphate diphosphokinase.	0
LS483418.1\|SQG99717.1\|10043_10412_+\|septum-formation-initiator	gnl\|CDD\|225471	COG2919, COG2919, Septum formation initiator [Cell division and chromosome partitioning].	3.84819e-14
LS483418.1\|SQG99730.1\|29352_30360_+\|glycerol-3-phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	8.90536e-173
LS483418.1\|SQG99719.1\|10534_11815_+\|beta-lactamase-class-A	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.88913e-42
LS483418.1\|SQG99732.1\|30718_31426_+\|phosphoribosylaminoimidazole-succinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	4.61705e-143
LS483418.1\|SQG99722.1\|13655_15629_+\|ATP-dependent-Zn-protease	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
LS483418.1\|SQG99725.1\|24394_24910_+\|rod-shape-determining-protein-MreD	gnl\|CDD\|282013	pfam04093, MreD, rod shape-determining protein MreD. MreD (murein formation D) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped.	0.00116629
LS483418.1\|SQG99716.1\|9784_10057_+\|ribosome-associated-heat-shock-protein-implicated-in-the-recycling-of-the-50S-subunit	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	4.26063e-31
LS483418.1\|SQG99728.1\|27408_28587_+\|aromatic-amino-acid-aminotransferase	gnl\|CDD\|235985	PRK07309, PRK07309, pyridoxal phosphate-dependent aminotransferase.	0
LS483418.1\|SQG99733.1\|31438_35158_+\|phosphoribosylformylglycinamidine-synthase-domain-containing-protein	gnl\|CDD\|130916	TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis].	0
LS483418.1\|SQG99724.1\|23568_24405_+\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	1.15531e-53
LS483418.1\|SQG99723.1\|15966_16437_+\|Signal-transduction-histidine-kinase	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	0.00468367
LS483418.1\|SQG99714.1\|5671_6241_+\|peptidyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	6.27614e-97
LS483418.1\|SQG99726.1\|24994_26251_+\|ChaP	gnl\|CDD\|226400	COG3883, COG3883, Uncharacterized protein conserved in bacteria [Function unknown].	3.21323e-51
LS483418.1\|SQG99715.1\|6240_9735_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
LS483418.1\|SQG99720.1\|11815_13084_+\|ATPase	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	6.49313e-74

>LS483418.1|SQG99723.1|15966_16437_+|Signal-transduction-histidine-kinase
MEFEKVYASVKGIVNKARKEFYIKLWDRDDWEQEGMMTLFELLEAQPWLVDEQVQLYCYFKVKFRNRIKDRIRKQESQKRKFDRMPHEDIYELSHAIQSPGLINDELLMLRGALRDYRKNLSNDQLDKYEKLISGQCFNGRREMIRDLQIHLKDFR
>LS483418.1|SQG99722.1|13655_15629_+|ATP-dependent-Zn-protease
MNNQPNKGFIKNPFLIILVIATIVTAFQFFNAGQQVATQEISYSQVVTELKNNNVSEITYQPNSSVIEITGKYKTEQEAKDELASSIKLFQVSSKVKYKNFKSLILPSETNLSELQALANENGVKVAIKPESSNGLWLNIIFNLLPLVIAGVFFMMMMNQGGGGARGAMNFGRNKAKALEQSNIKVRFSDVAGAEEEKQELVEVVEFLKDPKRFTKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGVGMGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAADVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKTVIDASDIDEAEDRVIAGPSKKDRQVSAKEREIVAYHEAGHTIVGLVLSNAREVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIFNTQTTGASNDFEQATQMARAMVAEYGMSDKMGPMQYEGSHAMFGGQTTQKHISEQTAYELDNEVRDLLNEARNKAAEIIQSNRETHKLIAEALLKYETLDSVQIKSLYETGKMPENIERDDEDVHPLSYEEVKEKINTKE
>LS483418.1|SQG99721.1|13091_13634_+|hypoxanthine-guanine-phosphoribosyltransferase
MLDKDIKKILVSEEEIVAKCKELGQILATDYADKNPILVGILKGSIPFMAELMKHIDAHVETDYMVVSSYHGGTESCGTVKIIKDLDNSVAGRHIIFVEDIIDTGRTLKELKELFALRQAASIKIATLLDKPEGRVVEIEPDYTCFTIPNEFVVGFGLDYDENYRNLPYVGVLKEEVYTK
>LS483418.1|SQG99720.1|11815_13084_+|ATPase
MKDRFLKVTLDGHFFDKHKKVLVAVSGGLDSMNLFHLLYECKQVLGIELGIAHINHGQREESVIEEKYLRQLAEESNVPFYLSYFEGVFSEEAARKWRYGFFATIMEKEGYTALVTAHHADDQAETVFMRLIRGGRLRHLSAIQPTQPFATGELIRPLLSFKKADFEKLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIELTLNNLAVDTNNLFQALRDLTQDLSVTDVMSFQQQTPAVQSYLLEEYLEKFPDLQLSRPQFNEVLHILRSKANYYHLLKNDYMLEKDYHRFQIYKIGPETDSQPEKIMIESEGIFSYGSYIFSLNHPLEEADSILYFPTENPIVVRRRQAGDTILINGVNKKLRRWFIDNKISQKVRQNALIIEQNGEIYGITNLVSSDLSKSVKNDIIKATLYIKMKE
>LS483418.1|SQG99719.1|10534_11815_+|beta-lactamase-class-A
MQKKLLVWLLPVLFGWQVVDSTEIPFELTAQEEYELTHTIYDQYFQTIPQNPNVFQTENLYSDEELTIAGGQLQPNQHFSITDVLVNSKKELVFQIDDKGYILASRHLLFDDVIVTETTVEQTYWTKKGFTLLTSPIANEATEIKNDLQPYQAVMVSKIVTTSLGDFAYVTDKGWIAVNNLSKTDNRVEAVQELLTNKYSKDTIGIYVKQLSTGQTAGVNQEKLFYSASIAKLPILYYVQEQLNAGYIDLTTKVKYTAESISFPGAYVAGGSGSLSKTPDNKDYSVEELINKTAKESDNVASNLLSYYVANKFDSNFYQVITAKTGSEWSMVTRETSAEIAGKMMEALYIQNGYVLESLLSTQFDNQRISKDISVPVAHKIGDADDVKHDVAIVYAGSPFVLSIFTDKSNYDEITQIANDIYRILK
>LS483418.1|SQG99718.1|10408_10522_+|Uncharacterised-protein
MTESIFKIVEQFLQHSDEKLEELNQKNRELKLEENES
>LS483418.1|SQG99717.1|10043_10412_+|septum-formation-initiator
MKKSKILQLNNAFIQSERKKTQHQLAERQQKNRFMGAILILVIFLFMLPAYNLVGTYTNIQQQEKKLAELEKNYEELTKEQKQEAEMVAKLKNEEYAAKYVRAKYQYSKEGEFVYNIPGLPK
>LS483418.1|SQG99716.1|9784_10057_+|ribosome-associated-heat-shock-protein-implicated-in-the-recycling-of-the-50S-subunit
MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVEIQFGNKLLTVKVLEMKDSTKKEDALKMYEIISEKRIEKDEEI
>LS483418.1|SQG99715.1|6240_9735_+|transcription-repair-coupling-factor
MNILDLLHKNKQINQWQSGLNQSTRQLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAIIGSENVYNFFTDDSPIAEFVFASKERTQSRIDSLNFLTDSTSSGILVASIVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRGDILDIFDMQSETPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYSRASQYIQTAIEQSTLEEQQSYLREVLADMQTEYRHPDLRKFLSCIYEQSWTLLDYLPKSSPLFLDDFHKIADKQAQFEKEIADLLTDDLQKGKTVSSLKYFASTYAELRKYKPATFFSSFQKGLGNVKFDALYQFTQHPMQEFFHQIPLLKDELTRYAKSNNTVVIQASSDVSLQTLQKNLQEYDIHLPVHAADKLVEGQQQVTIGQLASGFHLMDEKLVFITEKEIFNKKMKRKTRRTNISNAERIKDYSELAVGDYVVHHVHGIGQYLGIETIEISGIHRDYLTVQYQNSDRISIPVEQIDLLSKYLASDGKAPKVNKLNDGRFQRTKQKVQKQVEDIADDLIKLYAERSQLKGFAFSPDDENQVEFDNYFTHVETDDQLRSIDEIKKDMEKDSPMDRLLVGDVGFGKTEVAMRAAFKAVNDGKQVAILVPTTVLAQQHYANFQERFAEFPVNVDVMSRFKTKAEQEKTLEKLKKGQVDILIGTHRLLSKDVVFADLGLLVIDEEQRFGVKHKERLKELKKKIDVLTLTATPIPRTLQMSMLGIRDLSVIETPPTNRYPVQTYVMETNPSVIRDAMLREIDRGGQVYYLYNKVDTIEQKVSELKELVPEATIGYVHGQMSEIQLENTLYAFVEGEYDILVTTTIIETGVDIPNANTLFIENADHMGLSTLYQLRGRVGRSSRIAYAYLMYRPDKSLTEVAEKRLEAIKGFTELGSGFKIAMQDLSIRGAGNILGAAQSGFIDSVGYEMYSQLLEQAILEKQGKATQRQKSNSEVNLQIDAYLPSDYIGDQRQKIEIYKRIKNIDSRVNYQELQEELIDRFGEYPDVVAYLLEIGLLKSFLDQVFCHTVLRRQHQVTVTFEPMAGQIFLTQDYFEALSVTNLKAQITENKGKLAVVFNIQQKKEYEILEELISFAEKLKEIKARKAE
>LS483418.1|SQG99714.1|5671_6241_+|peptidyl-tRNA-hydrolase
MTRLIIGLGNPGDRYFETKHNVGFMLLDKIAKRENVTFNHDKIFQADIATTFIDGEKIYLVKPTTFMNESGKAVHALMTYYGLDATDILVAYDDLDMAVGKIRFRQKGSAGGHNGIKSIVKHIGTQEFDRIKIGIGRPKGKMSVVNHVLSGFDIEDRIEIDLALDKLDKAVNVYLEEDDFDTVMRKFNG
>LS483418.1|SQG99724.1|23568_24405_+|rod-shape-determining-protein-MreC
MNKFSKLVVVVSIFLLLSFSLLFVTFSKGLQVPYLNNIVRVVVTPIQSVISVPTRFFSEQKDVLTDLMNAYEENKQLKETIMSLEGMAAENTSLKEENASLRSSLGVVSDFPEKQLIPGSVLVRTPSSWSEHISINIGETSGVTYNALVVANGGLVGIVSSLSSDSAVVTLFTNSDEFTKLPVKISVDSKEIYGILSGYDADTNSFIINQLNSADEIAVGSNVVTSDLAGATPANVQIGKVLSVKSNSNSLNREVYVEPTASFSNIYSVLVVGQTNAQ
>LS483418.1|SQG99725.1|24394_24910_+|rod-shape-determining-protein-MreD
MRNKMIEIFMFPILFFILLLDGQISTLVTNWSVGLFTISSHLVLMLAIFYANYVSLGFSLFIFTLLGLVYDISYLNLIGIATTTLPLVLYCIYFFFQGAVSKRGINILILLVAIFQFEFISYSFARIFHITNLSVFIFVFNKLLPSLLFNLVLFFVLQPLFERLFGITNKT
>LS483418.1|SQG99726.1|24994_26251_+|ChaP
MKKKILATIMLSTVVLSNANYVAVISANDVDSQIATKNQQISELTAQQAEAQQQVDAIQGQVDAIVSEQAKLTEENTRLEAESQTLAADIERLSADIVSRDGALKEQARSAQVDGSASSYINTILDSKSIIDAVSRVNAMREIISANNRMLEQQKADKEAIVEKQKANQEAITTLAANRQKLEDDAQVLQVRQAELEAAKLNLAVQKATAEDEKNSLLVQKAAAEEAARQAAARQAEYQAQQAALAQQQVASVSAPVVSTLVETTVTETVAAPTQTVSQSTPTVSTPTTSTSSGSGSSAAANNARYDASSYPVGECTWGVKSQLSWVGPYWGDAKQWLASARAEGFSTGSTPQVGAIAVWTGGYYGHVAVVTAVQSSTSIQVVESNYMGRRYIGNHRGGYFNPTTTSEGAVYYIYPPY
>LS483418.1|SQG99727.1|26353_27322_+|ribose-phosphate-pyrophosphokinase
MAFTDLKLFALSSNQKLAEQVSKKIGIPLGKSSVRQFSDGEIQVNIEESIRGTHVYILQSTSSPVNDNLMEILIMVDALKRASAESVNVVMPYYGYARQDRKARAREPITSKLVANMLQTAGVNRLLTIDLHAAQIQGFFDIPVDHLMGAPLIADYFERRGMVGDGYVVVSPDHGGVTRVRKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGDIKDKTCILIDDMIDTAGTICHAADALADAGATAVYASCTHPVLSGPAMDNISKSAIKKLVVLDTIEIAEDRLIDKIEHISTAELLAEAIIRIHEKRPLSPLFEASRVK
>LS483418.1|SQG99728.1|27408_28587_+|aromatic-amino-acid-aminotransferase
MDLLNRFNKNLNRIEVSMIRQFDQSISDVPGILKLTLGEPDFTTPDHVKEAAKAAIDADQSYYTGMAGLLELRQAAAEFVAEKYNLHYNPENEILSTIGATEALSASLVAILEAGDTVLLPAPAYPGYEPIVNMVGADIVEIDTTANDFVLTPEMLEEAIIEQGDKLKAVILNYPANPTGVTYSREQIQAFADVLRNYPVFVLSDEVYAELTYTGQPHTSIAEFLPEQTILIQGLSKSHAMTGWRIGLIMSQAPIIAQIIKSHQYLVTAASTAMQYGAVEALKNGKDDALPMRAEYVKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQDSFSFLQDFARKKAVAFIPGAAFGQYGEGYVRISYAASMEKIQTAMARLKEYLEENGTN
>LS483418.1|SQG99729.1|28573_29356_+|DNA-repair-protein-RecO
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKNINGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGLPFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFIDDLSSWGQIMKPRTENEETE
>LS483418.1|SQG99730.1|29352_30360_+|glycerol-3-phosphate-acyltransferase-PlsX
MKRIAVDAMGGDHAPQAVVEGVNQALAAFPDIEIQLYGDEAKIKQYLTATERVSIVHTTEKINSDDEPVKAIRRKKEASMVLATKAVKDGQADAVLSAGNTGALLAAGVFVVGRIKNIDRPGLMSTLPTMDGKGFDMMDLGANAENIAHHLYQYGILGSFYAEHVRGVKQPRVGLLNNGTEDTKGTPVHQEAYKLLAEDKSINFIGNVEARELLNSVADVVVTDGFTGNAVLKTIEGTAKSIVGQLTGSIKNGGLRAKLGGLLVKPTLKKALGAMDYKTAGGAVLLGLKAPVIKAHGSSDAQSIFYTIKQTRSILEAGIVEKSVAKFSVVEESHD
>LS483418.1|SQG99731.1|30352_30601_+|acyl-carrier-protein
MTREQVYQRVVELIQDEKGEDFQVQPESTLADNIAADSVEIMEFVLNLEDEFHVDVPDAAIEHFEVLSDIVDFIYKEVKKRS
>LS483418.1|SQG99732.1|30718_31426_+|phosphoribosylaminoimidazole-succinocarboxamide-synthase
MKTDLLYSGKAKDIYATADSDQIVAVYKDQATAFNGGKKEQIVGKGRLNNLISSLIFEKLNEAGVPTHFIKRLSDSEQLNKKVEIIPLEVVLRNVTAGSFSKRFGVEEGITLSTPIVEFYYKKDELDDPFINDEHIAFLELASQDQIAYIKEETRRINEFLKDLFAQIGLTLVDFKLEFGIDSSGQILLADEFSPDNCRLWDADGNHLDKDVFRRGLGELTEVYEVVLAKLQEVK
>LS483418.1|SQG99733.1|31438_35158_+|phosphoribosylformylglycinamidine-synthase-domain-containing-protein
MAKRIFVEKKAAFQIKAEALRKELTHNLQLTSLSSLRLVQVYDVFNLEEDLLEQAIKHIFTEQVTDKVLSDEELGLEGAVYFAIEALPGQFDQRAASSQEALLLLGSRQEVRVNTGQLYILNGDVQEEELVAIKNYLLNPVDSRFKDMDAPLVAQEFSVSDTVIPSLDFFDSYGVEEFASYKREAGLAMEVEDLLFIQDYFKSIGRVPTETELKVLDTYWSDHCRHTTFETELRSIDFSASKFQKQLQATYDKYLAMRTELGRTDKPQTLMDMATIFGRYERANGRLDDMEVSDEINACSVEIEVDVDGVKEPWLLMFKNETHNHPTEIEPFGGAATCIGGAIRDPLSGRSYVYQAMRISGAGDITQPLTATRSGKLPQQIISKTAAHGYSSYGNQIGLATTYVREYFHPGFVAKRMELGAVVGAAPKENVVREKPVAGDVVILLGGKTGRDGIGGATGSSKVQTVESVETAGAEVQKGNAIEERKIQRLFRNGAVTRLIKKSNDFGAGGVCVAIGELADGLEIDLDKVPLKYAGLNGTEIAISESQERMSVVVRPEDVDAFIAACRQENIHAVVVAKVTEKPNLVMTWNGQTIVDLERSFLDTNGVRVVVDAKVVDSPVNLPETRTTSAQTLREDLKDLLSDLNHASQKGLQTIFDSSVGRSTVNHPLGGRHQLTPTESSVQKLPVQQGVTTTASVMAQGYHPYLADWSPYHGAAYAVIEATARLVATGANWSKARFSYQEYFQRMDKQAERFGQPVAALLGSIEAQIQLGLPSIGGKDSMSGTFEDLTVPPTLVAFGVTTADSCKVLSPEFKATGEHIYYLPGQILSEDIDFTLIKSNFKAFEKWQSDYVITAASAVKYGGVLESLALMSFGNQVGARVELADFETSLTGQLGGFVFTSQEDIPDAVKIGQTTTDFTLVVNGVNLSGQDLQVAFEGKLEEVYPTEFEQATELQDVPAVTSSAVIKAKETVEVPVVYIPVFPGTNSEYDSAKAFEQAGAKVNLVPFVTLDAESIENSVDTMVDNIAKANILFFAGGFSAADEPDGSAKFIVTILRNAKVRSAIDQFIEKRGLIIGICNGFQALVKSGLLPYGNFEEAGDTSPTLFYNDANQHIAKMVETRIANVNSPWLAGVQVGDIHAIPVSHGEGKFVVTDEEFATLRDNGQIFSQYVDFTGQPSMDSKYNPNGSSHAIEGITSRNGQIIGKMGHSERYEDGLFQNIPGKKDQGLFVSAVRYFTGK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483418_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483418_2

87434-87564

Orphan

Consensus_repeat	Method
GAGTTGTCTCTTGAGGGACTAGTTAACAGAGGAACGAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483418_2

>merge|LS483418|2|87434-87564|CRISPRCasFinder
GAGTTGTCTCTTGAGGGACTAGTTAACAGAGGAACGAAAAAAGTTTCGAAAAAGTGTTGACAAGACCATCAGAAGATGATAGACTAATGGAGTTGTCTCTTGAGGGACTGGTTAACAGAGGAACGAAAAAA

>LS483418|2|2|87434-87564|CRISPRCasFinder
GAGTTGTCTCTTGAGGGACTAGTTAACAGAGGAACGAAAAAA	GTTTCGAAAAAGTGTTGACAAGACCATCAGAAGATGATAGACTAATG
GAGTTGTCTCTTGAGGGACTGGTTAACAGAGGAACGAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483418.1\|SQG99811.1\|100401_101658_-\|tyrosyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235645
LS483418.1\|SQG99803.1\|93998_94781_+\|Protein-of-uncharacterised-function-(DUF2971)	unknown	unknown	gnl\|CDD\|378585
LS483418.1\|SQG99808.1\|99078_99549_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|131745
LS483418.1\|SQG99805.1\|95945_96650_+\|Mn/Zn-ABC-transporter-ATPase	unknown	unknown	gnl\|CDD\|224046
LS483418.1\|SQG99802.1\|86735_87122_+\|LSU-ribosomal-protein-L17p	unknown	unknown	gnl\|CDD\|235522
LS483418.1\|SQG99794.1\|81971_82412_+\|50S-ribosomal-protein-L15	unknown	unknown	gnl\|CDD\|235523
LS483418.1\|SQG99795.1\|82425_83736_+\|preprotein-translocase-subunit-SecY	unknown	unknown	gnl\|CDD\|236412
LS483418.1\|SQG99800.1\|85354_85738_+\|SSU-ribosomal-protein-S11p-(S14e)	unknown	unknown	gnl\|CDD\|180007
LS483418.1\|SQG99804.1\|95501_95945_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
LS483418.1\|SQG99797.1\|84592_84811_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
LS483418.1\|SQG99796.1\|83829_84471_+\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
LS483418.1\|SQG99798.1\|84835_84952_+\|LSU-ribosomal-protein-L36p	unknown	unknown	gnl\|CDD\|376334
LS483418.1\|SQG99801.1\|85782_86721_+\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
LS483418.1\|SQG99799.1\|84971_85337_+\|SSU-ribosomal-protein-S13p-(S18e)	unknown	unknown	gnl\|CDD\|235358
LS483418.1\|SQG99809.1\|99729_99939_+\|copper-chaperone	unknown	unknown	gnl\|CDD\|238219
LS483418.1\|SQG99793.1\|81653_81836_+\|50S-ribosomal-protein-L30	unknown	unknown	gnl\|CDD\|180163
LS483418.1\|SQG99810.1\|99966_100344_-\|diadenosine-tetraphosphate-(Ap4A)-hydrolase-and-other-HIT-family-hydrolases	unknown	unknown	gnl\|CDD\|223611
LS483418.1\|SQG99812.1\|101811_104235_+\|membrane-carboxypeptidase-(penicillin-binding-protein)	unknown	unknown	gnl\|CDD\|223815
LS483418.1\|SQG99806.1\|96642_97455_+\|Mn/Zn-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|334323
LS483418.1\|SQG99807.1\|97464_98976_+\|metal-ABC-transporter-periplasmic-protein	unknown	unknown	gnl\|CDD\|238499

Protein	Function_ID	Function_description	E-value
LS483418.1\|SQG99811.1\|100401_101658_-\|tyrosyl-tRNA-synthetase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
LS483418.1\|SQG99803.1\|93998_94781_+\|Protein-of-uncharacterised-function-(DUF2971)	gnl\|CDD\|378585	pfam11185, DUF2971, Protein of unknown function (DUF2971). This bacterial family of proteins has no known function.	4.47073e-06
LS483418.1\|SQG99808.1\|99078_99549_+\|transcriptional-regulator	gnl\|CDD\|131745	TIGR02698, Uncharacterized_16.5_kDa_protein_in_ptsI_3'region, copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI. [Transport and binding proteins, Cations and iron carrying compounds, Regulatory functions, DNA interactions].	8.80717e-41
LS483418.1\|SQG99805.1\|95945_96650_+\|Mn/Zn-ABC-transporter-ATPase	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	3.88616e-106
LS483418.1\|SQG99802.1\|86735_87122_+\|LSU-ribosomal-protein-L17p	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.6132e-66
LS483418.1\|SQG99794.1\|81971_82412_+\|50S-ribosomal-protein-L15	gnl\|CDD\|235523	PRK05592, rplO, 50S ribosomal protein L15; Reviewed.	3.86637e-85
LS483418.1\|SQG99795.1\|82425_83736_+\|preprotein-translocase-subunit-SecY	gnl\|CDD\|236412	PRK09204, secY, preprotein translocase subunit SecY; Reviewed.	3.43842e-180
LS483418.1\|SQG99800.1\|85354_85738_+\|SSU-ribosomal-protein-S11p-(S14e)	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	1.51827e-85
LS483418.1\|SQG99804.1\|95501_95945_+\|transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.12951e-14
LS483418.1\|SQG99797.1\|84592_84811_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	3.25516e-47
LS483418.1\|SQG99796.1\|83829_84471_+\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	4.90526e-116
LS483418.1\|SQG99798.1\|84835_84952_+\|LSU-ribosomal-protein-L36p	gnl\|CDD\|376334	pfam00444, Ribosomal_L36, Ribosomal protein L36.	5.19122e-15
LS483418.1\|SQG99801.1\|85782_86721_+\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.9769e-179
LS483418.1\|SQG99799.1\|84971_85337_+\|SSU-ribosomal-protein-S13p-(S18e)	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	3.4104e-76
LS483418.1\|SQG99809.1\|99729_99939_+\|copper-chaperone	gnl\|CDD\|238219	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.	1.5654e-09
LS483418.1\|SQG99793.1\|81653_81836_+\|50S-ribosomal-protein-L30	gnl\|CDD\|180163	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed.	6.71487e-29
LS483418.1\|SQG99810.1\|99966_100344_-\|diadenosine-tetraphosphate-(Ap4A)-hydrolase-and-other-HIT-family-hydrolases	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	7.56885e-23
LS483418.1\|SQG99812.1\|101811_104235_+\|membrane-carboxypeptidase-(penicillin-binding-protein)	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	3.28104e-155
LS483418.1\|SQG99806.1\|96642_97455_+\|Mn/Zn-ABC-transporter-permease	gnl\|CDD\|334323	pfam00950, ABC-3, ABC 3 transport family.	3.22087e-65
LS483418.1\|SQG99807.1\|97464_98976_+\|metal-ABC-transporter-periplasmic-protein	gnl\|CDD\|238499	cd01017, AdcA, Metal binding protein AdcA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AdcA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).	3.25216e-133

>LS483418.1|SQG99802.1|86735_87122_+|LSU-ribosomal-protein-L17p
MAYRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTVEKMITLGKRGDLHARRQAAAFVRNEIASENYDEATDKYTSATALQKLFSEIAPRYAERNGGYTRILKTEPRRGDAAPMAIIELV
>LS483418.1|SQG99801.1|85782_86721_+|DNA-directed-RNA-polymerase-subunit-alpha
MIEFEKPTITKIDENKDYGRFVIEPLERGYGTTLGNSLRRVLLASLPGAAVTSIKIDGVLHEFDTVPGVREDVMQIILNIKGIAVKSYVEDEKKIELDVVGPAEVTAGDILTDSDIEIVNPDHYLFTIADGATFKAVLTVNSGRGYVPAEDNKKDDAPVGTLAVDSIYTPVKKVNYQVEPARVGSNDGFDKLTLEINTNGTIIPEDALGLSARILMEHLGLFTDLTEVAKSAEVMKEAEVASDDRMLDRTIEELDLSVRSYNCLKRAGINTVFDLTEKTEPEMMKVRNLGRKSLEEVKVKLADLGLGLKKDK
>LS483418.1|SQG99800.1|85354_85738_+|SSU-ribosomal-protein-S11p-(S14e)
MAKPTRKRRVKKNIESGIAHIHATFNNTIVMITDVHGNAIAWSSAGALGFKGSRKSTPFAAQMASEAAAKSAQEHGLKTVEVTVKGPGSGRESAIRALAAAGLEVTAIRDVTPVPHNGARPPKRRRV
>LS483418.1|SQG99799.1|84971_85337_+|SSU-ribosomal-protein-S13p-(S18e)
MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVKDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK
>LS483418.1|SQG99798.1|84835_84952_+|LSU-ribosomal-protein-L36p
MKVRPSVKPICEYCKVIRRNGRVMVICPANPKHKQRQG
>LS483418.1|SQG99797.1|84592_84811_+|translation-initiation-factor-IF-1
MAKEDVIEIEGKVVDTMPNAMFTVELENGHQVLATVSGKIRKNYIRILVGDRVTVELSPYDLTRGRITYRFK
>LS483418.1|SQG99796.1|83829_84471_+|adenylate-kinase
MNLLIMGLPGAGKGTQAAKIVEKFNVAHISTGDMFRAAMANQTEMGILAKSYIDKGDLVPDEVTNGIVKERLVQDDIKEKGFLLDGYPRTIEQAHALDENLADLGIELQGVINIEIDPSKLVERLSGRIIHKETGETFHKVFNPPVGDYKEEDFYQREDDKPESVKRRLEVNIAQGQPIIDHYRAKGLVHDIEGDQDIDLVFQAIDTVLSKLQ
>LS483418.1|SQG99795.1|82425_83736_+|preprotein-translocase-subunit-SecY
MFFKLLKDALKVKLVRSKILFTIFILFVFRVGTHITVPGVNAKSLEALSNLPFLNMLSLVSGNAMRNFSVFALGVSPYITASIIVQLLQMDILPKFVEWGKQGEVGRRKLNQATRYISLVLAFVQSIGITAGFNALSGAKLTNMPLNWQTYLLIGAILTTGSIIVTWLGEQISEKGYGNGTSMIIFAGIISSLPGTFHEIYIDRFVNIESSRLGESAIFVAALVVLIFFVVYFTTFVQQAEYKLPIQYTKRAQGAPSSSYLPLKLNPAGVIPVIFAGSITAVPTSLIQYFASQNKSAGWLLTVQEYFDYSTAKGMIVYAGLIIAFTFFYTFVQVNPEKTAESLQKSAAYIHGVRPGNGTEQFLSKLLTRLAVIGALFLSFVALLPILAQNLFGLSSSIAFLGTSLIIVISTSIEGIKQLEGYLLKRKYVGFLEITE
>LS483418.1|SQG99794.1|81971_82412_+|50S-ribosomal-protein-L15
MKLHELQPATGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRPGFEGGQTPLFRRLPKRGFTNINAKEYAIVNLDQLNAFEDGAEVTPVVLIEAGIVKAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITSKGGSVEVI
>LS483418.1|SQG99793.1|81653_81836_+|50S-ribosomal-protein-L30
MAQIKITLTKSPIGRKPEQRKTVVALGLGKLNSSVVKEDNPAILGMVNAISHLVTVEEVK
>LS483418.1|SQG99803.1|93998_94781_+|Protein-of-uncharacterised-function-(DUF2971)
MKTLYHYTTVETLLLILNYKTLRFKSLLYVDDPLEPSTSDFGNLGGFKYVSCWTDTPNSIPQWTMYSDNMTGVCIGISFDKETDVFLTEKFSLSESSEPIDMVNALHPLKSGLLVTNNKYVPSLEQIRYTDDISLITPRVVSSDDKSTTINLASNGIYKTTDWSFQNEQRFSFQIFPLPIDLVLELMNANKGDLTEIINSFISVKPKEYFDLDLNPTIFSNMTITFGKRCSAEDKLKVSKFLEDNKFHIPLFDSTVNIKP
>LS483418.1|SQG99804.1|95501_95945_+|transcriptional-regulator
MNRIALEIEKYLHEIVLSSENQLEILVGSCQSTVKLTNTQEHILMLIEKAAYTNTEIAKELNVSQAAITKATKSLVAQGLLVAVRDDKDARIVRFSLTEAAKPIAAEHAHHHAHTLEAYEELLENYSLEEQESIARFLSELVEKIRK
>LS483418.1|SQG99805.1|95945_96650_+|Mn/Zn-ABC-transporter-ATPase
MRYITVEDLSFYYDKEPVLEHIHYYLDSGEFVTLTGENGAAKTTLIKATLGILKPKQGKVSIAEKSIKGKKLRMAYLPQQIASFNAGFPSTVYEFVKSGRYPRQGWFRRLTAHDEEHVRISLESVGMWEHRDKRLGALSGGQKQRAVIARMFASDPDIFILDEPTTGMDAGTKDAFYQLMHHSAKKHGKSVLMITHDPDELNKYADRNIHLVRDQQSPWRCFNVHEADEEVAHV
>LS483418.1|SQG99806.1|96642_97455_+|Mn/Zn-ABC-transporter-permease
MFDLSVFHYDFMQRAFLAIIAMSLFSPILGVFLILRRQSLMSDTLSHVSLAGVAFGLVLGISPTLSTVLVVIVAAVFLEYLRTIYKNFMEIGTAILMSTGLAISLIVMNKSGGKSGLSLEQYLFGSIVTISQEQVIALFTIAVIVIVLTLLFLRPMYILTFDEDTAFVDGLPVRAMSIAFNVVTGVAIALMIPAAGALLVSTIMVLPASIALRLGKSFKAVIFTGMGIGFFGMVMGLLTSYYAETPASASITLIFISIFLLVNVVQKFKK
>LS483418.1|SQG99807.1|97464_98976_+|metal-ABC-transporter-periplasmic-protein
MKKVGLLFLSVSALLLGACGNSTASEDGKLNIVTTFYPVYEFTKQVAGDEANVDLLVKAGTEVHGYEPSAKDIARIQEADAFVYENENMETWVHDVEKSLDTTKVNVISATEGMLLLPGGEEEHEGHDHSEEGHSHAYDPHVWLSPERAITLVENIRDSLVAKYPEKKDAFETNAAAYIEKLDALDAKYSETLSAAKQKYFVTQHTAFAYLALDYGLKQVSITGVAADEDPTPSRLAELTEYINKYGIKYIYFEENASKSVAETLAKETGVQLDVLNPLESLTDEDMKNGKDYISVMEDNLIALEKTTSQEGSEILPEEGAETAQTVYNGYFEDSAVKDRTLSDYAGEWQSVYPYLLDGTLDQVWDYKAKIKGGMTAEEYKTYYDTGYKTDVDQINITDNTMEFVVGDKKEKFTYKYVGYKILTYKKGNRGVRFLFEATDANAGNYKYVQFSDHNIAPVKTGHFHIYFGGESQEKLLEELENWPTYYPVGLTGLEIGQEMLAH
>LS483418.1|SQG99808.1|99078_99549_+|transcriptional-regulator
MEQTISAAEWQVMRVLWAHPGATSQEIIQALQEGFDWQATTIKTLLGRLRKKNYLRMAKETSKYHYYPLISEEEHLQGQVELLLAAICSTKQGQLVEKLLDTGTFSKKSLENLASKISQLQRTAPEQIACRCLAGQCTCGHHHTLRKSTSDVVDLT
>LS483418.1|SQG99809.1|99729_99939_+|copper-chaperone
MKQTLKLKNLSCQNCVKHVTNHLLDLDGVEEVKIQLEEQLAEVATSVAYDLERYQEVLEDTIYEVEELV
>LS483418.1|SQG99810.1|99966_100344_-|diadenosine-tetraphosphate-(Ap4A)-hydrolase-and-other-HIT-family-hydrolases
MTCIFCHQIEEIDILYQTEYFKVVWDIDPIQTGHLLIISKDHYDTLSQVPPTIRYELSDLEVFLTEKLCQTLAIDGVTTACNDRLFNAGTHFHVHLIPRFRSDGFWDQISLAQAQLDLTHFLKAL
>LS483418.1|SQG99811.1|100401_101658_-|tyrosyl-tRNA-synthetase
MNIFEELKARGLVFQTTDEEALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKDTVDGWVTKIQGQLSRFLDFENGDNKAEMVNNYDWFSDISFIDFLRDVGKYYTVNYMMSKDSVKKRIETGISYTEFAYQIMQGYDFYELNDKHNVTLQIGGSDQWGNMTAGTELLRRKADKSGHVMTVPLITDSTGKKFGKSEGNAVWLDADKTSPYEMYQFWLNVMDDDAVRFLKIFTFLSLDEIAEIEKQFDAARHERLAQKILAKEVVTLVHGEEAYNQALNITEQLFAGNIKNLSAKELKQGLSNVPNYAVQAEDNLNIVELLVTSGIVNSKRQAREDVQNGAIYVNGERVQDLDYTLSDSDKIDGELTVIRRGKKKYSVLTY
>LS483418.1|SQG99812.1|101811_104235_+|membrane-carboxypeptidase-(penicillin-binding-protein)
MATKSDKQDFKKKISALGLGDVVGVFLRTLKLLFNSVAVLVFLFGLFGAGIGIGFVVSLFDDVKIPKTEELVAKVSEVSRISTVTYSDGSLVSEVNSDLLRVPITSEEVSNYLKQAVIATEDETFETHNGVVPKAVLRAALGSVGLGSSSGGSTLTQQLIKQQLVGDAPTFTRKANEIVSALALERNMTKEEILTIYLNVSPFGRNNQGRNIAGVEAAAQGIFGKPAKDLTVPQAAFIAGLPQSPIVYSPYASDGTRKSDEDMVYGIERYQDVLFNMYRASFLTKEEYETYKAYDIKQDFIAPAPVMADTKDYLYYKVMEEAQEVMFDYLVKRDKVSKNDLKNDETKASYEELAKQELSQGGYTIKSTVDQKIYAAMQSVVANYGSVLDDGNEYVETGSVLIDNATGAILGFVGGRDYATNQNNHAFDTLRSPASTIKPLLAYGIAIDQGLIGSASILSDYPTNFSSGQPIMYGSGRGTGMMNLQTAIDRSVNIPAFWTYKMMRNAGVDAKAYMDKMNYHIPMYDIESVPLGGGVEISVLTNTNAYQTLANGGVYNKHYIVESITASDGTVVYQHEATPVQVYSKATASIMNQLLRQVVNSGYTTTFKSRLSGLNPQAASSDFVGKTGTSNEVNDVWLMLSTPRVTLGTWAGNDDNSEMYVWTGYHNNSQYVAHMVDALYNVNADMFAGKFELDSSVIASSVVASTGQRAGTTQVNGRQVTVGGAMTTSYWAKNGAPVTSYNFMVGGTDSDRAQAWNTIIGSQTATSSSSTQRSSSTRSSTSSSANNTNQSSETQTATSEQANNDSP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483418_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483418_3

1618826-1618970

Orphan

Consensus_repeat	Method
GTCCACTCTCGCCGTTGCGCCTTTCCAGTTTCTTGGGCGCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483418_3

>merge|LS483418|3|1618826-1618970|CRISPRCasFinder
GTCCACTCTCGCCGTTGCGCCTTTCCAGTTTCTTGGGCGCAAGCTAAAAAGACCCGTCGGGGTCTCAATTCGCTTTCTTATTTTCATGCTCATGAAAAAACAGTCCATTCTCGCCGTTGCGCCTTTCCAGTTTCTTGGGCGCAAG

>LS483418|3|3|1618826-1618970|CRISPRCasFinder
GTCCACTCTCGCCGTTGCGCCTTTCCAGTTTCTTGGGCGCAAG	CTAAAAAGACCCGTCGGGGTCTCAATTCGCTTTCTTATTTTCATGCTCATGAAAAAACA
GTCCATTCTCGCCGTTGCGCCTTTCCAGTTTCTTGGGCGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483418.1\|SQH01231.1\|1621786_1622776_-\|lipoate-protein-ligase	unknown	unknown	gnl\|CDD\|161920
LS483418.1\|SQH01224.1\|1613661_1616487_-\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
LS483418.1\|SQH01220.1\|1611051_1611471_-\|transcription-antitermination-protein-NusB	unknown	unknown	gnl\|CDD\|234686
LS483418.1\|SQH01232.1\|1622905_1624096_+\|membrane-protein	unknown	unknown	unknown
LS483418.1\|SQH01230.1\|1620304_1621468_+\|transposase	unknown	unknown	gnl\|CDD\|225382
LS483418.1\|SQH01225.1\|1616990_1617935_+\|Mg2+-and-Co2+-ABC-transporter	unknown	unknown	gnl\|CDD\|213361
LS483418.1\|SQH01228.1\|1619268_1619763_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180915
LS483418.1\|SQH01219.1\|1610006_1610972_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380514
LS483418.1\|SQH01229.1\|1619774_1620065_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
LS483418.1\|SQH01218.1\|1608454_1610026_+\|beta-fructosidases-(levanase/invertase)	unknown	unknown	gnl\|CDD\|273554
LS483418.1\|SQH01227.1\|1618996_1619236_-\|SSU-ribosomal-protein-S18p-@-SSU-ribosomal-protein-S18p,-zinc-independent	unknown	unknown	gnl\|CDD\|178997
LS483418.1\|SQH01233.1\|1624147_1625908_-\|pyruvate/2-oxoglutarate-dehydrogenase-complex,-dihydrolipoamide-dehydrogenase-(E3)-component,-and-related-enzymes	unknown	unknown	gnl\|CDD\|273568
LS483418.1\|SQH01226.1\|1617950_1618607_+\|membrane-protein	unknown	unknown	gnl\|CDD\|368981
LS483418.1\|SQH01236.1\|1629192_1630161_-\|pyruvate/2-oxoglutarate-dehydrogenase-complex,-dehydrogenase-(E1)-component,-alpha-subunit	unknown	unknown	gnl\|CDD\|238958
LS483418.1\|SQH01223.1\|1612501_1613563_-\|putative-metallopeptidase	unknown	unknown	gnl\|CDD\|223085
LS483418.1\|SQH01222.1\|1611880_1612438_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
LS483418.1\|SQH01217.1\|1606488_1608366_-\|PTS-system-IIABC-component	unknown	unknown	gnl\|CDD\|131051
LS483418.1\|SQH01235.1\|1627910_1628906_-\|pyruvate/2-oxoglutarate-dehydrogenase-complex,-dehydrogenase-(E1)-component,-beta-subunit	unknown	unknown	gnl\|CDD\|223101
LS483418.1\|SQH01221.1\|1611460_1611853_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|377129
LS483418.1\|SQH01234.1\|1626181_1627570_-\|branched-chain-alpha-keto-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001

Protein	Function_ID	Function_description	E-value
LS483418.1\|SQH01231.1\|1621786_1622776_-\|lipoate-protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	1.69881e-103
LS483418.1\|SQH01224.1\|1613661_1616487_-\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
LS483418.1\|SQH01220.1\|1611051_1611471_-\|transcription-antitermination-protein-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	6.30967e-49
LS483418.1\|SQH01230.1\|1620304_1621468_+\|transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.6445e-28
LS483418.1\|SQH01225.1\|1616990_1617935_+\|Mg2+-and-Co2+-ABC-transporter	gnl\|CDD\|213361	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family. A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.46201e-115
LS483418.1\|SQH01228.1\|1619268_1619763_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|180915	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional.	1.03536e-102
LS483418.1\|SQH01219.1\|1610006_1610972_+\|transcriptional-regulator	gnl\|CDD\|380514	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.56273e-104
LS483418.1\|SQH01229.1\|1619774_1620065_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	1.41522e-37
LS483418.1\|SQH01218.1\|1608454_1610026_+\|beta-fructosidases-(levanase/invertase)	gnl\|CDD\|273554	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
LS483418.1\|SQH01227.1\|1618996_1619236_-\|SSU-ribosomal-protein-S18p-@-SSU-ribosomal-protein-S18p,-zinc-independent	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	6.68341e-38
LS483418.1\|SQH01233.1\|1624147_1625908_-\|pyruvate/2-oxoglutarate-dehydrogenase-complex,-dihydrolipoamide-dehydrogenase-(E3)-component,-and-related-enzymes	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
LS483418.1\|SQH01226.1\|1617950_1618607_+\|membrane-protein	gnl\|CDD\|368981	pfam06570, DUF1129, Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function.	2.99466e-85
LS483418.1\|SQH01236.1\|1629192_1630161_-\|pyruvate/2-oxoglutarate-dehydrogenase-complex,-dehydrogenase-(E1)-component,-alpha-subunit	gnl\|CDD\|238958	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).	7.20442e-147
LS483418.1\|SQH01223.1\|1612501_1613563_-\|putative-metallopeptidase	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	5.90797e-112
LS483418.1\|SQH01222.1\|1611880_1612438_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	1.37279e-91
LS483418.1\|SQH01217.1\|1606488_1608366_-\|PTS-system-IIABC-component	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
LS483418.1\|SQH01235.1\|1627910_1628906_-\|pyruvate/2-oxoglutarate-dehydrogenase-complex,-dehydrogenase-(E1)-component,-beta-subunit	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	1.50604e-179
LS483418.1\|SQH01221.1\|1611460_1611853_-\|general-stress-protein	gnl\|CDD\|377129	pfam03780, Asp23, Asp23 family, cell envelope-related function. The alkaline shock protein Asp23 was identified as an alkaline shock protein that was expressed in a sigmaB-dependent manner in Staphylococcus aureus. Following an alkaline shock Asp23 accumulates in the soluble protein fraction of the S. aureus cell. Asp23 is one of the most abundant proteins in the cytosolic protein fraction of stationary S. aureus cells, with a copy-number of >25000 per cell. A second Asp23-family protein, AmaP, which is encoded within the asp23-operon, is required to localize Asp23 to the cell membrane. The overall function for the family is thus a cell envelope-related one in Gram-positive bacteria.	1.25433e-34
LS483418.1\|SQH01234.1\|1626181_1627570_-\|branched-chain-alpha-keto-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	5.84394e-162

>LS483418.1|SQH01226.1|1617950_1618607_+|membrane-protein
MSFTEINGLTKKNQEFIHIATNQLIKDGKSDSEIKELLEEILPTIIEKQKTGVTARNLYGAPSEWAASKTISEQEKKDQVEYNENPWLMWLDSSLFMLAIIAGINGLMNLFGQGAQYGLLTLFVIGFGVGAGMYLMYHFVYREQIKTGQRPKLLKAIAFLGLATLAWSVVFILAALIPAAFNPVLPPLVTILIGAAAFGARYLLKKKYNIRNAMSPVQ
>LS483418.1|SQH01225.1|1616990_1617935_+|Mg2+-and-Co2+-ABC-transporter
MKQIFLSTMTDLEEIQTFEPGAWINLVNPSQSESMEVAEHYKIDIADLRAPLDAEESSRITVEDDYTLILVDVPILEERNNKTYYITIPLGIILTDDAIITTCLEPLPLFEQFIHRRLRNFFTFMKSRFVFQILYRNAQLYLSALRTIDRKSEEIEKQLHEATRNEELIVLMELEKTIVYFKASLKTNERLVKKLASSSRLLRKYEEDEDLLEDTLVETQQAIEMADIYGSILNSMTHAFASIISNNQNTIMKTLALVTIVLSIPTMVFSAYGMNFKDNIIPFNDIPYAFWWIILFAFAISLSLTFYFIRKRWF
>LS483418.1|SQH01224.1|1613661_1616487_-|excinuclease-ABC-subunit-A
MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGLSPAISIDQKTTSRNPRSTVGTATEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKKGQHKTIFEKIQKDGYVRVRVNGGVYDVSEVPELSKSKAHNIEVVVDRIVIKDGIRSRLFDSIEAALRIADGYVIIDTMDEKEMLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCSDCDGLGMKLEVDTDLIVPDASKTLREGALAPWNPISSNYYPQMLEQAMNHFGVDMDKPFEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYTRTVMKTYMNELTCGTCHGYRLNDQALSVKVGGEQGLHIGQLSDLSVADHLQVIEHLTLSENEATIATPIVKEIKDRLSFLNNVGLNYLTLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLIDIGPGAGVFGGEIVASGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFLEVTGAKENNLQDVTVRFPLGKFVAVTGVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKSISGIEHLDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNEAKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVEFFKHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDIAQLLKVLARFVDDGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGTVVATGTPEEVAENPASFTGQYLKMKLK
>LS483418.1|SQH01223.1|1612501_1613563_-|putative-metallopeptidase
MQKRLEKFEAKLAQSTVDGILVTGQNNIYYLTGFWGTEATVFISGKRRLFVTDSRYTLIAKASVKGFDIIESRFALEEIAKVIKEDGLEKIGFDSEVTYGFYQSLTSIFEGYQLVAMSNFIEDLRMIKDEKEIATIRRACQISDQAFIDVLDFIKPGQTTEMDVNHFLDHRMRQLGAEGASFEFIVASGYRSAMPHGRASEKVIQSGETLTLDFGCYYQHYVSDMTRTIHIGHVTDQEREIYDVVLRANKALIEQAKEGVTYREFDAIPREIISAAGYGANFTHGIGHGIGLDIHEYPYFGKSDETIKAGMVLTDEPGIYLDDKYGVRIEDDLLITENGCEVLTLAPKELIVI
>LS483418.1|SQH01222.1|1611880_1612438_-|elongation-factor-P
MIEASKLRAGMTFEAEGKLIKVLDASHHKPGKGNTIMRMKLRDVRTGSTFDTTYRPDEKFEQAIIETVPAQYLYQMDDTAYFMNTETYDQYEIPVATIKEELLYILENSEVKIQFYGTEVIGVTVPTTVELVVAETQPSIKGATVTGSGKPATMETGLVVNVPDFIEAGQKLVINTAEGTYVSRA
>LS483418.1|SQH01221.1|1611460_1611853_-|general-stress-protein
MTTEYQGEIVIAPRVLEVITGIAAAKVDGVHSLQNKRVADSWSKTSLNKGVYLETDEEGRVTADIYVYLEYGVNVPAVSMDIQRAVKTAVYNYAEVQVAAVNIHVSGIVPDKTPKPALKDLFGEDFLDEE
>LS483418.1|SQH01220.1|1611051_1611471_-|transcription-antitermination-protein-NusB
MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFSDESSAKFVNGVLSQFIKEEA
>LS483418.1|SQH01219.1|1610006_1610972_+|transcriptional-regulator
MVAKLTDVAQLAGVSPTTVSRVINKKGYLSEKTIRNVEEAMRELGYKPNNLARSLQGKSAKLVGLIFPTINNIFYSELISHLEKELFDRGYKTIICNSQHESDKEREYLEMLAANQVDGIISGSHNLGIQDYDRVVAPIIAFDRNLSPSIPIVSSDNFAGGVLAAQTLQKAGCHNPLMITGNDDSNSPTGLRQVGFTSILNKAEVFHISSDFSPVRKEMEIRAILEKQKPDGIFVSGDATAMLVWNIIRSMKLSIPEDIKLIGYDGTSFIENYYPQLTTIKQPLTEIARLLVELLVDKIEGKKLTKTDYILPISLLAGASI
>LS483418.1|SQH01218.1|1608454_1610026_+|beta-fructosidases-(levanase/invertase)
MSNVYHILFQFYQKTLLKLDFSQENVYYINEKLENLEKIMAFTTGERYRAYADWTPEYIEKIKKNTESSPWRTNFHIETPHGLLNDPNGFSYFNGKWTLFYQYFPFGAAHGLKSWVHTESTDLVHFEETGTVMYPDTPLDSHGAYSGSAMEFGDKLFLFYTGNVRDENWVRHPYQIGALMDKDGKIEKIDKVLIEQPEDTTDHFRDPQIFNYKGQYYAIVGGQNLDKKGIVKLYKAENNDYLNWSYVGDLDFANDMTAYMMECPNIAFVGEQPILLYCPQGLDKEVLDYGNIYPNMYKIGQSFVPETASIVEPSELINLDYGFECYATQAFNAPDGRTLSVSWLALPDVEYPTDAYDYQGCLSLVKELTIKDGKLYQYPVDAITSLRKEAQPFSAQKETNNVYELELDFSASTKHEIVLFANEAEKGLVLSVDTEQGQITLDRGNCGQPFALDFGTSRSCEISPGALTANIFIDKSVFEIFINKGEKVFSGRVFPDADQSGIVITTGNPTGTYYHLDYGRKTN
>LS483418.1|SQH01217.1|1606488_1608366_-|PTS-system-IIABC-component
MNNTEIAKKVIDALGGRENVRSVAHCATRLRVMVVDEGKIDKDTVEDIEKVQGAFFNSGQYQIIFGTGTVNKIYDEVVALGLPTATTGEQKAEAAKQGNAFQRAIRTFGDVFVPIIPAIVATGLFMGLRGLLGALGYTLPEDLNVYSQILTDTAFIVLPALVVWSTFRVFGGNQTIGIVLGMMLIAGQLPNAWVVASGGDVKPTIFFGFIPVVGLQGSVLPAFIIGLVGAKFEKAVRKVVPEVLDLLVTPFVTLFVMSILGLFVIGPVFHVVENYILAGTQAILNLPMGLGGLLIGGVHQVIVVSGVHHIFNFLEAQLVANTGANPFNAIITAAMTAQGAATVAVGVKTKNPKLKALAFPAALSAFLGITEPAIFGVNLRFRKPFLLSLIAGAIGGAVASLLGLAGKGMGVTIIPGATLYVGNGQLFQYILMVAVSFALGFALTYLFGFEDEVEAAPKAAAAPVATPATPAVELNEETLVSPLSGDVVALENVNDPVFSSGAMGKGLAVKPSEGVVYAPADAEVTIAFETGHAYGLKTASGAELLIHIGIDTVSMNGNGFEKLVAAGDKVKAGTPLAKFDAAKIAEAGLDDTTMIIVTNTADFAEVSPLAEGTIAHGVEFLKVAK
>LS483418.1|SQH01227.1|1618996_1619236_-|SSU-ribosomal-protein-S18p-@-SSU-ribosomal-protein-S18p,-zinc-independent
MAQQRRGGFKRRKKVDYIAANKIEYVDYKDTELLSRFISERGKILPRRVTGTSAKNQRKVTTAIKRARVMALLPFVNED
>LS483418.1|SQH01228.1|1619268_1619763_-|single-stranded-DNA-binding-protein
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTRSYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDDDLPF
>LS483418.1|SQH01229.1|1619774_1620065_-|30S-ribosomal-protein-S6
MAKYEILYIIRPNIEEEAKNALVARFDSILTDNGATIVESKAWEKRRLAYEIKDFREGLYHIVNVEANNDEALKEFDRLSKINGDILRHMIVKLDA
>LS483418.1|SQH01230.1|1620304_1621468_+|transposase
MKNKHLTLSDRNDIQIGIEQLKPFSAIAAKLGKDPSTISKEVRRNRVIKENSSTSNCEACPLLKKTPYVCNACPKKRSNCGYQKQFYYAKRAQLDYEVKLSDSRTGVALNKEEFYRMDEIVSAAIQKGQHLNHIIASNEMSASRASIYRYLEKGYLSTKPIDFPRVVKFRKRRIRNLQPIPKIAKEGRSYEDFQRFLTEKGISYWLEMDTVTGRIGGKVLLTFNLSFCNFIFAQLLDNKTANEVAKHLYAIKNDLHQKEMDFCEIFPVILTDNGGEFARVDDIEMDVRGESKLFFCDPNRSDQKGRIEKNHTLIRDILPKRSSFDNLTQEDINLVCSHINSVKRASFNGKSAYELFTFTYGEELATLLGISKIDPENVIQSPRLLDK
>LS483418.1|SQH01231.1|1621786_1622776_-|lipoate-protein-ligase
MKYIVNNSNDPAYNIALEAYAFKELTDIDEIFILWINEPAIIIGKHQNAIEEINKEFTDEKGIHVVRRLSGGGAVYHDLNNLNYTIISNKADEGAFDFKTFSKPVIDTLATLGVEANFTGRNDLEIDGKKICGNAQAYAKGRMMHHGCLLFDVDMSVLASALKVSKDKIESKGVKSVRARVTNINNELPDKMTVLEFKDAILNQMKQEYPEMDEYVLTEDDLARIQEIRDSQFATWDWTYGQTPEYTVERSVRYPAGKITTYIKAEKSVIESIKIYGDFFGIGDVADVEDLLVGTRYEYADVLAKLQEIDTTHYFSRMTTEEVAKAIVA
>LS483418.1|SQH01232.1|1622905_1624096_+|membrane-protein
MSKHLKSFLIFYLAASIFLPFMWFINAPLICFVLPLYLTWKNIRHFWDLLKKQLKEYSFWINDGLIFFLGTGLSWLALEMAQVVYVDWPETLVNNQIHSPMQTEAWSGQFFLLLLGVLAYLVLNIFQTKLLPPLLTVLLISCLYPSFVFAVLWTIQLSSLIETDFFTYCYLCLVPFNICLIYSRTILQTIQLWQAELAKQSNPRFPRLSALLQKSLSLPIWLLFFSLPYLAVLGSYLILFGQKPDQLLQMWTETSDWALSEKISPPNAFYDEHYLCTVGAAGHRKLVKPIRMGERHGHRVVVNRQLQIANAFEQILEERCPRLHRCVRSNYDRYGYPISKHIRKAWQADLIYLIMKPAEWLFLIVIYLHDRQPENRIAVQYLPLSKNLLPQENTSN
>LS483418.1|SQH01233.1|1624147_1625908_-|pyruvate/2-oxoglutarate-dehydrogenase-complex,-dihydrolipoamide-dehydrogenase-(E3)-component,-and-related-enzymes
MAIEIIMPKLGVDMQEGEIIEWKKQEGDFVNEGDVILEMMSDKTSMELEAEESGVLLKIVHGNGATVPVTEVIAYLGAEGESVEVGAALAPAEVAQATADLKAAGLEVPATPAAAPQAPKAELAADEYDMVVVGGGPAGYYAAIRGAQLGGKIAIVEKSEFGGTCLNKGCIPTKTYLKNAEILDGLKIAAERGINLASTNYTVDMDKTVDFKNKVVKTLTGGVQGLLKANKVTIFNGLGQVNPDKTVVIGDKVIKGRSIILATGSKVSRINIPGIDSKLVLTSDDILDLREIPKSLTVMGGGVVGVELGLVYASYGTEVTVVEMADRIIPGMDREVSVELQKVLSKKGMKFLTSVGVSEIVEANNQLTIKLNDGSEIVSEKALLSIGRVPQLAGLENLNLELDRGRIKVNEYQETSIPGIYAPGDVNGTKMLAHAAYRMGEVAAENAIHGNHHKAKLDFTPAAVYTHPEIAMVGLTEDQAIEKYGKENILIGRNSFTGNGRAIASNEAHGFVKVIADKKYHEILGVHIIGPVAAEMINEAATIMESELTVDDVAASIHGHPTFSEVMYEAFLDVLGVAIHNPPKRK
>LS483418.1|SQH01234.1|1626181_1627570_-|branched-chain-alpha-keto-acid-dehydrogenase-subunit-E2
MAIEIIMPKLGVDMQEGEIIEWKKQEGDFVNEGDVILEMMSDKTSMELEAEESGVLLKIVHGNGATVPVTEVIAYIGAEGETVEAGASSAPAVEPAAAIEEVPAGRTPVIVAPATAAKPQGSGKVRATPAARKLARELGIDLGLVPGTGANGRVHKVDVEDFKGAAPKATPLAARIAADQGVDLSTLTGSGVNGKIVKNDVLAVLAPVAVETAAPVPKAEEKPAKELPEGVEIIKMSPMRKAISKGMVNSYLTAPTFTLNYDIDMTNLMALRKQVLEPIMNKTGLKVTFTDLIGLAVVRTLMKEEHRYMNASLINDAQEIELHKFVNLGIAVGLDDGLVVPVVHGADKMSLSDFVVASKDVIKKAQSGKLKGAEMSGSTFSITNLGMFGTKTFNPIINQPNSAILGVASTVQTPVVIDGEIKIRPIMALCLTIDHRIIDGMNGAKFMVDLKNLLENPLELLI
>LS483418.1|SQH01235.1|1627910_1628906_-|pyruvate/2-oxoglutarate-dehydrogenase-complex,-dehydrogenase-(E1)-component,-beta-subunit
MAETKVMALREAINLAQSEEMRKDEKVFLMGEDVGIYGGDFGTSVGMLDEFGPKRVRDTPISEAAIAGSAVGAAQTGLRPIVDLTFMDFITIALDAIVNQAAKTNYMFGGGLKTPVTFRVASGSGIGSAAQHSQSLEAWLTHIPGIKVVAPGTANDAKGLLKSSILDNNPVIFLEPKALYGKKEEVNLDPDFYIPLGKGEIKREGTDVTIISYGRMLERALKAAEEVAAEGISVEVVDPRTLIPLDKELIIESVKKTGKVILVNDAYKTGGFIGEIASIITESEAFDYLDAPIIRIASDDVPVPYANILENAVLPNVEKIKAAIYKQVNKG
>LS483418.1|SQH01236.1|1629192_1630161_-|pyruvate/2-oxoglutarate-dehydrogenase-complex,-dehydrogenase-(E1)-component,-alpha-subunit
MVSITKEQHLDMFLKMQQIRDVDMKLNKLVRRGFVQGMTHFSVGEEAAAVGPIAGLTDEDIIFSHHRGHGHVIAKGIDINGMMAELAGKATGTSKGRGGSMHLANVEKGNFGSNGIVGGGYALAVGAALTQQYLGTDNIVIAFSGDSATNEGSFHESMNLAAVWNLPVIFFITNNRYGISTDISYSTKIPHLYQRAAAYGIPGHYVEDGNDVIAVYEKMQEVIEYVRAGKGPAMVEVESYRWFGHSTADAGVYRTKEEVNEWKAKDPLKKYRKYLTENKIATDEELDAIEAQVAEQVEASVKFAQESPDPDISVAYEDVFVD

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Crispr_ID: LS483418_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483418_4

1663157-1663280

Orphan

Consensus_repeat	Method
CCAATCAACCACTACTGCGCTAAGATGTTGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483418_4

>merge|LS483418|4|1663157-1663280|CRISPRCasFinder
CCAATCAACCACTACTGCGCTAAGATGTTGACACTAACGTTGAGAAGCGGTACAGGGCTTGAGCCCAGCTTCACTCCACTGGACTGTTAAACCCAATCAACCACTACTGCGCTGAGATGTTGAC

>LS483418|4|4|1663157-1663280|CRISPRCasFinder
CCAATCAACCACTACTGCGCTAAGATGTTGAC	ACTAACGTTGAGAAGCGGTACAGGGCTTGAGCCCAGCTTCACTCCACTGGACTGTTAAAC
CCAATCAACCACTACTGCGCTGAGATGTTGAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483418.1\|SQH01277.1\|1670069_1671320_-\|threonine-dehydratase	unknown	unknown	gnl\|CDD\|236318
LS483418.1\|SQH01276.1\|1669157_1670060_-\|membrane-protease-subunit	unknown	unknown	gnl\|CDD\|259805
LS483418.1\|SQH01263.1\|1653932_1655723_-\|Oligopeptide-ABC-transporter,-periplasmic-oligopeptide-binding-protein-OppA	unknown	unknown	gnl\|CDD\|173875
LS483418.1\|SQH01265.1\|1657429_1658845_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|131035
LS483418.1\|SQH01261.1\|1651604_1652546_-\|peptide-ABC-transporter-ATPase	unknown	unknown	gnl\|CDD\|224048
LS483418.1\|SQH01278.1\|1671602_1672625_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
LS483418.1\|SQH01264.1\|1655935_1657177_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
LS483418.1\|SQH01271.1\|1664622_1665345_-\|adaptor-protein	unknown	unknown	gnl\|CDD\|235030
LS483418.1\|SQH01274.1\|1667993_1668737_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
LS483418.1\|SQH01266.1\|1659194_1659635_-\|NifU-like-protein-involved-in-Fe-S-cluster-formation	unknown	unknown	gnl\|CDD\|273918
LS483418.1\|SQH01269.1\|1662127_1662901_-\|ABC-transporter-ATPase	unknown	unknown	gnl\|CDD\|223473
LS483418.1\|SQH01275.1\|1668862_1669072_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483418.1\|SQH01260.1\|1650646_1651603_-\|peptide-ABC-transporter-transporter-permease	unknown	unknown	gnl\|CDD\|223674
LS483418.1\|SQH01279.1\|1672765_1673242_-\|acetolactate-synthase-3-regulatory-subunit	unknown	unknown	gnl\|CDD\|183365
LS483418.1\|SQH01272.1\|1665472_1666309_-\|undecaprenyl-pyrophosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
LS483418.1\|SQH01268.1\|1660848_1662111_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223791
LS483418.1\|SQH01267.1\|1659621_1660845_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
LS483418.1\|SQH01270.1\|1663453_1664626_-\|UDP-N-acetylmuramyl-pentapeptide-phosphotransferase/UDP-N-acetylglucosamine-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
LS483418.1\|SQH01262.1\|1652548_1653547_-\|peptide-ABC-transporter-transporter-ATPase	unknown	unknown	gnl\|CDD\|223521
LS483418.1\|SQH01273.1\|1666435_1668001_+\|amino-acid-ABC-transporter-amino-acid-binding-protein/permease	unknown	unknown	gnl\|CDD\|270345

Protein	Function_ID	Function_description	E-value
LS483418.1\|SQH01277.1\|1670069_1671320_-\|threonine-dehydratase	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
LS483418.1\|SQH01276.1\|1669157_1670060_-\|membrane-protease-subunit	gnl\|CDD\|259805	cd03407, SPFH_like_u4, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	3.71678e-128
LS483418.1\|SQH01263.1\|1653932_1655723_-\|Oligopeptide-ABC-transporter,-periplasmic-oligopeptide-binding-protein-OppA	gnl\|CDD\|173875	cd08510, PBP2_Lactococcal_OppA_like, The substrate binding component of an ABC-type lactococcal OppA-like transport system contains. This family represents the substrate binding domain of an ATP-binding cassette (ABC)-type oligopeptide import system from Lactococcus lactis and other gram-positive bacteria, as well as its closet homologs from gram-negative bacteria. Oligopeptide-binding protein (OppA) from Lactococcus lactis can bind peptides of length from 4 to at least 35 residues without sequence preference. The oligopeptide import system OppABCDEF is consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and also is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
LS483418.1\|SQH01265.1\|1657429_1658845_-\|ABC-transporter-permease	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
LS483418.1\|SQH01261.1\|1651604_1652546_-\|peptide-ABC-transporter-ATPase	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	2.10004e-119
LS483418.1\|SQH01278.1\|1671602_1672625_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
LS483418.1\|SQH01264.1\|1655935_1657177_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	5.36323e-91
LS483418.1\|SQH01271.1\|1664622_1665345_-\|adaptor-protein	gnl\|CDD\|235030	PRK02315, PRK02315, adaptor protein MecA.	2.58092e-83
LS483418.1\|SQH01274.1\|1667993_1668737_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	7.30548e-147
LS483418.1\|SQH01266.1\|1659194_1659635_-\|NifU-like-protein-involved-in-Fe-S-cluster-formation	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.35279e-67
LS483418.1\|SQH01269.1\|1662127_1662901_-\|ABC-transporter-ATPase	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.74827e-148
LS483418.1\|SQH01260.1\|1650646_1651603_-\|peptide-ABC-transporter-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.06681e-112
LS483418.1\|SQH01279.1\|1672765_1673242_-\|acetolactate-synthase-3-regulatory-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.6123e-73
LS483418.1\|SQH01272.1\|1665472_1666309_-\|undecaprenyl-pyrophosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	1.49616e-101
LS483418.1\|SQH01268.1\|1660848_1662111_-\|ABC-transporter-permease	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	4.97321e-124
LS483418.1\|SQH01267.1\|1659621_1660845_-\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
LS483418.1\|SQH01270.1\|1663453_1664626_-\|UDP-N-acetylmuramyl-pentapeptide-phosphotransferase/UDP-N-acetylglucosamine-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	9.66017e-81
LS483418.1\|SQH01262.1\|1652548_1653547_-\|peptide-ABC-transporter-transporter-ATPase	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.71068e-159
LS483418.1\|SQH01273.1\|1666435_1668001_+\|amino-acid-ABC-transporter-amino-acid-binding-protein/permease	gnl\|CDD\|270345	cd13627, PBP2_AA_binding_like_2, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold. This putative amino acid-binding protein belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.18368e-91

>LS483418.1|SQH01269.1|1662127_1662901_-|ABC-transporter-ATPase
MSVLEIKDLHVEIEGKEILKGVNLTLKTGEIAAIMGPNGTGKSTLSAAIMGNPSYEVTQGEILFDGVNILELEVDERARMGLFLAMQYPSEIPGITNAEFLRAAMNAGKEDEDKISVRDFITKLDEKMELLNMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPTFALLDEIDSGLDIDALKVVSKGINAMRGEGFGAMIITHYQRLLNYITPDVVHVMMEGRVVLSGGPELAQRLEKEGYVQVAAELGIDYKEDDI
>LS483418.1|SQH01268.1|1660848_1662111_-|ABC-transporter-permease
MTKEKIQEFSALQAEPTWLTDLRLKAFDKIAELDLPVIERVKFHRWNLGDGSLATNDEIGAVPDFTAIGDNPMLVQVGSQTILEQLPVALVEKGVVFTDFASAMDVIPDVLEKYLGAAVAYDEHKLAAYNTAYFNATAVLYVPDNVEIDQPVEALFYQDSTSPVAFNKRVLIIAGKNAKLNYLERFESLGDGAATTSANIVVEVIALAGSQIKFAAIDRLGKHLDTYLNRRGYLGNDATIDWAIGLLNEGNVVADLDSELKGNGSHANLKVVGLSSGRQVQGVDTRVTNYGHNSVGHILQHGVILESGTLTFNGIGHIVRGAKGADAQQESRVLMLSDKARSDANPILLIDENEVTAGHAASIGQVDPEDMYYLMSRGLDRATAERLVVRGFLGSVITEIPVKEVRDQLIAVIEEKLTKR
>LS483418.1|SQH01267.1|1659621_1660845_-|cysteine-desulfurase
MDLERIRKEFSILDQVVNDEPLVYLDNAATTQKPQQVLDVLADYYQKDNANVHRGVHTLSERATTRYEAARQKVADFIQAKSSKEILFTRGTTTSLNWVAQFAKEILQPDQEVIISVQEHHSNIIPWQQACQQTGAKLRYVTLKDGELDMDHLRSLLSSKTKFVSLAHVSNVLGGVVPIGEIAELVHQVGAYLVVDGAQSVPHMGVNVQELDVDFYAFSGHKMLGPTGIGILYGKEELLNLMSPVEFGGEMIDFVYEQSATWKELPWKFEAGTPNIAGAIGLGAAIDYLTEIGMDAIQAHEAELVDYVFPKLQAIPGLTIYGSQDLSKRTGVIAFNLDDLHPHDVATALDYEGVAVRAGHHCAQPLLRYLQVPATVRASFYIYNTKADCDKLVEAIIKTKEFFNGPI
>LS483418.1|SQH01266.1|1659194_1659635_-|NifU-like-protein-involved-in-Fe-S-cluster-formation
MALSRLDSLYMAVVSEHSKSPRHRGSLDGVEKLELHNPTCGDVIELSVKIEKDVITDIAFDGVGCTISTASASMMTEAVLGKEISQIQELAEIFSQMVRGQEDPRQKELGDASLLAGVAKFPQRIKCATLPWNALKKALERSDSAE
>LS483418.1|SQH01265.1|1657429_1658845_-|ABC-transporter-permease
MSEERIEPTPIDLGEYKFGFHDENVELVASTGKGLNEEVIREMSRIKGEPEWMLEFRLKSYETFKKMPMQTWGADLSELDFDDIVYYQKPSDKPARSWDDVPDKIKETFERIGIPEAERAYLAGASAQYESEVVYHNMKEEYDKHGIIFTDTDTALKEHPELFKKYFGKLVPPSDNKLAALNSAVWSGGTFIYVPKGVKLDIPLQTYFRINNEGTGQFERTLIIVDEGASVHYVEGCTAPTYSTASLHAAIVEIIAHEGAYMRYTTIQNWSDNVYNLVTKRARAEKNATVEWIDGNLGAKTTMKYPAVYLEGEGARGTMLSIAFANKGQVQDTGAKMIHNAPRTSSSIVSKSIARGGGEVNYRGQVTFAKNSAKSISHIECDTIIMDDISKSDTIPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLSESEATEMIVMGFVEPFTKELPMEYAVELNRLIAYEMEGSVG
>LS483418.1|SQH01264.1|1655935_1657177_+|D-alanyl-D-alanine-carboxypeptidase
MRKLLLTLTTILAVFLTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISKTLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTELSNVNLDERSYSVRDLLNASLITSSNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSLVTLVKKSEAFGDSKIKVFNGEKETSPVVAAADLTVVQRNQTDNVPTATFTTDIKEIDAPLKAGTLVSKLQLKDQDLIGKGYISEQTGVDMIIPSDMKEASWPFSWWNQFVRYVNEKL
>LS483418.1|SQH01263.1|1653932_1655723_-|Oligopeptide-ABC-transporter,-periplasmic-oligopeptide-binding-protein-OppA
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVADAQLKYAWVSPTTSSGLLIDELTENTTDSTFGGMVDISMFGYDGERKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLNIEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWKIKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLESSYEYISFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYNPEKAKKLLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRIVEGKSFYNSVQANDAAIDMYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESEKITAVNKRVKSYDTKYGSASGTGLAYEGIELTADKGVVAE
>LS483418.1|SQH01262.1|1652548_1653547_-|peptide-ABC-transporter-transporter-ATPase
MATEKPLLDIKDLHVGFRIGDDYFDAVDGVDISLQKNEILAIVGESGCGKSTLATTIMGLHNPLNTKITGSIQYNDMELIGMDEAKYNTVRGNDIGMIFQDPLASLNPLMTIGAQIDEALFYHTDLDANARTERVLELLAQVGIPNPKRTFKQYPHELSGGMRQRIIIAMALSCKPPIIIADEPTTALDVTIQAQILDLLNDIQAETGSGIILITHDLGVVAETADRVAVMYGGQFVEVAPVEELFTNPKHPYTRSLLKSNPQSGSEGGDLHVIEGIVPPITKMVRKGCRFAPRIPWIGAEAHEENPSMHEVGPNHFVRCTCHETFYFEGEA
>LS483418.1|SQH01261.1|1651604_1652546_-|peptide-ABC-transporter-ATPase
MGFIEVKDLKVHYPIRSGFFNRVTDHVYAVDGVNIEFEEGKTYGLVGESGSGKSTIGKAIIGLERATSGQIIYEGQDVTNKSRGKKGNFNRDVQMIFQDSLSSFNPKKRILDIIAEPIRNFDRLSPDEEKKKVLQLLDTIGLNEEALIKYPHEFSGGQRQRIGVARALASNPRLIIADEPVSALDLSVQAQVLNYMKRIQDEFKLSYLFISHDLGVVQHMCDELFIMYRGRFVETGNKNDIYNNPQHIYTKRLLSAIPTIDPLNRLKNKEKRLAAEKEYQEMQGQYYDENGRVYDLRSFSETHQVALPEGGQN
>LS483418.1|SQH01260.1|1650646_1651603_-|peptide-ABC-transporter-transporter-permease
MWKTVLRRLLMMIPQIIILSVIAFFVAKMMPGDPFTGLIDPNIDPAIIEQKRIAAGYYDPIPVQYFRWVGNLLQGDFGQSVIFKQPVVDVIMQRLNNTIGLSLLTMVLTYLIALPLGMIAGRYQNSLADKIIGVYNFLTFSTPTFVFAILMLWMFGFSLGWFPTRGSISGGVEGFAATLSRLHHMILPAITMAILSTTVTIQYLRTGIIDAKSQDYVRTARAKGVPERVVYNRHIFRNSILPIASFLGYELTGLIGGSIFIENIFTYPGIGQLFFNSISSRDYSVILALLLVFGMGTLLGTLISDIIMSIVDPRIRVK
>LS483418.1|SQH01270.1|1663453_1664626_-|UDP-N-acetylmuramyl-pentapeptide-phosphotransferase/UDP-N-acetylglucosamine-1-phosphate-transferase
MIPFALKYIMVIITTMVISAIATPLVRFMSLRVGAVDNPNARRINKVPMPSAGGLAIFVAFTISVLWFLPGIVTRVNYHGTYLHYIWPLVLASSIIVLTGFIDDVKELKPAPKMFGILAAATIIWIFTEFRFDSFKIPFGGPFLQFPVWLSFLLTVLWIVSITNAVNLIDGLDGLVSGVSIISLTTMGIVSYFFLHDSNIFLTLTIFVLVAAIVGFLPYNYNPAIIYLGDTGALFIGFMIGVLSLQGLKNSTAVAVVTPMIILGVPITDTVVAIIRRKLSGQKIYEADKMHLHHRLLSLGLTHRGTVLVIYAISFLFSLTSLLLNVSSRIGGILLLVTMGLGIEILCELIGIFGINRTPLLNLLRFIGNSSYRQEKIAKYKKCCEEKKRK
>LS483418.1|SQH01271.1|1664622_1665345_-|adaptor-protein
MKVKQISDSTLKITIKLDDLEERGMELSDFLIPQEKTEEFFYTVLDELDLPMTFRESGMLSFRVTPKPDRVDIFVTKSDLDQNLNFDEFTDLSELGDVASMTPDEFFKSLEQTVREKSAPDATAVRHLEEVEQEEEADEEEQERYIYYILEFPTIEDLFTFVGTVDYPVEESELYKMDGHYYLTVLINVENRSKQYPGYILSRMLEFTNDTKLTRPALQEHGTLMLPLAAIEELRKVPTV
>LS483418.1|SQH01272.1|1665472_1666309_-|undecaprenyl-pyrophosphate-phosphatase
MLLELLKAIFLGIIEGVTEWLPVSSTGHLILVQEFVKLNQSKNFLEMFNIVIQLGAILAVMTIYFKKLNPFQPGKTKRDIQLTWQLWAKVVIACIPSILIAVPLDNWFEAHFNFMVPIAIALIVYGIAFIWIENRNRGIEPQVTDLAKMSYKTALLIGCFQVLSIVPGTSRSGATILGAIILGTSRSVAADFTFFLGIPTMFGYSGLKAVKYFLDGNSLNMEQVWILLVASVTAYLVSLVVIRFLTDFVKKHDFTVFGYYRIILGAILLVYAFITFLF
>LS483418.1|SQH01273.1|1666435_1668001_+|amino-acid-ABC-transporter-amino-acid-binding-protein/permease
MKRKLSIFLLTLIAVFSVTTGVRADEYLRVGMEAAYAPFNWTQEDDSNSAVPIEGTNQFANGYDVQVAKKIAASMDKELLVVKTKWEGLVPALTSGKIDMIIAGMSPTEERKKEIAFSDSYYTSIPTLVVRSDSQYANATSLEDFAGAKITAQQGVYLYDLIDQIEGANKQTAMGDFSQIRQALESGIIDAYVSERPEGRTAEAANKAFKMVELADSFETNAEDVTIAVGMRKDDERIAQVNEVLATISEEEQIALMDDMIENQPVEEASEGETPSFFAQVWNIVVNNWQQLLRGTGMTLLISILGTIIGTAIGLLIGVFRTAPKAANKALAIGQKVLGWIINIYIEIFRGTPMIVQSMVIYYGTAQAFGLNLDRTLAAIFIVSINTGAYMSEIVRGGIFAVDKGQFEAATALGFTHNQTMRKIVLPQVIRNILPATGNEFVINIKDTSVLNVISVVELYFSGNTVATQTYQYFQTFTVIAIIYFILTFTVTRILRAVEKYFDTDTYTTGANQMQVEVPHD
>LS483418.1|SQH01274.1|1667993_1668737_+|amino-acid-ABC-transporter-ATP-binding-protein
MTKNVILEIKNLKKSYGQNQVLKDISISVEKGEVISIIGSSGSGKSTFLRSINLLETPTEGQILYHGQDVLAKGYDLTTYREKLGMVFQSFNLFNNLNVLENAIVAQTTVLKRDRAEAEKIAKENLNKVGMTEQYWQAKPSQLSGGQKQRVAIARALSVDPEVILFDEPTSALDPEMVGEVLKTMQDLAKSGLTMLIVTHEMEFARDVSDRVIFMDKGVIAEEGSPQQIFENPQEERTREFLQRFLG
>LS483418.1|SQH01275.1|1668862_1669072_-|Uncharacterised-protein
MTSYEKVAAVVGWVREKKITGYRISKETNAREMSVIALAQGRAKIDNISFATALGLIDFYDKNHKKFEN
>LS483418.1|SQH01276.1|1669157_1670060_-|membrane-protease-subunit
MVFGPIVFIGSFLFFVLIALILIASGLYVVKQQTVAIIERFGKYQKTSTSGINFKIPFGVDVIAARIQLRMLQSEIVVETKTQDNVFVTMNVATQYRVNENNVTDAYYKLMHPEAQIKSYIEDALRSSVPKLTLDELFEKKDEIALEVQKQVAEEMSTYGYVIVKTLITKVEPDAEVKQSMNEINAAQRKRVAAQELAEADKIKIVTAAEAEAEKDRLHGVGIAQQRKAIVDGLADSIRELKESNVSLSEEQIMSILLTNQYLDTLNNFAQGGNQTIFLPGNPEGVEDIRTQILSSLRAK
>LS483418.1|SQH01277.1|1670069_1671320_-|threonine-dehydratase
MITAKNVEQAYSVLKRVVVRTPLDYSRYLSEKYGATIYLKRENEQRVRSFKIRGAYYAISQLTDDEKSRGVVCASAGNHAQGVAYTCQEMQIPATIFMPITTPQQKIGQVKFFGGDYVEIRLVGDTFDESAKAAQDYTQESGKTFIDPFDDENVQAGQGTVAYEILEEAEEQTISFDQILVPIGGGGLVAGVSAYLKEHAPEIKIVGVEASGARSMKAAFDKGRPVKLDQIDKFADGIAVQKVGKSTYEVARKYVDRLIGVDEGWISGTILDLYSKLGIVAEPAGAATIAALEVVKDQIKGQTICCIISGGNNDINRMPEMEERALIYEGIKHYFVVNFPQRPGALREFVNDILGPNDDITRFEYIKRANKGTGPVLIGIALGDKTDYTQFISRLEEFDPQYINLHENDSLYKMLV
>LS483418.1|SQH01278.1|1671602_1672625_-|ketol-acid-reductoisomerase
MTVTMQYEKDVTVAALDGKRIAVIGYGSQGHAHAQNLRDTGHDVIIGVRAGKSFDKAKEDGFETFEVAEAAKQADVIMILAPDEIQADLYNEEIAPNLEAGNALGFAHGFNVHFEFIKVPADVDVFMCAPKGPGHLVRRTFEEGFGVPALYAVYQDATGNAKHIAMDWAKGVGSARVGLLETTFKEETEEDLFGEQAVLCGGLTALMQAGFEVLTEAGYAPELAYFEVLHEMKLIVDLVYEGGFKKMRQSISNTAEFGDYVSGPRVITDQVKENMKAVLADIQSGKFANDFVNDYKAGRPRMEAYRKEAENLEIEKVGAELRKAMPFVGRNDDDAFKIYN
>LS483418.1|SQH01279.1|1672765_1673242_-|acetolactate-synthase-3-regulatory-subunit
MRRMLTAKLRNSSGVLNRFTGVLSRRQINIESISVGPTEVDGISRVTVIVDVVSHDEVEQIIKQLNRLIDVVRVRDLTDIPHLEREVILVKISAPPTKRAEILAIIQPFRANVVDVAPHSITIQMTGDGDKIDALLRVIQPYGIKNIARTGATGFSRD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

31438 : 41700

Microbacterium_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG99733.1\|31438_35158_+	phosphoribosylformylglycinamidine synthase domain-containing protein	A6N228	Microbacterium_phage	8.6e-39	26.9
SQG99734.1\|35160_36615_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-58	35.4
SQG99735.1\|36670_37693_+	phosphoribosylaminoimidazole synthetase	A0A127KMF9	Cyanophage	1.3e-58	42.7
SQG99736.1\|37689_38241_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-26	38.5
SQG99737.1\|38250_39798_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.6e-74	47.6
SQG99738.1\|39923_41186_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
SQG99739.1\|41211_41700_+	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase	A0A2P0VNU7	Tetraselmis_virus	2.7e-17	45.0

DBSCAN-SWA_2

517050 : 650702

125

Streptococcus_phage(69.39%)

transposase,tRNA,integrase

attL 538082:538101|attR 594994:595013

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH00166.1\|517050_518214_-\|transposase	transposase	H7BWC8	unidentified_phage	8.2e-12	24.9
SQH00167.1\|518415_519417_+	adenosine deaminase	NA	NA	NA	NA
SQH00168.1\|519460_520243_-	ABC transporter permease	NA	NA	NA	NA
SQH00169.1\|520259_520967_-	multidrug ABC transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	1.6e-18	26.6
SQH00170.1\|520959_521334_-	transcriptional regulator	NA	NA	NA	NA
SQH00171.1\|521487_524598_+	DNA polymerase III DnaE	A0A2L1IZ23	Streptomyces_phage	1.1e-111	32.8
SQH00172.1\|524682_525693_+	6-phosphofructokinase	NA	NA	NA	NA
SQH00173.1\|525759_527265_+	pyruvate kinase	NA	NA	NA	NA
SQH00174.1\|527425_530851_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
SQH00175.1\|531175_532285_-	glycine/D-amino acid oxidases (deaminating)	NA	NA	NA	NA
SQH00176.1\|532369_532987_+	lysophospholipase L1 and related esterase	NA	NA	NA	NA
SQH00177.1\|533029_533572_+	Signal peptidase I	NA	NA	NA	NA
SQH00178.1\|533761_535573_+	glucosamine--fructose-6-phosphate aminotransferase	Q84421	Paramecium_bursaria_Chlorella_virus	2.1e-99	37.6
SQH00179.1\|535724_536366_+	amino acid (glutamine) ABC transporter permease	NA	NA	NA	NA
SQH00180.1\|536375_537008_+	polar amino acid ABC transporter ATPase	G3M9Y6	Bacillus_virus	1.1e-31	38.9
SQH00181.1\|537022_537865_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
538082:538101	attL	NA	NA	NA	NA
SQH00182.1\|539704_540343_-	Zn-dependent hydrolase, including glyoxylases	A0A1X9I5D3	Streptococcus_phage	1.0e-125	99.5
SQH00183.1\|540450_542919_+	Rad3-related DNA helicase	A0A1X9I5C8	Streptococcus_phage	0.0e+00	98.5
SQH00184.1\|543078_544155_+	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	1.5e-193	99.2
SQH00185.1\|544219_545458_+	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.0e-217	96.8
SQH00186.1\|545467_546253_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.0e-130	95.4
SQH00187.1\|546275_546680_-	transcriptional regulator	A0A1X9I6A2	Streptococcus_phage	3.2e-64	99.3
SQH00188.1\|546806_547658_+	DegV	A0A1X9I5J4	Streptococcus_phage	1.3e-152	98.6
SQH00189.1\|547756_549016_-	GntR family transcriptional regulator	A0A1X9I5H2	Streptococcus_phage	1.2e-239	98.8
SQH00190.1\|549138_549873_+	UPF0246 protein YaaA	A0A1X9I5I0	Streptococcus_phage	1.5e-120	99.5
SQH00191.1\|549977_551423_+	Cps2A	A0A1X9I5X1	Streptococcus_phage	2.4e-226	99.5
SQH00192.1\|551440_552130_+	Cps2B	A0A1X9I5E1	Streptococcus_phage	1.3e-110	96.1
SQH00193.1\|552139_552817_+	Cps2C	A0A1X9I5D6	Streptococcus_phage	8.1e-121	99.1
SQH00194.1\|552855_553587_+	Cps2D	NA	NA	NA	NA
SQH00195.1\|553611_554991_+	Cps2E	NA	NA	NA	NA
SQH00196.1\|555025_556195_+	Cps2F	NA	NA	NA	NA
SQH00197.1\|556198_557356_+	glycosyltransferase	NA	NA	NA	NA
SQH00198.1\|557744_559115_+	Cps2H	NA	NA	NA	NA
SQH00199.1\|559227_560382_+	Cps2I	NA	NA	NA	NA
SQH00200.1\|560520_561519_+	Cps2J	A0A1V0SAH6	Catovirus	4.7e-08	34.8
SQH00201.1\|561511_562516_+	cell wall biosynthesis glycosyltransferase	A0A1V0SAH6	Catovirus	6.0e-11	33.6
SQH00202.1\|562555_562867_+	membrane protein	NA	NA	NA	NA
SQH00203.1\|563832_564000_+	N-acylneuraminate cytidylyltransferase	NA	NA	NA	NA
SQH00204.1\|564358_565330_+	lipooligosaccharide sialyltransferase	NA	NA	NA	NA
SQH00205.1\|565338_566745_+	O-antigen and teichoic acid export protein	NA	NA	NA	NA
SQH00206.1\|567267_568284_+	sialic acid synthase	NA	NA	NA	NA
SQH00207.1\|568295_569429_+	UDP-N-acetylglucosamine 2-epimerase	NA	NA	NA	NA
SQH00208.1\|569442_570069_+	acetyltransferase	NA	NA	NA	NA
SQH00209.1\|570077_571310_+	CMP-N-acetylneuraminic acid synthetase	NA	NA	NA	NA
SQH00210.1\|571506_572013_+\|transposase	IS5 family transposase	NA	NA	NA	NA
SQH00211.1\|571972_572380_+	Transposase, IS4	NA	NA	NA	NA
SQH00212.1\|572629_572980_+\|transposase	transposase	NA	NA	NA	NA
SQH00213.1\|573513_573699_+	IS66 family element, Orf1	NA	NA	NA	NA
SQH00214.1\|573679_573967_+\|transposase	Degenerate transposase	NA	NA	NA	NA
SQH00215.1\|574083_574290_+\|transposase	putative transposase remnant (pseudogene)	NA	NA	NA	NA
SQH00216.1\|574243_575200_+\|transposase	transposase	NA	NA	NA	NA
SQH00217.1\|575183_575576_+\|transposase	transposase	S5VTP8	Leptospira_phage	1.3e-09	34.8
SQH00218.1\|575815_576601_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	6.7e-34	37.0
SQH00219.1\|577220_577487_-\|integrase	integrase family protein	NA	NA	NA	NA
SQH00220.1\|577968_578223_+	Uncharacterised protein	NA	NA	NA	NA
SQH00221.1\|578959_581317_-	DNA repair ATPase	NA	NA	NA	NA
SQH00222.1\|581533_582814_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
SQH00223.1\|582822_583314_+	shikimate kinase	NA	NA	NA	NA
SQH00224.1\|583304_584132_+	prephenate dehydratase	NA	NA	NA	NA
SQH00225.1\|584143_585469_+	transcriptional regulator	NA	NA	NA	NA
SQH00226.1\|585534_586893_+\|tRNA	SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase	E4ZFI6	Streptococcus_phage	2.1e-253	99.1
SQH00227.1\|586958_587141_-\|transposase	transposase	NA	NA	NA	NA
SQH00228.1\|587452_588565_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	2.5e-220	100.0
SQH00229.1\|588664_589210_-	flavoprotein	NA	NA	NA	NA
SQH00230.1\|589272_589722_-	transcriptional regulator	NA	NA	NA	NA
SQH00231.1\|590015_590366_+\|transposase	transposase	NA	NA	NA	NA
SQH00232.1\|590921_591419_+	membrane protein	NA	NA	NA	NA
SQH00233.1\|591415_592597_+	aspartate aminotransferase	NA	NA	NA	NA
SQH00234.1\|592611_593958_+\|tRNA	asparaginyl-tRNA synthetase	A0A2P1EMB4	Moumouvirus	5.3e-55	31.2
SQH00235.1\|594229_594457_+	RelB protein	NA	NA	NA	NA
SQH00236.1\|594446_594716_+	plasmid addiction system, toxin protein	A0A1S5S8E8	Streptococcus_phage	1.8e-18	51.2
SQH00237.1\|595121_596441_+	MATE efflux family protein	NA	NA	NA	NA
594994:595013	attR	NA	NA	NA	NA
SQH00238.1\|596491_596869_+	YjgF family translation initiation inhibitor	NA	NA	NA	NA
SQH00239.1\|596890_597778_+	P-loop ATPase protein	A0A0R8VB27	Thermobifida_phage	3.9e-06	29.0
SQH00240.1\|597774_598749_+	UPF0052 protein spyM18	A1IMD5	Streptococcus_phage	1.8e-145	78.1
SQH00241.1\|598745_599663_+	Putative sporulation transcription regulator WhiA	Q7AWZ3	Streptococcus_phage	1.8e-110	68.0
SQH00242.1\|599948_600644_+	cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases	NA	NA	NA	NA
SQH00243.1\|600904_602134_+	arginine deiminase	NA	NA	NA	NA
SQH00244.1\|602133_602574_+	histone acetyltransferase HPA2-like acetyltransferase	NA	NA	NA	NA
SQH00245.1\|602592_603606_+	ornithine carbamoyltransferase	NA	NA	NA	NA
SQH00246.1\|603723_604671_+	carbamate kinase	NA	NA	NA	NA
SQH00247.1\|605013_606516_+	C4-dicarboxylate anaerobic carrier protein	NA	NA	NA	NA
SQH00248.1\|606634_607975_+	ArcT	NA	NA	NA	NA
SQH00249.1\|608345_612605_+	N-acetyl-beta-hexosaminidase	NA	NA	NA	NA
SQH00250.1\|612895_613369_-	arginine repressor	NA	NA	NA	NA
SQH00251.1\|613417_614446_-\|tRNA	S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuine synthetase)	NA	NA	NA	NA
SQH00252.1\|614791_615496_+	6-phosphogluconolactonase/glucosamine-6- phosphateisomerase/deaminase	NA	NA	NA	NA
SQH00253.1\|615962_616307_+	Uncharacterised protein	NA	NA	NA	NA
SQH00254.1\|616705_617020_+	Uncharacterised protein	NA	NA	NA	NA
SQH00255.1\|617451_617787_+	Uncharacterised protein	NA	NA	NA	NA
SQH00256.1\|617896_618241_+	Uncharacterised protein	NA	NA	NA	NA
SQH00257.1\|618713_618839_+	D-Ala-teichoic acid biosynthesis protein	NA	NA	NA	NA
SQH00258.1\|618855_620391_+	D-alanine--poly(phosphoribitol) ligase subunit 1	A0A2K9KZV5	Tupanvirus	1.3e-36	26.6
SQH00259.1\|620387_621629_+	D-alanine export protein	A0A125RNP0	Pseudomonas_phage	4.6e-21	29.3
SQH00260.1\|621671_621911_+	D-alanine--poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA
SQH00261.1\|621903_623169_+	D-alanyl-lipoteichoic acid biosynthesis protein	NA	NA	NA	NA
SQH00262.1\|623404_624607_-\|transposase	transposase	A0A1X9I619	Streptococcus_phage	2.7e-212	93.8
SQH00263.1\|624880_625996_-	low temperature requirement A	NA	NA	NA	NA
SQH00264.1\|626068_627025_-	glutathione S-transferase	NA	NA	NA	NA
SQH00265.1\|627163_627880_+	16S rRNA uridine-516 pseudouridylate synthase family protein	NA	NA	NA	NA
SQH00266.1\|627893_628373_+	glutathione peroxidase	NA	NA	NA	NA
SQH00267.1\|628391_629393_-	Fe3+-siderophore ABC transporter permease	NA	NA	NA	NA
SQH00268.1\|629389_630415_-	Fe3+-siderophore ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.6e-14	27.0
SQH00269.1\|630428_631358_-	putative ferrichrome-binding protein precursor	NA	NA	NA	NA
SQH00270.1\|631370_632156_-	ferrichrome transport ATP-binding protein	M1I1A6	Acanthocystis_turfacea_Chlorella_virus	2.0e-06	23.7
SQH00271.1\|632307_633753_-	UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase	NA	NA	NA	NA
SQH00272.1\|633899_634649_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
SQH00273.1\|634711_635374_+	DNA uptake protein and related DNA-binding proteins	NA	NA	NA	NA
SQH00274.1\|635357_637595_+	membrane metal-binding protein	M1PSD2	Streptococcus_phage	1.2e-99	96.7
SQH00275.1\|637596_637740_+\|transposase	transposase	NA	NA	NA	NA
SQH00276.1\|637919_638576_+	putative signal transduction protein	M1NSC5	Streptococcus_phage	2.7e-113	98.6
SQH00277.1\|638669_639497_+	membrane protein	M1PFV6	Streptococcus_phage	1.0e-133	98.5
SQH00278.1\|639502_640774_+	tellurite resistance protein,TelA	M1PLC8	Streptococcus_phage	3.3e-208	98.3
SQH00279.1\|640810_641677_-	membrane protein	M1Q1P6	Streptococcus_phage	4.6e-153	99.7
SQH00280.1\|641851_642490_+	thymidylate kinase	M1PSC7	Streptococcus_phage	1.0e-112	98.1
SQH00281.1\|642486_643371_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	4.3e-154	99.0
SQH00282.1\|643390_643708_+	DNA replication intiation control protein YabA	M1PFV3	Streptococcus_phage	3.1e-54	100.0
SQH00283.1\|643709_644573_+	methyltransferase	M1PLC5	Streptococcus_phage	2.1e-158	99.7
SQH00284.1\|645042_646134_+	phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	2.4e-207	100.0
SQH00285.1\|646133_646691_+	histone acetyltransferase HPA2-like acetyltransferase	M1PSC3	Streptococcus_phage	5.9e-93	94.6
SQH00286.1\|646744_647926_+	phosphoglycerate dehydrogenase and related dehydrogenase	M1NSB9	Streptococcus_phage	7.8e-220	99.7
SQH00287.1\|647928_648435_+	methylated DNA-protein cysteine methyltransferase	M1PFU9	Streptococcus_phage	7.0e-93	97.0
SQH00288.1\|648418_648772_+	arsenate reductase	M1PLC0	Streptococcus_phage	1.9e-60	100.0
SQH00289.1\|648788_649688_-	Co/Zn/Cd cation transporter	M1Q1N9	Streptococcus_phage	5.1e-163	99.7
SQH00290.1\|649874_650702_-	3'-exo-deoxyribonuclease	M1PSC0	Streptococcus_phage	2.9e-152	100.0

DBSCAN-SWA_3

811065 : 818095

Bacillus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH00434.1\|811065_811905_+	thymidylate synthase	U5J9N5	Bacillus_phage	1.7e-88	55.7
SQH00435.1\|812190_812703_+	dihydrofolate reductase	A0A076GDN3	Bacillus_phage	1.6e-20	36.6
SQH00436.1\|812705_812879_+	hypothetical membrane associated protein	NA	NA	NA	NA
SQH00437.1\|812900_814127_+\|protease	ATP-dependent protease ATP-binding protein ClpX	G3M9Z9	Bacillus_virus	1.2e-133	59.2
SQH00438.1\|814182_814770_+	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
SQH00439.1\|814792_815206_+	nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	4.3e-24	42.5
SQH00440.1\|815309_815981_+	membrane protein	A0A1S5SAM6	Streptococcus_phage	3.0e-06	35.2
SQH00441.1\|816262_818095_+	GTP-binding protein LepA	A0A2K9L2P9	Tupanvirus	2.2e-19	38.8

DBSCAN-SWA_4

1196130 : 1201911

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH00813.1\|1196130_1196880_-	ABC transporter ATPase	A0A1B0RXA0	Streptococcus_phage	3.4e-27	32.9
SQH00814.1\|1197042_1197585_-	ABC transporter ATP-binding protein	A0A2I4R674	Erysipelothrix_phage	5.9e-21	35.1
SQH00815.1\|1197571_1197844_-	Uncharacterised protein	NA	NA	NA	NA
SQH00816.1\|1198099_1198903_-	beta-lactamase superfamily hydrolase	A0A0C5AJ83	Bacteriophage	2.8e-35	35.6
SQH00817.1\|1198909_1200259_-	Signal transduction histidine kinase	W8CYF6	Bacillus_phage	2.1e-35	34.5
SQH00818.1\|1200251_1200956_-	response regulator	W8CYM9	Bacillus_phage	1.1e-38	39.8
SQH00819.1\|1201149_1201911_+	polar amino acid ABC transporter ATPase	G9BWD6	Planktothrix_phage	5.0e-34	38.4

DBSCAN-SWA_5

1401708 : 1449902

Bacillus_phage(14.29%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH01010.1\|1401708_1402173_-\|transposase	transposase, IS200 family	A0A0H3UZM0	Geobacillus_virus	1.7e-16	36.7
SQH01011.1\|1402347_1404357_-	ABC transporter permease	NA	NA	NA	NA
SQH01012.1\|1404358_1405117_-	ABC transporter	G9BWD6	Planktothrix_phage	6.5e-26	35.3
SQH01013.1\|1405212_1406205_-	Signal transduction histidine kinase	B5LWN0	Feldmannia_species_virus	3.2e-09	27.2
SQH01014.1\|1406197_1406881_-	response regulator	W8CYM9	Bacillus_phage	1.8e-27	33.2
SQH01015.1\|1407050_1408232_+	Esterase/lipase	NA	NA	NA	NA
SQH01016.1\|1408246_1409371_-	transaminase	NA	NA	NA	NA
SQH01017.1\|1409517_1410279_-	lipoprotein	NA	NA	NA	NA
SQH01018.1\|1410288_1411800_-\|holin	periplasmic glycine betaine/choline-binding (lipo)protein of an ABC transporter (osmoprotectant binding protein)	NA	NA	NA	NA
SQH01019.1\|1411799_1412531_-	glycine/betaine ABC transporter ATPase	G3M9Y6	Bacillus_virus	2.8e-26	33.6
SQH01020.1\|1412523_1412970_-	transcriptional regulator	NA	NA	NA	NA
SQH01021.1\|1413283_1413820_-	Signal recognition particle GTPase	NA	NA	NA	NA
SQH01022.1\|1413803_1414217_-	methyl-accepting chemotaxis-like domain-containing protein	NA	NA	NA	NA
SQH01023.1\|1414227_1415004_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
SQH01024.1\|1415005_1415938_-	HPr kinase/phosphorylase	NA	NA	NA	NA
SQH01025.1\|1416154_1417096_+	phosphomannose isomerase	NA	NA	NA	NA
SQH01026.1\|1417349_1417700_+\|transposase	transposase	NA	NA	NA	NA
SQH01027.1\|1418298_1419060_-	Uncharacterised protein	NA	NA	NA	NA
SQH01028.1\|1419129_1419564_-	Protein SprT-like protein	NA	NA	NA	NA
SQH01029.1\|1419550_1420549_-	transcriptional accessory protein	NA	NA	NA	NA
SQH01030.1\|1420579_1421422_-	aldo/keto reductase family oxidoreductase	A0A2H4PQR8	Staphylococcus_phage	5.0e-51	38.9
SQH01031.1\|1422181_1422619_+	GtrA-like protein	NA	NA	NA	NA
SQH01032.1\|1422665_1423589_-	RNase BN	NA	NA	NA	NA
SQH01033.1\|1423636_1424497_-	methionine aminopeptidase	NA	NA	NA	NA
SQH01034.1\|1424493_1425066_-	acetyltransferase	NA	NA	NA	NA
SQH01035.1\|1425161_1426421_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
SQH01036.1\|1426571_1427174_-	putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA
SQH01037.1\|1427217_1428408_-	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	1.6e-140	66.3
SQH01038.1\|1428806_1429274_-	deoxycytidylate deaminase	A7KUY9	Bacillus_phage	1.8e-34	60.0
SQH01039.1\|1429292_1430030_-	Predicted transcriptional regulator with C-terminal CBS domains	NA	NA	NA	NA
SQH01040.1\|1430031_1431066_-	cellulase M-like protein	NA	NA	NA	NA
SQH01041.1\|1431130_1432087_+	biotin--protein ligase	NA	NA	NA	NA
SQH01042.1\|1432052_1432241_-	multidrug ABC transporter ATPase/permease	NA	NA	NA	NA
SQH01043.1\|1432435_1434103_-	DNA polymerase III subunits gamma and tau	A0A1U9WR94	Streptococcus_virus	1.6e-48	38.2
SQH01044.1\|1434102_1434600_-	GAF domain-containing protein	NA	NA	NA	NA
SQH01045.1\|1434664_1434934_-	membrane protein	NA	NA	NA	NA
SQH01046.1\|1435021_1435561_-	PadR family transcriptional regulator	NA	NA	NA	NA
SQH01047.1\|1435562_1436192_-	uridine kinase	A0A2K9L178	Tupanvirus	4.5e-33	38.5
SQH01048.1\|1436274_1436955_+	dehydrogenase and related proteins	NA	NA	NA	NA
SQH01049.1\|1437102_1437261_+	dehydrogenase and related proteins	NA	NA	NA	NA
SQH01050.1\|1437250_1438333_+	superfamily II DNA/RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-28	30.3
SQH01051.1\|1438399_1439797_-	xylanase/chitin deacetylase	NA	NA	NA	NA
SQH01052.1\|1440088_1440472_-	lactoylglutathione lyase and related lyases	NA	NA	NA	NA
SQH01053.1\|1440807_1441023_-\|transposase	transposase of IS200 family	A0A1P8BMC0	Lactococcus_phage	1.6e-09	40.8
SQH01054.1\|1441382_1442075_-	phosphoglyceromutase	NA	NA	NA	NA
SQH01055.1\|1442300_1443485_+	Acetyl-CoA acetyltransferase	NA	NA	NA	NA
SQH01056.1\|1443513_1444668_+	3-hydroxy-3-methylglutaryl CoA synthase	NA	NA	NA	NA
SQH01057.1\|1444729_1446010_+	hydroxymethylglutaryl-CoA reductase	NA	NA	NA	NA
SQH01058.1\|1446237_1447413_+\|transposase	transposase	A0A1X9I5G9	Streptococcus_phage	1.1e-29	93.3
SQH01059.1\|1447639_1448107_-	histone acetyltransferase HPA2-like acetyltransferase	NA	NA	NA	NA
SQH01060.1\|1448699_1449902_+\|transposase	transposase	A0A1X9I619	Streptococcus_phage	2.5e-213	94.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483418

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection