CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483397	Streptococcus uberis strain NCTC3858 genome assembly, chromosome: 1	1 crisprs	DEDDh,csa3,DinG,csm6,csn2,cas2,cas1,cas9,cas3	0	24	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483397_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483397_1

1111734-1112759

TypeII

Consensus_repeat	Method
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	CRISPRCasFinder
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	CRT
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	PILER-CR

15 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LS483397_1

>merge|LS483397|1|1111734-1112759|CRISPRCasFinder,CRT,PILER-CR
AATTTATAGTTACTTAAATCTTGAGAGTACAAAAACCCTTCACTTCCTCTTTAATCACGTGTCCTTGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACGAACTGAAATTGAAGAAGTTACACCACCAAGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACTTAACTTCTGACGAGGTTTACGACCTCTGCGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACGGCTACTCAAACTAAAAAATTAATTTCAATGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACTTGGTGTAGCTGTAACAGACACAGGTATATGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACGACCTCTTTGTCAAATAGCATCTCTCTGATGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACCAGATCGTGTTGGTACTGGTAGAAAACTAGGGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACGCAACAACTTATTACTATCTGATTCAGTTGGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACTATCTCCGACTTGAACAGCATTCTTATTAGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACTATCTCCGACTTGAACAGCATTCTTATTAGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACTCCAGCACCAGAAAGCGTCCAATCTCTATCGGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACCCTCTGGGGTTGGTGCGTCTCGCTCGATAAGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACCAAATTGTGAGATGACCGCTTGTTGATTGAGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACTGTATGGTTACCTAGCTATCCTTACAAGCGGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAACGCGGTAAGAAAAAAGAAGAAGATGGTGACGGTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC

>LS483397|1|1|1111734-1112759|CRISPRCasFinder
AATTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	CCTTCACTTCCTCTTTAATCACGTGTCCTT
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	GAACTGAAATTGAAGAAGTTACACCACCAA
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TTAACTTCTGACGAGGTTTACGACCTCTGC
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	GGCTACTCAAACTAAAAAATTAATTTCAAT
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TTGGTGTAGCTGTAACAGACACAGGTATAT
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	GACCTCTTTGTCAAATAGCATCTCTCTGAT
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	CAGATCGTGTTGGTACTGGTAGAAAACTAGG
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	GCAACAACTTATTACTATCTGATTCAGTTG
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TATCTCCGACTTGAACAGCATTCTTATTA
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TATCTCCGACTTGAACAGCATTCTTATTA
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TCCAGCACCAGAAAGCGTCCAATCTCTATCG
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	CCTCTGGGGTTGGTGCGTCTCGCTCGATAA
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	CAAATTGTGAGATGACCGCTTGTTGATTGA
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TGTATGGTTACCTAGCTATCCTTACAAGCG
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	GCGGTAAGAAAAAAGAAGAAGATGGTGACG
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC

>LS483397|1|1|1111734-1112759|CRT
AATTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	CCTTCACTTCCTCTTTAATCACGTGTCCTT
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	GAACTGAAATTGAAGAAGTTACACCACCAA
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TTAACTTCTGACGAGGTTTACGACCTCTGC
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	GGCTACTCAAACTAAAAAATTAATTTCAAT
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TTGGTGTAGCTGTAACAGACACAGGTATAT
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	GACCTCTTTGTCAAATAGCATCTCTCTGAT
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	CAGATCGTGTTGGTACTGGTAGAAAACTAGG
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	GCAACAACTTATTACTATCTGATTCAGTTG
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TATCTCCGACTTGAACAGCATTCTTATTA
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TATCTCCGACTTGAACAGCATTCTTATTA
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TCCAGCACCAGAAAGCGTCCAATCTCTATCG
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	CCTCTGGGGTTGGTGCGTCTCGCTCGATAA
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	CAAATTGTGAGATGACCGCTTGTTGATTGA
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	TGTATGGTTACCTAGCTATCCTTACAAGCG
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC	GCGGTAAGAAAAAAGAAGAAGATGGTGACG
GTTTTATAGTTACTTAAATCTTGAGAGTACAAAAAC

>LS483397|1|1|1111736-1112759|PILER-CR
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACCC	TTCACTTCCTCTTTAATCACGTGTCCTTGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACGA	ACTGAAATTGAAGAAGTTACACCACCAAGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACTT	AACTTCTGACGAGGTTTACGACCTCTGCGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACGG	CTACTCAAACTAAAAAATTAATTTCAATGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACTT	GGTGTAGCTGTAACAGACACAGGTATATGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACGA	CCTCTTTGTCAAATAGCATCTCTCTGATGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACCA	GATCGTGTTGGTACTGGTAGAAAACTAGGGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACGC	AACAACTTATTACTATCTGATTCAGTTGGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACTA	TCTCCGACTTGAACAGCATTCTTATTAGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACTA	TCTCCGACTTGAACAGCATTCTTATTAGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACTC	CAGCACCAGAAAGCGTCCAATCTCTATCGGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACCC	TCTGGGGTTGGTGCGTCTCGCTCGATAAGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACCA	AATTGTGAGATGACCGCTTGTTGATTGAGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACTG	TATGGTTACCTAGCTATCCTTACAAGCGGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAACGC	GGTAAGAAAAAAGAAGAAGATGGTGACGGT
TTTATAGTTACTTAAATCTTGAGAGTACAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483397.1\|SQG46456.1\|1120886_1122017_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
LS483397.1\|SQG46444.1\|1107229_1107883_-\|metal-dependent-phosphohydrolase	unknown	unknown	gnl\|CDD\|224336
LS483397.1\|SQG46449.1\|1112814_1113864_-\|CRISPR-associated-protein-Cas7	csn2	cd12217_csn2_CAS-II-A	gnl\|CDD\|213410
LS483397.1\|SQG46454.1\|1119365_1120130_-\|haloacid-dehalogenase	unknown	unknown	gnl\|CDD\|319832
LS483397.1\|SQG46451.1\|1114187_1115096_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
LS483397.1\|SQG46439.1\|1102439_1102835_-\|MerR-family-regulatory-protein	unknown	unknown	gnl\|CDD\|133384
LS483397.1\|SQG46448.1\|1110953_1111388_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
LS483397.1\|SQG46458.1\|1122756_1124109_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
LS483397.1\|SQG46446.1\|1108436_1110269_-\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LS483397.1\|SQG46441.1\|1104053_1104911_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|180766
LS483397.1\|SQG46457.1\|1122074_1122464_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483397.1\|SQG46447.1\|1110494_1110914_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483397.1\|SQG46455.1\|1120142_1120877_-\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
LS483397.1\|SQG46450.1\|1113860_1114169_-\|CRISPR-associated-CAS2-family-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LS483397.1\|SQG46445.1\|1107875_1108334_-\|methionine-sulfoxide-reductase-B	unknown	unknown	gnl\|CDD\|234692
LS483397.1\|SQG46452.1\|1115261_1118642_-\|CRISPR-associated-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
LS483397.1\|SQG46440.1\|1102844_1103885_-\|zinc-binding-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176247
LS483397.1\|SQG46453.1\|1118745_1119366_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226884
LS483397.1\|SQG46442.1\|1104992_1105847_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
LS483397.1\|SQG46443.1\|1105931_1107107_-\|suB1079-undefined-product-1051177:1052352-reverse-MW:44904	unknown	unknown	gnl\|CDD\|371412

Protein	Function_ID	Function_description	E-value
LS483397.1\|SQG46456.1\|1120886_1122017_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
LS483397.1\|SQG46444.1\|1107229_1107883_-\|metal-dependent-phosphohydrolase	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	1.17022e-31
LS483397.1\|SQG46449.1\|1112814_1113864_-\|CRISPR-associated-protein-Cas7	gnl\|CDD\|213410	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. This family of Csn2 proteins includes Stu0660, the proteins are larger than other (canonical) Csn2 proteins as they have an additional alpha-helical C-terminal domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.13705e-109
LS483397.1\|SQG46454.1\|1119365_1120130_-\|haloacid-dehalogenase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.28665e-129
LS483397.1\|SQG46451.1\|1114187_1115096_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.13847e-120
LS483397.1\|SQG46439.1\|1102439_1102835_-\|MerR-family-regulatory-protein	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	8.88011e-52
LS483397.1\|SQG46448.1\|1110953_1111388_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.41176e-76
LS483397.1\|SQG46458.1\|1122756_1124109_-\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
LS483397.1\|SQG46446.1\|1108436_1110269_-\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LS483397.1\|SQG46441.1\|1104053_1104911_-\|short-chain-dehydrogenase	gnl\|CDD\|180766	PRK06940, PRK06940, short chain dehydrogenase; Provisional.	8.72532e-167
LS483397.1\|SQG46453.1\|1118745_1119366_-\|membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	6.19019e-55
LS483397.1\|SQG46455.1\|1120142_1120877_-\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	2.47247e-86
LS483397.1\|SQG46450.1\|1113860_1114169_-\|CRISPR-associated-CAS2-family-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.49695e-28
LS483397.1\|SQG46445.1\|1107875_1108334_-\|methionine-sulfoxide-reductase-B	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.04838e-86
LS483397.1\|SQG46452.1\|1115261_1118642_-\|CRISPR-associated-protein	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	1.64968e-180
LS483397.1\|SQG46440.1\|1102844_1103885_-\|zinc-binding-alcohol-dehydrogenase	gnl\|CDD\|176247	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
LS483397.1\|SQG46442.1\|1104992_1105847_-\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	3.50312e-117
LS483397.1\|SQG46443.1\|1105931_1107107_-\|suB1079-undefined-product-1051177:1052352-reverse-MW:44904	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	1.62373e-75

>LS483397.1|SQG46448.1|1110953_1111388_-|nucleoside-diphosphate-kinase
MEKTFFMIKPDGVRRGLIGEVLQRIERRGFTLDALQLVTPSREHLDEHYHQLKDKAFYPGLIDYMMSGPILIGVISGNEVIESWRTMMGKTNPKDAAPGTIRGDFAQAPDENGEMMNVVHGSDSRDSAKREIELWLGHLTAENK
>LS483397.1|SQG46447.1|1110494_1110914_+|Uncharacterised-protein
MGERFGRLKVIKRTEKRAGNNEVVYICRCDCGKIIETYTSLLRQGRTRSCGCLHRDTRMKDLSVLNKHKKIVDGVQMDMFENRHNKNNTTGYKGVYKHHSGYIAGICVKGVQHRGVTRNTIEEAYADRLALERKYLPKP
>LS483397.1|SQG46446.1|1108436_1110269_-|GTP-binding-protein-LepA
MNSQELKNRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYILHLIDTPGHVDFTYEVSRSLAACEGAVLVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRQEIEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPSGDVDAPLQALIFDSVYDAYRGVILQVRIINGVVKPGDKIQMMSNGKSFDVTEVGIFTPKAIGRDFLATGDVGYIAASIKTVADTRVGDTVTLANNPASEPLDGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHINTTDGEMLAVSNPSEFPDPTKVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSQLVKMDILLNGDKVDALSFIVHREFAYERGKLIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDEDTKK
>LS483397.1|SQG46445.1|1107875_1108334_-|methionine-sulfoxide-reductase-B
MTENQEQLRQRIGDLAYEVTQKAATEPAFTGKYDQFFEKGIYVDVVSGEVLFSSEDKFQSGCGWPAFTKPIDNRMLTNHEDLSYGMRRIEVKSRQAQSHLGHVFNDGPREAGGLRYCINSAALRFIPYDAMETEGYGQYLALFQKKEDEIND
>LS483397.1|SQG46444.1|1107229_1107883_-|metal-dependent-phosphohydrolase
MTEKETLILKETQDWVHEKLARETSGHDWWHIVRVCHSAESIATEEGANTFICIMAALLHDMADEKLNEDPKKADLEVQEWLYAKDLTQEQVDHILDITRTISFKGGHGKALTDLEAKIVQDADRLDGIGAIGIARCMAYSGHKGRLIHDPNMTPRENMTQEEYRNGQDTAIMHFYEKLLTLKDRMNTTFGKKLAQQRHEFLLTYLEQFYEEWDGKR
>LS483397.1|SQG46443.1|1105931_1107107_-|suB1079-undefined-product-1051177:1052352-reverse-MW:44904
MPVLTDYIKHVQEESFADLPLNELDIVALNEIGYLSFDDLADVTIDASTTIKLKSIIKDSGEDSHKTVYNYLITQERLELFRAIQASKRFENVSLSHYVNEVNPEFEKQFAAMIFSIPEINHVQMVFRGTDDSLIGWKEDFKLTYMSEIPAHRSAIAYLSHYLEEHQDCNIIISGHSKGGNLALYAASFSLEKYQEKIKKVYLLDSPGLAEELLARESYQAIRDRLIVMRPQESVVGVMLYCDVKAKLIKSEAFGVLQHKTCNWQVNLKGKFETVSKPSHLSLTLDQTFKDWTKQLSKQELKLVCDSFFDAIISSGMTSLHVFTFDEKSFVTLFKIIASLRSIDQAKKVIMLKSLRQLIHDYTGYRKREVSEKIQETINNFLKRKSRKKLP
>LS483397.1|SQG46442.1|1104992_1105847_-|aldo/keto-reductase
MLETLKLNDGTRIPQLGYGTWMIKDEHAERLVSQALKLGYRHIDTAQAYGNEVGVGKGLFISGIPREEVFVTSKVAAEHKSYQEALASIDDSLLKLGLDYLDLMIIHSPQPWKEWRSREKNFDQGNLEAWRALEDAQKAGKVKSIGLSNFLIKDIQNIEKHGHVKPAVNQILSHIGNVPFDLVDYCKQKDILIEAYSPIAHGQALKDPTIKAIADKYQVSSAVLCIKYVLQLGMVALPKTENPEHMLANLKMNFTIQREDMERLNQLQFRDYGEDARFPVFSGK
>LS483397.1|SQG46441.1|1104053_1104911_-|short-chain-dehydrogenase
MKEGKVMTKVILVTGAGQLSMAIARRIGFGYKIIMGDKSISNAKAIANIMTEAGYDVEPFEMDLASRDAIKKMIAYGQSFGPIHHLINGAGVSPSQASIELVLKVDLYGTAILLEEVGKVIESGGTGITISSQSGFRMPALSAEQDRQLATADTESLLALDFLQVDQIKNSLHAYQLAKRANEKRVMGQSVIWAERGARLNAIAPGIIVTPLAVDEFNGPRGDFYKNMFAKSPAGRPGTADEVANLAELLMSDRASYITGSTFLIDGGATASYFYGPLQPEKTDM
>LS483397.1|SQG46440.1|1102844_1103885_-|zinc-binding-alcohol-dehydrogenase
MKAATFIEPGKMVITEREKPIIEAPTDAIIKIVRACVCGSDLWWYRGISQRETGSYAGHEAIGIVESVGEAVTNVQAGDFVIVPFTHGCGQCAACKAGFDGNCTNHVPGKKIGYQAEYLRYTNADWALVKVPGQPSDYSDDKLNSLLTLSDVMATGYHAAKTAEVKEGDTVVVMGDGAVGLCGVIAAKLLGAKRIIAMSRHKDRQELALEFGATDIIAERGDDAVEKVMALTNQEGVDAILECVGTEQSVDTAVKIARPGAIVGRVGIPQNPEMNTNNLFWKNIGLRGGIASVTTFDKEVLLEAVLSDKINPGKVFTKSFTLDDIQLAYEAMDKREAIKSLVLISD
>LS483397.1|SQG46439.1|1102439_1102835_-|MerR-family-regulatory-protein
MNIKKVSELTGVSADTIRYYERIGLIPPVTRNQSGVRNFSDRDISVLEFVRYFRGAGVSVESLIDYIGLVEQGDSTIGARLAILQEEREKLEERVSKLQAALDRLNHKIDNYQNKVVPREHQLFDQKESES
>LS483397.1|SQG46449.1|1112814_1113864_-|CRISPR-associated-protein-Cas7
MKIHLSHPYYDNLGINLGQFTQIIGQNQQLKYYLWQLLIWYFDGKKYSEEDLSIFNQVEPLITKEDDPIKRNHFQIISIADIRDLSEQMIFKKGTASFDFLKNQFNRLDVAYDLETMNNYLEEIANHINNQLEIYFDEMKYHVEPNILTAEQLLNKHFSPYFEFQGKNLSFEYLDNKMKVILFLKMLESNLSKKTENVLVIFKNLDDYLSHNHFIDICQFLNDLCQKYSHFFCMVFPSNESYLYVTKENTEYINIISNQIESFYEFDFMYERFCQSYPTNDYPNEDQFLKLLQRNGSYLFSEEIGHFSLSVRDMVTIKILNTLYHFNDEVTFEIPHVNSMEIKYLINND
>LS483397.1|SQG46450.1|1113860_1114169_-|CRISPR-associated-CAS2-family-protein
MRLLCFFDLPMETNQQKRIYRNFRKELISNGFEMLQFSVYFRTCPNRSFASKFYKRLKVSNLPAGNVRLLAVTEKQFSEMVLIVGGRTRQEEVISDNKLVII
>LS483397.1|SQG46451.1|1114187_1115096_-|CRISPR-associated-endonuclease-Cas1
MTWRIIHINQSEKMHLKLDNLVVKKLGEEFTIPLSDISIVVAEGGDTVVTLRLLSAFSKYNIILVVCDNNHLPTGIFHAQNGHFHAFKRMKNQMAWSQIQKDKMWQIVTYFKINNQEDVLAMFEKDIKAIQLLSDYKNNIELGDKTNREGHAAKVYFNELFGKNFTRVTQEECDPINAGLNYGYAILRAQFARIVAGYGLNPMIGIFHRNEFNQFNLVDDLMEPFRQIVDIWVYYHLRDKEFLTYEYRLQLINLLNLKIQYGKEKCTVTNAIDRYVNGFVKCIEEKNNNKFFCPIVSSIELE
>LS483397.1|SQG46452.1|1115261_1118642_-|CRISPR-associated-protein
MTNGMILGLDIGVASVGVGIIEADSGKIVHASSRIFPSANADNNVDRRKFRGSRRLLRRKKHRVKRLQDLFDKYDIVTNFDNLNLNPYELRVKGLNEPLSNEELFASLRNITKHRGISYLDDGEDDSSGNGTEYAKAIELNQQLLKEKTPGQIQFDRLNQYGQLRGNFDIVDENGEIHHVINVFSTSSYRKEAEQILKKQSETNTSISTDFINDFIQLLISKRKYYHGPGNPKSRTDYGRYRTDGTDLDNIFDVLIGKCSFYPEEYRASKTSYTAQEFNFLNDLNNLTLPTETGKLSEQQKIDLVNWAKETKILGPKKLLQEIAKRNNCKFEDIRGYRLDNKDNPDMHVFDVYRKMNFDLETISVKDLSVDSLNQLARILTLNTEREGIEEAIKKLMPNQFTEKQMLELIAFRKSNSSIFGKGWHSLSIKLMKELIPELYHTSDEQMTILNRFGKFKLTKLDSKRTNYIDENSVTDEIYNPVVAKSVRQAIKIINASIKKWGDFDKIVIEMPRDKNEEEERKRIADGQKVNAKEKEQAEKHAAKLFNGKEELPSEVFHGYKELALRIRLWYQQDQKCLYSGKEITISDLIYNRELFEIDHILPLSLSFDDSLSNKVLVYCWANQEKGQRTPFQALDSMKSAWSYREFKNAILHNSKISRKKRDYFLTEQDISKIEVKQKFIERNLVDTRYASRTVLNVLQQSLKNLEKETKVSVVRGQFTSQLRRKWHIDKTRDTYHHHAVDALIIAASAKLRYWKKQGDILFENYLINRHVDRVTGEIQSDDSYKEEVFTPPYDGFVQTISNPGFEDEILFSYQVDSKVNRKISDATIYATRSAKLEKDKKEQTYVLGKIKDIYSQTGFENFLKIYNKDKSKFLIYQKDPETWEKIIEPILKNYREFDNKGKDIVNPFEKYRNDNGPICKYSRKGNGPEIKQFKYYDTVLGKYIEITPESSRNIVALRSLNPWRTDVYFNEKTLKYEFLGLKYSDLNIQNKEEYGISEENYQKIKKEEGVSEESIFKFTLYRNDLIIIKDLSKGKSQIFRFWSRTGKVNEKHKLELKPYNKSSFEKGESLEVIRNLYPSSNQFQEKLNKSDLSIYKLKTDILGNKFISKNENLFPKLIYKKIKRK
>LS483397.1|SQG46453.1|1118745_1119366_-|membrane-protein
MADKIRLLLLWLCLLAFSVLVTIYGAWLFYSIEVDLLKINHVVYMTKSSILYNFNGLMDYLTNPFRTQLTFASFAASKEGLAHFKDVKGLFHLTQVIFILSLYPSCRFLKTIRKAKAWQLYRHNFLLALLLPLIIALFAYLIGFDHFFILFHHILFPGKTNWSFDPLTDPIIWILPETFFMHCFIGFLVVYEAVFGILLFKSKINK
>LS483397.1|SQG46454.1|1119365_1120130_-|haloacid-dehalogenase
MTYKGYLIDLDGTIYKGRERIPAGERFIQRLQEQEIPYLLVTNNTTRTPQMVQDMLAQQFNIQTPLETIYTATMATVDYMKDMDRGQTVYVIGETGLKSAISEAGYIEDKENPAYVVVGLDSQVTYDMLATATLAIAKGALFIGTNPDLNIPTERGLMPGAGSLVALLEAATRVKPVFIGKPNAIIMNKALDILQVKRSEAIMVGDNYLTDIMAGIQNDIASLLVTTGFTKAEEVPNLPIQPDYVVASLDEWDI
>LS483397.1|SQG46455.1|1120142_1120877_-|acyl-ACP-thioesterase
MGLVYQETFTMPFDLCDVKQDAKLPLLLAYCLTVSGRQSAKLGRSDDYVLENYNLVWIITDYEVSIKRLPKFNETITIETEAISYNKFFCYRQFHIYDQEGNLLMDILTYFALMAPDTRKVVSIPEDLVQPYQSECVKKMRRAPKMRELENPQVKTYHVRYFDIDMNGHVNNSKYLDWMYDVLSYDFLRHHRPRQLQLKYIKEVAPGDQDIASAFQLEGLTSYHHISSQGQINAQAIIDWEPID
>LS483397.1|SQG46456.1|1120886_1122017_-|coproporphyrinogen-III-oxidase
MINKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDDYLRALIQEFRSYEIKSLKTLYIGGGTPTAITASQLDYLLTELVRDLDLSKLEEFTIEANPGDLDQDKIQVLKKSAVNRISLGVQTFNDKHLKQIGRSHNEAQIYTTIDSLKAAGFHNISIDLIYALPGQTLEQVKENVAKALALDIPHLSLYSLILEHHTVFMNKMRRGKLNLPTEDLEAEMFEYIISEMEANGFEHYEISNFSKPGYYSQHNLMYWDNDEYYGCGAGASGYLNGVRYRNRVPIQHYLKAVSEGNARLTEEVLTQDEMMEEELFLGLRKKSGVSVARFEEKFGLSFDQRYGHIVQELIGQGLLVNDPKTVRMTKKGLFLGDSVAEKFILD
>LS483397.1|SQG46457.1|1122074_1122464_-|Uncharacterised-protein
MIKDWNYGGPDSSPIYYASPWIFPIKGNQKNWFRLVRNGIVIAIFKLEIISHTIMVHLFLEPGNDQLFTMDLIKGIEGKAQEIAAGKDLVFQLHVSKVEAKELLLEAGFELIPKLISEPTWIHLAKIGI
>LS483397.1|SQG46458.1|1122756_1124109_-|phosphoglucosamine-mutase
MGKYFGTDGVRGEANVELTPELAFKLGRFGGYVLSQHETGTPRVFVARDTRISGEMLESALVAGLLSVGIEVYKLGVLATPGVSYLVRTENASAGVMISASHNPALDNGIKFFGSDGFKLADDQELEIEALLDAEEDTLPRPSAEGLGTLVDYPEGLRKYEKFLVSTGVNLEGMKVALDTANGAASVSARDVFLDLQADISVIGEQPNGLNINDGIGSTHPEKLQELVKETGSAVGLAFDGDSDRLIAVDENGDIVDGDKIMFIIGKYLSEKGLLAQNTIVTTVMSNLGFHKALDQHGINKAVTAVGDRYVVEEIRQSNYNLGGEQSGHVIIMDYNTTGDGQLTAIQLTKVMKETGMSLSELAAQVTIYPQKLVNIRVDNSMKHKAMEVPAIAAIIEKMEAEMEGNGRILVRPSGTEPLLRVMAEAPTDEEVDYYVDTIADVVRTEIGIA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	MK448995	Streptococcus phage Javan626, complete genome	26739-26768	0	1.0
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	MK448995	Streptococcus phage Javan626, complete genome	26739-26768	0	1.0
LS483397_1	1.3\|1111902\|30\|LS483397\|CRISPRCasFinder,CRT	1111902-1111931	30	MK448824	Streptococcus phage Javan637, complete genome	532-561	1	0.967
LS483397_1	1.3\|1111902\|30\|LS483397\|CRISPRCasFinder,CRT	1111902-1111931	30	MK449002	Streptococcus phage Javan642, complete genome	532-561	1	0.967
LS483397_1	1.3\|1111902\|30\|LS483397\|CRISPRCasFinder,CRT	1111902-1111931	30	MK449003	Streptococcus phage Javan648, complete genome	532-561	1	0.967
LS483397_1	1.13\|1112562\|30\|LS483397\|CRISPRCasFinder,CRT	1112562-1112591	30	MK448995	Streptococcus phage Javan626, complete genome	39817-39846	1	0.967
LS483397_1	1.18\|1111904\|30\|LS483397\|PILER-CR	1111904-1111933	30	MK448824	Streptococcus phage Javan637, complete genome	532-561	1	0.967
LS483397_1	1.18\|1111904\|30\|LS483397\|PILER-CR	1111904-1111933	30	MK449002	Streptococcus phage Javan642, complete genome	532-561	1	0.967
LS483397_1	1.18\|1111904\|30\|LS483397\|PILER-CR	1111904-1111933	30	MK449003	Streptococcus phage Javan648, complete genome	532-561	1	0.967
LS483397_1	1.28\|1112564\|30\|LS483397\|PILER-CR	1112564-1112593	30	MK448995	Streptococcus phage Javan626, complete genome	39817-39846	1	0.967
LS483397_1	1.6\|1112100\|30\|LS483397\|CRISPRCasFinder,CRT	1112100-1112129	30	MK448747	Streptococcus phage Javan385, complete genome	9104-9133	2	0.933
LS483397_1	1.12\|1112496\|30\|LS483397\|CRISPRCasFinder,CRT	1112496-1112525	30	MK448823	Streptococcus phage Javan633, complete genome	31085-31114	2	0.933
LS483397_1	1.12\|1112496\|30\|LS483397\|CRISPRCasFinder,CRT	1112496-1112525	30	MK448996	Streptococcus phage Javan628, complete genome	31085-31114	2	0.933
LS483397_1	1.21\|1112102\|30\|LS483397\|PILER-CR	1112102-1112131	30	MK448747	Streptococcus phage Javan385, complete genome	9104-9133	2	0.933
LS483397_1	1.27\|1112498\|30\|LS483397\|PILER-CR	1112498-1112527	30	MK448823	Streptococcus phage Javan633, complete genome	31085-31114	2	0.933
LS483397_1	1.27\|1112498\|30\|LS483397\|PILER-CR	1112498-1112527	30	MK448996	Streptococcus phage Javan628, complete genome	31085-31114	2	0.933
LS483397_1	1.7\|1112166\|31\|LS483397\|CRISPRCasFinder,CRT	1112166-1112196	31	MK448823	Streptococcus phage Javan633, complete genome	13913-13943	3	0.903
LS483397_1	1.7\|1112166\|31\|LS483397\|CRISPRCasFinder,CRT	1112166-1112196	31	MK448996	Streptococcus phage Javan628, complete genome	13913-13943	3	0.903
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	MK448761	Streptococcus phage Javan445, complete genome	27360-27389	3	0.9
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	MK448760	Streptococcus phage Javan443, complete genome	27360-27389	3	0.9
LS483397_1	1.22\|1112168\|31\|LS483397\|PILER-CR	1112168-1112198	31	MK448823	Streptococcus phage Javan633, complete genome	13913-13943	3	0.903
LS483397_1	1.22\|1112168\|31\|LS483397\|PILER-CR	1112168-1112198	31	MK448996	Streptococcus phage Javan628, complete genome	13913-13943	3	0.903
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	MK448761	Streptococcus phage Javan445, complete genome	27360-27389	3	0.9
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	MK448760	Streptococcus phage Javan443, complete genome	27360-27389	3	0.9
LS483397_1	1.4\|1111968\|30\|LS483397\|CRISPRCasFinder,CRT	1111968-1111997	30	NC_014123	'Rehmannia glutinosa' phytoplasma plasmid pPARG1, complete sequence	2199-2228	5	0.833
LS483397_1	1.9\|1112299\|29\|LS483397\|CRISPRCasFinder,CRT	1112299-1112327	29	MK448754	Streptococcus phage Javan411, complete genome	21457-21485	5	0.828
LS483397_1	1.9\|1112299\|29\|LS483397\|CRISPRCasFinder,CRT	1112299-1112327	29	MK448929	Streptococcus phage Javan400, complete genome	21457-21485	5	0.828
LS483397_1	1.10\|1112364\|29\|LS483397\|CRISPRCasFinder,CRT	1112364-1112392	29	MK448754	Streptococcus phage Javan411, complete genome	21457-21485	5	0.828
LS483397_1	1.10\|1112364\|29\|LS483397\|CRISPRCasFinder,CRT	1112364-1112392	29	MK448929	Streptococcus phage Javan400, complete genome	21457-21485	5	0.828
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	NZ_CP049358	Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence	79016-79045	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	NZ_CP031159	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence	65188-65217	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	KX349297	Cyanophage S-RIM44 isolate W2_10_0709, complete genome	142811-142840	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	KX349293	Cyanophage S-RIM44 isolate Np_20_0711, complete genome	148347-148376	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	MN694288	Marine virus AFVG_250M340, complete genome	23250-23279	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	KX349296	Cyanophage S-RIM44 isolate Sn_13_0910, complete genome	148105-148134	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	NC_047734	Cyanophage S-RIM44 isolate Np_42_0711, complete genome	148060-148089	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	MN694631	Marine virus AFVG_250M342, complete genome	17410-17439	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	KU594607	Cyanophage S-RIM44 isolate W2_07_0710, complete genome	142532-142561	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	MW147367	Synechococcus phage S-H9-2, complete genome	81823-81852	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	KX349291	Cyanophage S-RIM44 isolate ES_42_0910, complete genome	148105-148134	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	NC_015288	Prochlorococcus phage Syn1, complete genome	140729-140758	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	KX349295	Cyanophage S-RIM44 isolate Sn_08_0709, complete genome	142534-142563	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	KX349292	Cyanophage S-RIM44 isolate Np_05_0604, complete genome	142534-142563	5	0.833
LS483397_1	1.19\|1111970\|30\|LS483397\|PILER-CR	1111970-1111999	30	NC_014123	'Rehmannia glutinosa' phytoplasma plasmid pPARG1, complete sequence	2199-2228	5	0.833
LS483397_1	1.24\|1112301\|29\|LS483397\|PILER-CR	1112301-1112329	29	MK448754	Streptococcus phage Javan411, complete genome	21457-21485	5	0.828
LS483397_1	1.24\|1112301\|29\|LS483397\|PILER-CR	1112301-1112329	29	MK448929	Streptococcus phage Javan400, complete genome	21457-21485	5	0.828
LS483397_1	1.25\|1112366\|29\|LS483397\|PILER-CR	1112366-1112394	29	MK448754	Streptococcus phage Javan411, complete genome	21457-21485	5	0.828
LS483397_1	1.25\|1112366\|29\|LS483397\|PILER-CR	1112366-1112394	29	MK448929	Streptococcus phage Javan400, complete genome	21457-21485	5	0.828
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	NZ_CP049358	Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence	79016-79045	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	NZ_CP031159	Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence	65188-65217	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	KX349297	Cyanophage S-RIM44 isolate W2_10_0709, complete genome	142811-142840	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	KX349293	Cyanophage S-RIM44 isolate Np_20_0711, complete genome	148347-148376	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	MN694288	Marine virus AFVG_250M340, complete genome	23250-23279	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	KX349296	Cyanophage S-RIM44 isolate Sn_13_0910, complete genome	148105-148134	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	NC_047734	Cyanophage S-RIM44 isolate Np_42_0711, complete genome	148060-148089	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	MN694631	Marine virus AFVG_250M342, complete genome	17410-17439	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	KU594607	Cyanophage S-RIM44 isolate W2_07_0710, complete genome	142532-142561	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	MW147367	Synechococcus phage S-H9-2, complete genome	81823-81852	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	KX349291	Cyanophage S-RIM44 isolate ES_42_0910, complete genome	148105-148134	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	NC_015288	Prochlorococcus phage Syn1, complete genome	140729-140758	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	KX349295	Cyanophage S-RIM44 isolate Sn_08_0709, complete genome	142534-142563	5	0.833
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	KX349292	Cyanophage S-RIM44 isolate Np_05_0604, complete genome	142534-142563	5	0.833
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	KU594606	Cyanophage S-RIM32 isolate RW_108_0702, complete genome	144447-144476	6	0.8
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	KU594606	Cyanophage S-RIM32 isolate RW_108_0702, complete genome	144447-144476	6	0.8
LS483397_1	1.4\|1111968\|30\|LS483397\|CRISPRCasFinder,CRT	1111968-1111997	30	NZ_LR215005	Mycoplasma conjunctivae strain NCTC10147 plasmid 9	119294-119323	7	0.767
LS483397_1	1.6\|1112100\|30\|LS483397\|CRISPRCasFinder,CRT	1112100-1112129	30	NZ_CP043609	Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence	17311-17340	7	0.767
LS483397_1	1.8\|1112233\|30\|LS483397\|CRISPRCasFinder,CRT	1112233-1112262	30	NC_019777	Cyanobacterium aponinum PCC 10605 plasmid pCYAN10605.01, complete sequence	23952-23981	7	0.767
LS483397_1	1.19\|1111970\|30\|LS483397\|PILER-CR	1111970-1111999	30	NZ_LR215005	Mycoplasma conjunctivae strain NCTC10147 plasmid 9	119294-119323	7	0.767
LS483397_1	1.21\|1112102\|30\|LS483397\|PILER-CR	1112102-1112131	30	NZ_CP043609	Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence	17311-17340	7	0.767
LS483397_1	1.23\|1112235\|30\|LS483397\|PILER-CR	1112235-1112264	30	NC_019777	Cyanobacterium aponinum PCC 10605 plasmid pCYAN10605.01, complete sequence	23952-23981	7	0.767
LS483397_1	1.2\|1111836\|30\|LS483397\|CRISPRCasFinder,CRT	1111836-1111865	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	306486-306515	8	0.733
LS483397_1	1.3\|1111902\|30\|LS483397\|CRISPRCasFinder,CRT	1111902-1111931	30	JX094500	Cronobacter phage CR5, complete genome	87385-87414	8	0.733
LS483397_1	1.3\|1111902\|30\|LS483397\|CRISPRCasFinder,CRT	1111902-1111931	30	MK448430	Streptococcus satellite phage Javan324, complete genome	6030-6059	8	0.733
LS483397_1	1.3\|1111902\|30\|LS483397\|CRISPRCasFinder,CRT	1111902-1111931	30	MK448449	Streptococcus satellite phage Javan356, complete genome	5089-5118	8	0.733
LS483397_1	1.3\|1111902\|30\|LS483397\|CRISPRCasFinder,CRT	1111902-1111931	30	MK448434	Streptococcus satellite phage Javan329, complete genome	6566-6595	8	0.733
LS483397_1	1.4\|1111968\|30\|LS483397\|CRISPRCasFinder,CRT	1111968-1111997	30	NZ_CP029394	Acinetobacter defluvii strain WCHA30 plasmid p6_010030, complete sequence	988-1017	8	0.733
LS483397_1	1.5\|1112034\|30\|LS483397\|CRISPRCasFinder,CRT	1112034-1112063	30	MN399336	Edwardsiella phage vB_EtaM_ET-ABTNL-9, complete genome	65578-65607	8	0.733
LS483397_1	1.8\|1112233\|30\|LS483397\|CRISPRCasFinder,CRT	1112233-1112262	30	NZ_CP024772	Bacillus thuringiensis LM1212 plasmid pLM1, complete sequence	247534-247563	8	0.733
LS483397_1	1.8\|1112233\|30\|LS483397\|CRISPRCasFinder,CRT	1112233-1112262	30	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	18683-18712	8	0.733
LS483397_1	1.8\|1112233\|30\|LS483397\|CRISPRCasFinder,CRT	1112233-1112262	30	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	152661-152690	8	0.733
LS483397_1	1.8\|1112233\|30\|LS483397\|CRISPRCasFinder,CRT	1112233-1112262	30	NZ_CP015251	Bacillus thuringiensis Bt18247 plasmid p174778, complete sequence	164816-164845	8	0.733
LS483397_1	1.8\|1112233\|30\|LS483397\|CRISPRCasFinder,CRT	1112233-1112262	30	NZ_CP015253	Bacillus thuringiensis Bt18247 plasmid p113275, complete sequence	65760-65789	8	0.733
LS483397_1	1.8\|1112233\|30\|LS483397\|CRISPRCasFinder,CRT	1112233-1112262	30	NZ_CP015255	Bacillus thuringiensis Bt18247 plasmid p15092, complete sequence	5156-5185	8	0.733
LS483397_1	1.8\|1112233\|30\|LS483397\|CRISPRCasFinder,CRT	1112233-1112262	30	MN692959	Marine virus AFVG_117M52, complete genome	15773-15802	8	0.733
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	NZ_LR134421	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12	173-202	8	0.733
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	MN694283	Marine virus AFVG_250M295, complete genome	11776-11805	8	0.733
LS483397_1	1.17\|1111838\|30\|LS483397\|PILER-CR	1111838-1111867	30	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	306486-306515	8	0.733
LS483397_1	1.18\|1111904\|30\|LS483397\|PILER-CR	1111904-1111933	30	JX094500	Cronobacter phage CR5, complete genome	87385-87414	8	0.733
LS483397_1	1.18\|1111904\|30\|LS483397\|PILER-CR	1111904-1111933	30	MK448430	Streptococcus satellite phage Javan324, complete genome	6030-6059	8	0.733
LS483397_1	1.18\|1111904\|30\|LS483397\|PILER-CR	1111904-1111933	30	MK448449	Streptococcus satellite phage Javan356, complete genome	5089-5118	8	0.733
LS483397_1	1.18\|1111904\|30\|LS483397\|PILER-CR	1111904-1111933	30	MK448434	Streptococcus satellite phage Javan329, complete genome	6566-6595	8	0.733
LS483397_1	1.19\|1111970\|30\|LS483397\|PILER-CR	1111970-1111999	30	NZ_CP029394	Acinetobacter defluvii strain WCHA30 plasmid p6_010030, complete sequence	988-1017	8	0.733
LS483397_1	1.20\|1112036\|30\|LS483397\|PILER-CR	1112036-1112065	30	MN399336	Edwardsiella phage vB_EtaM_ET-ABTNL-9, complete genome	65578-65607	8	0.733
LS483397_1	1.23\|1112235\|30\|LS483397\|PILER-CR	1112235-1112264	30	NZ_CP024772	Bacillus thuringiensis LM1212 plasmid pLM1, complete sequence	247534-247563	8	0.733
LS483397_1	1.23\|1112235\|30\|LS483397\|PILER-CR	1112235-1112264	30	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	18683-18712	8	0.733
LS483397_1	1.23\|1112235\|30\|LS483397\|PILER-CR	1112235-1112264	30	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	152661-152690	8	0.733
LS483397_1	1.23\|1112235\|30\|LS483397\|PILER-CR	1112235-1112264	30	NZ_CP015251	Bacillus thuringiensis Bt18247 plasmid p174778, complete sequence	164816-164845	8	0.733
LS483397_1	1.23\|1112235\|30\|LS483397\|PILER-CR	1112235-1112264	30	NZ_CP015253	Bacillus thuringiensis Bt18247 plasmid p113275, complete sequence	65760-65789	8	0.733
LS483397_1	1.23\|1112235\|30\|LS483397\|PILER-CR	1112235-1112264	30	NZ_CP015255	Bacillus thuringiensis Bt18247 plasmid p15092, complete sequence	5156-5185	8	0.733
LS483397_1	1.23\|1112235\|30\|LS483397\|PILER-CR	1112235-1112264	30	MN692959	Marine virus AFVG_117M52, complete genome	15773-15802	8	0.733
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	NZ_LR134421	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12	173-202	8	0.733
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	MN694283	Marine virus AFVG_250M295, complete genome	11776-11805	8	0.733
LS483397_1	1.2\|1111836\|30\|LS483397\|CRISPRCasFinder,CRT	1111836-1111865	30	MN693772	Marine virus AFVG_250M408, complete genome	27366-27395	9	0.7
LS483397_1	1.4\|1111968\|30\|LS483397\|CRISPRCasFinder,CRT	1111968-1111997	30	NZ_KT780704	Staphylococcus aureus subsp. aureus RN4220 plasmid pRM27, complete sequence	48148-48177	9	0.7
LS483397_1	1.4\|1111968\|30\|LS483397\|CRISPRCasFinder,CRT	1111968-1111997	30	NZ_CP024400	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-2, complete sequence	18249-18278	9	0.7
LS483397_1	1.6\|1112100\|30\|LS483397\|CRISPRCasFinder,CRT	1112100-1112129	30	HQ634190	Cyanophage Syn2 genomic sequence	41317-41346	9	0.7
LS483397_1	1.6\|1112100\|30\|LS483397\|CRISPRCasFinder,CRT	1112100-1112129	30	NC_015286	Synechococcus phage Syn19, complete genome	107209-107238	9	0.7
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	NC_029119	Staphylococcus phage SPbeta-like, complete genome	39699-39728	9	0.7
LS483397_1	1.17\|1111838\|30\|LS483397\|PILER-CR	1111838-1111867	30	MN693772	Marine virus AFVG_250M408, complete genome	27366-27395	9	0.7
LS483397_1	1.19\|1111970\|30\|LS483397\|PILER-CR	1111970-1111999	30	NZ_KT780704	Staphylococcus aureus subsp. aureus RN4220 plasmid pRM27, complete sequence	48148-48177	9	0.7
LS483397_1	1.19\|1111970\|30\|LS483397\|PILER-CR	1111970-1111999	30	NZ_CP024400	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-2, complete sequence	18249-18278	9	0.7
LS483397_1	1.21\|1112102\|30\|LS483397\|PILER-CR	1112102-1112131	30	HQ634190	Cyanophage Syn2 genomic sequence	41317-41346	9	0.7
LS483397_1	1.21\|1112102\|30\|LS483397\|PILER-CR	1112102-1112131	30	NC_015286	Synechococcus phage Syn19, complete genome	107209-107238	9	0.7
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	NC_029119	Staphylococcus phage SPbeta-like, complete genome	39699-39728	9	0.7
LS483397_1	1.4\|1111968\|30\|LS483397\|CRISPRCasFinder,CRT	1111968-1111997	30	AP013737	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C40-MedDCM-OCT-S36-C23, * SEQUENCING IN PROGRESS *	7159-7188	10	0.667
LS483397_1	1.4\|1111968\|30\|LS483397\|CRISPRCasFinder,CRT	1111968-1111997	30	AP013738	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C40-MedDCM-OCT-S40-C68, * SEQUENCING IN PROGRESS *	31860-31889	10	0.667
LS483397_1	1.4\|1111968\|30\|LS483397\|CRISPRCasFinder,CRT	1111968-1111997	30	AP013445	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C40-MedDCM-OCT-S28-C16	15086-15115	10	0.667
LS483397_1	1.19\|1111970\|30\|LS483397\|PILER-CR	1111970-1111999	30	AP013737	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C40-MedDCM-OCT-S36-C23, * SEQUENCING IN PROGRESS *	7159-7188	10	0.667
LS483397_1	1.19\|1111970\|30\|LS483397\|PILER-CR	1111970-1111999	30	AP013738	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C40-MedDCM-OCT-S40-C68, * SEQUENCING IN PROGRESS *	31860-31889	10	0.667
LS483397_1	1.19\|1111970\|30\|LS483397\|PILER-CR	1111970-1111999	30	AP013445	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C40-MedDCM-OCT-S28-C16	15086-15115	10	0.667
LS483397_1	1.15\|1112694\|30\|LS483397\|CRISPRCasFinder,CRT	1112694-1112723	30	MT773557	Myoviridae sp. isolate BML_S_1 genomic sequence	12635-12664	11	0.633
LS483397_1	1.30\|1112696\|30\|LS483397\|PILER-CR	1112696-1112725	30	MT773557	Myoviridae sp. isolate BML_S_1 genomic sequence	12635-12664	11	0.633

1. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to MK448995 (Streptococcus phage Javan626, complete genome) position: , mismatch: 0, identity: 1.0

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
gcggtaagaaaaaagaagaagatggtgacg	Protospacer
******************************

2. spacer 1.30|1112696|30|LS483397|PILER-CR matches to MK448995 (Streptococcus phage Javan626, complete genome) position: , mismatch: 0, identity: 1.0

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
gcggtaagaaaaaagaagaagatggtgacg	Protospacer
******************************

3. spacer 1.3|1111902|30|LS483397|CRISPRCasFinder,CRT matches to MK448824 (Streptococcus phage Javan637, complete genome) position: , mismatch: 1, identity: 0.967

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
ttaacttctaacgaggtttacgacctctgc	Protospacer
*********.********************

4. spacer 1.3|1111902|30|LS483397|CRISPRCasFinder,CRT matches to MK449002 (Streptococcus phage Javan642, complete genome) position: , mismatch: 1, identity: 0.967

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
ttaacttctaacgaggtttacgacctctgc	Protospacer
*********.********************

5. spacer 1.3|1111902|30|LS483397|CRISPRCasFinder,CRT matches to MK449003 (Streptococcus phage Javan648, complete genome) position: , mismatch: 1, identity: 0.967

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
ttaacttctaacgaggtttacgacctctgc	Protospacer
*********.********************

6. spacer 1.13|1112562|30|LS483397|CRISPRCasFinder,CRT matches to MK448995 (Streptococcus phage Javan626, complete genome) position: , mismatch: 1, identity: 0.967

caaattgtgagatgaccgcttgttgattga	CRISPR spacer
caaattgtgagatgaccgcttgttgattta	Protospacer
**************************** *

7. spacer 1.18|1111904|30|LS483397|PILER-CR matches to MK448824 (Streptococcus phage Javan637, complete genome) position: , mismatch: 1, identity: 0.967

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
ttaacttctaacgaggtttacgacctctgc	Protospacer
*********.********************

8. spacer 1.18|1111904|30|LS483397|PILER-CR matches to MK449002 (Streptococcus phage Javan642, complete genome) position: , mismatch: 1, identity: 0.967

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
ttaacttctaacgaggtttacgacctctgc	Protospacer
*********.********************

9. spacer 1.18|1111904|30|LS483397|PILER-CR matches to MK449003 (Streptococcus phage Javan648, complete genome) position: , mismatch: 1, identity: 0.967

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
ttaacttctaacgaggtttacgacctctgc	Protospacer
*********.********************

10. spacer 1.28|1112564|30|LS483397|PILER-CR matches to MK448995 (Streptococcus phage Javan626, complete genome) position: , mismatch: 1, identity: 0.967

caaattgtgagatgaccgcttgttgattga	CRISPR spacer
caaattgtgagatgaccgcttgttgattta	Protospacer
**************************** *

11. spacer 1.6|1112100|30|LS483397|CRISPRCasFinder,CRT matches to MK448747 (Streptococcus phage Javan385, complete genome) position: , mismatch: 2, identity: 0.933

gacctctttgtcaaatagcatctctctgat	CRISPR spacer
gacatctttgtcaaatagcatgtctctgat	Protospacer
*** ***************** ********

12. spacer 1.12|1112496|30|LS483397|CRISPRCasFinder,CRT matches to MK448823 (Streptococcus phage Javan633, complete genome) position: , mismatch: 2, identity: 0.933

cctctggggttggtgcgtctcgctcgataa	CRISPR spacer
cttctggggtaggtgcgtctcgctcgataa	Protospacer
*.******** *******************

13. spacer 1.12|1112496|30|LS483397|CRISPRCasFinder,CRT matches to MK448996 (Streptococcus phage Javan628, complete genome) position: , mismatch: 2, identity: 0.933

cctctggggttggtgcgtctcgctcgataa	CRISPR spacer
cttctggggtaggtgcgtctcgctcgataa	Protospacer
*.******** *******************

14. spacer 1.21|1112102|30|LS483397|PILER-CR matches to MK448747 (Streptococcus phage Javan385, complete genome) position: , mismatch: 2, identity: 0.933

gacctctttgtcaaatagcatctctctgat	CRISPR spacer
gacatctttgtcaaatagcatgtctctgat	Protospacer
*** ***************** ********

15. spacer 1.27|1112498|30|LS483397|PILER-CR matches to MK448823 (Streptococcus phage Javan633, complete genome) position: , mismatch: 2, identity: 0.933

cctctggggttggtgcgtctcgctcgataa	CRISPR spacer
cttctggggtaggtgcgtctcgctcgataa	Protospacer
*.******** *******************

16. spacer 1.27|1112498|30|LS483397|PILER-CR matches to MK448996 (Streptococcus phage Javan628, complete genome) position: , mismatch: 2, identity: 0.933

cctctggggttggtgcgtctcgctcgataa	CRISPR spacer
cttctggggtaggtgcgtctcgctcgataa	Protospacer
*.******** *******************

17. spacer 1.7|1112166|31|LS483397|CRISPRCasFinder,CRT matches to MK448823 (Streptococcus phage Javan633, complete genome) position: , mismatch: 3, identity: 0.903

cagatcgtgttggtactggtagaaaactagg	CRISPR spacer
cagatcgtgctggtactggtaaaaaactaag	Protospacer
*********.***********.*******.*

18. spacer 1.7|1112166|31|LS483397|CRISPRCasFinder,CRT matches to MK448996 (Streptococcus phage Javan628, complete genome) position: , mismatch: 3, identity: 0.903

cagatcgtgttggtactggtagaaaactagg	CRISPR spacer
cagatcgtgctggtactggtaaaaaactaag	Protospacer
*********.***********.*******.*

19. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to MK448761 (Streptococcus phage Javan445, complete genome) position: , mismatch: 3, identity: 0.9

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
gtggcaagaaaaaagaagaagacggtgacg	Protospacer
*.**.*****************.*******

20. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to MK448760 (Streptococcus phage Javan443, complete genome) position: , mismatch: 3, identity: 0.9

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
gtggcaagaaaaaagaagaagacggtgacg	Protospacer
*.**.*****************.*******

21. spacer 1.22|1112168|31|LS483397|PILER-CR matches to MK448823 (Streptococcus phage Javan633, complete genome) position: , mismatch: 3, identity: 0.903

cagatcgtgttggtactggtagaaaactagg	CRISPR spacer
cagatcgtgctggtactggtaaaaaactaag	Protospacer
*********.***********.*******.*

22. spacer 1.22|1112168|31|LS483397|PILER-CR matches to MK448996 (Streptococcus phage Javan628, complete genome) position: , mismatch: 3, identity: 0.903

cagatcgtgttggtactggtagaaaactagg	CRISPR spacer
cagatcgtgctggtactggtaaaaaactaag	Protospacer
*********.***********.*******.*

23. spacer 1.30|1112696|30|LS483397|PILER-CR matches to MK448761 (Streptococcus phage Javan445, complete genome) position: , mismatch: 3, identity: 0.9

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
gtggcaagaaaaaagaagaagacggtgacg	Protospacer
*.**.*****************.*******

24. spacer 1.30|1112696|30|LS483397|PILER-CR matches to MK448760 (Streptococcus phage Javan443, complete genome) position: , mismatch: 3, identity: 0.9

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
gtggcaagaaaaaagaagaagacggtgacg	Protospacer
*.**.*****************.*******

25. spacer 1.4|1111968|30|LS483397|CRISPRCasFinder,CRT matches to NC_014123 ('Rehmannia glutinosa' phytoplasma plasmid pPARG1, complete sequence) position: , mismatch: 5, identity: 0.833

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
agattctcaaactaaaaaattaattaaaat	Protospacer
.* * ********************  ***

26. spacer 1.9|1112299|29|LS483397|CRISPRCasFinder,CRT matches to MK448754 (Streptococcus phage Javan411, complete genome) position: , mismatch: 5, identity: 0.828

tatctccgacttgaacagcattcttatta	CRISPR spacer
ctgctccgacttgaactgcattcttgtta	Protospacer
.  ************* ********.***

27. spacer 1.9|1112299|29|LS483397|CRISPRCasFinder,CRT matches to MK448929 (Streptococcus phage Javan400, complete genome) position: , mismatch: 5, identity: 0.828

tatctccgacttgaacagcattcttatta	CRISPR spacer
ctgctccgacttgaactgcattcttgtta	Protospacer
.  ************* ********.***

28. spacer 1.10|1112364|29|LS483397|CRISPRCasFinder,CRT matches to MK448754 (Streptococcus phage Javan411, complete genome) position: , mismatch: 5, identity: 0.828

tatctccgacttgaacagcattcttatta	CRISPR spacer
ctgctccgacttgaactgcattcttgtta	Protospacer
.  ************* ********.***

29. spacer 1.10|1112364|29|LS483397|CRISPRCasFinder,CRT matches to MK448929 (Streptococcus phage Javan400, complete genome) position: , mismatch: 5, identity: 0.828

tatctccgacttgaacagcattcttatta	CRISPR spacer
ctgctccgacttgaactgcattcttgtta	Protospacer
.  ************* ********.***

30. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP049358 (Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
tcgggaagaaaaaagaagaaggtggtgccc	Protospacer
 *** ****************.***** *

31. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP031159 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
tcgggaagaaaaaagaagaaggtggtgccc	Protospacer
 *** ****************.***** *

32. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to KX349297 (Cyanophage S-RIM44 isolate W2_10_0709, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

33. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to KX349293 (Cyanophage S-RIM44 isolate Np_20_0711, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

34. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to MN694288 (Marine virus AFVG_250M340, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
gcgctaagaaaaaagaagaagagcgttatg	Protospacer
*** ******************  ** *.*

35. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to KX349296 (Cyanophage S-RIM44 isolate Sn_13_0910, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

36. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to NC_047734 (Cyanophage S-RIM44 isolate Np_42_0711, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

37. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to MN694631 (Marine virus AFVG_250M342, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
gcgctaagaaaaaagaagaagagcgttatg	Protospacer
*** ******************  ** *.*

38. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to KU594607 (Cyanophage S-RIM44 isolate W2_07_0710, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

39. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to MW147367 (Synechococcus phage S-H9-2, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

40. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to KX349291 (Cyanophage S-RIM44 isolate ES_42_0910, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

41. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to NC_015288 (Prochlorococcus phage Syn1, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

42. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to KX349295 (Cyanophage S-RIM44 isolate Sn_08_0709, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

43. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to KX349292 (Cyanophage S-RIM44 isolate Np_05_0604, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

44. spacer 1.19|1111970|30|LS483397|PILER-CR matches to NC_014123 ('Rehmannia glutinosa' phytoplasma plasmid pPARG1, complete sequence) position: , mismatch: 5, identity: 0.833

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
agattctcaaactaaaaaattaattaaaat	Protospacer
.* * ********************  ***

45. spacer 1.24|1112301|29|LS483397|PILER-CR matches to MK448754 (Streptococcus phage Javan411, complete genome) position: , mismatch: 5, identity: 0.828

tatctccgacttgaacagcattcttatta	CRISPR spacer
ctgctccgacttgaactgcattcttgtta	Protospacer
.  ************* ********.***

46. spacer 1.24|1112301|29|LS483397|PILER-CR matches to MK448929 (Streptococcus phage Javan400, complete genome) position: , mismatch: 5, identity: 0.828

tatctccgacttgaacagcattcttatta	CRISPR spacer
ctgctccgacttgaactgcattcttgtta	Protospacer
.  ************* ********.***

47. spacer 1.25|1112366|29|LS483397|PILER-CR matches to MK448754 (Streptococcus phage Javan411, complete genome) position: , mismatch: 5, identity: 0.828

tatctccgacttgaacagcattcttatta	CRISPR spacer
ctgctccgacttgaactgcattcttgtta	Protospacer
.  ************* ********.***

48. spacer 1.25|1112366|29|LS483397|PILER-CR matches to MK448929 (Streptococcus phage Javan400, complete genome) position: , mismatch: 5, identity: 0.828

tatctccgacttgaacagcattcttatta	CRISPR spacer
ctgctccgacttgaactgcattcttgtta	Protospacer
.  ************* ********.***

49. spacer 1.30|1112696|30|LS483397|PILER-CR matches to NZ_CP049358 (Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
tcgggaagaaaaaagaagaaggtggtgccc	Protospacer
 *** ****************.***** *

50. spacer 1.30|1112696|30|LS483397|PILER-CR matches to NZ_CP031159 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdA, complete sequence) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
tcgggaagaaaaaagaagaaggtggtgccc	Protospacer
 *** ****************.***** *

51. spacer 1.30|1112696|30|LS483397|PILER-CR matches to KX349297 (Cyanophage S-RIM44 isolate W2_10_0709, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

52. spacer 1.30|1112696|30|LS483397|PILER-CR matches to KX349293 (Cyanophage S-RIM44 isolate Np_20_0711, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

53. spacer 1.30|1112696|30|LS483397|PILER-CR matches to MN694288 (Marine virus AFVG_250M340, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
gcgctaagaaaaaagaagaagagcgttatg	Protospacer
*** ******************  ** *.*

54. spacer 1.30|1112696|30|LS483397|PILER-CR matches to KX349296 (Cyanophage S-RIM44 isolate Sn_13_0910, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

55. spacer 1.30|1112696|30|LS483397|PILER-CR matches to NC_047734 (Cyanophage S-RIM44 isolate Np_42_0711, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

56. spacer 1.30|1112696|30|LS483397|PILER-CR matches to MN694631 (Marine virus AFVG_250M342, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
gcgctaagaaaaaagaagaagagcgttatg	Protospacer
*** ******************  ** *.*

57. spacer 1.30|1112696|30|LS483397|PILER-CR matches to KU594607 (Cyanophage S-RIM44 isolate W2_07_0710, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

58. spacer 1.30|1112696|30|LS483397|PILER-CR matches to MW147367 (Synechococcus phage S-H9-2, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

59. spacer 1.30|1112696|30|LS483397|PILER-CR matches to KX349291 (Cyanophage S-RIM44 isolate ES_42_0910, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

60. spacer 1.30|1112696|30|LS483397|PILER-CR matches to NC_015288 (Prochlorococcus phage Syn1, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

61. spacer 1.30|1112696|30|LS483397|PILER-CR matches to KX349295 (Cyanophage S-RIM44 isolate Sn_08_0709, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

62. spacer 1.30|1112696|30|LS483397|PILER-CR matches to KX349292 (Cyanophage S-RIM44 isolate Np_05_0604, complete genome) position: , mismatch: 5, identity: 0.833

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
tcggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 *** ************.******* .***

63. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to KU594606 (Cyanophage S-RIM32 isolate RW_108_0702, complete genome) position: , mismatch: 6, identity: 0.8

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
ttggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 .** ************.******* .***

64. spacer 1.30|1112696|30|LS483397|PILER-CR matches to KU594606 (Cyanophage S-RIM32 isolate RW_108_0702, complete genome) position: , mismatch: 6, identity: 0.8

gcggtaagaaaaaagaagaagatggtgacg-	CRISPR spacer
ttggaaagaaaaaagaaaaagatgg-aacga	Protospacer
 .** ************.******* .***

65. spacer 1.4|1111968|30|LS483397|CRISPRCasFinder,CRT matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 7, identity: 0.767

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
agatgataaaactcaaaaattaatttcaaa	Protospacer
.* *. * ***** ***************

66. spacer 1.6|1112100|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP043609 (Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gacctctttgtcaaatagcatctctctgat	CRISPR spacer
tgcctatttctcaaatagcatctctttatt	Protospacer
 .*** *** ***************.*. *

67. spacer 1.8|1112233|30|LS483397|CRISPRCasFinder,CRT matches to NC_019777 (Cyanobacterium aponinum PCC 10605 plasmid pCYAN10605.01, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacaacttattactatctgattcagttg	CRISPR spacer
gaaatgttttattactatcggattcagttt	Protospacer
* **.. .*********** *********

68. spacer 1.19|1111970|30|LS483397|PILER-CR matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 7, identity: 0.767

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
agatgataaaactcaaaaattaatttcaaa	Protospacer
.* *. * ***** ***************

69. spacer 1.21|1112102|30|LS483397|PILER-CR matches to NZ_CP043609 (Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gacctctttgtcaaatagcatctctctgat	CRISPR spacer
tgcctatttctcaaatagcatctctttatt	Protospacer
 .*** *** ***************.*. *

70. spacer 1.23|1112235|30|LS483397|PILER-CR matches to NC_019777 (Cyanobacterium aponinum PCC 10605 plasmid pCYAN10605.01, complete sequence) position: , mismatch: 7, identity: 0.767

gcaacaacttattactatctgattcagttg	CRISPR spacer
gaaatgttttattactatcggattcagttt	Protospacer
* **.. .*********** *********

71. spacer 1.2|1111836|30|LS483397|CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 8, identity: 0.733

gaactgaaattgaagaagttacaccaccaa	CRISPR spacer
ttactgaaattaaagacgttacaccagttc	Protospacer
  *********.**** ********* .

72. spacer 1.3|1111902|30|LS483397|CRISPRCasFinder,CRT matches to JX094500 (Cronobacter phage CR5, complete genome) position: , mismatch: 8, identity: 0.733

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
cagactgctgacgagctttacgacctacac	Protospacer
. .*** ******** ********** ..*

73. spacer 1.3|1111902|30|LS483397|CRISPRCasFinder,CRT matches to MK448430 (Streptococcus satellite phage Javan324, complete genome) position: , mismatch: 8, identity: 0.733

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
gtaacttctgaagaggtgtacgactttctg	Protospacer
 ********** ***** ******.*..

74. spacer 1.3|1111902|30|LS483397|CRISPRCasFinder,CRT matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 8, identity: 0.733

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
gtaacttctgaagaggtgtacgactttctg	Protospacer
 ********** ***** ******.*..

75. spacer 1.3|1111902|30|LS483397|CRISPRCasFinder,CRT matches to MK448434 (Streptococcus satellite phage Javan329, complete genome) position: , mismatch: 8, identity: 0.733

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
gtaacttctgaagaggtgtacgactttctg	Protospacer
 ********** ***** ******.*..

76. spacer 1.4|1111968|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP029394 (Acinetobacter defluvii strain WCHA30 plasmid p6_010030, complete sequence) position: , mismatch: 8, identity: 0.733

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
ggctagtcaaactgaaaaattaaaaaaaga	Protospacer
***** *******.*********    *.

77. spacer 1.5|1112034|30|LS483397|CRISPRCasFinder,CRT matches to MN399336 (Edwardsiella phage vB_EtaM_ET-ABTNL-9, complete genome) position: , mismatch: 8, identity: 0.733

ttggtgtagctgtaacagacacaggtatat	CRISPR spacer
ttggtgtagctgtaataaacacataagatt	Protospacer
***************.*.***** . .  *

78. spacer 1.8|1112233|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP024772 (Bacillus thuringiensis LM1212 plasmid pLM1, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

79. spacer 1.8|1112233|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

80. spacer 1.8|1112233|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

81. spacer 1.8|1112233|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP015251 (Bacillus thuringiensis Bt18247 plasmid p174778, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

82. spacer 1.8|1112233|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP015253 (Bacillus thuringiensis Bt18247 plasmid p113275, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

83. spacer 1.8|1112233|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP015255 (Bacillus thuringiensis Bt18247 plasmid p15092, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

84. spacer 1.8|1112233|30|LS483397|CRISPRCasFinder,CRT matches to MN692959 (Marine virus AFVG_117M52, complete genome) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
catgcaaatttttactatctgattcagctt	Protospacer
   .*** ** ****************.*

85. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to NZ_LR134421 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12) position: , mismatch: 8, identity: 0.733

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
ctgctaagaacaaagaagaagatagtgcta	Protospacer
 .* ****** ************.*** ..

86. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to MN694283 (Marine virus AFVG_250M295, complete genome) position: , mismatch: 8, identity: 0.733

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
ttagatcgaaaaaagaagaagacgatgacg	Protospacer
 ..*   ***************.*.*****

87. spacer 1.17|1111838|30|LS483397|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 8, identity: 0.733

gaactgaaattgaagaagttacaccaccaa	CRISPR spacer
ttactgaaattaaagacgttacaccagttc	Protospacer
  *********.**** ********* .

88. spacer 1.18|1111904|30|LS483397|PILER-CR matches to JX094500 (Cronobacter phage CR5, complete genome) position: , mismatch: 8, identity: 0.733

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
cagactgctgacgagctttacgacctacac	Protospacer
. .*** ******** ********** ..*

89. spacer 1.18|1111904|30|LS483397|PILER-CR matches to MK448430 (Streptococcus satellite phage Javan324, complete genome) position: , mismatch: 8, identity: 0.733

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
gtaacttctgaagaggtgtacgactttctg	Protospacer
 ********** ***** ******.*..

90. spacer 1.18|1111904|30|LS483397|PILER-CR matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 8, identity: 0.733

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
gtaacttctgaagaggtgtacgactttctg	Protospacer
 ********** ***** ******.*..

91. spacer 1.18|1111904|30|LS483397|PILER-CR matches to MK448434 (Streptococcus satellite phage Javan329, complete genome) position: , mismatch: 8, identity: 0.733

ttaacttctgacgaggtttacgacctctgc	CRISPR spacer
gtaacttctgaagaggtgtacgactttctg	Protospacer
 ********** ***** ******.*..

92. spacer 1.19|1111970|30|LS483397|PILER-CR matches to NZ_CP029394 (Acinetobacter defluvii strain WCHA30 plasmid p6_010030, complete sequence) position: , mismatch: 8, identity: 0.733

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
ggctagtcaaactgaaaaattaaaaaaaga	Protospacer
***** *******.*********    *.

93. spacer 1.20|1112036|30|LS483397|PILER-CR matches to MN399336 (Edwardsiella phage vB_EtaM_ET-ABTNL-9, complete genome) position: , mismatch: 8, identity: 0.733

ttggtgtagctgtaacagacacaggtatat	CRISPR spacer
ttggtgtagctgtaataaacacataagatt	Protospacer
***************.*.***** . .  *

94. spacer 1.23|1112235|30|LS483397|PILER-CR matches to NZ_CP024772 (Bacillus thuringiensis LM1212 plasmid pLM1, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

95. spacer 1.23|1112235|30|LS483397|PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

96. spacer 1.23|1112235|30|LS483397|PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

97. spacer 1.23|1112235|30|LS483397|PILER-CR matches to NZ_CP015251 (Bacillus thuringiensis Bt18247 plasmid p174778, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

98. spacer 1.23|1112235|30|LS483397|PILER-CR matches to NZ_CP015253 (Bacillus thuringiensis Bt18247 plasmid p113275, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

99. spacer 1.23|1112235|30|LS483397|PILER-CR matches to NZ_CP015255 (Bacillus thuringiensis Bt18247 plasmid p15092, complete sequence) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
tagaaaacttattactttctgattcaacta	Protospacer
  .* *********** *********..*.

100. spacer 1.23|1112235|30|LS483397|PILER-CR matches to MN692959 (Marine virus AFVG_117M52, complete genome) position: , mismatch: 8, identity: 0.733

gcaacaacttattactatctgattcagttg	CRISPR spacer
catgcaaatttttactatctgattcagctt	Protospacer
   .*** ** ****************.*

101. spacer 1.30|1112696|30|LS483397|PILER-CR matches to NZ_LR134421 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12) position: , mismatch: 8, identity: 0.733

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
ctgctaagaacaaagaagaagatagtgcta	Protospacer
 .* ****** ************.*** ..

102. spacer 1.30|1112696|30|LS483397|PILER-CR matches to MN694283 (Marine virus AFVG_250M295, complete genome) position: , mismatch: 8, identity: 0.733

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
ttagatcgaaaaaagaagaagacgatgacg	Protospacer
 ..*   ***************.*.*****

103. spacer 1.2|1111836|30|LS483397|CRISPRCasFinder,CRT matches to MN693772 (Marine virus AFVG_250M408, complete genome) position: , mismatch: 9, identity: 0.7

gaactgaaattgaagaagttacaccaccaa	CRISPR spacer
ttgctgaaattgaagttgttacaccatttc	Protospacer
  .************  *********..

104. spacer 1.4|1111968|30|LS483397|CRISPRCasFinder,CRT matches to NZ_KT780704 (Staphylococcus aureus subsp. aureus RN4220 plasmid pRM27, complete sequence) position: , mismatch: 9, identity: 0.7

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
catgttacatactaaaaaattaatttgaat	Protospacer
 ..  . ** **************** ***

105. spacer 1.4|1111968|30|LS483397|CRISPRCasFinder,CRT matches to NZ_CP024400 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-2, complete sequence) position: , mismatch: 9, identity: 0.7

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
ttatactaaaactaataaattaatttattg	Protospacer
   **** ******* **********

106. spacer 1.6|1112100|30|LS483397|CRISPRCasFinder,CRT matches to HQ634190 (Cyanophage Syn2 genomic sequence) position: , mismatch: 9, identity: 0.7

gacctctttgtcaaatagcatctctctgat	CRISPR spacer
ccatatcttgttcaatagcatctctctgat	Protospacer
   . ..****. *****************

107. spacer 1.6|1112100|30|LS483397|CRISPRCasFinder,CRT matches to NC_015286 (Synechococcus phage Syn19, complete genome) position: , mismatch: 9, identity: 0.7

gacctctttgtcaaatagcatctctctgat	CRISPR spacer
ccatatcttgttcaatagcatctctctgat	Protospacer
   . ..****. *****************

108. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to NC_029119 (Staphylococcus phage SPbeta-like, complete genome) position: , mismatch: 9, identity: 0.7

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
ctatgaagaaaaaatatgaagatggtgaac	Protospacer
 ..  ********* * ***********

109. spacer 1.17|1111838|30|LS483397|PILER-CR matches to MN693772 (Marine virus AFVG_250M408, complete genome) position: , mismatch: 9, identity: 0.7

gaactgaaattgaagaagttacaccaccaa	CRISPR spacer
ttgctgaaattgaagttgttacaccatttc	Protospacer
  .************  *********..

110. spacer 1.19|1111970|30|LS483397|PILER-CR matches to NZ_KT780704 (Staphylococcus aureus subsp. aureus RN4220 plasmid pRM27, complete sequence) position: , mismatch: 9, identity: 0.7

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
catgttacatactaaaaaattaatttgaat	Protospacer
 ..  . ** **************** ***

111. spacer 1.19|1111970|30|LS483397|PILER-CR matches to NZ_CP024400 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-2, complete sequence) position: , mismatch: 9, identity: 0.7

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
ttatactaaaactaataaattaatttattg	Protospacer
   **** ******* **********

112. spacer 1.21|1112102|30|LS483397|PILER-CR matches to HQ634190 (Cyanophage Syn2 genomic sequence) position: , mismatch: 9, identity: 0.7

gacctctttgtcaaatagcatctctctgat	CRISPR spacer
ccatatcttgttcaatagcatctctctgat	Protospacer
   . ..****. *****************

113. spacer 1.21|1112102|30|LS483397|PILER-CR matches to NC_015286 (Synechococcus phage Syn19, complete genome) position: , mismatch: 9, identity: 0.7

gacctctttgtcaaatagcatctctctgat	CRISPR spacer
ccatatcttgttcaatagcatctctctgat	Protospacer
   . ..****. *****************

114. spacer 1.30|1112696|30|LS483397|PILER-CR matches to NC_029119 (Staphylococcus phage SPbeta-like, complete genome) position: , mismatch: 9, identity: 0.7

gcggtaagaaaaaagaagaagatggtgacg	CRISPR spacer
ctatgaagaaaaaatatgaagatggtgaac	Protospacer
 ..  ********* * ***********

115. spacer 1.4|1111968|30|LS483397|CRISPRCasFinder,CRT matches to AP013737 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C40-MedDCM-OCT-S36-C23, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.667

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
tatagttcaaaataaaaaattaatttctca	Protospacer
 .. ..***** ***************

116. spacer 1.4|1111968|30|LS483397|CRISPRCasFinder,CRT matches to AP013738 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C40-MedDCM-OCT-S40-C68, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.667

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
tatagttcaaaataaaaaattaatttctca	Protospacer
 .. ..***** ***************

117. spacer 1.4|1111968|30|LS483397|CRISPRCasFinder,CRT matches to AP013445 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C40-MedDCM-OCT-S28-C16) position: , mismatch: 10, identity: 0.667

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
tatagttcaaaataaaaaattaatttctca	Protospacer
 .. ..***** ***************

118. spacer 1.19|1111970|30|LS483397|PILER-CR matches to AP013737 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C40-MedDCM-OCT-S36-C23, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.667

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
tatagttcaaaataaaaaattaatttctca	Protospacer
 .. ..***** ***************

119. spacer 1.19|1111970|30|LS483397|PILER-CR matches to AP013738 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C40-MedDCM-OCT-S40-C68, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.667

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
tatagttcaaaataaaaaattaatttctca	Protospacer
 .. ..***** ***************

120. spacer 1.19|1111970|30|LS483397|PILER-CR matches to AP013445 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C40-MedDCM-OCT-S28-C16) position: , mismatch: 10, identity: 0.667

ggctactcaaactaaaaaattaatttcaat	CRISPR spacer
tatagttcaaaataaaaaattaatttctca	Protospacer
 .. ..***** ***************

121. spacer 1.15|1112694|30|LS483397|CRISPRCasFinder,CRT matches to MT773557 (Myoviridae sp. isolate BML_S_1 genomic sequence) position: , mismatch: 11, identity: 0.633

gcggtaagaaaaaagaagaagatggtgacg---	CRISPR spacer
---ctaaaaagaaaaaagaagatgagggtgaat	Protospacer
    ***.**.***.*********. *..*

122. spacer 1.30|1112696|30|LS483397|PILER-CR matches to MT773557 (Myoviridae sp. isolate BML_S_1 genomic sequence) position: , mismatch: 11, identity: 0.633

gcggtaagaaaaaagaagaagatggtgacg---	CRISPR spacer
---ctaaaaagaaaaaagaagatgagggtgaat	Protospacer
    ***.**.***.*********. *..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

111988 : 160164

Streptococcus_phage(79.55%)

holin,tRNA,capsid,terminase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG45433.1\|111988_113245_-\|tRNA	tyrosyl-tRNA synthetase	K4F5T3	Cronobacter_phage	9.9e-72	39.2
SQG45434.1\|113351_115655_+	penicillin-binding protein 1B	NA	NA	NA	NA
SQG45435.1\|115918_119485_+	DNA-directed RNA polymerase subunit beta	A0A2P0VMZ3	Tetraselmis_virus	2.4e-38	25.9
SQG45436.1\|119576_123215_+	DNA-directed RNA polymerase subunit beta'	R4TQM7	Phaeocystis_globosa_virus	1.4e-65	25.4
SQG45437.1\|123335_123701_+	dipicolinate synthase	NA	NA	NA	NA
SQG45438.1\|123773_124715_+	competence protein	NA	NA	NA	NA
SQG45439.1\|124779_125682_+	competence protein	NA	NA	NA	NA
SQG45440.1\|125682_125805_+	competence protein	NA	NA	NA	NA
SQG45441.1\|125762_127208_-	site-specific recombinase/resolvase	E8ZDY7	Streptococcus_phage	4.0e-202	72.8
SQG45442.1\|127357_127807_-	Host cell surface-exposed lipoprotein	A0A097BY93	Leuconostoc_phage	8.0e-08	51.7
SQG45443.1\|127859_128234_-	cI-like repressor	A0A1P8VVK5	Streptococcus_phage	1.9e-47	67.7
SQG45444.1\|128220_128583_-	XRE family transcriptional regulator	M1PRN5	Streptococcus_phage	3.6e-35	66.1
SQG45445.1\|128773_128974_+	XRE family transcriptional regulator	A0A1X9I583	Streptococcus_phage	1.7e-18	66.2
SQG45446.1\|129020_129746_+	phage antirepressor protein	Q938N5	Temperate_phage	6.9e-110	79.2
SQG45447.1\|129757_130099_+	Uncharacterised protein	NA	NA	NA	NA
SQG45448.1\|130099_130312_-	Uncharacterised protein	NA	NA	NA	NA
SQG45449.1\|130709_130868_+	Uncharacterised protein	A0A141E1D2	Streptococcus_phage	2.8e-16	73.1
SQG45450.1\|131394_131676_+	Uncharacterised protein	A0A1S5SA04	Streptococcus_phage	1.8e-13	46.7
SQG45451.1\|131675_131936_+	Uncharacterised protein	NA	NA	NA	NA
SQG45452.1\|131948_132080_+	Uncharacterised protein	A0A1S5SA31	Streptococcus_phage	4.2e-10	69.0
SQG45453.1\|132083_132263_+	Uncharacterised protein	A0A1S5SAF4	Streptococcus_phage	3.0e-14	64.4
SQG45454.1\|132259_133033_+	phage protein RecT family	A0A1S5SFP4	Streptococcus_phage	1.8e-108	77.4
SQG45455.1\|133043_134072_+	phage protein	A0A1S5SFI4	Streptococcus_phage	1.4e-116	66.5
SQG45456.1\|134074_134344_+	Uncharacterised protein	M1Q1G3	Streptococcus_phage	4.0e-47	96.6
SQG45457.1\|134353_134677_+	Uncharacterised protein	M1PS51	Streptococcus_phage	2.8e-18	52.6
SQG45458.1\|134673_134853_+	Uncharacterised protein	NA	NA	NA	NA
SQG45459.1\|135322_135664_+	phage protein	M1PKX3	Streptococcus_phage	1.4e-12	41.1
SQG45460.1\|135663_136092_+	holliday junction resolvase	A0A141E1Z1	Streptococcus_phage	1.9e-70	91.4
SQG45461.1\|136082_136397_+	phage protein	A1EAD7	Streptococcus_phage	5.6e-32	73.6
SQG45462.1\|136396_136846_+	phage protein	A0A1C9LX52	Streptococcus_phage	8.5e-34	54.2
SQG45463.1\|136826_137072_+	Uncharacterised protein	W6LP69	Streptococcus_phage	3.3e-08	50.0
SQG45464.1\|137068_137383_+	Uncharacterised protein	A0A1S5S7Z8	Streptococcus_phage	1.6e-18	49.5
SQG45465.1\|137457_137874_+	phage protein	A0A141E1Y4	Streptococcus_phage	1.3e-55	81.2
SQG45466.1\|138033_138765_+	Uncharacterized conserved protein	A0A1L2JY44	Aeribacillus_phage	1.6e-26	37.6
SQG45467.1\|138733_140032_+\|terminase	putative phage terminase large subunit	A0A286QNX6	Streptococcus_phage	2.5e-163	65.1
SQG45468.1\|140094_141555_+\|capsid	Minor capsid protein	A0A286QNN2	Streptococcus_phage	5.2e-205	72.2
SQG45469.1\|141559_143182_+\|capsid	phage minor capsid 2 family protein	A0A286QMS2	Streptococcus_phage	3.8e-164	70.9
SQG45470.1\|143178_143370_+	Uncharacterised protein	NA	NA	NA	NA
SQG45471.1\|143420_143693_+	phage protein	NA	NA	NA	NA
SQG45472.1\|143860_144424_+	putative scaffolding protein	A0A2H4JBH4	uncultured_Caudovirales_phage	1.0e-52	66.5
SQG45473.1\|144444_145314_+\|capsid	major capsid protein	D2J061	Enterococcus_phage	3.5e-100	65.4
SQG45474.1\|145327_145486_+	Uncharacterised protein	NA	NA	NA	NA
SQG45475.1\|145491_145692_+	Uncharacterised protein	NA	NA	NA	NA
SQG45476.1\|145712_146117_+	phage protein	C5IUJ7	Streptococcus_phage	2.9e-33	54.6
SQG45477.1\|146103_146445_+	phage protein	A0A286QMS6	Streptococcus_phage	1.6e-40	64.5
SQG45478.1\|146444_146807_+	phage protein	A0A286QMS1	Streptococcus_phage	2.9e-40	67.2
SQG45479.1\|146803_147205_+\|capsid	minor capsid protein	A0A2H4JHL9	uncultured_Caudovirales_phage	4.4e-42	61.9
SQG45480.1\|147205_147667_+\|tail	major tail shaft protein	A0A1P8VVM4	Streptococcus_phage	2.1e-35	51.3
SQG45481.1\|147729_148098_+	Uncharacterised protein	A0A286QNZ4	Streptococcus_phage	1.7e-24	51.2
SQG45482.1\|148099_148699_+	phage protein	A0A286QMS7	Streptococcus_phage	6.2e-48	46.9
SQG45483.1\|148714_152092_+	phage protein	A0A286QN99	Streptococcus_phage	5.5e-08	36.8
SQG45484.1\|152088_153531_+\|tail	tail protein	K4JTI1	Streptococcus_phage	6.9e-61	32.3
SQG45485.1\|153530_156311_+	prophage LambdaSa1, N-acetylmuramoyl-L-alanine amidase, family 4	A0A286QQK2	Streptococcus_phage	2.2e-119	33.2
SQG45486.1\|156324_158334_+	phage structural protein	A0A286QNJ5	Streptococcus_phage	1.7e-203	57.5
SQG45487.1\|158346_158745_+	Protein of uncharacterised function (DUF1366)	A0A1P8VVN2	Streptococcus_phage	4.2e-08	35.7
SQG45488.1\|158744_158966_+	Uncharacterised protein	A0A1X9I5T1	Streptococcus_phage	2.8e-14	61.7
SQG45489.1\|158978_159449_+\|holin	holin protein	NA	NA	NA	NA
SQG45490.1\|159450_160164_+	lysin	Q2I7P1	Streptococcus_phage	1.7e-113	84.0

DBSCAN-SWA_2

193045 : 201317

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG45527.1\|193045_193417_-	Death on curing protein	D0R0D2	Streptococcus_phage	3.5e-41	64.2
SQG45528.1\|193413_193671_-	Phd_YefM	A0A1X9I6A0	Streptococcus_phage	2.2e-26	71.8
SQG45529.1\|193862_195113_-	tellurite resistance protein	M1PLC8	Streptococcus_phage	8.2e-127	65.9
SQG45530.1\|195121_195982_-	membrane protein	M1PFV6	Streptococcus_phage	1.5e-26	37.8
SQG45531.1\|196336_197629_+	adenylosuccinate synthetase	G5CQQ4	Megavirus	8.6e-71	36.7
SQG45532.1\|197752_197926_+	Uncharacterised protein	NA	NA	NA	NA
SQG45533.1\|198007_198364_+	Lin0147	NA	NA	NA	NA
SQG45534.1\|198590_199634_+	basic membrane protein	NA	NA	NA	NA
SQG45535.1\|199673_200447_-	pyruvate formate-lyase activating enzyme	NA	NA	NA	NA
SQG45536.1\|200573_201317_+	DeoR family regulatory protein	A0A077SK06	Escherichia_phage	5.4e-17	26.0

DBSCAN-SWA_3

480736 : 495392

Streptococcus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG45818.1\|480736_481501_+	branched-chain amino acid transport ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.3e-17	26.1
SQG45819.1\|481500_482211_+	branched-chain amino acid transport ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-16	26.7
SQG45820.1\|482280_482943_+	5'-AMP-activated protein kinase subunit gamma-3	M1NSC5	Streptococcus_phage	3.5e-60	57.9
SQG45821.1\|483026_483662_+	thymidylate kinase	M1PSC7	Streptococcus_phage	2.3e-69	63.8
SQG45822.1\|483677_484553_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	5.8e-79	53.2
SQG45823.1\|484549_485350_+	stage 0 sporulation protein	NA	NA	NA	NA
SQG45824.1\|485339_485693_+	DNA replication intiation control protein YabA	M1PFV3	Streptococcus_phage	2.3e-26	57.5
SQG45825.1\|485670_486534_+	tetrapyrrole methylase	M1PLC5	Streptococcus_phage	8.5e-115	72.4
SQG45826.1\|486659_487055_+	membrane protein	NA	NA	NA	NA
SQG45827.1\|487087_487720_-	CutC family protein	NA	NA	NA	NA
SQG45828.1\|487843_488938_+	phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	3.4e-161	76.6
SQG45829.1\|488953_489502_+	GNAT family acetyltransferase	M1PSC3	Streptococcus_phage	2.6e-48	53.9
SQG45830.1\|489532_490735_+	D-isomer specific 2-hydroxyacid dehydrogenase	M1NSB9	Streptococcus_phage	4.7e-172	77.6
SQG45831.1\|490783_491323_+	methylated-DNA--protein-cysteine methyltransferase	M1PFU9	Streptococcus_phage	5.1e-41	54.2
SQG45832.1\|491262_491616_+	ArsC family protein	M1PLC0	Streptococcus_phage	1.6e-35	60.9
SQG45833.1\|491648_492551_-	cation efflux family protein	M1Q1N9	Streptococcus_phage	2.9e-73	48.3
SQG45834.1\|492948_493365_-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein	NA	NA	NA	NA
SQG45835.1\|493386_493761_-	glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein	NA	NA	NA	NA
SQG45836.1\|493900_494524_-	DNA alkylation repair enzyme	NA	NA	NA	NA
SQG45837.1\|494564_495392_-	exodeoxyribonuclease	M1PSC0	Streptococcus_phage	3.3e-124	78.0

DBSCAN-SWA_4

499299 : 535927

Staphylococcus_phage(25.0%)

tRNA,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG45842.1\|499299_501306_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SHR2	Klosneuvirus	5.6e-85	35.3
SQG45843.1\|501519_501702_+	membrane protein	NA	NA	NA	NA
SQG45844.1\|501667_502201_+\|tRNA	lysyl-tRNA synthetase	NA	NA	NA	NA
SQG45845.1\|502362_503706_+	branched-chain amino acid transport system carrier protein	NA	NA	NA	NA
SQG45846.1\|503813_504146_-	signal peptide	NA	NA	NA	NA
SQG45847.1\|504344_504581_+\|tRNA	methionine--tRNA ligase	NA	NA	NA	NA
SQG45848.1\|504573_505272_+	3-ketoacyl-ACP reductase	NA	NA	NA	NA
SQG45849.1\|505368_506331_+	NAD-dependent oxidoreductase	NA	NA	NA	NA
SQG45850.1\|506461_507838_+	bifunctional GlmU protein	A0A2K9L4K9	Tupanvirus	2.4e-34	38.1
SQG45851.1\|507858_508416_+	ADP-ribose pyrophosphatase	NA	NA	NA	NA
SQG45852.1\|508412_508673_+	membrane protein	NA	NA	NA	NA
SQG45853.1\|508688_509381_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA
SQG45854.1\|509415_510063_-	metal-dependent transcriptional regulator	NA	NA	NA	NA
SQG45855.1\|510208_511141_+	extracellular manganese-binding protein	NA	NA	NA	NA
SQG45856.1\|511200_511923_+	metal cation ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.9e-15	28.7
SQG45857.1\|511926_512766_+	metal cation ABC transporter membrane protein	NA	NA	NA	NA
SQG45858.1\|513273_514086_-	cyclophilin type peptidyl-prolyl cis-trans isomerase	A0A2H4UTF4	Bodo_saltans_virus	1.8e-21	39.0
SQG45859.1\|514181_516590_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	3.2e-87	51.7
SQG45860.1\|516618_516975_-	membrane protein	NA	NA	NA	NA
SQG45861.1\|517219_517645_+	50S ribosomal protein L11	NA	NA	NA	NA
SQG45862.1\|517750_518440_+	50S ribosomal protein L1	NA	NA	NA	NA
SQG45863.1\|518579_519308_+	uridylate kinase	NA	NA	NA	NA
SQG45864.1\|519343_519901_+	ribosome recycling factor	NA	NA	NA	NA
SQG45865.1\|520015_520870_+	s1 RNA binding domain	NA	NA	NA	NA
SQG45866.1\|520953_521463_+	peptide methionine sulfoxide reductase	NA	NA	NA	NA
SQG45867.1\|521459_521675_+	hypothetical cytosolic protein	NA	NA	NA	NA
SQG45868.1\|521855_522935_+	PhoH-like protein	W8D063	Erwinia_phage	7.3e-47	47.5
SQG45869.1\|522979_523555_+	uracil DNA glycosylase superfamily protein	NA	NA	NA	NA
SQG45870.1\|523647_524148_+\|protease	putative metalloprotease	NA	NA	NA	NA
SQG45871.1\|524125_524530_+	diacylglycerol kinase	NA	NA	NA	NA
SQG45872.1\|524551_525451_+	GTP-binding protein Era	NA	NA	NA	NA
SQG45873.1\|525861_526248_+	Uncharacterised protein	NA	NA	NA	NA
SQG45874.1\|526306_527098_+	membrane protein	NA	NA	NA	NA
SQG45875.1\|527084_527738_+	membrane protein	NA	NA	NA	NA
SQG45876.1\|527700_528330_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.5e-17	31.0
SQG45877.1\|528757_529498_+	response regulator protein	NA	NA	NA	NA
SQG45878.1\|529628_530840_+	sensor histidine kinase	NA	NA	NA	NA
SQG45879.1\|530849_530996_-	COMC family	NA	NA	NA	NA
SQG45880.1\|531031_533185_-\|bacteriocin	bacteriocin transport/processing ATP-binding protein	W8CYL7	Bacillus_phage	9.1e-41	28.8
SQG45881.1\|533442_533649_+	Uncharacterised protein	NA	NA	NA	NA
SQG45882.1\|534267_534492_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
SQG45883.1\|534502_534703_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
SQG45884.1\|534699_534876_-	Uncharacterised protein	NA	NA	NA	NA
SQG45885.1\|534896_535208_+	membrane protein	NA	NA	NA	NA
SQG45886.1\|535379_535625_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
SQG45887.1\|535627_535927_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_5

982889 : 991143

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG46320.1\|982889_983810_+	pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	2.1e-31	34.8
SQG46321.1\|983878_984112_+	30S ribosomal protein S20	NA	NA	NA	NA
SQG46322.1\|984188_985499_-	sensor histidine kinase	Q8QNA2	Ectocarpus_siliculosus_virus	2.2e-05	29.2
SQG46323.1\|985491_986166_-	response regulator protein	W8CYM9	Bacillus_phage	5.2e-27	33.2
SQG46324.1\|986287_988825_-	lysyl-aminopeptidase	A0A0P0IY26	Acinetobacter_phage	2.2e-70	25.1
SQG46325.1\|988895_989549_-	phosphate transport system protein	NA	NA	NA	NA
SQG46326.1\|989568_990327_-	phosphate import ATP-binding protein 1	G3M9Y6	Bacillus_virus	6.5e-18	30.5
SQG46327.1\|990339_991143_-	Phosphate transport ATP-binding protein pstB2	G3M9Y6	Bacillus_virus	5.3e-18	31.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage