CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483398	Bordetella pertussis strain NCTC10910 genome assembly, chromosome: 1	4 crisprs	csa3,cas3,DinG,DEDDh	0	0	34	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483398_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483398_1

586526-586610

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483398_1

>merge|LS483398|1|586526-586610|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAGGGTGCCTGTCCCCGCGGGGACAG

>LS483398|1|1|586526-586610|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAG
GGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483398.1\|SQG59920.1\|580140_580971_+\|catabolic-enzyme	unknown	unknown	gnl\|CDD\|377179
LS483398.1\|SQG59927.1\|586620_587562_-\|tRNA-delta(2)-isopentenylpyrophosphate-transferase	unknown	unknown	gnl\|CDD\|234626
LS483398.1\|SQG59936.1\|596897_598652_+\|gamma-glutamyltranspeptidase	unknown	unknown	gnl\|CDD\|223482
LS483398.1\|SQG59929.1\|589534_590173_+\|membrane-protein	unknown	unknown	gnl\|CDD\|182775
LS483398.1\|SQG59932.1\|592319_593711_+\|fumarate-hydratase-class-II	unknown	unknown	gnl\|CDD\|234779
LS483398.1\|SQG59928.1\|587558_589448_-\|DNA-mismatch-repair-protein	unknown	unknown	gnl\|CDD\|234630
LS483398.1\|SQG59923.1\|582460_583816_-\|poly(A)-polymerase	unknown	unknown	gnl\|CDD\|130997
LS483398.1\|SQG59926.1\|585465_586515_+\|phosphoribosylaminoimidazole-synthetase	unknown	unknown	gnl\|CDD\|235439
LS483398.1\|SQG59919.1\|577484_579587_+\|TRAP-type-C4-dicarboxylate-transport-system-protein	unknown	unknown	gnl\|CDD\|129868
LS483398.1\|SQG59934.1\|594843_595827_+\|putattive-exported-protein	unknown	unknown	gnl\|CDD\|270295
LS483398.1\|SQG59922.1\|581972_582464_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase	unknown	unknown	gnl\|CDD\|172582
LS483398.1\|SQG59925.1\|584511_585213_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|236347
LS483398.1\|SQG59933.1\|593727_594639_-\|transporter	unknown	unknown	gnl\|CDD\|223751
LS483398.1\|SQG59917.1\|575483_576197_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
LS483398.1\|SQG59931.1\|591631_592168_-\|ADP-binding-protein	unknown	unknown	gnl\|CDD\|223873
LS483398.1\|SQG59921.1\|580997_581954_+\|lipoprotein	unknown	unknown	gnl\|CDD\|270296
LS483398.1\|SQG59918.1\|576270_577314_-\|solute-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|270320
LS483398.1\|SQG59924.1\|583816_584515_-\|Phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|319796
LS483398.1\|SQG59930.1\|590315_591560_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
LS483398.1\|SQG59935.1\|595891_596791_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107

Protein	Function_ID	Function_description	E-value
LS483398.1\|SQG59920.1\|580140_580971_+\|catabolic-enzyme	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	4.90811e-48
LS483398.1\|SQG59927.1\|586620_587562_-\|tRNA-delta(2)-isopentenylpyrophosphate-transferase	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.17279e-156
LS483398.1\|SQG59936.1\|596897_598652_+\|gamma-glutamyltranspeptidase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
LS483398.1\|SQG59929.1\|589534_590173_+\|membrane-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.10927e-69
LS483398.1\|SQG59932.1\|592319_593711_+\|fumarate-hydratase-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
LS483398.1\|SQG59928.1\|587558_589448_-\|DNA-mismatch-repair-protein	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
LS483398.1\|SQG59923.1\|582460_583816_-\|poly(A)-polymerase	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	4.58369e-147
LS483398.1\|SQG59926.1\|585465_586515_+\|phosphoribosylaminoimidazole-synthetase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
LS483398.1\|SQG59919.1\|577484_579587_+\|TRAP-type-C4-dicarboxylate-transport-system-protein	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.77055e-96
LS483398.1\|SQG59934.1\|594843_595827_+\|putattive-exported-protein	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	4.35876e-158
LS483398.1\|SQG59922.1\|581972_582464_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase	gnl\|CDD\|172582	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	2.78166e-87
LS483398.1\|SQG59925.1\|584511_585213_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	2.81236e-100
LS483398.1\|SQG59933.1\|593727_594639_-\|transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	6.18631e-41
LS483398.1\|SQG59917.1\|575483_576197_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.62547e-43
LS483398.1\|SQG59931.1\|591631_592168_-\|ADP-binding-protein	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	2.28113e-54
LS483398.1\|SQG59921.1\|580997_581954_+\|lipoprotein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.01101e-118
LS483398.1\|SQG59918.1\|576270_577314_-\|solute-binding-periplasmic-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.99378e-85
LS483398.1\|SQG59924.1\|583816_584515_-\|Phosphoserine-phosphatase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.91431e-64
LS483398.1\|SQG59930.1\|590315_591560_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	7.29619e-86
LS483398.1\|SQG59935.1\|595891_596791_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.62875e-38

>LS483398.1|SQG59926.1|585465_586515_+|phosphoribosylaminoimidazole-synthetase
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQDGMAQTVVV
>LS483398.1|SQG59925.1|584511_585213_-|DnaA-regulatory-inactivator-Hda
MNRQLLLDVLPAPAPALNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPHSQAT
>LS483398.1|SQG59924.1|583816_584515_-|Phosphoserine-phosphatase
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>LS483398.1|SQG59923.1|582460_583816_-|poly(A)-polymerase
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLAQWWMDLANGDDATRAEMIEETAHLPRETGDAPAQKRRRPRRRPSNRPREPQ
>LS483398.1|SQG59922.1|581972_582464_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase
MNGSPASTLAYVGLGASLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVEAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELVPALRLAQGDCAALLAALEDQAIEPLR
>LS483398.1|SQG59921.1|580997_581954_+|lipoprotein
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGIQALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>LS483398.1|SQG59920.1|580140_580971_+|catabolic-enzyme
MVAALGCAAVQAGGQVETLGTAAKSISVGNAARNGLLSALLAAEGFDGPPQPLEGVRGYLRVAADAPDIAAVSAGLGERWEVLNNTYKPYPCGVVLNPVIDACLALAADPRIAGGGWAAIERIELTGHPLLKQRTDRPGVATGRQSQVSAQHAVAVALVRGRAGLPEFSDEAVADAGLRALGLRLGFRDDASMSVDAVKVRIAFQDGTLLEREVQAAHGSRERPLQDDEIEEKLRELCRHGGARVDADRLIEAVWTLDEAGDAAAVMRLAAEQPAA
>LS483398.1|SQG59919.1|577484_579587_+|TRAP-type-C4-dicarboxylate-transport-system-protein
MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRACGALATVALLLMALSMCYEIFSRYLFNAPTAWATEISGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTPQWMPELAVSVGMVVFCMSILVDIYRLSPPAQAWRRWLTPALLALLAAALVALGANAVPMAAGGRFDWGMALIVAALLACAWAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMIERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>LS483398.1|SQG59918.1|576270_577314_-|solute-binding-periplasmic-protein
MSQRFPLPRGFQAALAAAALCTASWSGAAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPINGWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTTLGKSASN
>LS483398.1|SQG59917.1|575483_576197_-|GntR-family-transcriptional-regulator
MTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLADAAATAE
>LS483398.1|SQG59927.1|586620_587562_-|tRNA-delta(2)-isopentenylpyrophosphate-transferase
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAEFRADALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQRIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>LS483398.1|SQG59928.1|587558_589448_-|DNA-mismatch-repair-protein
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLPVLAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDTAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>LS483398.1|SQG59929.1|589534_590173_+|membrane-protein
MLDFFNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>LS483398.1|SQG59930.1|590315_591560_-|N-acetylmuramoyl-L-alanine-amidase
MRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRYFTANPPLARVGDVS
>LS483398.1|SQG59931.1|591631_592168_-|ADP-binding-protein
MSAPPTTLCLHLPDEAATENLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNAIVPPPTARSLPAPPPADA
>LS483398.1|SQG59932.1|592319_593711_+|fumarate-hydratase-class-II
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>LS483398.1|SQG59933.1|593727_594639_-|transporter
MSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAVYGLARHSGNGLLRELARNPLLVSTLLSLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPN
>LS483398.1|SQG59934.1|594843_595827_+|putattive-exported-protein
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD
>LS483398.1|SQG59935.1|595891_596791_-|LysR-family-transcriptional-regulator
MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATREAEILAPEVARLNQDLGSVRRLAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANNHPGLTRTSLGHTELVHLSRLPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>LS483398.1|SQG59936.1|596897_598652_+|gamma-glutamyltranspeptidase
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIEVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPRREGLALGD

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Crispr_ID: LS483398_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483398_2

767969-768062

Orphan

Consensus_repeat	Method
GTGCCTGTCCCCGCCGGGACAGGCAC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LS483398_2

>merge|LS483398|2|767969-768062|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCACCCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGCGTGCCTGTCCCCGCCGGGACAGGCAC

>LS483398|2|2|767969-768062|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCAC	CCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGC
GTGCCTGTCCCCGCCGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483398.1\|SQG60114.1\|770532_772344_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
LS483398.1\|SQG60118.1\|775145_775931_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181723
LS483398.1\|SQG60108.1\|763821_766194_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223911
LS483398.1\|SQG60117.1\|773920_775153_+\|dehydratase/racemase	unknown	unknown	gnl\|CDD\|367110
LS483398.1\|SQG60102.1\|757083_758061_+\|transposase	unknown	unknown	gnl\|CDD\|366234
LS483398.1\|SQG60103.1\|758256_759462_+\|sodium/glutamate-symport-carrier-protein	unknown	unknown	gnl\|CDD\|129314
LS483398.1\|SQG60104.1\|759464_760970_+\|cell-surface-protein	unknown	unknown	gnl\|CDD\|270238
LS483398.1\|SQG60110.1\|767339_767738_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
LS483398.1\|SQG60119.1\|775997_776969_+\|lipoprotein	unknown	unknown	gnl\|CDD\|270234
LS483398.1\|SQG60116.1\|772969_773725_+\|membrane-protein	unknown	unknown	gnl\|CDD\|223930
LS483398.1\|SQG60109.1\|766257_767208_+\|transposase	unknown	unknown	gnl\|CDD\|366234
LS483398.1\|SQG60115.1\|772340_772859_-\|Mg(2+)-transporter	unknown	unknown	gnl\|CDD\|224204
LS483398.1\|SQG60105.1\|760985_762299_-\|short-chain-fatty-acids-transporter	unknown	unknown	gnl\|CDD\|224942
LS483398.1\|SQG60111.1\|768148_768619_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
LS483398.1\|SQG60120.1\|776979_777957_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
LS483398.1\|SQG60106.1\|762489_762669_-\|membrane-protein	unknown	unknown	gnl\|CDD\|377342
LS483398.1\|SQG60112.1\|768707_769052_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|225984
LS483398.1\|SQG60113.1\|769151_770528_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
LS483398.1\|SQG60101.1\|756523_756991_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LS483398.1\|SQG60107.1\|763078_763813_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574

Protein	Function_ID	Function_description	E-value
LS483398.1\|SQG60114.1\|770532_772344_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
LS483398.1\|SQG60118.1\|775145_775931_+\|enoyl-CoA-hydratase	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	5.15941e-155
LS483398.1\|SQG60108.1\|763821_766194_-\|membrane-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
LS483398.1\|SQG60117.1\|773920_775153_+\|dehydratase/racemase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
LS483398.1\|SQG60102.1\|757083_758061_+\|transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.0826e-23
LS483398.1\|SQG60103.1\|758256_759462_+\|sodium/glutamate-symport-carrier-protein	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	1.2444e-106
LS483398.1\|SQG60104.1\|759464_760970_+\|cell-surface-protein	gnl\|CDD\|270238	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This group includes Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family and closely related proteins. TRAP transporters are ubiquitous in prokaryotes, but absent from eukaryotes. They are comprised of an SBP (substrate-binding protein) of the DctP or TAXI families and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function. The substrate-binding domain of TAXI proteins belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and tworeceptor cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.84755e-82
LS483398.1\|SQG60110.1\|767339_767738_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	1.37761e-90
LS483398.1\|SQG60119.1\|775997_776969_+\|lipoprotein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
LS483398.1\|SQG60116.1\|772969_773725_+\|membrane-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
LS483398.1\|SQG60109.1\|766257_767208_+\|transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.02206e-23
LS483398.1\|SQG60115.1\|772340_772859_-\|Mg(2+)-transporter	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.12064e-44
LS483398.1\|SQG60105.1\|760985_762299_-\|short-chain-fatty-acids-transporter	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	6.57351e-166
LS483398.1\|SQG60111.1\|768148_768619_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
LS483398.1\|SQG60120.1\|776979_777957_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.33368e-60
LS483398.1\|SQG60106.1\|762489_762669_-\|membrane-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	0.00323203
LS483398.1\|SQG60112.1\|768707_769052_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
LS483398.1\|SQG60113.1\|769151_770528_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.33957e-108
LS483398.1\|SQG60101.1\|756523_756991_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.07596e-07
LS483398.1\|SQG60107.1\|763078_763813_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	2.40573e-142

>LS483398.1|SQG60110.1|767339_767738_-|elongation-factor-G
MTRRTSIERYRNIGISAHIDAGKATTTERILFYTGITHKLGEVHEGAATMDWMEQEQGRGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQEVATVMVVLPGQ
>LS483398.1|SQG60109.1|766257_767208_+|transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>LS483398.1|SQG60108.1|763821_766194_-|membrane-protein
MNHAYNLLNLHSYPVRLRDVAKVEIGAANDRVLSRYNGRSAINIGLTRQSTANPLELSKAVRAEIVQLNQSLPAGMKLNIAYDSSVFIERSIDSVFKTIGEAIILVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMVLAIGLVVDDAIVVLENIFRHIEEGMPRKQAAFQGSREIGFAVVAMTLTLVTVYAPLAFATGRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQYSHNRWYNLIEGWLEALGRGYRRALELALRHRWTVVGVGAVVAAASGVLFSVVKSELAPIEDRGVVFGIVSAPEGATLNYTLDSMLGIEQFYAAIPEAATAQVTVGFPTVTDGTAILRLTPWEERTRRQQQIAQELQPKFASLPGVRAFPTNPPSLGQSARSKPVEFIIMSQASYPELAKLVGVFTNALRDYPGLQNIDTDLRLNTPELRVHVDRDKMADVGASVEVVGRTLESMLGGRQVTRYKDQGEQYDVIVQVVQGDRATPTDISGIYVRARDGSMVQLDNLLSVRESVSPQSLNHFNRLRAVKVDAAVAPGYALGEVLDHMHRVARDVLPNTVITDLDGQSREFRDSSGSIYLVFAMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQIGLITLVGLITKHGILIVEFANQLRDQGKAMHEAVVEASVLRLRPILMTTGAMVLGTVPLALAQGAGAESRQQIGWVLVGGLMLGTLLTLFVVPVAYSMIAAARPQGQRTGASHTGPAVVPPASE
>LS483398.1|SQG60107.1|763078_763813_-|DNA-polymerase-III-subunit-epsilon
MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPEALAVHGLTTEFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDDQGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDKAVGGACAWRAIEPLPAESGQPG
>LS483398.1|SQG60106.1|762489_762669_-|membrane-protein
MHPDTNTMLIIIAAAVALMIVGFGLRDRNLGLGLLGIGLIAALATIAYKAYITFNSFYY
>LS483398.1|SQG60105.1|760985_762299_-|short-chain-fatty-acids-transporter
MFKLMSRSAVKMVERYLPDPYVFVVLLTLVAAGAAMIIEGQTPMAVVRWWGNGFWGLLTFAMQMLLVLVTGYMLASTPLVKRMLARLASLATSAGGAIILVSVVSLAASWINWGFGLVVGALFAKQIARQVRVDYRLLVASAYSGFIIWHGGLAGSIPLTIATEGHFSADKIGIIPTGDTIFAVFNLVIVVAMFILVPLVNRLMLPDEKESVYVDPARLEEASVPASDDDKRPAARLENSRLLAWLIAAGGLAYMFDYYVVRGAGLNLNVINFSFLILAILLHGTPRRLLASLDEAIKGGAGIVIQFPFYAGIMAIMMDSGLAATLSEWFVSIASAATLPFWTFISAGIVNIFIPSGGGQWAVQSPIVISAAQALGADMPRVAMAVAWGDAWTNMLQPFWALPVLAIAGLKAKDIMGYCIIQLLVTGVIISVGLSFF
>LS483398.1|SQG60104.1|759464_760970_+|cell-surface-protein
MFIRWLILSACLLLAACSRAPDTEILQRDVGQTLAATYGPDLFDIVALRRMGSATDSTAPPGQTRRVVYYDVVLGLKKDLTLGAWDQPGAAALVSLLGAGPRSISGVKSSGNAAGDQIVAHASAIYQRDAEQWVHVAPASFTATEAPSLDTGAPPPVTRQLLQTLEQITRSVPYSASSTAQHVVQQELERSVARINGRLARLQKGYPLATGPDKGEYLAFGQALAAIGRNEQVRVIPLITGGSADNMAMLRSGAAVAALSQADIAQLAYEGKGPFESQGPFSGLRALGSLYPELVHIVVRQGDGIATVGALRGKKIALGPSGSAVRTTLETVLAAHGLQPGRDYAVIDTPAAAALPQLSEGRVDAVAQVIGTPAAPLRAALTQARLALLPLDRAAIDKLVQADPTLMALDIPANTYPSQAAAIPTVGMAALLVTTADLTRDEAAHMVDVVYRAGQDLLAAGSAQGAQVSAANAGRGLSIPLHDGAVEAFEKLGAPPLPEGR
>LS483398.1|SQG60103.1|758256_759462_+|sodium/glutamate-symport-carrier-protein
MISLTPVQSLLACCLVLVAGRILTTRIGVLSRYSIPDPIVGGLLFAVLATALDTWGGIQISLETNIKPTLLLIFFGCIGLTADLKLLARGGPRLIAFLLALIPFLVLQNAVGLGLAWLLDMHPLMGLIGGTITLVGGHGTGAAYAARFADINNIQDVMALAMTAATIGLVLGGIIGGPVAEWLIRRHKLDPRMAGKDANQVLPEVETTAEAPTATSFITSLTAVFVTVVVGTYLAGLVEDAPISLPNFLWCLATGAIIRNFGGYVGIRLDDRVSEIIGSISLSLFLGLTMMTLDLSSVVRLAGPLALMLVAQALVCALYAGWAVFRMLKRDYEAAVMAAAFCGFAMGATATAIANMQALTRRHGPAPESFIVVPVTGAFLVDILNVIVLTSLIALPFVGGM
>LS483398.1|SQG60102.1|757083_758061_+|transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHSYMVRADLAG
>LS483398.1|SQG60101.1|756523_756991_+|acetyltransferase
MRPADVEAVLRVQAAVYPASLLESAALFQNRIEIAPATCQVALDGQDLIGYLIAYPWDAGLPPALDRSLERLPGAADTWFVHDCAVLPAAQGGGVAAALLAGGRAQARRLGLRRASLVALAQAVGYWLRHGYQPLADSDALRAKLAGYGDGARYM
>LS483398.1|SQG60111.1|768148_768619_-|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>LS483398.1|SQG60112.1|768707_769052_-|Uncharacterized-protein-conserved-in-bacteria
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>LS483398.1|SQG60113.1|769151_770528_-|GntR-family-transcriptional-regulator
MTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>LS483398.1|SQG60114.1|770532_772344_+|elongation-factor-G
MASACRTGCHPAPEGEEQSETVWRQANKYGVPRIAFVNKMDRVGADFFRVQRQIVERLKGDAVPIQIPVGAEDHFEGVVDLVKMKAIIWDDASQGVRFEYRDIPPELQAQAEQWREKMIEKAAEANEALLEKYLSGQPLSEDEIKSGLRARTVANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAIIGHDERDREIERHPADDEPFSALAFKIMTDPFVGQLVFFRVYSGVVKSGDSVLNPLKSRKERLGRILQMHANERREISEVYAGDIAAAVGIKEITTGDTLTDPAHVIILERMTFPEPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREFGVEANVGKPQVAYRETIRSTVTDVEGKFVKQSGGRGQYGHVVLKLEPQEQGKGYEFVDAIKGGVVPREFIPAVDRGVRETLNTGVLAGYPVVDVKVTLVFGSYHDVDSNENAFRMAASMAFKEGMRRAKPVLLEPMMHVEIETPEDFTGNVMGDLSSRRGMVQGMEDIAGGGGKLVRAEVPLAEMFGYSTSLRSLTQGRATYSMEFKHYAEAPRQVAEQIIAARGSGAAARG
>LS483398.1|SQG60115.1|772340_772859_-|Mg(2+)-transporter
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGVIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDDKRVVAQPPP
>LS483398.1|SQG60116.1|772969_773725_+|membrane-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>LS483398.1|SQG60117.1|773920_775153_+|dehydratase/racemase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>LS483398.1|SQG60118.1|775145_775931_+|enoyl-CoA-hydratase
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSLQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>LS483398.1|SQG60119.1|775997_776969_+|lipoprotein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>LS483398.1|SQG60120.1|776979_777957_-|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR

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Crispr_ID: LS483398_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483398_3

1334392-1334486

Orphan

Consensus_repeat	Method
TAAAAGGGCACCCGCAAGGGTGTCCTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483398_3

>merge|LS483398|3|1334392-1334486|CRISPRCasFinder
TAAAAGGGCACCCGCAAGGGTGTCCTTTTATTGCGAAAAGATATCTGGAAGAAAGCCTTTTCAGAGTAAAAGGGCACCCGCAAGGGTGCCTTTTT

>LS483398|3|3|1334392-1334486|CRISPRCasFinder
TAAAAGGGCACCCGCAAGGGTGTCCTTTT	ATTGCGAAAAGATATCTGGAAGAAAGCCTTTTCAGAG
TAAAAGGGCACCCGCAAGGGTGCCTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
LS483398.1\|SQG60635.1\|1332766_1333600_-\|DMT-superfamily-permease	unknown	unknown	gnl\|CDD\|274527
LS483398.1\|SQG60631.1\|1327753_1329463_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
LS483398.1\|SQG60636.1\|1333944_1334325_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
LS483398.1\|SQG60644.1\|1341538_1342474_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
LS483398.1\|SQG60630.1\|1326692_1327757_+\|sulfate-transport-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263
LS483398.1\|SQG60629.1\|1325885_1326668_+\|sulfate-transport-system-permease	unknown	unknown	gnl\|CDD\|226665
LS483398.1\|SQG60646.1\|1343263_1346443_+\|acriflavine-resistance-protein-B	unknown	unknown	gnl\|CDD\|273335
LS483398.1\|SQG60639.1\|1336411_1337461_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|381320
LS483398.1\|SQG60628.1\|1325099_1325771_+\|sulfate-transport-system-permease	unknown	unknown	gnl\|CDD\|131194
LS483398.1\|SQG60642.1\|1340123_1340696_-\|chorismate--pyruvate-lyase	unknown	unknown	gnl\|CDD\|225703
LS483398.1\|SQG60627.1\|1324871_1325075_+\|sulfate-transport-system-permease	unknown	unknown	gnl\|CDD\|131194
LS483398.1\|SQG60637.1\|1334595_1335261_+\|hydrolase	unknown	unknown	gnl\|CDD\|239518
LS483398.1\|SQG60640.1\|1337598_1338528_-\|transposase-for-IS1663	unknown	unknown	gnl\|CDD\|376773
LS483398.1\|SQG60633.1\|1330950_1332225_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
LS483398.1\|SQG60645.1\|1342706_1343306_+\|acriflavine-resistance-protein-a	unknown	unknown	gnl\|CDD\|184990
LS483398.1\|SQG60632.1\|1329985_1330762_+\|sulfate-adenylyltransferase-subunit-1	unknown	unknown	gnl\|CDD\|225448
LS483398.1\|SQG60643.1\|1340755_1341487_+\|RNA-pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|224108
LS483398.1\|SQG60634.1\|1332378_1332759_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483398.1\|SQG60641.1\|1338767_1340051_-\|Major-Facilitator-Superfamily	unknown	unknown	gnl\|CDD\|341042
LS483398.1\|SQG60638.1\|1335356_1336307_-\|transposase	unknown	unknown	gnl\|CDD\|366234

Protein	Function_ID	Function_description	E-value
LS483398.1\|SQG60635.1\|1332766_1333600_-\|DMT-superfamily-permease	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	1.83398e-24
LS483398.1\|SQG60631.1\|1327753_1329463_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483398.1\|SQG60636.1\|1333944_1334325_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.34063e-62
LS483398.1\|SQG60645.1\|1342706_1343306_+\|acriflavine-resistance-protein-a	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	3.3817e-39
LS483398.1\|SQG60630.1\|1326692_1327757_+\|sulfate-transport-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	3.07125e-165
LS483398.1\|SQG60629.1\|1325885_1326668_+\|sulfate-transport-system-permease	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	8.42883e-141
LS483398.1\|SQG60646.1\|1343263_1346443_+\|acriflavine-resistance-protein-B	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
LS483398.1\|SQG60639.1\|1336411_1337461_+\|oxidoreductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	0
LS483398.1\|SQG60628.1\|1325099_1325771_+\|sulfate-transport-system-permease	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	7.30868e-119
LS483398.1\|SQG60642.1\|1340123_1340696_-\|chorismate--pyruvate-lyase	gnl\|CDD\|225703	COG3161, UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) [Coenzyme metabolism].	1.05194e-17
LS483398.1\|SQG60627.1\|1324871_1325075_+\|sulfate-transport-system-permease	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	4.38349e-06
LS483398.1\|SQG60637.1\|1334595_1335261_+\|hydrolase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	1.59099e-72
LS483398.1\|SQG60640.1\|1337598_1338528_-\|transposase-for-IS1663	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	2.98381e-23
LS483398.1\|SQG60633.1\|1330950_1332225_+\|radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	4.71758e-24
LS483398.1\|SQG60632.1\|1329985_1330762_+\|sulfate-adenylyltransferase-subunit-1	gnl\|CDD\|225448	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism].	4.14006e-100
LS483398.1\|SQG60643.1\|1340755_1341487_+\|RNA-pseudouridylate-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	7.73356e-72
LS483398.1\|SQG60641.1\|1338767_1340051_-\|Major-Facilitator-Superfamily	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.07713e-14
LS483398.1\|SQG60644.1\|1341538_1342474_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.16949e-67
LS483398.1\|SQG60638.1\|1335356_1336307_-\|transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.66858e-23

>LS483398.1|SQG60636.1|1333944_1334325_+|50S-ribosomal-protein-L19
MNLIAILEQEEIARLTGGNAVTEFAPGDTVVVSVNVVEGTRKRVQAFEGVVIAKRNRGLNSSFIVRKISSGEAVERTFQLYSPQIAGIEVKRRGDVRRAKLYYLRSRSGKSARIKEKLVLKKAKSA
>LS483398.1|SQG60635.1|1332766_1333600_-|DMT-superfamily-permease
MAHAAWNLLAKRAAMVGPMFVFAYGLAATILYAPWVIWVLAHDGMVWSWPVVLCILASSMLHLGYSLCLQRGYQVADLSVVYPIARGTGPLLSTMGAFTLLSEPATTTGIAGMLCVVGGVLLIATQGRLGMFRQAQAWIGVRWGVVIGLFIAAYTVVDAYGVKILLIMPVLFDWFTCATRTLMMTPHVLRRRAQYWPAMRGYWHLAIAVGVLSPLGYILVLYALRNGAPLSLVAPAREMSMMLGTLAGMFLLREKVGIGRLAGCLAILAGVVLLGSS
>LS483398.1|SQG60634.1|1332378_1332759_+|Uncharacterised-protein
MTIATTLDAATSLPTAVPGRTLGALRRLARAWAGAAVPQRKWPFPPTPPGQAQPCTPCTDSQPRSVQAVQPAQARALHAQAELSGAATQAATQVLSTKAKIIDVLLVAVWGAMIPALMWLGAAGGF
>LS483398.1|SQG60633.1|1330950_1332225_+|radical-SAM-protein
MASTEHSFSAGFGSPAAAPAALRGRGAVTNVPHRFQQADRVRVDDGWANPDYTAGSDAAALPSVAEALGQGGRRAIPIAVEGADASPNTCAQAPAPRTIVQAEEARKMLSRNDSPDIPFDVAANPYRGCEHGCVYCYARPTHAYLGYSPGLDFETRLVAKANAVAALRAELARPGYRASPINIGSATDAYQPIERTWRLTRGMLELLLQTRHPLTVVTKNALVERDLDLLQDLARQKLVTVFVSITTLDAAMARTLEPRASAPYRRLQTVRTLAQAGVPVGVLVAPVIPFINDESLEHILQEASAAGACYASYTVLRLPWEVKEVFETWLQAHFPDRAQRVLHRIEDLRNGRRNDTAFGSRMRGTGIWADLLRQRFALATRKLDLNRHRPELDTHRFVPPLEPGLPPARGRREARAQPGQLALF
>LS483398.1|SQG60632.1|1329985_1330762_+|sulfate-adenylyltransferase-subunit-1
MVAVNKMDLVDWDRAVFERIGAAYGELARRLALPAFHILPLSALHGDNVVNLSPHSPWYEGQPLLTLLEGLDLAGDGRDLPLRVPVQWVARHGGERADDFRGYAGRVASGVLRPGDEVVVQPSGVRARVQRVLAFDGELQEAVSGDSVTLILDRDVDVSRGDVLAHAQPLNPARRYLLKHGTRLTSAKISAVHTRRDIHELQEVPNADGVLHMNDIGRVSLLTREALATDPYAAIAATGAFILIDEATHQTAAAGMLE
>LS483398.1|SQG60631.1|1327753_1329463_+|sulfate-adenylyltransferase-subunit-2
MMAARPLAAIAGLTAAAAARWHDLQSLLAIIARQYPDAALASSLAAEDMVLTHAIYAGGLDLEVFTLDTGRLHTETLGVLDAVATRYGRAITVYRPDAAAVQAHVDAHGMHAFYESVALRKACCEIRKVEPLRRALAGRGAWITGQRRAQSATRGELPDEERDPVFGLYKFNPLAAWNEADVWSVIRALGIPYNPLHDQGYPSIGCEPCTRAVRPGEDVRAGRWWWESSDSKECGLHAGNRVIQIEARLPEARIATDIDNADRKETPMSAVMTRSHLDWLESEAIFILREVAAECARPALLFSGGKDSVVLLRLAEKAFRPGRFPFPLLHIDTGHNYDEVISFRDARAAELGETLLVRSVEDSIARGSVALRRETDSRNAAQAVTLLEAIEELGLDACIGGARRDEEKARAKERIFSFRDEFGQWDPKAQRPELWNLFNTRVHRGENMWVFPISNWTELDVWQYIQRERLALPSIYYSHTREVVRRKGLLVPVTRLTPPAEGETVEQLAVRFRTVGDISCTCPVASDAADPAAIIAETAVTDITERGATRMDDQTSEASMERRKREGYF
>LS483398.1|SQG60630.1|1326692_1327757_+|sulfate-transport-ATP-binding-protein
MSIEVRGLSKRFGAFRALDEVSLHIETGELVALLGPSGCGKTTLLRIIAGLESADAGSVLFAGEDATEVDVRQRQVGFVFQHYALFKHMTVFENVAFGLRVRHRSQRPSEARIRAKVLDLLGLVQLDWLADRYPAQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVTDRVVLMNAGRIEQVGSPREVWERPATPFVYGFLGDVNQLHGHATRGVWRLGEVALPAPDLPEADNQRAIAYVRPHDIDLARAGTAAPGIPVRLNHVYLAGPSAYLELARQDDQAIIEAQVPEPLFRSLGLKEGEALLAQPRRARVFAVQP
>LS483398.1|SQG60629.1|1325885_1326668_+|sulfate-transport-system-permease
MFTEALRKGWQLYLAAIVEPDAWSAIRLTLLVAAIALPVNLVFGVAAAWAVTKFQFRGKQLLITLIDLPFSVSPVVAGMVFVLLFGSQGWFGPWLQDHDWKIVYAVPGVILATLFVTFPFIARELIPLMQAQGSEEEQAALTLGASGWQIFWRVTLPNIKWGLLYGAILCNARAMGEFGAVSVVSGQVRGLTNTMTLHVEILYNEYQFAAAFAVASLLALLALVTLAAKQVVEWRNQRLSPRQAEAPVHAGALAVRPAAA
>LS483398.1|SQG60628.1|1325099_1325771_+|sulfate-transport-system-permease
MASYRLTFGASLLAALVNLVFGTIVAWVLVRYRFPGKKIVDVLVDLPFALPTAVAGIALTALYSANGWLGAPLQRWFDLKVAFTPLGIVVALIFIGVPFVVRTVQPVLEDVERELEEAAASLGAGRWQTIRRVLLPALLPALLTGFALAFARAIGEYGSVVFIAGNMPMISEITPLLIISKLEQYDYAGAAAIATVMLALSFALLLVINLLQGWQTRRGGRQP
>LS483398.1|SQG60627.1|1324871_1325075_+|sulfate-transport-system-permease
MSLAIPSGPAPTAARRQRPGVLPGFGISMGYAVLYLSLLVLVLVLVLVLVPLAALPIKSLELGWAGF
>LS483398.1|SQG60637.1|1334595_1335261_+|hydrolase
MAQPWETANQGLARVDERLLTPPELRSSLRPADHWRLDPLCAAEPRAPGREGSLVAAAVLIPLVMRADGVRVMLTQRAAHLHDHAGQVSFPGGRIEVSDATPVAAALREAQEETGLPVQQVEVLGSMPQYFTATGFAITPVVSLVQPDFELAPDAFEVAEVFEVPLSFLMDPANHRLYRAALPDGYVRQYYAMPWQRYFIWGATAGMLRNLYQTVREALPG
>LS483398.1|SQG60638.1|1335356_1336307_-|transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>LS483398.1|SQG60639.1|1336411_1337461_+|oxidoreductase
MKYRKLGHTDLDVSLIGLGTMTWGEQNTEAQAHEQLDYALAHGINLVDAAEMYPVPPKPETQGRTESCIGSWLARTGRRHEVVLASKAAGPVRDAKRPSHIRDGKTFLDRKNLTQALDASLKRLQTDYLDLYQLHWPDRTTNTFGKLAYPWVDDAHTVPIEETLEVLQDFVRAGKVRHVGLSNETPWGVARFLQAAEKHGLPKVATIQNPYNLLNRIFEIGLAEFSHREGVGLLAYSPLAMGILSGKYLDGARPEGSRLALFTRFTRYSNPQAEAAARDYVMLARDHGLAPAQMALAWVNQRPFVSSNLMGATTLAQLKENIESVEVTLSDEVLQGIEAIHARQPNPAP
>LS483398.1|SQG60640.1|1337598_1338528_-|transposase-for-IS1663
MLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG
>LS483398.1|SQG60641.1|1338767_1340051_-|Major-Facilitator-Superfamily
MTTTAESPNIRRNTRLLSCAQALGGASPAIVISMGGLVGQMLAGDPGLATLPVSLYNLGLAAGILPAAAMMRRRGRRGGYQLGALLGLLGGLLAAWGIWSGRFALFCTGTALAGLYGAYVQSYRHAVTDGVRPEHRPRAISAIMSAGLVAAVLGTNAAIWTRNLWPAAPFAGSFVSQAALALLALGVVSRLRAVPVGLAAAQAGRPLARIARTPRFIIAAAAGVVSFGLMSLVMTAAPLAMVDCGHSVAAAALGIQWHVLAMYAPSFVTGRLIERFGKLPVTALGLALMLAAAGVSLTGLSVPHFWAVLVLLGVGWNLGFIGATSHAGRLLRAARTPARPGAQRPAGIRLRGRRLVLVRPAAGPWRLVHGQSDGPARRRPAASGLARTQGARLIRRAVAAPGACHRCGKGACPRCGRGALYLSSGGD
>LS483398.1|SQG60642.1|1340123_1340696_-|chorismate--pyruvate-lyase
MTTPIPLARGWLPAAPSTLDPLRKYWLFRPGALTAGLRQLGHVRLRVLAEYPTGAPRDEADGMRIAAQSPVWVREVLMSIDGVDSVVARSLTPLRASHGVWQGMRRLLTRPLADMLYHDPGIHRSVFVCRRLAAGVPFHATAIARAPAGGPEPALWARRSAFWRAGQPLLVAECFLPAFWSLARAPVAPR
>LS483398.1|SQG60643.1|1340755_1341487_+|RNA-pseudouridylate-synthase
MEKVRISKLMSERGLCSRREADSYIERGWVRVDGVVVSELGARALPDQVITLERAAAARQTARVTILLHKPVGYVSGQAEKGYTPAVALIDARSRYAGDRAPQRFERGQLQGLAVAGRLDIDSQGLLVLTQDGRIAKKLIGEDSEVDKEYLVRVQGRLSEAGLALLNHGLSLDGKPLRPAQVRWQNADQLRFVLREGKKRQIRRMCELVGLRVVGLKRVRIGRVSLGDLPAGQWRYLRADERF
>LS483398.1|SQG60644.1|1341538_1342474_-|LysR-family-transcriptional-regulator
MNRLQGMELFVEVARTLSFGRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYFERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLDLASPEHAERVFQTCDVSIEIGDLPDSTHIARLLGVLPAHLYASPDYLARHGEPQHPDDLPRHECIQFRAGTGRVTRWPLNSGERHVEITPGNRFSVNSVSMVRNLATLGAGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVYAVTDTRMLPAKTRIFVEFLMERLSNKTLAGQNNPAFLNLR
>LS483398.1|SQG60645.1|1342706_1343306_+|acriflavine-resistance-protein-a
MKNNYLVGRGIAALSLAALTLTLAACGKEQQAAQEGGQPQVGVVTLKTQSVALSSELPGRTAAYRIAEVRPQVSGIVQKRLFTEGGEVAAGQQLYQIDPALYQAEVDSRRAALARVQAQLKTATLLVQRYKPLVDTRAVSRQAYDDAVAARDQASADAPRSRRPNGVRPHPRPPRNRPPRSKGVPAWQSFSSTGRCSPG
>LS483398.1|SQG60646.1|1343263_1346443_+|acriflavine-resistance-protein-B
MAKFFIDRPVFAWVIAIVLMMAGALSILSLPVAQYPNIAPPAISINVTYPGASAQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAVAQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQDPISRTPGVGNFQLFGAPYAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNATVIGPSRLQTPEAFGRILLKVNRDGSQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMGQITGALIGIAMVLAAVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNRTFERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQAPAGATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGAEHRAAAVAARANAKFRAELRDAQAAVFAPPAVMELGNATGFDFQLQDRAGVGHEKLLAARNQLLQEAGASPMLVAVRPNGIEDAPQYQLDIDREKARALGVSITEINNTLATAWGSSYVNDFIDRGRVKKVFVQGEASSRMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGDAMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAPALYAISLIVVFLCLAALYESWSIPTAVMLVVPLGVVGALLATMTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKEHYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGGMLTGTFLAIFFVPLFFVLTLRLFKVKRASENREDDDPHGGAQPATHGGQPQ

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Crispr_ID: LS483398_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483398_4

3792228-3792337

Orphan

Consensus_repeat	Method
TTGACTGCCAAGACGGTATCTGTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483398_4

>merge|LS483398|4|3792228-3792337|CRISPRCasFinder
TTGACTGCCAAGACGGTATCTGTCCCCGCAGGGAGGGTGCCTGTCCCCGCCGGGACAGGCACACTGCTGTACGCCATCGACGCTTGACGGCCAAGACGGTATCTGTCCCC

>LS483398|4|4|3792228-3792337|CRISPRCasFinder
TTGACTGCCAAGACGGTATCTGTCCCC	GCAGGGAGGGTGCCTGTCCCCGCCGGGACAGGCACACTGCTGTACGCCATCGACGC
TTGACGGCCAAGACGGTATCTGTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
LS483398.1\|SQG62949.1\|3797776_3799201_+\|two-component-sensor	unknown	unknown	gnl\|CDD\|236531
LS483398.1\|SQG62950.1\|3799217_3800273_-\|cytochrome-oxidase	unknown	unknown	gnl\|CDD\|376764
LS483398.1\|SQG62948.1\|3797075_3797777_+\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|181883
LS483398.1\|SQG62937.1\|3786573_3787041_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
LS483398.1\|SQG62946.1\|3794620_3795571_-\|transposase	unknown	unknown	gnl\|CDD\|366234
LS483398.1\|SQG62941.1\|3790189_3790975_+\|enoyl-(acyl-carrier-protein)-reductase	unknown	unknown	gnl\|CDD\|180789
LS483398.1\|SQG62951.1\|3800269_3801610_-\|transmembrane-cytochrome-oxidase	unknown	unknown	gnl\|CDD\|376587
LS483398.1\|SQG62932.1\|3782567_3782816_+\|desaturase	unknown	unknown	gnl\|CDD\|377224
LS483398.1\|SQG62947.1\|3795652_3796882_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|225729
LS483398.1\|SQG62944.1\|3792868_3793549_+\|Inner-membrane-protein-yebE	unknown	unknown	gnl\|CDD\|377342
LS483398.1\|SQG62934.1\|3783713_3784046_+\|3-oxoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|235866
LS483398.1\|SQG62939.1\|3787874_3788675_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
LS483398.1\|SQG62940.1\|3788685_3790095_+\|membrane-bound-lytic-murein-transglycosylase-D	unknown	unknown	gnl\|CDD\|182727
LS483398.1\|SQG62943.1\|3792338_3792731_-\|OsmC-like-protein	unknown	unknown	gnl\|CDD\|224679
LS483398.1\|SQG62936.1\|3785626_3786577_+\|transposase	unknown	unknown	gnl\|CDD\|366234
LS483398.1\|SQG62952.1\|3801725_3803489_+\|glutaminyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235424
LS483398.1\|SQG62933.1\|3782799_3783678_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
LS483398.1\|SQG62945.1\|3793553_3794534_-\|putattive-exported-protein	unknown	unknown	gnl\|CDD\|270296
LS483398.1\|SQG62935.1\|3785207_3785528_+\|dehydrogenase	unknown	unknown	gnl\|CDD\|235000
LS483398.1\|SQG62938.1\|3787083_3787854_-\|Methyltransferase-domain	unknown	unknown	gnl\|CDD\|369777

Protein	Function_ID	Function_description	E-value
LS483398.1\|SQG62949.1\|3797776_3799201_+\|two-component-sensor	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	3.78414e-42
LS483398.1\|SQG62950.1\|3799217_3800273_-\|cytochrome-oxidase	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	1.57809e-49
LS483398.1\|SQG62948.1\|3797075_3797777_+\|two-component-response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	4.05363e-90
LS483398.1\|SQG62937.1\|3786573_3787041_-\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	4.07937e-102
LS483398.1\|SQG62946.1\|3794620_3795571_-\|transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	7.3142e-23
LS483398.1\|SQG62941.1\|3790189_3790975_+\|enoyl-(acyl-carrier-protein)-reductase	gnl\|CDD\|180789	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI.	1.22848e-177
LS483398.1\|SQG62951.1\|3800269_3801610_-\|transmembrane-cytochrome-oxidase	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.21087e-123
LS483398.1\|SQG62932.1\|3782567_3782816_+\|desaturase	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	4.21234e-07
LS483398.1\|SQG62947.1\|3795652_3796882_-\|Uncharacterised-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	4.88692e-08
LS483398.1\|SQG62944.1\|3792868_3793549_+\|Inner-membrane-protein-yebE	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	5.6465e-62
LS483398.1\|SQG62934.1\|3783713_3784046_+\|3-oxoacyl-ACP-synthase	gnl\|CDD\|235866	PRK06816, PRK06816, StlD/DarB family beta-ketosynthase.	8.20524e-38
LS483398.1\|SQG62939.1\|3787874_3788675_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	2.85848e-146
LS483398.1\|SQG62940.1\|3788685_3790095_+\|membrane-bound-lytic-murein-transglycosylase-D	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	5.28635e-76
LS483398.1\|SQG62943.1\|3792338_3792731_-\|OsmC-like-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	4.86152e-16
LS483398.1\|SQG62936.1\|3785626_3786577_+\|transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.05216e-23
LS483398.1\|SQG62952.1\|3801725_3803489_+\|glutaminyl-tRNA-synthetase	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
LS483398.1\|SQG62933.1\|3782799_3783678_+\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	2.20669e-12
LS483398.1\|SQG62945.1\|3793553_3794534_-\|putattive-exported-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.19011e-129
LS483398.1\|SQG62935.1\|3785207_3785528_+\|dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	5.7267e-45
LS483398.1\|SQG62938.1\|3787083_3787854_-\|Methyltransferase-domain	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.0439e-10

>LS483398.1|SQG62941.1|3790189_3790975_+|enoyl-(acyl-carrier-protein)-reductase
MGFLAGKRILMTGVLSNRSIAYGIARACRDQGADLAFTYVGDRFKERITEFAASFGSDIVLPCDVAEDSQIDAAFAELGKRWDGLDGLVHAIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPAMAKAALPLMEGRKGSVLTLSYLGSERVVANYNTMGLAKASLEASVRYLATALGPRGIRANAISAGPIKTLAASGIKDFSSILKFVEANAPLRRNVTIEDVGNVAAFMLSDLAAGITGEITHVDAGFSTVVPGMEN
>LS483398.1|SQG62940.1|3788685_3790095_+|membrane-bound-lytic-murein-transglycosylase-D
MRFLRLLLPLFLAVLAGCAGTAKQNQAAGPSSNRYIAQDTSRTVDLTSPPSDAWDRIRRGFAIPNLNTDLAQEWTDYYASHPESVQRMAERAGKYLYFIVDEINRRGLPTELALLPFVESAYNPTALSRSQASGLWQFIPTTGQHFNLKQDWWRDERRDPIASTYAALDYLEKLFEMQGDWYLALASYNWGEGSVQRAMAKNEAAGLSTDYLSLNMPDETRNYVPKLQAIKNIIANPRKFAVVLPPVENTPYFVAVQKNRDIDIELAARLAEMPLDEFKALNPAFNRPLIRGEHAPTLLLPADRADRFNANLQNYKGDLSSWKVYHTRRGESYAAIAKRFGISEAKLRASNDIGSKRKVAADQALLIPGVPSGDGAANIQLASLSPPVGALDNVGEPRAAAAPRGKAPARVASARPNVRTHKVSSGDTLFGLARKYGTSVGALRALNNLKGNNLKLGSQLRIPGTGTRG
>LS483398.1|SQG62939.1|3787874_3788675_+|hydroxyacylglutathione-hydrolase
MQTAPPLSAVVPLPAFSDNYIWALAHEGQAAVVDPGDAAPVLRWLRATGATLRAILLTHHHPDHVGGVLELVQATGATVYGPAGETLPHCDVRLAEGDRVTLPELALALEVLDVPGHTAGHIAYTGRAAGVERVLFCGDTLFAGGCGRLFEGTPAQMLDSLEKLSALPADTQVCCAHEYTLANLRWALAVEPANRTLQQWYQRAQELRNEGTPTLPSTIGQERETNPFLRTPHAAVAHAAAVWSGRSLATPVEVFAALRQWKNNFK
>LS483398.1|SQG62938.1|3787083_3787854_-|Methyltransferase-domain
MAEETPPIVELAEWFQTPPGQYVLAWEQAQFDEAVADIFGYYAWQVGLAEPNLLRANRMPFKAWVGAGVPPPELAQGWQACVAAAPEALPFESQSVDLLVLPHAFECAEAPHLVLREVERVLVPEGRVVISGFNPWSLWGARNLMPGMEAWLPLPLSAQVALPRLKDWFKLLSFEVERGRFGCYAPACRTDKWLRRWRFMERYGQRWWGLGGAVYVVTATKKVAAMRLIGPAWKTRRKRAQAASVVVNRQADDPGR
>LS483398.1|SQG62937.1|3786573_3787041_-|ribonuclease-HI
MQNLEGSGDGQQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGDPGNERADALANQGMEAARGR
>LS483398.1|SQG62936.1|3785626_3786577_+|transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>LS483398.1|SQG62935.1|3785207_3785528_+|dehydrogenase
MCATAVDTGMEFDYIIVGAGSAGCVLANRLSADPSVRVLLLEAGGADSWHWIHIPVGYLYCIGNPRTDWCYRTQADPGLNGRSLGYPRGRVLGGSSPINGIIYMRG
>LS483398.1|SQG62934.1|3783713_3784046_+|3-oxoacyl-ACP-synthase
MPVAFDRVYLHSAGYFMPGEPVDNDAMDQYIAPLNRISGRIKNRILAENGIRQRYYAIDPEGRTRWSNAQLAAQAIQACLARGATSTCHRSRCWPAARRAAIRSCPGSPT
>LS483398.1|SQG62933.1|3782799_3783678_+|fatty-acid-desaturase
MVRPAEWLRHRRDWQSVLYLAALPALAAWQWVHGWHWALYAPMLFLTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRDVARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLGLWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWVNPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFSRRCRTHTLMRP
>LS483398.1|SQG62932.1|3782567_3782816_+|desaturase
MPLFSLFFNCVGHANYDFFPGVSYAHWFAASRRHHLHHACYQGNFGFQFTFMDRLFGTRLGADAAQGQLAAYRTRGAVGSAR
>LS483398.1|SQG62943.1|3792338_3792731_-|OsmC-like-protein
MTIQVRANTPGGLQYTATAEGHELPLAMPQPQGEGPDPHDYFDTALGGCKALTLMVYAQRKGLPLQAVDVDVVRDASEERKGIYRLTAKLKLHGDLDDAQIDELLKVADKCPLHKLMTATDIQVSTIVVE
>LS483398.1|SQG62944.1|3792868_3793549_+|Inner-membrane-protein-yebE
MSARQLLDQLLQSGQSLMQGAGAQAQQATQGGKGTFLAGLGGGALGAGALGLLLGSKKARKIGGKVAMYGGMAALGALAYRAYDQYQRNQAGGAAAPAPQTLDRLPPAPAEQHSNAVLVAMIGAAKADGHIGPDERQLLETELAKLSGDAGDRAWLEAELARPLDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQVPAAA
>LS483398.1|SQG62945.1|3793553_3794534_-|putattive-exported-protein
MTTMKSQVSILLAGCLLGAGAAAAQAPATYPDHAITIVVTFPPGGGTDLLARKLGAAMQQRLGQPVVVENRPGASGNIGARAVAEARPDGYTLLMVNSSFAVNPGVFRNLDFSPTRDFTAVINVAYVPSVIVTAEPAGDAGLPERLRQADTQSRTLAFASCGNGTPQHLAGEMLRQASGAWLQHVPYRGCGPALTDVLSRQVPLGIVTASSAAPFIHAGKLRALAVTSAQRSPLLPDVPTVAEQGAPGYELDQWHGLLAPAGTPPAVIQRLYEALSAIVAEPAMRRELESLGFNPVSEGPERFEALVQADIARFAALTARMGLRAD
>LS483398.1|SQG62946.1|3794620_3795571_-|transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS
>LS483398.1|SQG62947.1|3795652_3796882_-|Uncharacterised-protein
MLACEREHRGVSRVAVAAVLAGNMALAACAMPDPPDISRAPAGLEAGPEPAAIDTTPPETAVPRPAGRAYARAADDVARYGISVLAPASSQPVALAPVLQERAIPEPCRMLPAETGADASVHAAAPALGHDPAVPLPPAGDGADAPASMPLGCEDLFPDVPPAEPNYSFGLETDDLAGKRSVYLMTGVAQPRRPWFSSASAVPTVSYGDRSWVYRPVTGPSLAMGNVVSKAPGWGSTAPIGGVQLSDRLSPGGLLPEGQLGYSSVFGRLNNMDPAATSGAVDYGASAGSGMVRYGLTPSLTLEGQMQSAPSLTTRGVGTTYAAGELGTFQAGATQSTFDAVNAWRYRFGYNVNLADDAVTLGVATEEVGAGFGDLASFQDGGFAHRQMRNTLSAGVPISGWGTLSVKIQ
>LS483398.1|SQG62948.1|3797075_3797777_+|two-component-response-regulator
MDNPHTKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGADACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRGPSALTKDAPVSFGPFVFDPATRQLLRDDTPVKLTGGEINLLEALVRNAGKPLSRERLLALARDDDGGERNDRAIDIAILRLRRAIEEDPKQPRWIQTVWGIGYRFSP
>LS483398.1|SQG62949.1|3797776_3799201_+|two-component-sensor
MKLLRLPAPRSLRMRLILLVLGSVLLAQAATLATVSYFRHKFMEDVAIDYIATTIRTLRASLSQVPTDERAEFVRQASGNQWRLWSRSLPADARLQRWHRGPQEDEAERERMRREYERRHPPPDDIRRDLRGLVSELNERLSDGTRVALSRGPRPEIFISLAPSPSPDDAPPLREWLVIPLERLDPPVATPLIAFWVGGIGLVLLLAAWFSWHITRPLTRLADAADQLAAGQPQRVEPSGPHETRVLGERFNAMLDALAESDSVRRTLLSGLPHDLKGPLSRMWLRIEMADDPTLKEGLRKDLQDMQHMVDQFIGFVRGTDPAAYRYAPLALGEWLAERVGAWQGAGTDIRLQAPDNGALGIQADAVALGRLLDNLIGNALHHGAPPVEVSLRRDADMAVLEVSDHGPGIAPERRTEALRPFARLDDARTRTGNVGLGLALAEAIARAHGGGLELRQAPSGGLLVRITLPLAKA
>LS483398.1|SQG62950.1|3799217_3800273_-|cytochrome-oxidase
MIATLAASLGLSPDDPSFWMPLVFVGLLLLLMAAGIVLDGFDIGVGLLLQLAPSEERGRMMGLLSPWRDANEFWPLLGLGLFVSAFPFAWGGVLGKLFGPLTVMALGMVLRSVSFEFRIRARTEIKPRWIFGFWVGSLLTALGQGMVLGRIATDYQADSGYGWFAFFVGLCVMAAYALLGACWLVMRVDGELQRRAAGWARHSIRWTAAGMVAIAVTLGLANAGIFYKWSNTAHLGVAAMVWALMLLGFVAAEMLLARLPGKADGFSWLPFVLCVMLFVLMLCGLAYSFFPYLILDDMTIWDGSGALDSMRLVLAGTVIGVPVVLVFNILAYRSVFGKERRPVPLLPPPGA
>LS483398.1|SQG62951.1|3800269_3801610_-|transmembrane-cytochrome-oxidase
MNIPPLLLARAQFTASLGFLALFLAISLALAWLLLFFKLRARWSGQSGWTAAYRFWVRIFALAFVLALACAVPVLIQLGSLWSGLMDKIGNLAGPLLGYGVLSIFIVKSCFLGVMLFGQRRVSDAAHTLAVLMVAIGQLVAVGWVLALFSWLQTPDGAVLIDGRYQVYDWRAVVLNPSFGWRLGLTVLGAFLTAGFLMLGVTAMQALRRPLDDGERHAFRAGLTVALLASLLLGPVAAGMGEVTARLQPAKAAAAAGFWHSGAEPELVVFGWPSARAQANLAAVSLAGAGGRWLHRDASLGYLGLDKFSGMQPPVAFTFWSLRLALGLGLLMLAASCATLALTCRRGFDPVALPRWWLRVLSLLMFAGALGVVATWCYDLAGMQPYAVNRAVTQSEVLGPVTTPALLYSLAGHIALYAVLLAAFVGMLFHAARYGVVPVRKTGGSS
>LS483398.1|SQG62952.1|3801725_3803489_+|glutaminyl-tRNA-synthetase
MTHAPTPPAASNFLRPIIEDDLQANRFQGKLWAGKPGPAALQAQGQPDPARIRTRFPPEPNGYLHIGHAKSICVNFGLARDYGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRASRGTLTEPGTDSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRTGNAWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQYEFARLNLTYVVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTPSSIRLFCDRTAVSKSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSAPRNPHDPQAGVREFPFTRELWIEQDDFREEPPKKYFRLFPGNTVRLKYGYVVRCTGFTKDESGKVVEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTVQAWLEPGIEAVPGATWQFERLGYFTVDSKDSRPEAPVLNRIVTLRDSWQAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12608 : 71196

uncultured_Mediterranean_phage(20.0%)

transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG59371.1\|12608_13559_+\|transposase	transposase	NA	NA	NA	NA
SQG59372.1\|13555_13900_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
SQG59373.1\|14113_14488_-	merR family transcriptional regulator	NA	NA	NA	NA
SQG59374.1\|14562_15621_+	metallo-beta-lactamase family protein	NA	NA	NA	NA
SQG59375.1\|15644_16595_-\|transposase	transposase	NA	NA	NA	NA
SQG59376.1\|16658_17531_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
SQG59377.1\|17569_18814_+	isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA
SQG59378.1\|18847_19429_+	isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA
SQG59379.1\|19476_20646_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA
SQG59380.1\|20746_22354_+	carboxyltransferase subunit of acetyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	5.4e-22	57.3
SQG59381.1\|22400_24422_+	biotin carboxylase	NA	NA	NA	NA
SQG59382.1\|24450_24696_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG59383.1\|24709_25900_-	succinylornithine transaminase	A0A1V0SKB7	Klosneuvirus	4.4e-21	26.7
SQG59384.1\|26095_27061_+	lipoprotein	NA	NA	NA	NA
SQG59385.1\|27083_28223_-	low-specificity D-threonine aldolase	NA	NA	NA	NA
SQG59386.1\|28434_29397_+	TRAP transporter solute receptor TAXI family protein	NA	NA	NA	NA
SQG59387.1\|29520_31545_+	TRAP transporter, 4TM/12TM fusion protein	NA	NA	NA	NA
SQG59388.1\|31741_33985_+	heme receptor	NA	NA	NA	NA
SQG59389.1\|34263_34722_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG59390.1\|35138_35663_+\|tRNA	aminoacyl-tRNA synthetase	NA	NA	NA	NA
SQG59391.1\|35649_38271_-	membrane protein	NA	NA	NA	NA
SQG59392.1\|38334_40962_+	DNA topoisomerase III	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	6.1e-23	25.4
SQG59393.1\|41113_42178_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG59394.1\|42177_42948_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.1e-24	33.9
SQG59395.1\|42956_43790_+	ABC transporter permease	NA	NA	NA	NA
SQG59396.1\|43802_44582_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
SQG59397.1\|44655_46089_+	aldehyde dehydrogenase	NA	NA	NA	NA
SQG59398.1\|46116_46875_+	alcohol dehydrogenase	NA	NA	NA	NA
SQG59399.1\|46930_48772_-	acetolactate synthase large subunit	E4WLQ6	Ostreococcus_tauri_virus	2.2e-59	30.4
SQG59400.1\|48874_49351_+	AsnC family transcriptional regulator	NA	NA	NA	NA
SQG59401.1\|49367_50288_-	membrane protein	NA	NA	NA	NA
SQG59402.1\|50394_50895_+	Predicted restriction endonuclease	NA	NA	NA	NA
SQG59403.1\|51268_51961_+	3,4-dihydroxy-2-butanone 4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.3e-36	41.6
SQG59404.1\|52269_53220_+\|transposase	transposase	NA	NA	NA	NA
SQG59405.1\|53216_56990_-	B12-dependent methionine synthase	A0A140XBC7	Dickeya_phage	8.6e-10	50.8
SQG59406.1\|57326_59216_+	outer membrane protein	A0A0P0I887	Acinetobacter_phage	7.6e-07	30.8
SQG59407.1\|59227_60121_+	periplasmic binding protein	NA	NA	NA	NA
SQG59408.1\|60224_61022_+	thiazole biosynthesis protein	NA	NA	NA	NA
SQG59409.1\|61018_61870_+	phosphomethylpyrimidine kinase	NA	NA	NA	NA
SQG59410.1\|61931_62612_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.5e-15	34.8
SQG59411.1\|62615_62975_+	outer membrane protein	NA	NA	NA	NA
SQG59412.1\|62999_63935_+	outer membrane protein	NA	NA	NA	NA
SQG59413.1\|63955_64444_-	cytidylyltransferase	A0A1B1IUK5	uncultured_Mediterranean_phage	1.6e-17	34.1
SQG59414.1\|64812_65742_+\|transposase	transposase for IS1663	NA	NA	NA	NA
SQG59415.1\|65933_67037_+	membrane protein	NA	NA	NA	NA
SQG59416.1\|67123_67888_+	L-proline 4-hydroxylase	NA	NA	NA	NA
SQG59417.1\|68009_69200_+	potassium channel protein	NA	NA	NA	NA
SQG59418.1\|69196_70147_-\|transposase	transposase	NA	NA	NA	NA
SQG59419.1\|70245_71196_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

232934 : 264561

Moraxella_phage(50.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG59589.1\|232934_233390_+\|transposase	transposase	NA	NA	NA	NA
SQG59590.1\|233608_234589_+	putattive exported protein	NA	NA	NA	NA
SQG59591.1\|234855_235665_+	pertussis toxin subunit 1	NA	NA	NA	NA
SQG59592.1\|235704_236385_+	pertussis toxin subunit 2	NA	NA	NA	NA
SQG59593.1\|236378_236837_+	pertussis toxin subunit 4	NA	NA	NA	NA
SQG59594.1\|236848_237211_+	pertussis toxin subunit 5	NA	NA	NA	NA
SQG59595.1\|237293_237977_+	toxin subunit 3	NA	NA	NA	NA
SQG59596.1\|238032_238341_+	pertussis toxin transport protein	NA	NA	NA	NA
SQG59597.1\|238359_238674_+	pertussis toxin transport protein	NA	NA	NA	NA
SQG59598.1\|238670_241145_+	secretion system protein	NA	NA	NA	NA
SQG59599.1\|241152_242544_+	TrbL/VirB6 plasmid conjugal transfer protein	NA	NA	NA	NA
SQG59600.1\|242540_242726_+	secretion system protein	NA	NA	NA	NA
SQG59601.1\|242704_243406_+	secretion system protein	NA	NA	NA	NA
SQG59602.1\|243402_244224_+	secretion system protein	NA	NA	NA	NA
SQG59603.1\|244204_245329_+	secretion system protein	NA	NA	NA	NA
SQG59604.1\|245321_246341_+	secretion system protein	NA	NA	NA	NA
SQG59605.1\|246546_247572_-	regulatory protein	NA	NA	NA	NA
SQG59606.1\|247579_248473_+	AraC family regulatory protein	NA	NA	NA	NA
SQG59607.1\|248555_248930_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG59608.1\|248907_250317_+	membrane protein	NA	NA	NA	NA
SQG59609.1\|250309_251692_+\|tRNA	tRNA modification GTPase TrmE	A0A0R6PHS5	Moraxella_phage	9.9e-57	38.9
SQG59610.1\|252026_253631_+	extracellular solute-binding protein	NA	NA	NA	NA
SQG59611.1\|253753_254680_+	transport system permease	NA	NA	NA	NA
SQG59612.1\|254690_255617_+	transport system permease	NA	NA	NA	NA
SQG59613.1\|255624_256011_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
SQG59614.1\|256007_256958_-\|transposase	IS1002 transposase	NA	NA	NA	NA
SQG59615.1\|257044_257995_-\|transposase	transposase	NA	NA	NA	NA
SQG59616.1\|258164_259391_+	exodeoxyribonuclease V subunit gamma, fragment	NA	NA	NA	NA
SQG59617.1\|259590_260457_+	Predicted ATPase (AAA+ superfamily)	NA	NA	NA	NA
SQG59618.1\|260449_261412_+	thiamine-phosphate pyrophosphorylase	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	1.9e-06	53.4
SQG59619.1\|261512_262463_+\|transposase	IS1002 transposase	NA	NA	NA	NA
SQG59620.1\|262561_263512_+\|transposase	transposase	NA	NA	NA	NA
SQG59621.1\|263610_264561_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

362155 : 394370

Synechococcus_phage(50.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG59705.1\|362155_363106_-\|transposase	transposase	NA	NA	NA	NA
SQG59706.1\|363187_363487_-	acyl-CoA transferase	NA	NA	NA	NA
SQG59707.1\|363547_363976_-	Predicted nucleic-acid-binding protein containing a Zn-ribbon	NA	NA	NA	NA
SQG59708.1\|364014_365226_-	putative thiolase	NA	NA	NA	NA
SQG59709.1\|365237_365735_-	MaoC family protein	NA	NA	NA	NA
SQG59710.1\|365942_366878_-	putative transcriptional regulator	NA	NA	NA	NA
SQG59711.1\|367051_367879_+	enoyl-CoA hydratase	NA	NA	NA	NA
SQG59712.1\|367921_369343_+	catabolic enzyme	NA	NA	NA	NA
SQG59713.1\|369498_370449_+\|transposase	transposase	NA	NA	NA	NA
SQG59714.1\|370547_371498_+\|transposase	transposase	NA	NA	NA	NA
SQG59715.1\|371494_372685_-	transporter	NA	NA	NA	NA
SQG59716.1\|372871_373846_+\|tRNA	glycyl-tRNA synthetase subunit alpha	NA	NA	NA	NA
SQG59717.1\|373847_375986_+\|tRNA	glycyl-tRNA synthetase subunit beta	NA	NA	NA	NA
SQG59718.1\|375982_376522_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
SQG59719.1\|376525_377254_+	acyltransferase	NA	NA	NA	NA
SQG59720.1\|377240_378134_+	Protein of uncharacterised function DUF45	NA	NA	NA	NA
SQG59721.1\|378204_378600_+	lactoylglutathione lyase	NA	NA	NA	NA
SQG59722.1\|378609_379140_+	peptide deformylase	E3SLL2	Synechococcus_phage	3.7e-12	35.4
SQG59723.1\|379268_379568_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQG59724.1\|379585_380536_+\|transposase	transposase	NA	NA	NA	NA
SQG59725.1\|380526_380817_-	lipase	NA	NA	NA	NA
SQG59726.1\|381146_381671_+	Uncharacterised protein	NA	NA	NA	NA
SQG59727.1\|381642_381879_-	transcriptional regulator	NA	NA	NA	NA
SQG59728.1\|382006_382900_+	auxin efflux carrier	NA	NA	NA	NA
SQG59729.1\|382903_383353_-	malate/L-lactate dehydrogenase	NA	NA	NA	NA
SQG59730.1\|384069_385317_+	homoserine O-acetyltransferase	NA	NA	NA	NA
SQG59731.1\|385313_385928_+	methionine biosynthesis protein MetW	NA	NA	NA	NA
SQG59732.1\|386063_387014_+\|transposase	transposase	NA	NA	NA	NA
SQG59733.1\|387101_388313_+	integral membrane signal transducer protein	NA	NA	NA	NA
SQG59734.1\|388424_389150_+	outer membrane porin protein	NA	NA	NA	NA
SQG59735.1\|389172_389487_+	outer membrane porin protein	NA	NA	NA	NA
SQG59736.1\|389544_390279_-	aspartate/glutamate racemase	NA	NA	NA	NA
SQG59737.1\|390284_390875_-	glutamate/aspartate transport ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-20	33.6
SQG59738.1\|390899_391589_-	glutamate/aspartate transport system permease	NA	NA	NA	NA
SQG59739.1\|391585_392347_-	glutamate/aspartate transport system permease	NA	NA	NA	NA
SQG59740.1\|392426_393326_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG59741.1\|393419_394370_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

399395 : 451883

Escherichia_phage(22.22%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG59747.1\|399395_399977_-\|protease	intracellular protease, PfpI family	NA	NA	NA	NA
SQG59748.1\|400410_401469_-	oxidoreductase	NA	NA	NA	NA
SQG59749.1\|401503_402775_-	integral membrane protein	NA	NA	NA	NA
SQG59750.1\|403404_404586_-	substrate-binding protein	NA	NA	NA	NA
SQG59751.1\|405007_405958_+\|transposase	transposase	NA	NA	NA	NA
SQG59752.1\|406063_406366_+\|transposase	transposase	NA	NA	NA	NA
SQG59753.1\|407558_409466_+	heat shock protein	A0A1B1ISV4	uncultured_Mediterranean_phage	1.1e-117	37.2
SQG59754.1\|409627_410248_-	glutathione S-transferase	NA	NA	NA	NA
SQG59755.1\|410279_410861_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.7e-05	54.3
SQG59756.1\|410949_411201_-	Uncharacterised protein	NA	NA	NA	NA
SQG59757.1\|411202_412045_-	cytochrome assembly protein	NA	NA	NA	NA
SQG59758.1\|412150_413560_+	signal recognition particle protein	NA	NA	NA	NA
SQG59759.1\|413556_414507_-\|transposase	transposase	NA	NA	NA	NA
SQG59760.1\|414635_415526_+\|transposase	IS1002 transposase	NA	NA	NA	NA
SQG59761.1\|415522_417397_-	lipopolysaccharide biosynthesis protein	A0A2P1ELS8	Moumouvirus	2.0e-23	26.9
SQG59762.1\|417445_418120_-	membrane protein	NA	NA	NA	NA
SQG59763.1\|418086_418758_-	membrane protein	NA	NA	NA	NA
SQG59764.1\|418744_419449_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
SQG59765.1\|419445_420504_-	glycosyl transferase family protein	NA	NA	NA	NA
SQG59766.1\|420813_421407_-	sugar transferase	NA	NA	NA	NA
SQG59767.1\|421403_422591_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
SQG59768.1\|422653_423913_-	glycosyl transferase family protein	NA	NA	NA	NA
SQG59769.1\|423936_425025_-	UDP-N-acetylglucosamine 2-epimerase	A0A0N9R0B2	Chrysochromulina_ericina_virus	4.8e-46	36.3
SQG59770.1\|425032_426133_-	lipopolysaccharide biosynthesis protein	A0A2K9L0G1	Tupanvirus	3.3e-31	29.7
SQG59771.1\|426136_426712_-	acetyltransferase	NA	NA	NA	NA
SQG59772.1\|426715_427768_-	oxidoreductase	NA	NA	NA	NA
SQG59773.1\|427898_428906_+	heptosyltransferase	NA	NA	NA	NA
SQG59774.1\|428907_430194_+	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA
SQG59775.1\|430210_430366_-	Uncharacterised protein	NA	NA	NA	NA
SQG59776.1\|430390_431194_-	Bvg accessory factor	NA	NA	NA	NA
SQG59777.1\|431190_432033_-	biotin protein ligase	NA	NA	NA	NA
SQG59778.1\|432131_433262_+	integral membrane protein	NA	NA	NA	NA
SQG59779.1\|433261_434101_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.1e-21	32.4
SQG59780.1\|434254_434479_-	Uncharacterised protein	NA	NA	NA	NA
SQG59781.1\|434811_435033_+	Uncharacterised protein	NA	NA	NA	NA
SQG59782.1\|435039_435636_+	ABC-type uncharacterized transport system, auxiliary component	NA	NA	NA	NA
SQG59783.1\|435665_436319_+	Predicted hydrolase of the alpha/beta-hydrolase fold	NA	NA	NA	NA
SQG59784.1\|436529_437708_+	penicillin-binding protein	B6DZZ7	Stx2-converting_phage	5.8e-66	40.5
SQG59785.1\|437788_438655_+	class IV aminotransferase	NA	NA	NA	NA
SQG59786.1\|438730_439006_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG59787.1\|439013_439676_+	lipoate-protein ligase B	NA	NA	NA	NA
SQG59788.1\|439737_440739_+	lipoic acid synthetase	NA	NA	NA	NA
SQG59789.1\|440753_441302_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.7e-47	53.4
SQG59790.1\|441359_442256_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
SQG59791.1\|442252_443314_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.6e-78	44.8
SQG59792.1\|443349_444300_-\|transposase	transposase	NA	NA	NA	NA
SQG59793.1\|444398_444938_-	amino acid efflux protein	NA	NA	NA	NA
SQG59794.1\|445199_446393_+	cystathionine beta-lyase	NA	NA	NA	NA
SQG59795.1\|446474_447104_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA
SQG59796.1\|447165_447849_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG59797.1\|447858_449541_-\|tRNA	arginyl-tRNA synthetase	NA	NA	NA	NA
SQG59798.1\|449828_450176_+	Domain of uncharacterised function (DUF1840)	NA	NA	NA	NA
SQG59799.1\|450266_450584_+	Uncharacterised protein	NA	NA	NA	NA
SQG59800.1\|450953_451883_+\|transposase	transposase for IS1663	NA	NA	NA	NA

DBSCAN-SWA_5

500816 : 561339

Planktothrix_phage(11.11%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG59849.1\|500816_501767_-\|transposase	transposase	NA	NA	NA	NA
SQG59850.1\|501953_503204_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.1e-20	33.7
SQG59851.1\|503210_504113_-	membrane protein	NA	NA	NA	NA
SQG59852.1\|504090_504720_-	LemA protein	NA	NA	NA	NA
SQG59853.1\|505002_506433_+	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.8e-44	29.8
SQG59854.1\|506466_507096_+	amino acid efflux protein	NA	NA	NA	NA
SQG59855.1\|507144_508752_+	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	9.3e-14	37.8
SQG59856.1\|508788_509460_+	Uncharacterised protein	NA	NA	NA	NA
SQG59857.1\|509541_510018_-	bacterioferritin	NA	NA	NA	NA
SQG59858.1\|510224_511175_+\|transposase	transposase	NA	NA	NA	NA
SQG59859.1\|511171_511645_-	two-component response regulator	NA	NA	NA	NA
SQG59860.1\|512290_512818_+	lipoprotein	NA	NA	NA	NA
SQG59861.1\|512909_513725_+	lipoprotein	NA	NA	NA	NA
SQG59862.1\|513785_514520_+	rhodanese superfamily protein	NA	NA	NA	NA
SQG59863.1\|514557_516636_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SHR2	Klosneuvirus	1.5e-27	23.6
SQG59864.1\|516885_517158_-	Uncharacterised protein	NA	NA	NA	NA
SQG59865.1\|517259_518345_+	iron sulfur binding protein	NA	NA	NA	NA
SQG59866.1\|518348_520253_+	surface antigen	NA	NA	NA	NA
SQG59867.1\|520249_523936_+	Family of uncharacterised function (DUF490)	NA	NA	NA	NA
SQG59868.1\|523996_524560_+	deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	2.6e-72	75.3
SQG59869.1\|524567_524990_-	PhnB protein	NA	NA	NA	NA
SQG59870.1\|525017_525437_-	lyase	NA	NA	NA	NA
SQG59871.1\|525465_525813_-	acetyltransferase	NA	NA	NA	NA
SQG59872.1\|526086_526536_+	Uncharacterised protein	NA	NA	NA	NA
SQG59873.1\|526690_528961_+	orn/arg/lys decarboxylase	NA	NA	NA	NA
SQG59874.1\|529036_530242_+	tricarballylate dehydrogenase	NA	NA	NA	NA
SQG59875.1\|530340_531291_+\|transposase	transposase	NA	NA	NA	NA
SQG59876.1\|531393_532029_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.8e-83	73.8
SQG59877.1\|532025_532919_+	metal transporter	NA	NA	NA	NA
SQG59878.1\|533313_534414_+	glycine cleavage system T protein	NA	NA	NA	NA
SQG59879.1\|534495_534870_+	glycine cleavage system H protein	NA	NA	NA	NA
SQG59880.1\|534929_537794_+	glycine cleavage system P protein	E3SN07	Prochlorococcus_phage	1.2e-261	51.4
SQG59881.1\|537938_538679_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQG59882.1\|538748_539960_+	acyl-CoA transferase	NA	NA	NA	NA
SQG59883.1\|539991_540957_+	putattive exported protein	NA	NA	NA	NA
SQG59884.1\|540974_541472_+	enoyl-CoA hydratase	NA	NA	NA	NA
SQG59885.1\|541570_542521_+\|transposase	transposase	NA	NA	NA	NA
SQG59886.1\|542677_543001_+	phosphate starvation-inducible protein	NA	NA	NA	NA
SQG59887.1\|543105_544146_-	Putative cyclase	NA	NA	NA	NA
SQG59888.1\|544151_544931_-	3-oxoadipate enol-lactone hydrolase	NA	NA	NA	NA
SQG59889.1\|544976_545273_-	YciI-like protein	NA	NA	NA	NA
SQG59890.1\|545298_545574_-	methylmuconolactone isomerase	NA	NA	NA	NA
SQG59891.1\|545630_546275_-	3-oxoadipate CoA-transferase subunit B	NA	NA	NA	NA
SQG59892.1\|546274_546961_-	3-oxoadipate CoA-transferase subunit A	NA	NA	NA	NA
SQG59893.1\|547159_547942_+	transcriptional regulator	NA	NA	NA	NA
SQG59894.1\|547992_548718_-	short-chain dehydrogenase	NA	NA	NA	NA
SQG59895.1\|548749_550099_-	short-chain fatty acids transporter	NA	NA	NA	NA
SQG59896.1\|550210_551143_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
SQG59897.1\|551600_554396_-\|protease	autotransporter subtilisin-like protease	NA	NA	NA	NA
SQG59898.1\|554989_557833_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
SQG59899.1\|558003_558723_+	exsB protein	A0A0A0RPC6	Escherichia_phage	8.0e-50	43.9
SQG59900.1\|558761_559310_-	acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	1.2e-21	41.7
SQG59901.1\|559464_560364_+	hydrolase	NA	NA	NA	NA
SQG59902.1\|560388_561339_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

569271 : 621912

Bacillus_phage(22.22%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG59909.1\|569271_570222_+\|transposase	transposase	NA	NA	NA	NA
SQG59910.1\|570308_571259_+\|transposase	IS1002 transposase	NA	NA	NA	NA
SQG59911.1\|571255_572206_-\|transposase	transposase	NA	NA	NA	NA
SQG59912.1\|572304_573102_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
SQG59913.1\|573207_573924_-	Metallo-beta-lactamase superfamily	NA	NA	NA	NA
SQG59914.1\|574051_574462_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
SQG59915.1\|574516_574627_+	oxidoreductase	NA	NA	NA	NA
SQG59916.1\|574711_575467_+	oxidoreductase	D2K0C8	Staphylococcus_phage	4.6e-32	55.0
SQG59917.1\|575483_576197_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQG59918.1\|576270_577314_-	solute-binding periplasmic protein	NA	NA	NA	NA
SQG59919.1\|577484_579587_+	TRAP-type C4-dicarboxylate transport system protein	NA	NA	NA	NA
SQG59920.1\|580140_580971_+	catabolic enzyme	NA	NA	NA	NA
SQG59921.1\|580997_581954_+	lipoprotein	NA	NA	NA	NA
SQG59922.1\|581972_582464_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA
SQG59923.1\|582460_583816_-	poly(A) polymerase	A0A1B1IVF3	uncultured_Mediterranean_phage	3.4e-25	36.8
SQG59924.1\|583816_584515_-	Phosphoserine phosphatase	NA	NA	NA	NA
SQG59925.1\|584511_585213_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
SQG59926.1\|585465_586515_+	phosphoribosylaminoimidazole synthetase	Q58MH8	Prochlorococcus_phage	5.6e-68	43.6
SQG59927.1\|586620_587562_-\|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	NA	NA	NA	NA
SQG59928.1\|587558_589448_-	DNA mismatch repair protein	A0A1B2LRQ5	Wolbachia_phage	3.3e-79	32.8
SQG59929.1\|589534_590173_+	membrane protein	NA	NA	NA	NA
SQG59930.1\|590315_591560_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	4.1e-17	30.3
SQG59931.1\|591631_592168_-	ADP-binding protein	NA	NA	NA	NA
SQG59932.1\|592319_593711_+	fumarate hydratase class II	NA	NA	NA	NA
SQG59933.1\|593727_594639_-	transporter	NA	NA	NA	NA
SQG59934.1\|594843_595827_+	putattive exported protein	NA	NA	NA	NA
SQG59935.1\|595891_596791_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG59936.1\|596897_598652_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA
SQG59937.1\|598659_599784_-	acyl-CoA transferase	NA	NA	NA	NA
SQG59938.1\|599797_600778_-	putattive exported protein	NA	NA	NA	NA
SQG59939.1\|600813_601491_-	oxidoreductase	NA	NA	NA	NA
SQG59940.1\|601508_602459_+\|transposase	transposase	NA	NA	NA	NA
SQG59941.1\|602473_602845_+	tonb-dependent siderophore receptor	NA	NA	NA	NA
SQG59942.1\|602934_603564_+	transcriptional regulator	NA	NA	NA	NA
SQG59943.1\|603689_605267_+	cytochrome D ubiquinol oxidase subunit I	NA	NA	NA	NA
SQG59944.1\|605282_606437_+	cytochrome D ubiquinol oxidase subunit II	NA	NA	NA	NA
SQG59945.1\|606450_606576_+	Predicted outer membrane lipoprotein	NA	NA	NA	NA
SQG59946.1\|606572_608324_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.4e-09	23.8
SQG59947.1\|608320_610000_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.6e-16	27.6
SQG59948.1\|610062_610611_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.3e-28	43.1
SQG59949.1\|610623_610749_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG59950.1\|610721_611510_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG59951.1\|611753_612032_+	Uncharacterised protein	NA	NA	NA	NA
SQG59952.1\|612241_613096_+	outer membrane porin	NA	NA	NA	NA
SQG59953.1\|613075_614026_-\|transposase	transposase	NA	NA	NA	NA
SQG59954.1\|614303_614465_+	Uncharacterised protein	NA	NA	NA	NA
SQG59955.1\|615131_615581_-	stringent starvation protein B	NA	NA	NA	NA
SQG59956.1\|615590_616202_-	stringent starvation protein	NA	NA	NA	NA
SQG59957.1\|616360_617209_-	cytochrome C1	NA	NA	NA	NA
SQG59958.1\|617234_618617_-	cytochrome B	NA	NA	NA	NA
SQG59959.1\|618681_619377_-	ubiquinol-cytochrome C reductase iron-sulfur subunit	NA	NA	NA	NA
SQG59960.1\|619462_619921_+	large conductance mechanosensitive channel protein	NA	NA	NA	NA
SQG59961.1\|619945_620722_-	metal-binding protein	NA	NA	NA	NA
SQG59962.1\|620742_621912_+\|protease	protease	W5SAB9	Pithovirus	1.2e-07	31.2

DBSCAN-SWA_7

726792 : 784301

Orpheovirus(11.11%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG60071.1\|726792_727743_-\|transposase	transposase	NA	NA	NA	NA
SQG60072.1\|727912_728797_+	reductase	NA	NA	NA	NA
SQG60073.1\|728793_729042_+	glutaredoxin	NA	NA	NA	NA
SQG60074.1\|729038_730244_+	dehydratase/racemase	NA	NA	NA	NA
SQG60075.1\|730316_731312_-	lipoprotein	NA	NA	NA	NA
SQG60076.1\|731334_732555_-	dehydratase/racemase	NA	NA	NA	NA
SQG60077.1\|732551_733196_-	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily	NA	NA	NA	NA
SQG60078.1\|733192_733513_-	Uncharacterised protein	NA	NA	NA	NA
SQG60079.1\|733473_734826_-	sulfurtransferase	NA	NA	NA	NA
SQG60080.1\|734926_735736_-	IclR family transcriptional regulator	NA	NA	NA	NA
SQG60081.1\|736040_736994_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	5.6e-59	42.5
SQG60082.1\|737092_738076_+\|transposase	transposase	NA	NA	NA	NA
SQG60083.1\|738002_738704_-	lipoprotein	NA	NA	NA	NA
SQG60084.1\|738752_739523_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
SQG60085.1\|739519_740698_-	CAIB/BAIF family protein	NA	NA	NA	NA
SQG60086.1\|740865_742572_-	thiamine pyrophosphate enzyme	NA	NA	NA	NA
SQG60087.1\|742568_743465_-	LysR family regulatory protein	NA	NA	NA	NA
SQG60088.1\|743505_745107_-	sulfurtransferase	NA	NA	NA	NA
SQG60089.1\|745144_746131_-	putattive exported protein	NA	NA	NA	NA
SQG60090.1\|746205_746805_-	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily	NA	NA	NA	NA
SQG60091.1\|747265_748246_-	lipoprotein	NA	NA	NA	NA
SQG60092.1\|748321_749272_-\|transposase	transposase	NA	NA	NA	NA
SQG60093.1\|749438_750275_+	DMT superfamily permease	NA	NA	NA	NA
SQG60094.1\|750271_750931_+	amino acid efflux protein	NA	NA	NA	NA
SQG60095.1\|751020_751944_+	lipoprotein	A0A1C9C5K3	Heterosigma_akashiwo_virus	4.8e-07	27.2
SQG60096.1\|751949_752405_-	Predicted membrane protein	NA	NA	NA	NA
SQG60097.1\|752401_753319_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG60098.1\|753337_753733_+	bactoprenol-linked glucose translocase	NA	NA	NA	NA
SQG60099.1\|753692_755312_-	4-amino-4-deoxy-l-arabinose lipid A transferase	NA	NA	NA	NA
SQG60100.1\|755308_756361_-	glycosyl transferase family protein	I1TED8	Salmonella_phage	2.8e-59	40.5
SQG60101.1\|756523_756991_+	acetyltransferase	NA	NA	NA	NA
SQG60102.1\|757083_758061_+\|transposase	transposase	NA	NA	NA	NA
SQG60103.1\|758256_759462_+	sodium/glutamate symport carrier protein	NA	NA	NA	NA
SQG60104.1\|759464_760970_+	cell surface protein	NA	NA	NA	NA
SQG60105.1\|760985_762299_-	short-chain fatty acids transporter	NA	NA	NA	NA
SQG60106.1\|762489_762669_-	membrane protein	NA	NA	NA	NA
SQG60107.1\|763078_763813_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.4e-41	43.8
SQG60108.1\|763821_766194_-	membrane protein	NA	NA	NA	NA
SQG60109.1\|766257_767208_+\|transposase	transposase	NA	NA	NA	NA
SQG60110.1\|767339_767738_-	elongation factor G	E4ZFJ7	Streptococcus_phage	9.0e-19	44.3
SQG60111.1\|768148_768619_-	universal stress protein	NA	NA	NA	NA
SQG60112.1\|768707_769052_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG60113.1\|769151_770528_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQG60114.1\|770532_772344_+	elongation factor G	A0A2K9L2P9	Tupanvirus	1.7e-24	24.9
SQG60115.1\|772340_772859_-	Mg(2+) transporter	G3MA03	Bacillus_virus	2.1e-12	38.9
SQG60116.1\|772969_773725_+	membrane protein	A0A0R6PEZ3	Moraxella_phage	2.9e-42	40.8
SQG60117.1\|773920_775153_+	dehydratase/racemase	NA	NA	NA	NA
SQG60118.1\|775145_775931_+	enoyl-CoA hydratase	NA	NA	NA	NA
SQG60119.1\|775997_776969_+	lipoprotein	NA	NA	NA	NA
SQG60120.1\|776979_777957_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG60121.1\|778082_779255_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQG60122.1\|779281_780310_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQG60123.1\|780375_781569_+	thiolase	NA	NA	NA	NA
SQG60124.1\|781617_782823_-	fatty acid CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.4e-22	25.6
SQG60125.1\|783350_784301_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_8

955687 : 1057200

110

Pseudomonas_phage(14.29%)

terminase,head,transposase,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG60286.1\|955687_956638_+\|transposase	transposase	NA	NA	NA	NA
SQG60287.1\|956733_956892_+	amino acid efflux protein	NA	NA	NA	NA
SQG60288.1\|957375_957720_+	Uncharacterised protein	NA	NA	NA	NA
SQG60289.1\|957777_958380_+	Protein of uncharacterised function (DUF2946)	NA	NA	NA	NA
SQG60290.1\|958397_958799_-	membrane protein	NA	NA	NA	NA
SQG60291.1\|958914_959826_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG60292.1\|959822_960404_+	NUDIX hydrolase	NA	NA	NA	NA
SQG60293.1\|960330_961131_-	Uncharacterised protein	NA	NA	NA	NA
SQG60294.1\|961198_961933_+\|tRNA	arginyl-tRNA-protein transferase	NA	NA	NA	NA
SQG60295.1\|961973_963023_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
SQG60296.1\|963170_963749_-	granule-associated protein (phasin)	NA	NA	NA	NA
SQG60297.1\|964135_965113_+	putattive exported protein	NA	NA	NA	NA
SQG60298.1\|965206_969562_-	dermonecrotic toxin	NA	NA	NA	NA
SQG60299.1\|969801_970650_-	IclR family transcriptional regulator	NA	NA	NA	NA
SQG60300.1\|970808_971621_-	CinA-like protein	NA	NA	NA	NA
SQG60301.1\|971676_972627_-\|transposase	transposase	NA	NA	NA	NA
SQG60302.1\|972725_973526_-	inner membrane protein	NA	NA	NA	NA
SQG60303.1\|973587_973971_+	thioredoxin-like protein	NA	NA	NA	NA
SQG60304.1\|973982_975416_-	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-52	34.4
SQG60305.1\|975622_975952_-	inner membrane protein	NA	NA	NA	NA
SQG60306.1\|975954_976704_-	inner membrane protein	NA	NA	NA	NA
SQG60307.1\|976886_977807_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
SQG60308.1\|977853_978066_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG60309.1\|978088_978511_+	Uncharacterised protein	NA	NA	NA	NA
SQG60310.1\|978527_979628_+	putative hydrolase	NA	NA	NA	NA
SQG60311.1\|979724_981242_-	exported peptidase	NA	NA	NA	NA
SQG60312.1\|981317_982157_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	1.1e-66	48.9
SQG60313.1\|982178_983051_-	inner membrane protein	NA	NA	NA	NA
SQG60314.1\|983141_984236_-	outer membrane porin protein OmpQ	NA	NA	NA	NA
SQG60315.1\|984529_985480_-\|transposase	transposase	NA	NA	NA	NA
SQG60316.1\|985608_986496_+\|transposase	IS1002 transposase	NA	NA	NA	NA
SQG60317.1\|986579_986939_-	Uncharacterised protein	NA	NA	NA	NA
SQG60318.1\|987320_988358_-	inner membrane protein	NA	NA	NA	NA
SQG60319.1\|988674_990015_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
SQG60320.1\|990024_990477_-	inner membrane protein	NA	NA	NA	NA
SQG60321.1\|990573_991755_+	monooxygenase	NA	NA	NA	NA
SQG60322.1\|991820_992846_+\|tRNA	tRNA-dihydrouridine synthase B	NA	NA	NA	NA
SQG60323.1\|992886_993126_+	DNA-binding protein	NA	NA	NA	NA
SQG60324.1\|993195_994785_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-65	47.2
SQG60325.1\|994784_995333_+	crossover junction endodeoxyribonuclease	NA	NA	NA	NA
SQG60326.1\|995413_995986_+	holliday junction DNA helicase	NA	NA	NA	NA
SQG60327.1\|996004_996916_-	NADH dehydrogenase	NA	NA	NA	NA
SQG60328.1\|996989_997958_-	serine/threonine dehydratase	NA	NA	NA	NA
SQG60329.1\|998080_999154_+	holliday junction DNA helicase	A0A127AWE7	Bacillus_phage	2.3e-08	25.7
SQG60330.1\|999158_1000979_-	ATP-dependent DNA helicase	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	3.1e-74	35.3
SQG60331.1\|1001055_1002006_-\|transposase	transposase	NA	NA	NA	NA
SQG60332.1\|1002563_1003214_+	carbonic anhydrase	NA	NA	NA	NA
SQG60333.1\|1003235_1004654_-	amidase	NA	NA	NA	NA
SQG60334.1\|1004723_1005464_-	putative branched-chain amino acid binding protein	NA	NA	NA	NA
SQG60335.1\|1005477_1006206_+	putative branched-chain amino acid transport permease	NA	NA	NA	NA
SQG60336.1\|1006216_1007098_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
SQG60337.1\|1007114_1007822_+	branched-chain amino acid ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.2e-07	25.4
SQG60338.1\|1007824_1008583_+	branched-chain amino acid ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-14	24.4
SQG60339.1\|1008792_1010535_+	sulfite reductase	NA	NA	NA	NA
SQG60340.1\|1010527_1011052_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG60341.1\|1011091_1011886_-	D-methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG60342.1\|1012053_1013127_+	Uncharacterised protein	NA	NA	NA	NA
SQG60343.1\|1013225_1014176_+\|transposase	transposase	NA	NA	NA	NA
SQG60344.1\|1014427_1014634_-	Uncharacterised protein	NA	NA	NA	NA
SQG60345.1\|1014705_1015800_-	phage repressor protein	NA	NA	NA	NA
SQG60346.1\|1016109_1016808_-	phage-related membrane protein	NA	NA	NA	NA
SQG60347.1\|1016822_1016942_-	Uncharacterised protein	NA	NA	NA	NA
SQG60348.1\|1017061_1018012_+\|transposase	transposase	NA	NA	NA	NA
SQG60349.1\|1018687_1019137_+	DNA binding protein	C7U0W1	Enterobacteria_phage	5.2e-39	61.5
SQG60350.1\|1019123_1020401_+\|terminase	phage terminase	A0A1B1P9C9	Acinetobacter_phage	2.4e-150	64.7
SQG60351.1\|1020403_1021822_+	Uncharacterised protein	R9TF43	Synechococcus_phage	2.2e-99	42.1
SQG60352.1\|1021793_1022906_+\|head	phage head morphogenesis protein, SPP1 gp7 family	A0A0H5BBX3	Pseudomonas_phage	2.1e-102	49.7
SQG60353.1\|1022911_1023154_+	Uncharacterised protein	A0A0H5AUE5	Pseudomonas_phage	5.6e-16	53.2
SQG60354.1\|1023276_1023879_+	Uncharacterised protein	R9TF81	Synechococcus_phage	7.9e-27	43.6
SQG60355.1\|1023905_1024328_+	Uncharacterised protein	A0A0S2SYD2	Pseudomonas_phage	1.0e-52	72.8
SQG60356.1\|1024307_1024424_-\|transposase	transposase	NA	NA	NA	NA
SQG60357.1\|1024448_1025258_-\|transposase	transposase	NA	NA	NA	NA
SQG60358.1\|1025356_1026307_-\|transposase	transposase	NA	NA	NA	NA
SQG60359.1\|1026408_1026972_+	Uncharacterised protein	R9TJ64	Synechococcus_phage	2.0e-64	70.4
SQG60360.1\|1026981_1027233_+	Uncharacterised protein	NA	NA	NA	NA
SQG60361.1\|1027295_1027778_+	Uncharacterised protein	A0A2H4JE38	uncultured_Caudovirales_phage	1.8e-13	37.1
SQG60362.1\|1027779_1027980_+	Uncharacterised protein	NA	NA	NA	NA
SQG60363.1\|1027979_1028375_+	Uncharacterised protein	A0A2D2W284	Stenotrophomonas_phage	7.8e-07	35.0
SQG60364.1\|1028371_1028770_+	Uncharacterised protein	I6PCW1	Cronobacter_phage	4.2e-16	38.0
SQG60365.1\|1028766_1029189_+	Uncharacterised protein	NA	NA	NA	NA
SQG60366.1\|1029232_1029379_-	Uncharacterised protein	NA	NA	NA	NA
SQG60367.1\|1030128_1030470_+\|tail	major tail protein	A0A1S5R1H0	Pseudomonas_phage	1.2e-08	35.2
SQG60368.1\|1030479_1030809_+	phage protein	A0A2H4J121	uncultured_Caudovirales_phage	2.9e-15	44.0
SQG60369.1\|1030838_1031117_+	phage protein	A0A2H4JBP7	uncultured_Caudovirales_phage	3.5e-14	45.2
SQG60370.1\|1031142_1033755_+\|tail	putative phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	4.9e-105	38.6
SQG60371.1\|1034191_1034725_+	Domain of uncharacterised function (DUF1833)	A5A3Q9	Burkholderia_phage	1.1e-40	46.9
SQG60372.1\|1034721_1035111_+	NlpC/P60 family	A0A0G3EYJ9	Achromobacter_phage	3.0e-35	50.0
SQG60373.1\|1035103_1039060_+	Domain of uncharacterised function (DUF1983)	A0A0B5A1N2	Achromobacter_phage	3.9e-215	40.8
SQG60374.1\|1039103_1039481_+	Uncharacterised protein	NA	NA	NA	NA
SQG60375.1\|1039545_1039659_+	Uncharacterised protein	NA	NA	NA	NA
SQG60376.1\|1039962_1040775_+	phage protein	NA	NA	NA	NA
SQG60377.1\|1041000_1041552_+	phage lysozyme	NA	NA	NA	NA
SQG60378.1\|1042063_1042345_-	Uncharacterised protein	NA	NA	NA	NA
SQG60379.1\|1042894_1043566_-	Uncharacterised ACR, COG2135	Q5QF62	Pseudomonas_virus	4.7e-36	39.9
SQG60380.1\|1043921_1044608_-	two component response regulator	NA	NA	NA	NA
SQG60381.1\|1044588_1045161_-	dinucleoside polyphosphate hydrolase	NA	NA	NA	NA
SQG60382.1\|1045226_1046957_+\|tRNA	prolyl-tRNA synthetase	A0A2K9L3R9	Tupanvirus	4.6e-11	29.4
SQG60383.1\|1047009_1047438_+	thioesterase	NA	NA	NA	NA
SQG60384.1\|1047440_1048121_+	TolQ-like translocation protein	NA	NA	NA	NA
SQG60385.1\|1048120_1048579_+	TolR-like translocation protein	NA	NA	NA	NA
SQG60386.1\|1048615_1049590_+	proline-rich inner membrane protein	NA	NA	NA	NA
SQG60387.1\|1049606_1050923_+	TolB-like translocation protein	NA	NA	NA	NA
SQG60388.1\|1050954_1051452_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA
SQG60389.1\|1051538_1052228_+	periplasmic protein	NA	NA	NA	NA
SQG60390.1\|1052227_1053277_+	ABC transporter inner membrane permease	NA	NA	NA	NA
SQG60391.1\|1053273_1054068_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-15	30.6
SQG60392.1\|1054236_1054587_+	lipoprotein	NA	NA	NA	NA
SQG60393.1\|1054562_1055120_+	lipoprotein	NA	NA	NA	NA
SQG60394.1\|1055647_1056157_+	gamma-glutamyltranspeptidase	NA	NA	NA	NA
SQG60395.1\|1056249_1057200_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1071887 : 1115303

Planktothrix_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG60408.1\|1071887_1072838_-\|transposase	transposase	NA	NA	NA	NA
SQG60409.1\|1072997_1073870_-	carboxyvinyl-carboxyphosphonate phosphorylmutase	NA	NA	NA	NA
SQG60410.1\|1074210_1074429_+	Protein of uncharacterised function (DUF1059)	NA	NA	NA	NA
SQG60411.1\|1074468_1075848_-	aminotransferase	NA	NA	NA	NA
SQG60412.1\|1075889_1077287_-	amidase	NA	NA	NA	NA
SQG60413.1\|1077326_1078979_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-16	30.8
SQG60414.1\|1078982_1079867_-	ABC transporter permease	NA	NA	NA	NA
SQG60415.1\|1079866_1080808_-	ABC transporter permease	NA	NA	NA	NA
SQG60416.1\|1080886_1082506_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG60417.1\|1082672_1083488_+	transcriptional regulator	NA	NA	NA	NA
SQG60418.1\|1083555_1084125_-	transcriptional regulator	NA	NA	NA	NA
SQG60419.1\|1084125_1085076_-\|transposase	transposase	NA	NA	NA	NA
SQG60420.1\|1085395_1085590_+	Uncharacterised protein	NA	NA	NA	NA
SQG60421.1\|1085730_1086828_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA
SQG60422.1\|1086861_1088127_+	shikimate 5-dehydrogenase	NA	NA	NA	NA
SQG60423.1\|1088284_1089235_+\|transposase	transposase	NA	NA	NA	NA
SQG60424.1\|1089478_1090069_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG60425.1\|1090084_1092490_-	ferric siderophore receptor	NA	NA	NA	NA
SQG60426.1\|1092648_1093620_-	inner membrane sensor for iron transport	NA	NA	NA	NA
SQG60427.1\|1093751_1094276_+	ECF family sigma factor	NA	NA	NA	NA
SQG60428.1\|1094235_1095186_-\|transposase	transposase	NA	NA	NA	NA
SQG60429.1\|1095407_1097603_-	DNA methylase	NA	NA	NA	NA
SQG60430.1\|1097675_1098104_-	transcriptional regulator	NA	NA	NA	NA
SQG60431.1\|1098205_1099156_+\|transposase	transposase	NA	NA	NA	NA
SQG60432.1\|1099271_1099715_-	transcriptional regulator	NA	NA	NA	NA
SQG60433.1\|1099777_1100572_+	transcriptional regulator	NA	NA	NA	NA
SQG60434.1\|1100737_1101874_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.8e-63	44.8
SQG60435.1\|1101944_1103078_-	GTP-binding protein	NA	NA	NA	NA
SQG60436.1\|1103227_1103488_-	50S ribosomal protein L27	NA	NA	NA	NA
SQG60437.1\|1103521_1103833_-	50S ribosomal protein L21	NA	NA	NA	NA
SQG60438.1\|1104257_1105406_+	Fumarylacetoacetate (FAA) hydrolase family protein	NA	NA	NA	NA
SQG60439.1\|1105520_1106486_+	octaprenyl-diphosphate synthase	NA	NA	NA	NA
SQG60440.1\|1106754_1107621_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG60441.1\|1107751_1109800_+	hydantoin utilization protein A	NA	NA	NA	NA
SQG60442.1\|1109817_1111815_+	hydantoin utilization protein B	NA	NA	NA	NA
SQG60443.1\|1111849_1113187_+	amino acid deaminase	NA	NA	NA	NA
SQG60444.1\|1113449_1115303_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1150749 : 1200820

Acinetobacter_phage(25.0%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG60472.1\|1150749_1151700_-\|transposase	transposase	NA	NA	NA	NA
SQG60473.1\|1151798_1152749_-\|transposase	transposase	NA	NA	NA	NA
SQG60474.1\|1152847_1153798_-\|transposase	transposase	NA	NA	NA	NA
SQG60475.1\|1153896_1154553_-	lipoprotein	NA	NA	NA	NA
SQG60476.1\|1154700_1157409_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.8e-15	24.0
SQG60477.1\|1157418_1158438_+	fructose-1,6-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.5e-49	35.7
SQG60478.1\|1158434_1159385_-\|transposase	transposase	NA	NA	NA	NA
SQG60479.1\|1159483_1159972_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
SQG60480.1\|1159968_1160652_-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase	NA	NA	NA	NA
SQG60481.1\|1160681_1164137_+	transcription-repair coupling factor	NA	NA	NA	NA
SQG60482.1\|1164172_1165033_+	phosphoserine phosphatase	NA	NA	NA	NA
SQG60483.1\|1165161_1166079_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG60484.1\|1166216_1167197_+	putattive exported protein	NA	NA	NA	NA
SQG60485.1\|1167256_1169047_+	acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	2.0e-25	26.1
SQG60486.1\|1169043_1169973_+	short-chain dehydrogenase	NA	NA	NA	NA
SQG60487.1\|1169829_1170348_-	GNAT family acetyltransferase	NA	NA	NA	NA
SQG60488.1\|1170460_1172731_-	TonB-dependent receptor for iron transport	NA	NA	NA	NA
SQG60489.1\|1172942_1175174_-	TonB-dependent receptor for iron transport	NA	NA	NA	NA
SQG60490.1\|1175474_1175804_-	membrane protein	NA	NA	NA	NA
SQG60491.1\|1175820_1177302_-	NADH-ubiquinone oxidoreductase subunit N	NA	NA	NA	NA
SQG60492.1\|1177315_1178818_-	NADH dehydrogenase subunit M	NA	NA	NA	NA
SQG60493.1\|1178814_1180827_-	NADH-ubiquinone oxidoreductase subunit L	NA	NA	NA	NA
SQG60494.1\|1180844_1181153_-	NADH dehydrogenase subunit K	NA	NA	NA	NA
SQG60495.1\|1181149_1181797_-	NADH-ubiquinone oxidoreductase subunit J	NA	NA	NA	NA
SQG60496.1\|1181814_1182303_-	NADH dehydrogenase subunit I	NA	NA	NA	NA
SQG60497.1\|1182324_1183398_-	NADH dehydrogenase subunit H	NA	NA	NA	NA
SQG60498.1\|1183397_1185725_-	NADH-ubiquinone oxidoreductase, 75 kDa subunit	NA	NA	NA	NA
SQG60499.1\|1185740_1187108_-	NADH dehydrogenase I subunit F	NA	NA	NA	NA
SQG60500.1\|1187104_1187599_-	NADH dehydrogenase subunit E	NA	NA	NA	NA
SQG60501.1\|1187644_1188901_-	NADH dehydrogenase subunit D	NA	NA	NA	NA
SQG60502.1\|1188903_1189521_-	respiratory-chain NADH dehydrogenase, 30 kDa subunit	NA	NA	NA	NA
SQG60503.1\|1189601_1190078_-	NADH dehydrogenase subunit B	NA	NA	NA	NA
SQG60504.1\|1190114_1190474_-	NADH dehydrogenase I subunit A	NA	NA	NA	NA
SQG60505.1\|1190662_1191820_-	outer membrane porin protein	NA	NA	NA	NA
SQG60506.1\|1192132_1193083_+\|transposase	transposase	NA	NA	NA	NA
SQG60507.1\|1193100_1193655_+	TetR family transcriptional regulator	NA	NA	NA	NA
SQG60508.1\|1193656_1194091_+	thioesterase	NA	NA	NA	NA
SQG60509.1\|1194087_1194522_+	NAD binding domain of 6-phosphogluconate dehydrogenase	NA	NA	NA	NA
SQG60510.1\|1194505_1195309_-	membrane-associated phosphatase	NA	NA	NA	NA
SQG60511.1\|1195325_1196141_-	DNA repair exonuclease	NA	NA	NA	NA
SQG60512.1\|1196137_1196953_-	Putative lipid kinase BmrU	NA	NA	NA	NA
SQG60513.1\|1197099_1197801_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG60514.1\|1197828_1199787_-\|holin	high-affinity choline transport protein	A0A2I7QNT1	Vibrio_phage	8.0e-28	30.3
SQG60515.1\|1199869_1200820_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1223843 : 1277369

Acidithiobacillus_phage(33.33%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG60533.1\|1223843_1224773_-\|transposase	transposase for IS1663	NA	NA	NA	NA
SQG60534.1\|1225056_1226040_-	putattive exported protein	NA	NA	NA	NA
SQG60535.1\|1226098_1227226_-	argininosuccinate lyase	NA	NA	NA	NA
SQG60536.1\|1227216_1227591_-	argininosuccinate lyase	NA	NA	NA	NA
SQG60537.1\|1227638_1229027_-	catabolic enzyme	NA	NA	NA	NA
SQG60538.1\|1229057_1230047_-	putattive exported protein	NA	NA	NA	NA
SQG60539.1\|1230157_1231390_-	methylaspartate ammonia-lyase	NA	NA	NA	NA
SQG60540.1\|1231671_1232472_+	transcriptional regulator	NA	NA	NA	NA
SQG60541.1\|1232494_1234726_-\|holin	high-affinity choline transport protein	NA	NA	NA	NA
SQG60542.1\|1235513_1235960_-	protein-export membrane protein	NA	NA	NA	NA
SQG60543.1\|1235981_1236728_-	triosephosphate isomerase	NA	NA	NA	NA
SQG60544.1\|1236871_1237849_-	zinc-binding dehydrogenase	NA	NA	NA	NA
SQG60545.1\|1238548_1239094_+	Uncharacterised protein	K4HZX4	Acidithiobacillus_phage	3.0e-09	30.5
SQG60546.1\|1239087_1240305_-	threonine dehydratase catabolic	NA	NA	NA	NA
SQG60547.1\|1240445_1241396_+\|transposase	transposase	NA	NA	NA	NA
SQG60548.1\|1241392_1242112_-	lipoprotein	NA	NA	NA	NA
SQG60549.1\|1242232_1244392_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
SQG60550.1\|1244482_1244752_-	30S ribosomal protein S15	NA	NA	NA	NA
SQG60551.1\|1245045_1245573_+	lipoprotein	NA	NA	NA	NA
SQG60552.1\|1245591_1246371_-	CDP-diacylglycerol--serine O-phosphatidyltransferase protein	NA	NA	NA	NA
SQG60553.1\|1246538_1247555_-	ketol-acid reductoisomerase	NA	NA	NA	NA
SQG60554.1\|1247627_1248119_-	acetolactate synthase 3 regulatory subunit	NA	NA	NA	NA
SQG60555.1\|1248129_1249845_-	acetolactate synthase isozyme III large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	3.1e-60	30.3
SQG60556.1\|1250315_1250927_+	membrane protein	NA	NA	NA	NA
SQG60557.1\|1251008_1251959_+\|transposase	transposase	NA	NA	NA	NA
SQG60558.1\|1251955_1253788_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-27	26.4
SQG60559.1\|1254186_1254846_+	thiopurine S-methyltransferase	NA	NA	NA	NA
SQG60560.1\|1254939_1255086_+	vir-repressed protein	NA	NA	NA	NA
SQG60561.1\|1255194_1255362_+	lipoprotein	NA	NA	NA	NA
SQG60562.1\|1255373_1256054_-	lipoprotein	NA	NA	NA	NA
SQG60563.1\|1256335_1257052_+	Cyclic di-GMP binding protein YcgR	NA	NA	NA	NA
SQG60564.1\|1257066_1258368_-	phospholipase	NA	NA	NA	NA
SQG60565.1\|1258502_1259321_-	aldehyde dehydrogenase	NA	NA	NA	NA
SQG60566.1\|1259446_1259995_-	aldehyde dehydrogenase	NA	NA	NA	NA
SQG60567.1\|1260536_1262915_+	H3	NA	NA	NA	NA
SQG60568.1\|1262911_1263409_+	metal-dependent phosphohydrolase	NA	NA	NA	NA
SQG60569.1\|1263632_1264985_+	catabolic enzyme	NA	NA	NA	NA
SQG60570.1\|1265013_1265535_+	biotin carboxyl carrier protein	NA	NA	NA	NA
SQG60571.1\|1265531_1266986_+	carboxylase	NA	NA	NA	NA
SQG60572.1\|1267020_1267269_+	Uncharacterised protein	NA	NA	NA	NA
SQG60573.1\|1267374_1268250_+	Predicted metal-dependent hydrolase of the TIM-barrel fold	NA	NA	NA	NA
SQG60574.1\|1268275_1269331_+	Uncharacterised protein	NA	NA	NA	NA
SQG60575.1\|1269343_1270135_+	GntR family transcriptional regulator	NA	NA	NA	NA
SQG60576.1\|1270167_1271538_+	biotin carboxylase	NA	NA	NA	NA
SQG60577.1\|1271553_1272633_+	acyl-CoA carboxylase	NA	NA	NA	NA
SQG60578.1\|1272714_1273665_+\|transposase	transposase	NA	NA	NA	NA
SQG60579.1\|1273729_1273939_+	Uncharacterised protein	NA	NA	NA	NA
SQG60580.1\|1274098_1274311_+	Uncharacterised protein	NA	NA	NA	NA
SQG60581.1\|1274430_1275549_+	putative mannose-6-phosphate isomerase	NA	NA	NA	NA
SQG60582.1\|1275645_1275861_+	Uncharacterised protein	NA	NA	NA	NA
SQG60583.1\|1276054_1276306_+	Uncharacterised protein	NA	NA	NA	NA
SQG60584.1\|1276418_1277369_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1294632 : 1363371

Bacillus_virus(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG60600.1\|1294632_1295583_+\|transposase	transposase	NA	NA	NA	NA
SQG60601.1\|1296567_1297749_-	sugar efflux transporter	NA	NA	NA	NA
SQG60602.1\|1297964_1298642_-	phosphoglycolate phosphatase	NA	NA	NA	NA
SQG60603.1\|1298638_1299412_-	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
SQG60604.1\|1299489_1300071_-	outer membrane protein A	NA	NA	NA	NA
SQG60605.1\|1300441_1303123_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.2e-104	33.5
SQG60606.1\|1303125_1304256_+	phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	4.9e-78	44.0
SQG60607.1\|1304248_1305334_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
SQG60608.1\|1305420_1306320_+	prephenate dehydrogenase	NA	NA	NA	NA
SQG60609.1\|1306316_1307645_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
SQG60610.1\|1307659_1308331_+	cytidylate kinase	NA	NA	NA	NA
SQG60611.1\|1308518_1310234_+	30S ribosomal protein S1	NA	NA	NA	NA
SQG60612.1\|1310235_1310595_+	Integration host factor subunit beta	NA	NA	NA	NA
SQG60613.1\|1310786_1311101_+	membrane protein	NA	NA	NA	NA
SQG60614.1\|1311143_1312364_+	tetratricopeptide repeat protein	NA	NA	NA	NA
SQG60615.1\|1312360_1313302_+	ADP-heptose synthase	A0A2H4N7X4	Lake_Baikal_phage	1.5e-16	28.1
SQG60616.1\|1313298_1314288_+	ADP-L-glycero-D-manno-heptose-6-epimerase	E3SJ87	Synechococcus_phage	2.2e-26	34.4
SQG60617.1\|1314418_1314907_+	ComE operon protein 1	NA	NA	NA	NA
SQG60618.1\|1315005_1315956_+\|transposase	transposase	NA	NA	NA	NA
SQG60619.1\|1316036_1316948_+	cysteine synthase B	A0A1X9I5K7	Streptococcus_phage	8.0e-47	38.8
SQG60620.1\|1317008_1318154_-	membrane-bound lytic murein transglycosylase B	NA	NA	NA	NA
SQG60621.1\|1318173_1319088_+	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	9.8e-45	34.7
SQG60622.1\|1319159_1319909_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
SQG60623.1\|1319908_1320838_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
SQG60624.1\|1321081_1322908_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQG60625.1\|1322990_1323632_+	antioxidant protein	NA	NA	NA	NA
SQG60626.1\|1323821_1324856_+	sulfate-binding protein	NA	NA	NA	NA
SQG60627.1\|1324871_1325075_+	sulfate transport system permease	NA	NA	NA	NA
SQG60628.1\|1325099_1325771_+	sulfate transport system permease	NA	NA	NA	NA
SQG60629.1\|1325885_1326668_+	sulfate transport system permease	NA	NA	NA	NA
SQG60630.1\|1326692_1327757_+	sulfate transport ATP-binding protein	G3M9Y6	Bacillus_virus	3.8e-24	30.3
SQG60631.1\|1327753_1329463_+	sulfate adenylyltransferase subunit 2	NA	NA	NA	NA
SQG60632.1\|1329985_1330762_+	sulfate adenylyltransferase subunit 1	NA	NA	NA	NA
SQG60633.1\|1330950_1332225_+	radical SAM protein	NA	NA	NA	NA
SQG60634.1\|1332378_1332759_+	Uncharacterised protein	NA	NA	NA	NA
SQG60635.1\|1332766_1333600_-	DMT superfamily permease	NA	NA	NA	NA
SQG60636.1\|1333944_1334325_+	50S ribosomal protein L19	NA	NA	NA	NA
SQG60637.1\|1334595_1335261_+	hydrolase	NA	NA	NA	NA
SQG60638.1\|1335356_1336307_-\|transposase	transposase	NA	NA	NA	NA
SQG60639.1\|1336411_1337461_+	oxidoreductase	NA	NA	NA	NA
SQG60640.1\|1337598_1338528_-\|transposase	transposase for IS1663	NA	NA	NA	NA
SQG60641.1\|1338767_1340051_-	Major Facilitator Superfamily	NA	NA	NA	NA
SQG60642.1\|1340123_1340696_-	chorismate--pyruvate lyase	NA	NA	NA	NA
SQG60643.1\|1340755_1341487_+	RNA pseudouridylate synthase	NA	NA	NA	NA
SQG60644.1\|1341538_1342474_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG60645.1\|1342706_1343306_+	acriflavine resistance protein a	NA	NA	NA	NA
SQG60646.1\|1343263_1346443_+	acriflavine resistance protein B	NA	NA	NA	NA
SQG60647.1\|1346439_1347822_+	outer membrane lipoprotein	NA	NA	NA	NA
SQG60648.1\|1347891_1348143_-	membrane protein	NA	NA	NA	NA
SQG60649.1\|1348288_1348939_-	SCO1/SenC/PrrC family protein	NA	NA	NA	NA
SQG60650.1\|1349089_1351204_-	oligopeptidase A	NA	NA	NA	NA
SQG60651.1\|1351279_1352131_-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	2.1e-33	39.8
SQG60652.1\|1352127_1352754_-	two-component response regulator	NA	NA	NA	NA
SQG60653.1\|1352750_1354505_-	two-component sensor kinase	NA	NA	NA	NA
SQG60654.1\|1354797_1357503_+	pyruvate dehydrogenase subunit E1	NA	NA	NA	NA
SQG60655.1\|1357515_1359177_+	dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex	NA	NA	NA	NA
SQG60656.1\|1359189_1360980_+	dihydrolipoamide dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.4e-39	25.2
SQG60657.1\|1361201_1362377_-	flagellin	NA	NA	NA	NA
SQG60658.1\|1362419_1362731_-\|transposase	transposase	NA	NA	NA	NA
SQG60659.1\|1362672_1363371_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_13

1374978 : 1417512

uncultured_Mediterranean_phage(37.5%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG60669.1\|1374978_1376112_-\|transposase	transposase	NA	NA	NA	NA
SQG60670.1\|1376204_1376357_-	Uncharacterised protein	NA	NA	NA	NA
SQG60671.1\|1376388_1376937_-	DinB family	NA	NA	NA	NA
SQG60672.1\|1376955_1377441_-	acetyltransferase	NA	NA	NA	NA
SQG60673.1\|1377618_1378557_+	curved DNA-binding protein	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	5.6e-11	24.1
SQG60674.1\|1378559_1378877_+	Uncharacterised protein	NA	NA	NA	NA
SQG60675.1\|1378922_1379867_+	membrane protein	NA	NA	NA	NA
SQG60676.1\|1379887_1380178_-	phosphate transporter	NA	NA	NA	NA
SQG60677.1\|1380184_1381363_-	phosphate transporter	NA	NA	NA	NA
SQG60678.1\|1381547_1382198_+	molybdenum cofactor biosynthesis protein MogA	NA	NA	NA	NA
SQG60679.1\|1382251_1382587_+	lipoprotein	NA	NA	NA	NA
SQG60680.1\|1382583_1383444_+	peptidase	A0A292GJG6	Xanthomonas_phage	2.6e-15	36.1
SQG60681.1\|1383460_1383742_-	Uncharacterised protein	NA	NA	NA	NA
SQG60682.1\|1383815_1384079_-	translation initiation factor IF-1	NA	NA	NA	NA
SQG60683.1\|1384322_1385273_+\|transposase	transposase	NA	NA	NA	NA
SQG60684.1\|1385571_1386309_-	RNA polymerase sigma factor for flagellar operon	NA	NA	NA	NA
SQG60685.1\|1386744_1387068_+	flagellar transcriptional activator FlbB	NA	NA	NA	NA
SQG60686.1\|1387102_1387663_+	flagellar transcriptional activator FlhC	NA	NA	NA	NA
SQG60687.1\|1387783_1388659_+	flagellar motor protein MotA	NA	NA	NA	NA
SQG60688.1\|1388671_1389619_+	chemotaxis protein MotB	NA	NA	NA	NA
SQG60689.1\|1389720_1390014_+	chemotaxis protein CheY	NA	NA	NA	NA
SQG60690.1\|1390040_1392098_+	chemotaxis protein CheA	NA	NA	NA	NA
SQG60691.1\|1392112_1392613_+	chemotaxis protein CheW	NA	NA	NA	NA
SQG60692.1\|1392686_1394393_+	methyl-accepting chemotaxis protein I	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-12	41.7
SQG60693.1\|1394401_1394965_+	chemotaxis protein methyltransferase	NA	NA	NA	NA
SQG60694.1\|1394903_1395260_+	chemotaxis protein methyltransferase	NA	NA	NA	NA
SQG60695.1\|1395256_1396309_+	protein-glutamate methylesterase	NA	NA	NA	NA
SQG60696.1\|1396361_1396751_+	chemotaxis response regulator	Q56AR1	Bacillus_thuringiensis_phage	5.7e-10	33.3
SQG60697.1\|1396759_1397392_+	chemotaxis protein CheZ	NA	NA	NA	NA
SQG60698.1\|1397491_1398421_-\|transposase	transposase for IS1663	NA	NA	NA	NA
SQG60699.1\|1399296_1400346_+	aldo/keto reductase	NA	NA	NA	NA
SQG60700.1\|1400342_1401986_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
SQG60701.1\|1401982_1402870_-	magnesium and cobalt efflux protein	NA	NA	NA	NA
SQG60702.1\|1403010_1403484_-\|protease	metalloprotease	NA	NA	NA	NA
SQG60703.1\|1403473_1404496_-	phoH-like protein	A0A0S0MVD6	Pseudomonas_phage	8.7e-50	45.4
SQG60704.1\|1404492_1405920_-\|tRNA	(dimethylallyl)adenosine tRNA methylthiotransferase	NA	NA	NA	NA
SQG60705.1\|1406076_1406490_+	membrane-associated phospholipid phosphatase	NA	NA	NA	NA
SQG60706.1\|1406479_1406803_+	membrane-associated phospholipid phosphatase	NA	NA	NA	NA
SQG60707.1\|1406857_1407787_-\|transposase	transposase for IS1663	NA	NA	NA	NA
SQG60708.1\|1408206_1409142_-	protein-export membrane protein	A0A1B1IVP7	uncultured_Mediterranean_phage	3.0e-41	35.5
SQG60709.1\|1409191_1411072_-	protein-export membrane protein	NA	NA	NA	NA
SQG60710.1\|1411138_1411483_-	secreted protein	A0A1B1IVR5	uncultured_Mediterranean_phage	1.0e-10	40.4
SQG60711.1\|1411627_1412764_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.9e-85	44.4
SQG60712.1\|1412760_1413804_-\|tRNA	S-adenosylmethionine--tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
SQG60713.1\|1413991_1415428_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
SQG60714.1\|1415518_1416160_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
SQG60715.1\|1416582_1417512_+\|transposase	transposase for IS1663	NA	NA	NA	NA

DBSCAN-SWA_14

1432969 : 1556847

107

Planktothrix_phage(13.33%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG60729.1\|1432969_1433920_-\|transposase	transposase	NA	NA	NA	NA
SQG60730.1\|1434287_1435064_-	phosphate transport ATP-binding protein	G9BWD6	Planktothrix_phage	4.3e-17	28.7
SQG60731.1\|1435108_1435966_-	phosphate ABC transporter permease	NA	NA	NA	NA
SQG60732.1\|1435987_1437004_-	phosphate ABC transporter permease	NA	NA	NA	NA
SQG60733.1\|1437138_1438179_-	phosphate-binding periplasmic protein	M4QHS4	Cyanophage	2.1e-51	40.2
SQG60734.1\|1438373_1440455_-	polyphosphate kinase	NA	NA	NA	NA
SQG60735.1\|1440690_1442184_+	exopolyphosphatase	NA	NA	NA	NA
SQG60736.1\|1442302_1442413_-	Uncharacterised protein	NA	NA	NA	NA
SQG60737.1\|1442414_1443209_-	N-acyl amino acid synthase, PEP-CTERM/exosortase system-associated	NA	NA	NA	NA
SQG60738.1\|1443429_1444788_-	phosphoglucomutase/phosphomannomutase	NA	NA	NA	NA
SQG60739.1\|1444784_1445627_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.2e-26	32.5
SQG60740.1\|1445645_1447532_-	cell division protein	M4QMW8	Micromonas_pusilla_virus	1.4e-109	41.5
SQG60741.1\|1447769_1448402_-	ribosomal RNA large subunit methyltransferase j	NA	NA	NA	NA
SQG60742.1\|1448420_1449023_+	RNA-binding protein YhbY	NA	NA	NA	NA
SQG60743.1\|1449174_1450125_+\|transposase	transposase	NA	NA	NA	NA
SQG60744.1\|1450295_1450706_+	pilus assembly protein	NA	NA	NA	NA
SQG60745.1\|1450927_1451728_-	membrane protein	NA	NA	NA	NA
SQG60746.1\|1451771_1452758_-	homoserine kinase	NA	NA	NA	NA
SQG60747.1\|1452933_1453911_+\|tRNA	tRNA-dihydrouridine synthase A	NA	NA	NA	NA
SQG60748.1\|1453907_1454858_-\|transposase	transposase	NA	NA	NA	NA
SQG60749.1\|1454956_1455907_-\|transposase	transposase	NA	NA	NA	NA
SQG60750.1\|1456019_1456478_-	putative manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
SQG60751.1\|1456514_1457828_-	ribonuclease	NA	NA	NA	NA
SQG60752.1\|1457845_1458217_+	Predicted membrane protein	NA	NA	NA	NA
SQG60753.1\|1458213_1459677_+	Uncharacterized conserved protein	A0A075BSJ0	Microcystis_phage	1.7e-43	32.5
SQG60754.1\|1459817_1460546_+	two-component response regulator	NA	NA	NA	NA
SQG60755.1\|1460527_1463377_-	two-component histidine kinase	NA	NA	NA	NA
SQG60756.1\|1463589_1464540_+\|transposase	transposase	NA	NA	NA	NA
SQG60757.1\|1464707_1465532_+	high-affinity branched-chain amino acid transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.0e-08	22.7
SQG60758.1\|1465531_1466410_+	high-affinity branched-chain amino acid transport system permease	NA	NA	NA	NA
SQG60759.1\|1466661_1466823_-	Uncharacterised protein	NA	NA	NA	NA
SQG60760.1\|1467099_1467258_-	Uncharacterised protein	NA	NA	NA	NA
SQG60761.1\|1467314_1468430_+	amino acids binding protein	NA	NA	NA	NA
SQG60762.1\|1468437_1469253_+	high-affinity branched-chain amino acid transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	7.5e-12	23.7
SQG60763.1\|1469249_1471115_+	long-chain fatty-acid--CoA ligase	A0A1V0SBX8	Catovirus	9.3e-50	23.3
SQG60764.1\|1471193_1471826_+	TetR family transcriptional regulator	NA	NA	NA	NA
SQG60765.1\|1471822_1472125_-	Uncharacterised protein	NA	NA	NA	NA
SQG60766.1\|1472167_1473688_-\|tRNA	lysyl-tRNA synthetase	A0A1V0SAC0	Catovirus	1.2e-82	36.0
SQG60767.1\|1473694_1474450_-	short chain dehydrogenase	NA	NA	NA	NA
SQG60768.1\|1474479_1475361_-	peptide chain release factor 2	NA	NA	NA	NA
SQG60769.1\|1475686_1477423_-	single-stranded-DNA-specific exonuclease	A7KV88	Bacillus_phage	1.3e-50	28.3
SQG60770.1\|1477368_1478310_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG60771.1\|1478355_1479636_+	lipoprotein releasing system transmembrane protein	NA	NA	NA	NA
SQG60772.1\|1479628_1480324_+	lipoprotein releasing system ATP-binding protein	G9BWD6	Planktothrix_phage	7.0e-35	38.6
SQG60773.1\|1480357_1481185_+	deoxyribonuclease	NA	NA	NA	NA
SQG60774.1\|1481466_1484697_+\|protease	serine protease	NA	NA	NA	NA
SQG60775.1\|1485432_1489359_+	putative outer membrane ligand binding protein	NA	NA	NA	NA
SQG60776.1\|1489552_1491166_+	competence protein	NA	NA	NA	NA
SQG60777.1\|1491258_1493055_+\|transposase	transposase	NA	NA	NA	NA
SQG60778.1\|1493096_1494023_+	hydrolase	NA	NA	NA	NA
SQG60779.1\|1494092_1494938_+	phosphoesterase	NA	NA	NA	NA
SQG60780.1\|1495005_1495560_+	transcription elongation factor GreB	NA	NA	NA	NA
SQG60781.1\|1495606_1496557_-\|transposase	transposase	NA	NA	NA	NA
SQG60782.1\|1496655_1497279_-	serotype 2 fimbrial subunit	NA	NA	NA	NA
SQG60783.1\|1497457_1499740_-	NADP-dependent malic enzyme	NA	NA	NA	NA
SQG60784.1\|1499894_1502591_-	2-oxoacid dehydrogenase subunit E1	NA	NA	NA	NA
SQG60785.1\|1502716_1503205_+	transcription regulator AsnC	NA	NA	NA	NA
SQG60786.1\|1503240_1505103_+	oligopeptide transporter	NA	NA	NA	NA
SQG60787.1\|1505081_1505291_+	oligopeptide transporter	NA	NA	NA	NA
SQG60788.1\|1505615_1508486_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
SQG60789.1\|1508531_1509746_+	2-oxoglutarate dehydrogenase complex, E2 component	NA	NA	NA	NA
SQG60790.1\|1509975_1511403_+	2-oxoglutarate dehydrogenase complex, E3 component	A0A2K5B2C5	Erysipelothrix_phage	2.1e-41	28.1
SQG60791.1\|1511500_1512592_+	ATPase	NA	NA	NA	NA
SQG60792.1\|1512604_1513363_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
SQG60793.1\|1513450_1514353_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG60794.1\|1514349_1515300_-\|transposase	transposase	NA	NA	NA	NA
SQG60795.1\|1515429_1516413_-	putattive exported protein	NA	NA	NA	NA
SQG60796.1\|1516467_1517190_-	short-chain dehydrogenase	NA	NA	NA	NA
SQG60797.1\|1517186_1517594_-	alpha-ketoglutarate-dependent taurine dioxygenase	NA	NA	NA	NA
SQG60798.1\|1517657_1518524_+\|transposase	transposase	NA	NA	NA	NA
SQG60799.1\|1518668_1520024_+\|tRNA	tryptophanyl-tRNA synthetase	NA	NA	NA	NA
SQG60800.1\|1520104_1522480_-	transcription accessory protein	NA	NA	NA	NA
SQG60801.1\|1522644_1524720_+	ATP-dependent helicase	A0A127AW80	Bacillus_phage	2.4e-75	30.0
SQG60802.1\|1524781_1525630_-	competence lipoprotein	NA	NA	NA	NA
SQG60803.1\|1525683_1526646_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
SQG60804.1\|1526633_1527389_+	Laccase domain protein yfiH	NA	NA	NA	NA
SQG60805.1\|1527496_1529134_+	poly-beta-hydroxybutyrate polymerase	NA	NA	NA	NA
SQG60806.1\|1529201_1529939_+	3-ketoacyl-(acyl-carrier-protein) reductase	NA	NA	NA	NA
SQG60807.1\|1530041_1530617_+	regulator of poly-beta-hydroxybutyrate (PHB) biosynthesis	NA	NA	NA	NA
SQG60808.1\|1530789_1531326_+	Pathogen-specific membrane antigen	NA	NA	NA	NA
SQG60809.1\|1531358_1531673_+	Uncharacterised protein	NA	NA	NA	NA
SQG60810.1\|1531688_1532534_+	permease	NA	NA	NA	NA
SQG60811.1\|1532572_1533952_+	regulatory protein	NA	NA	NA	NA
SQG60812.1\|1534029_1534911_+	hypotheticals protein	NA	NA	NA	NA
SQG60813.1\|1535009_1535960_+\|transposase	transposase	NA	NA	NA	NA
SQG60814.1\|1536058_1537009_+\|transposase	transposase	NA	NA	NA	NA
SQG60815.1\|1537005_1537416_-	dioxygenase	NA	NA	NA	NA
SQG60816.1\|1537523_1538378_-	2-pyrone-4,6-dicarboxylic acid hydrolase	NA	NA	NA	NA
SQG60817.1\|1538370_1539333_-	lipoprotein	NA	NA	NA	NA
SQG60818.1\|1539378_1540503_-	racemase	Q6A202	Oenococcus_phage	1.5e-31	28.3
SQG60819.1\|1540608_1541487_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG60820.1\|1541611_1542391_+	short-chain dehydrogenase	NA	NA	NA	NA
SQG60821.1\|1542544_1543966_+	efflux protein	NA	NA	NA	NA
SQG60822.1\|1544400_1546098_+	sodium/solute symporter	NA	NA	NA	NA
SQG60823.1\|1546126_1546249_+	Uncharacterised protein	NA	NA	NA	NA
SQG60824.1\|1546324_1547437_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA
SQG60825.1\|1547592_1548339_+	adolase	NA	NA	NA	NA
SQG60826.1\|1548346_1549252_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG60827.1\|1549394_1550312_+	oxidoreductase	NA	NA	NA	NA
SQG60828.1\|1550351_1551305_+	lipoprotein	NA	NA	NA	NA
SQG60829.1\|1551329_1551908_+	Protein of uncharacterised function (DUF1185)	NA	NA	NA	NA
SQG60830.1\|1551922_1552339_-	membrane protein	NA	NA	NA	NA
SQG60831.1\|1552373_1553507_-	membrane protein	A0A0R6PEZ3	Moraxella_phage	1.4e-35	41.2
SQG60832.1\|1553758_1554190_+	Uncharacterised protein	NA	NA	NA	NA
SQG60833.1\|1554267_1554621_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQG60834.1\|1554704_1555694_-	succinylglutamate desuccinylase	NA	NA	NA	NA
SQG60835.1\|1555896_1556847_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_15

1664604 : 1724452

Vibrio_phage(20.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG60936.1\|1664604_1665555_-\|transposase	transposase	NA	NA	NA	NA
SQG60937.1\|1665908_1666490_-	membrane protein	A0A2I7SAW6	Vibrio_phage	9.4e-17	37.3
SQG60938.1\|1666486_1667320_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
SQG60939.1\|1667530_1668844_+	glycerol-3-phosphate-binding periplasmic protein precursor	NA	NA	NA	NA
SQG60940.1\|1669020_1669902_+	sn-glycerol-3-phosphate ABC transporter permease	NA	NA	NA	NA
SQG60941.1\|1669921_1670773_+	sn-glycerol-3-phosphate ABC transporter permease	NA	NA	NA	NA
SQG60942.1\|1670825_1671914_+	sn-glycerol-3-phosphate transport ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-19	31.2
SQG60943.1\|1672024_1673152_-	leu/ile/val-binding protein	NA	NA	NA	NA
SQG60944.1\|1673272_1673998_+	Predicted esterase of the alpha/beta hydrolase fold	NA	NA	NA	NA
SQG60945.1\|1674096_1675047_+\|transposase	transposase	NA	NA	NA	NA
SQG60946.1\|1675026_1675311_-	membrane protein	NA	NA	NA	NA
SQG60947.1\|1675268_1675646_-	membrane protein	NA	NA	NA	NA
SQG60948.1\|1675793_1676291_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG60949.1\|1676287_1676815_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG60950.1\|1676948_1677764_+	D-methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG60951.1\|1677776_1678958_-	L-lactate dehydrogenase	NA	NA	NA	NA
SQG60952.1\|1679005_1679899_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA
SQG60953.1\|1680025_1680496_-	Uncharacterised protein	NA	NA	NA	NA
SQG60954.1\|1680621_1681449_-	lipoprotein	NA	NA	NA	NA
SQG60955.1\|1681477_1682254_-	lipoate-protein ligase A	NA	NA	NA	NA
SQG60956.1\|1682250_1682526_-	lipoate-protein ligase A	NA	NA	NA	NA
SQG60957.1\|1682540_1683005_-	acetyltransferase	NA	NA	NA	NA
SQG60958.1\|1683016_1683718_-	glutathione transferase	NA	NA	NA	NA
SQG60959.1\|1683827_1684328_-	glutathione peroxidase	Q6VZR0	Canarypox_virus	4.7e-25	38.4
SQG60960.1\|1684410_1687041_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG60961.1\|1687216_1687552_+	Uncharacterized enzyme of heme biosynthesis	NA	NA	NA	NA
SQG60962.1\|1687739_1689188_+	carnitine dehydratase	NA	NA	NA	NA
SQG60963.1\|1689245_1689590_+	putative arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	3.0e-31	58.4
SQG60964.1\|1689696_1690236_-	bacterioferritin comigratory protein	NA	NA	NA	NA
SQG60965.1\|1690328_1691279_-\|transposase	transposase	NA	NA	NA	NA
SQG60966.1\|1691377_1691785_-	Uncharacterised protein	NA	NA	NA	NA
SQG60967.1\|1692017_1692449_-	membrane protein	NA	NA	NA	NA
SQG60968.1\|1692630_1693035_-	membrane protein	NA	NA	NA	NA
SQG60969.1\|1693125_1693851_-	Uncharacterised protein	NA	NA	NA	NA
SQG60970.1\|1693936_1694275_+\|protease	metalloprotease	NA	NA	NA	NA
SQG60971.1\|1694271_1694595_+	Uncharacterised protein	NA	NA	NA	NA
SQG60972.1\|1694597_1695485_-	oxidoreductase	NA	NA	NA	NA
SQG60973.1\|1695517_1695943_-	universal stress family protein	NA	NA	NA	NA
SQG60974.1\|1696014_1696368_-	Uncharacterised protein	NA	NA	NA	NA
SQG60975.1\|1696607_1697114_-	Uncharacterised protein	NA	NA	NA	NA
SQG60976.1\|1697152_1698484_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQG60977.1\|1698543_1699359_+	Predicted enzyme with a TIM-barrel fold	NA	NA	NA	NA
SQG60978.1\|1699355_1700210_+	pyridoxine kinase	NA	NA	NA	NA
SQG60979.1\|1700310_1702230_+	two-component sensor histidine kinase	NA	NA	NA	NA
SQG60980.1\|1702196_1703282_+	two-component sensor histidine kinase	B5LWN8	Feldmannia_species_virus	6.9e-05	26.7
SQG60981.1\|1705812_1706754_-	4-alpha-glucanotransferase	NA	NA	NA	NA
SQG60982.1\|1706738_1707122_-	4-alpha-glucanotransferase	NA	NA	NA	NA
SQG60983.1\|1707182_1708937_-	alpha amylase	NA	NA	NA	NA
SQG60984.1\|1708933_1711054_-	glycosyl hydrolase	NA	NA	NA	NA
SQG60985.1\|1711058_1713254_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA
SQG60986.1\|1713250_1716592_-	alpha-glucosidase	NA	NA	NA	NA
SQG60987.1\|1716603_1718136_-	alpha-amylase	NA	NA	NA	NA
SQG60988.1\|1718129_1719272_-	alpha-amylase	NA	NA	NA	NA
SQG60989.1\|1719394_1720345_+\|transposase	transposase	NA	NA	NA	NA
SQG60990.1\|1720410_1720590_-	Uncharacterised protein	NA	NA	NA	NA
SQG60991.1\|1720706_1721462_-	Esterase/lipase	NA	NA	NA	NA
SQG60992.1\|1721448_1722594_-	Protein of uncharacterised function (DUF3182)	NA	NA	NA	NA
SQG60993.1\|1722647_1723484_-	Inner membrane protein YbhQ / putative membrane protein	NA	NA	NA	NA
SQG60994.1\|1723501_1724452_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_16

1814065 : 1852655

Emiliania_huxleyi_virus(14.29%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG61081.1\|1814065_1815400_+\|protease	membrane-associated protease	NA	NA	NA	NA
SQG61082.1\|1815452_1817789_+	surface antigen	NA	NA	NA	NA
SQG61083.1\|1817914_1818478_+	outer membrane protein	NA	NA	NA	NA
SQG61084.1\|1818486_1819578_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA
SQG61085.1\|1819649_1820105_+	(3R)-hydroxymyristoyl-ACP dehydratase	NA	NA	NA	NA
SQG61086.1\|1820105_1820900_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
SQG61087.1\|1820896_1822078_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
SQG61088.1\|1822064_1822670_+	ribonuclease HII	G9E3X7	Emiliania_huxleyi_virus	8.8e-26	40.2
SQG61089.1\|1822666_1823440_+	RNA methyltransferase	NA	NA	NA	NA
SQG61090.1\|1823451_1824279_-	Putative phosphotransferase ydiA	NA	NA	NA	NA
SQG61091.1\|1824440_1826804_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	2.2e-165	35.9
SQG61092.1\|1826871_1827591_-	class-I glutamine amidotransferase)	NA	NA	NA	NA
SQG61093.1\|1827714_1828140_+	membrane protein	NA	NA	NA	NA
SQG61094.1\|1828174_1829125_-\|transposase	transposase	NA	NA	NA	NA
SQG61095.1\|1829242_1830169_+	membrane protein	NA	NA	NA	NA
SQG61096.1\|1830234_1831392_+	membrane protein	A0A127AWB9	Bacillus_phage	2.3e-14	36.2
SQG61097.1\|1831372_1831840_-	ssrA-binding protein	W5RAM5	Staphylococcus_phage	6.2e-27	45.1
SQG61098.1\|1831987_1832938_+\|transposase	transposase	NA	NA	NA	NA
SQG61099.1\|1832954_1833389_+	cyclase	NA	NA	NA	NA
SQG61100.1\|1833378_1833729_+	Uncharacterised protein family (UPF0125)	NA	NA	NA	NA
SQG61101.1\|1833925_1835080_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQG61102.1\|1835076_1836249_+	enoly-CoA hydratase	NA	NA	NA	NA
SQG61103.1\|1836296_1837190_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
SQG61104.1\|1837235_1837673_+	Putative esterase HI_1161	NA	NA	NA	NA
SQG61105.1\|1837732_1838422_+	membrane protein	NA	NA	NA	NA
SQG61106.1\|1838431_1839382_-\|transposase	transposase	NA	NA	NA	NA
SQG61107.1\|1839480_1840443_-	transaldolase B	H6WFR1	Cyanophage	7.5e-11	29.2
SQG61108.1\|1840669_1841824_+	carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	3.3e-53	35.4
SQG61109.1\|1841834_1845077_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
SQG61110.1\|1845226_1845934_+	short chain dehydrogenase	NA	NA	NA	NA
SQG61111.1\|1846098_1846743_-	phosphoglycerate mutase	NA	NA	NA	NA
SQG61112.1\|1846753_1847653_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG61113.1\|1847700_1848786_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.4e-27	37.7
SQG61114.1\|1848782_1850477_-	permease of ABC transporter	NA	NA	NA	NA
SQG61115.1\|1850510_1850669_+	Uncharacterised protein	NA	NA	NA	NA
SQG61116.1\|1850655_1851606_+\|transposase	transposase	NA	NA	NA	NA
SQG61117.1\|1851704_1852655_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_17

2425335 : 2462728

Erysipelothrix_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG61649.1\|2425335_2426286_-\|transposase	transposase	NA	NA	NA	NA
SQG61650.1\|2426367_2427153_-	ABC transporter permease	NA	NA	NA	NA
SQG61651.1\|2427156_2428029_-	ABC transporter permease	NA	NA	NA	NA
SQG61652.1\|2428106_2429246_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG61653.1\|2429604_2430861_+	dioxygenase hydroxylase component	NA	NA	NA	NA
SQG61654.1\|2430866_2431394_+	dioxygenase component	NA	NA	NA	NA
SQG61655.1\|2431404_2432217_+	enoyl-CoA hydratase/isomerase-like protein	NA	NA	NA	NA
SQG61656.1\|2432216_2432939_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA
SQG61657.1\|2432960_2433275_+	ferredoxin	NA	NA	NA	NA
SQG61658.1\|2433292_2434441_+	fatty-acyl-CoA racemase	NA	NA	NA	NA
SQG61659.1\|2434471_2435347_-	esterase	NA	NA	NA	NA
SQG61660.1\|2435343_2436663_-	acyl-CoA ligase	NA	NA	NA	NA
SQG61661.1\|2436735_2437932_-	thiolase	NA	NA	NA	NA
SQG61662.1\|2437942_2439313_-	Predicted nucleic-acid-binding protein containing a Zn-ribbon	NA	NA	NA	NA
SQG61663.1\|2439670_2441494_-	Protein of uncharacterised function (DUF3604)	NA	NA	NA	NA
SQG61664.1\|2442117_2442924_+	lysR-family transcriptional regulator	NA	NA	NA	NA
SQG61665.1\|2443061_2444027_+	lipoprotein	NA	NA	NA	NA
SQG61666.1\|2444125_2445076_+\|transposase	transposase	NA	NA	NA	NA
SQG61667.1\|2445297_2446248_+\|transposase	transposase	NA	NA	NA	NA
SQG61668.1\|2446244_2446547_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG61669.1\|2446706_2447111_+	Group 3 truncated hemoglobin ctb	NA	NA	NA	NA
SQG61670.1\|2447103_2448330_+	NnrS protein	NA	NA	NA	NA
SQG61671.1\|2448326_2448773_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG61672.1\|2448842_2449625_+	exodeoxyribonuclease III	NA	NA	NA	NA
SQG61673.1\|2449666_2451172_+	peptidase	NA	NA	NA	NA
SQG61674.1\|2451457_2452291_-	oxidoreductase	NA	NA	NA	NA
SQG61675.1\|2452248_2452824_-	amidase	NA	NA	NA	NA
SQG61676.1\|2452902_2453697_-	amidase	NA	NA	NA	NA
SQG61677.1\|2453728_2454550_-	putative hydrolase	NA	NA	NA	NA
SQG61678.1\|2454568_2455423_-	polysaccharide deacetylase	NA	NA	NA	NA
SQG61679.1\|2455426_2456398_-	lipoprotein	NA	NA	NA	NA
SQG61680.1\|2456436_2457420_+	transcriptional regulator	NA	NA	NA	NA
SQG61681.1\|2457744_2458695_-\|transposase	transposase	NA	NA	NA	NA
SQG61682.1\|2458681_2459734_-\|transposase	transposase	NA	NA	NA	NA
SQG61683.1\|2459832_2460129_-	Uncharacterised protein	NA	NA	NA	NA
SQG61684.1\|2460303_2461656_+	glutathione reductase	A0A2K5B2C5	Erysipelothrix_phage	2.9e-45	27.6
SQG61685.1\|2461798_2462728_-\|transposase	transposase for IS1663	NA	NA	NA	NA

DBSCAN-SWA_18

2472990 : 2507140

Mycobacterium_phage(25.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG61695.1\|2472990_2473599_-\|protease	Uncharacterized protein, similar to the N-terminal domain of Lon protease	NA	NA	NA	NA
SQG61696.1\|2473773_2474169_+	PhnB protein	NA	NA	NA	NA
SQG61697.1\|2474187_2475627_+	transmembrane efflux protein	A0A0M3UL24	Mycobacterium_phage	7.4e-55	37.4
SQG61698.1\|2475655_2476003_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG61699.1\|2476021_2476972_-\|transposase	transposase	NA	NA	NA	NA
SQG61700.1\|2477070_2477478_-	acetyltransferase	NA	NA	NA	NA
SQG61701.1\|2477624_2478575_+\|transposase	transposase	NA	NA	NA	NA
SQG61702.1\|2478658_2480476_+	ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-37	27.4
SQG61703.1\|2480603_2481197_+	lipoprotein	NA	NA	NA	NA
SQG61704.1\|2481209_2482139_-	metal transporter	NA	NA	NA	NA
SQG61705.1\|2482350_2482773_+	Uncharacterised protein	NA	NA	NA	NA
SQG61706.1\|2483020_2483701_+	GntR family transcriptional regulator	NA	NA	NA	NA
SQG61707.1\|2483749_2485441_+	sulfate transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.0e-42	27.3
SQG61708.1\|2485456_2486008_-	Activator of Hsp90 ATPase homolog 1-like protein	NA	NA	NA	NA
SQG61709.1\|2486004_2486376_-	arsR family transcriptional regulator	NA	NA	NA	NA
SQG61710.1\|2486488_2487325_+	hydrolase-like protein	NA	NA	NA	NA
SQG61711.1\|2487335_2487815_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQG61712.1\|2487957_2488137_+	Protein of unknwon function (DUF3008)	NA	NA	NA	NA
SQG61713.1\|2488266_2489229_-	AraC family transcriptional regulator	NA	NA	NA	NA
SQG61714.1\|2489371_2489728_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG61715.1\|2489717_2490593_-	oxidoreductase	NA	NA	NA	NA
SQG61716.1\|2490691_2491576_+	lysR family transcriptional regulator	NA	NA	NA	NA
SQG61717.1\|2491597_2492893_-	Predicted membrane protein	NA	NA	NA	NA
SQG61718.1\|2492889_2493246_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG61719.1\|2493251_2493710_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG61720.1\|2493841_2494492_+	Putative NAD(P)H-dependent FMN-containing oxidoreductase ywqN	NA	NA	NA	NA
SQG61721.1\|2494579_2496100_-	aldehyde dehydrogenase	NA	NA	NA	NA
SQG61722.1\|2496357_2498223_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA
SQG61723.1\|2498306_2499170_-\|transposase	transposase	NA	NA	NA	NA
SQG61724.1\|2499268_2500219_-\|transposase	transposase	NA	NA	NA	NA
SQG61725.1\|2500455_2501106_-	Inner membrane protein yohK	NA	NA	NA	NA
SQG61726.1\|2501191_2501551_-	integral membrane protein	NA	NA	NA	NA
SQG61727.1\|2501538_2502975_-	biotin synthesis protein	NA	NA	NA	NA
SQG61728.1\|2502971_2503625_-	biotin biosynthesis protein	NA	NA	NA	NA
SQG61729.1\|2503621_2504815_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
SQG61730.1\|2504918_2506193_+	adenosylmethionine-8-amino-7-oxononanoate aminotransferase	A0A1V0SKB7	Klosneuvirus	9.6e-14	28.9
SQG61731.1\|2506189_2507140_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_19

2586818 : 2621011

Chrysochromulina_ericina_virus(14.29%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG61812.1\|2586818_2587769_-\|transposase	transposase	NA	NA	NA	NA
SQG61813.1\|2587969_2588779_+	enoyl-CoA hydratase	NA	NA	NA	NA
SQG61814.1\|2588903_2589854_+\|transposase	transposase	NA	NA	NA	NA
SQG61815.1\|2589850_2590744_-	methylglyoxal synthase	NA	NA	NA	NA
SQG61816.1\|2590868_2591063_-	FeS assembly protein IscX	NA	NA	NA	NA
SQG61817.1\|2591062_2591404_-	ferredoxin, 2Fe-2S	NA	NA	NA	NA
SQG61818.1\|2591413_2593276_-	chaperone protein	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.0e-101	42.4
SQG61819.1\|2593405_2593918_-	chaperone protein	NA	NA	NA	NA
SQG61820.1\|2593920_2594244_-	iron-sulfur cluster assembly protein	A0A2H4N7N5	Lake_Baikal_phage	6.8e-25	52.8
SQG61821.1\|2594245_2594656_-	scaffold protein	A0A218MKD1	uncultured_virus	7.5e-53	79.0
SQG61822.1\|2594693_2595905_-	cysteine desulfurase	NA	NA	NA	NA
SQG61823.1\|2595922_2596435_-	DNA-binding protein	NA	NA	NA	NA
SQG61824.1\|2596650_2597142_-	low molecular weight protein-tyrosine-phosphatase	NA	NA	NA	NA
SQG61825.1\|2597394_2599431_-	excinuclease ABC subunit B	NA	NA	NA	NA
SQG61826.1\|2599508_2600711_+	aromatic-amino-acid aminotransferase	NA	NA	NA	NA
SQG61827.1\|2600839_2601490_+	LexA repressor	A0A2H4JG58	uncultured_Caudovirales_phage	3.3e-10	50.7
SQG61828.1\|2601716_2602793_-	autotransporter	NA	NA	NA	NA
SQG61829.1\|2603047_2603998_-\|transposase	transposase	NA	NA	NA	NA
SQG61830.1\|2604568_2604781_-	lipoprotein	NA	NA	NA	NA
SQG61831.1\|2604798_2605530_-	lipoprotein	NA	NA	NA	NA
SQG61832.1\|2605564_2606206_-	3-oxoadipate CoA-transferase subunit B	NA	NA	NA	NA
SQG61833.1\|2606198_2606915_-	3-oxoadipate CoA-transferase subunit A	NA	NA	NA	NA
SQG61834.1\|2606911_2607325_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQG61835.1\|2607333_2607906_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQG61836.1\|2607898_2609077_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQG61837.1\|2609079_2609856_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
SQG61838.1\|2609877_2611035_-	thiolase	NA	NA	NA	NA
SQG61839.1\|2611031_2611463_-	Predicted nucleic-acid-binding protein containing a Zn-ribbon	NA	NA	NA	NA
SQG61840.1\|2611459_2612257_-	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA
SQG61841.1\|2612276_2612678_-	acyl dehydratase	NA	NA	NA	NA
SQG61842.1\|2612744_2613716_-	putattive exported protein	NA	NA	NA	NA
SQG61843.1\|2613781_2615005_-	acyl-CoA transferase	NA	NA	NA	NA
SQG61844.1\|2615232_2616183_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG61845.1\|2616306_2618760_-\|protease	ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	1.5e-220	52.0
SQG61846.1\|2618948_2620253_-\|protease	ATP-dependent Clp protease ATP-binding subunit	G3M9Z9	Bacillus_virus	3.2e-129	53.8
SQG61847.1\|2620357_2621011_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	6.8e-56	57.5

DBSCAN-SWA_20

2641103 : 2687042

Synechococcus_phage(18.18%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG61865.1\|2641103_2642054_-\|transposase	transposase	NA	NA	NA	NA
SQG61866.1\|2642152_2643103_-\|transposase	transposase	NA	NA	NA	NA
SQG61867.1\|2643201_2644152_-\|transposase	transposase	NA	NA	NA	NA
SQG61868.1\|2644250_2646245_-	methyltransferase	M4QRX9	Synechococcus_phage	4.4e-21	33.3
SQG61869.1\|2646304_2647270_+	riboflavin biosynthesis protein	NA	NA	NA	NA
SQG61870.1\|2647259_2650121_+\|tRNA	isoleucyl-tRNA synthetase	A0A1V0SJ93	Klosneuvirus	1.0e-71	25.5
SQG61871.1\|2650123_2650630_+	lipoprotein signal peptidase	NA	NA	NA	NA
SQG61872.1\|2650734_2651943_+	DNA/pantothenate metabolism flavoprotein	Q9HH70	Methanothermobacter_phage	3.8e-36	30.0
SQG61873.1\|2651944_2652883_-	permease	NA	NA	NA	NA
SQG61874.1\|2653044_2653518_+	AsnC family transcriptional regulator	NA	NA	NA	NA
SQG61875.1\|2653514_2654465_-\|transposase	transposase	NA	NA	NA	NA
SQG61876.1\|2654575_2655016_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG61877.1\|2655144_2656374_-	peptidoglycan-binding protein	NA	NA	NA	NA
SQG61878.1\|2656412_2657303_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG61879.1\|2657308_2658439_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG61880.1\|2658530_2659019_-	Domain of uncharacterised function (DUF1854)	NA	NA	NA	NA
SQG61881.1\|2659015_2660788_-	ABC transporter	W8CYL7	Bacillus_phage	5.7e-57	32.4
SQG61882.1\|2661089_2661305_-	ABC transporter	NA	NA	NA	NA
SQG61883.1\|2661569_2664119_+	cyanophycin synthetase	NA	NA	NA	NA
SQG61884.1\|2664189_2666763_+	cyanphycin synthetase	NA	NA	NA	NA
SQG61885.1\|2667028_2667229_+	CsbD-like	NA	NA	NA	NA
SQG61886.1\|2667260_2667422_+	Small integral membrane protein	NA	NA	NA	NA
SQG61887.1\|2667479_2667818_+	Osmotically-inducible protein Y precursor	NA	NA	NA	NA
SQG61888.1\|2667966_2668917_-\|transposase	transposase	NA	NA	NA	NA
SQG61889.1\|2669015_2669699_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-22	36.6
SQG61890.1\|2669811_2670360_+	acyl-CoA thioesterase	NA	NA	NA	NA
SQG61891.1\|2670341_2672297_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQG61892.1\|2673301_2674165_+	Protein involved in catabolism of external DNA	NA	NA	NA	NA
SQG61893.1\|2674168_2675584_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
SQG61894.1\|2675717_2676446_-	glutaredoxin	A0A1D8KSL1	Synechococcus_phage	9.6e-43	56.8
SQG61895.1\|2676584_2676785_-	heavy metal transport protein	NA	NA	NA	NA
SQG61896.1\|2676960_2677359_+	merR family transcriptional regulator	NA	NA	NA	NA
SQG61897.1\|2677382_2678783_-	23S rRNA 5-methyluridine methyltransferase	A0A2K5B251	Erysipelothrix_phage	7.3e-31	26.5
SQG61898.1\|2678901_2679654_-	Bacterial protein of uncharacterised function (Gcw_chp)	NA	NA	NA	NA
SQG61899.1\|2679942_2680542_-	Uncharacterised protein	NA	NA	NA	NA
SQG61900.1\|2680646_2681426_-	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB	NA	NA	NA	NA
SQG61901.1\|2681422_2682307_-	peptidase	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5
SQG61902.1\|2682324_2683104_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-32	46.9
SQG61903.1\|2683088_2683847_-	stationary-phase survival protein	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	51.2
SQG61904.1\|2683984_2684620_+	glycerol-3-phosphate acyltransferase PlsY	NA	NA	NA	NA
SQG61905.1\|2684974_2685904_+\|transposase	transposase for IS1663	NA	NA	NA	NA
SQG61906.1\|2686001_2687042_-\|protease	glycoprotease	A0A0R6PI74	Moraxella_phage	6.1e-91	51.3

DBSCAN-SWA_21

2705216 : 2765726

uncultured_Caudovirales_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG61924.1\|2705216_2706167_-\|transposase	transposase	NA	NA	NA	NA
SQG61925.1\|2706322_2706649_-	pH adaptation potassium efflux protein	NA	NA	NA	NA
SQG61926.1\|2706645_2706927_-	pH adaptation potassium efflux system protein F	NA	NA	NA	NA
SQG61927.1\|2706926_2707403_-	pH adaptation potassium efflux protein	NA	NA	NA	NA
SQG61928.1\|2707402_2709031_-	pH adaptation potassium efflux protein	NA	NA	NA	NA
SQG61929.1\|2709027_2709372_-	pH adaptation potassium efflux protein	NA	NA	NA	NA
SQG61930.1\|2709371_2712305_-	pH adaptation potassium efflux protein	NA	NA	NA	NA
SQG61931.1\|2712726_2713473_+	putattive exported protein	NA	NA	NA	NA
SQG61932.1\|2713463_2714414_-\|transposase	transposase	NA	NA	NA	NA
SQG61933.1\|2714512_2714809_-	Uncharacterised protein	NA	NA	NA	NA
SQG61934.1\|2714930_2715833_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG61935.1\|2715837_2716551_-	short-chain dehydrogenase	NA	NA	NA	NA
SQG61936.1\|2716564_2717536_-	putattive exported protein	NA	NA	NA	NA
SQG61937.1\|2717639_2719052_+	Uncharacterised protein	NA	NA	NA	NA
SQG61938.1\|2719285_2719636_+	transcriptional regulator	NA	NA	NA	NA
SQG61939.1\|2719639_2720827_+	Arabinose efflux permease	NA	NA	NA	NA
SQG61940.1\|2721000_2721273_+	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.9e-28	71.1
SQG61941.1\|2721250_2721988_+	NADPH-dependent FMN reductase	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-87	68.2
SQG61942.1\|2721984_2722173_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG61943.1\|2722281_2723232_+\|transposase	transposase	NA	NA	NA	NA
SQG61944.1\|2723228_2723657_-	Uncharacterised protein	NA	NA	NA	NA
SQG61945.1\|2723850_2725044_-	sulfatase	NA	NA	NA	NA
SQG61946.1\|2725058_2726021_-	lipoprotein	NA	NA	NA	NA
SQG61947.1\|2726136_2727090_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG61948.1\|2727099_2728092_-	putattive exported protein	NA	NA	NA	NA
SQG61949.1\|2728143_2728899_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
SQG61950.1\|2728963_2729653_-	short chain dehydrogenase	NA	NA	NA	NA
SQG61951.1\|2729874_2730825_+	putative hydrolase	NA	NA	NA	NA
SQG61952.1\|2730855_2732052_+	lactate dehydrogenase	NA	NA	NA	NA
SQG61953.1\|2732048_2732822_+	short-chain dehydrogenase	NA	NA	NA	NA
SQG61954.1\|2732889_2733861_+	putattive exported protein	NA	NA	NA	NA
SQG61955.1\|2733946_2734891_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG61956.1\|2734868_2735738_-	alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase	NA	NA	NA	NA
SQG61957.1\|2735981_2736605_+	glutathione S-transferase	NA	NA	NA	NA
SQG61958.1\|2736746_2736917_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG61959.1\|2736919_2737219_+	DNA-binding protein	NA	NA	NA	NA
SQG61960.1\|2737232_2740307_-	autotransporter	NA	NA	NA	NA
SQG61961.1\|2740436_2741111_+	response regulatory protein	NA	NA	NA	NA
SQG61962.1\|2741103_2742918_+	two-component sensor histidine kinase	NA	NA	NA	NA
SQG61963.1\|2742971_2743919_-	Uncharacterised protein	NA	NA	NA	NA
SQG61964.1\|2744023_2744974_+\|transposase	transposase	NA	NA	NA	NA
SQG61965.1\|2744953_2745448_-	Predicted spermidine synthase with an N-terminal membrane domain	NA	NA	NA	NA
SQG61966.1\|2745526_2747152_-	arylsulfatase protein	A0A2P0VMN7	Tetraselmis_virus	2.0e-149	52.2
SQG61967.1\|2747201_2748236_-	nonspecific acid phosphatase	NA	NA	NA	NA
SQG61968.1\|2748238_2749585_-	Uncharacterised protein	NA	NA	NA	NA
SQG61969.1\|2749581_2751096_-	Predicted O-linked N-acetylglucosamine transferase, SPINDLY family	NA	NA	NA	NA
SQG61970.1\|2751086_2752574_-	VWFA-related Acidobacterial domain	NA	NA	NA	NA
SQG61971.1\|2752570_2753512_-	Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)	NA	NA	NA	NA
SQG61972.1\|2753520_2754489_-	regulatory protein	NA	NA	NA	NA
SQG61973.1\|2754544_2754997_-	Serine/threonine-protein kinase pkn1	NA	NA	NA	NA
SQG61974.1\|2756028_2756997_+	Protein involved in meta-pathway of phenol degradation	NA	NA	NA	NA
SQG61975.1\|2757174_2758164_+	putattive exported protein	NA	NA	NA	NA
SQG61976.1\|2758210_2758969_+	short-chain dehydrogenase	NA	NA	NA	NA
SQG61977.1\|2759158_2759896_+	membrane protein	A0A0S4KZH7	Pseudomonas_phage	4.1e-41	46.6
SQG61978.1\|2759994_2760945_+\|transposase	transposase	NA	NA	NA	NA
SQG61979.1\|2761129_2761912_+	high-affinity branched-chain amino acid transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.0e-09	25.8
SQG61980.1\|2761905_2762607_+	high-affinity branched-chain amino acid transporter ATP-binding protein	NA	NA	NA	NA
SQG61981.1\|2762846_2763449_+	TetR family transcriptional regulator	NA	NA	NA	NA
SQG61982.1\|2763424_2764312_-	putative oxidoreductase	NA	NA	NA	NA
SQG61983.1\|2764775_2765726_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_22

2805003 : 2857068

Ectocarpus_siliculosus_virus(11.11%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG62018.1\|2805003_2805954_+\|transposase	transposase	NA	NA	NA	NA
SQG62019.1\|2805973_2806879_-	pirin-like protein	NA	NA	NA	NA
SQG62020.1\|2806956_2807655_-	pirin-like protein	NA	NA	NA	NA
SQG62021.1\|2807814_2808759_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG62022.1\|2808768_2810256_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA
SQG62023.1\|2810255_2811323_-	nitrogen regulation protein NR(II)	Q8QKV7	Ectocarpus_siliculosus_virus	1.1e-05	23.5
SQG62024.1\|2811386_2812799_-	glutamine synthetase	NA	NA	NA	NA
SQG62025.1\|2812984_2814205_-	porphyrin oxidoreductase	NA	NA	NA	NA
SQG62026.1\|2814226_2815177_-\|transposase	transposase	NA	NA	NA	NA
SQG62027.1\|2815275_2815917_-	deoxyribonucleotide triphosphate pyrophosphatase	NA	NA	NA	NA
SQG62028.1\|2816043_2817846_+	signaling protein	NA	NA	NA	NA
SQG62029.1\|2817723_2819415_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-10	27.1
SQG62030.1\|2819497_2820403_-	transcriptional regulator	NA	NA	NA	NA
SQG62031.1\|2820584_2821961_+	catabolic enzyme	NA	NA	NA	NA
SQG62032.1\|2822127_2822868_-	ribonuclease PH	NA	NA	NA	NA
SQG62033.1\|2823004_2823931_+	YicC-like family, N-terminal region	NA	NA	NA	NA
SQG62034.1\|2824203_2824359_+	Uncharacterised protein	NA	NA	NA	NA
SQG62035.1\|2824371_2824500_+	Uncharacterised protein	NA	NA	NA	NA
SQG62036.1\|2824496_2824781_+	DNA-binding protein	NA	NA	NA	NA
SQG62037.1\|2824839_2826330_-	nucleosidase	NA	NA	NA	NA
SQG62038.1\|2826574_2827174_+	lipoprotein	A0A0A8WF62	Clostridium_phage	1.4e-20	41.6
SQG62039.1\|2827178_2827949_-	oxidoreductase	NA	NA	NA	NA
SQG62040.1\|2828186_2828900_+	cytochrome C	NA	NA	NA	NA
SQG62041.1\|2828896_2829814_+	cytochrome C	NA	NA	NA	NA
SQG62042.1\|2829949_2830582_+	guanylate kinase	A0A218KC48	Bacillus_phage	2.4e-13	33.9
SQG62043.1\|2830623_2830827_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
SQG62044.1\|2830851_2833131_+	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	5.9e-06	32.1
SQG62045.1\|2833143_2833872_-	glutamine transport ATP-binding protein	G9BWD6	Planktothrix_phage	3.3e-35	39.3
SQG62046.1\|2833868_2834468_-	glutamine transport system permease	NA	NA	NA	NA
SQG62047.1\|2834596_2835349_-	glutamine-binding periplasmic protein	NA	NA	NA	NA
SQG62048.1\|2835530_2836481_-\|transposase	transposase	NA	NA	NA	NA
SQG62049.1\|2836889_2837288_+	membrane-associated peptidase	NA	NA	NA	NA
SQG62050.1\|2837373_2838279_+	dihydrodipicolinate synthase	NA	NA	NA	NA
SQG62051.1\|2838296_2839418_+	lipoprotein	NA	NA	NA	NA
SQG62052.1\|2839506_2840151_-	serotype 3 fimbrial subunit	NA	NA	NA	NA
SQG62053.1\|2840778_2841966_-	Cupin superfamily protein	NA	NA	NA	NA
SQG62054.1\|2841962_2844560_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.5e-21	22.6
SQG62055.1\|2844814_2845030_+	Protein of uncharacterised function (DUF1458)	NA	NA	NA	NA
SQG62056.1\|2845485_2846040_-	chromate reductase	A0A2P0ZL82	Lactobacillus_phage	1.7e-15	32.0
SQG62057.1\|2846310_2846868_+	membrane protein	NA	NA	NA	NA
SQG62058.1\|2846979_2848284_+	Uncharacterized iron-regulated protein	NA	NA	NA	NA
SQG62059.1\|2848379_2849792_+	Predicted thiol oxidoreductase	NA	NA	NA	NA
SQG62060.1\|2849897_2850899_+	Predicted periplasmic lipoprotein	NA	NA	NA	NA
SQG62061.1\|2850879_2852001_+	Protein of uncharacterised function (DUF1513)	NA	NA	NA	NA
SQG62062.1\|2852099_2853050_+\|transposase	transposase	NA	NA	NA	NA
SQG62063.1\|2853046_2853673_-	translation factor	NA	NA	NA	NA
SQG62064.1\|2853732_2854584_+\|protease	Predicted metalloprotease	A0A1I9SA48	Rhodococcus_phage	7.0e-37	35.3
SQG62065.1\|2854750_2855287_+	Uncharacterised protein	NA	NA	NA	NA
SQG62066.1\|2855283_2856048_+	Uncharacterised protein	NA	NA	NA	NA
SQG62067.1\|2856117_2857068_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_23

2870380 : 2917964

Planktothrix_phage(15.38%)

transposase,integrase,tRNA,protease

attL 2856117:2856176|attR 2915830:2916883

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2856117:2856176	attL	NA	NA	NA	NA
SQG62076.1\|2870380_2871331_-\|transposase	transposase	NA	NA	NA	NA
SQG62077.1\|2871429_2871798_-	Uncharacterised protein	NA	NA	NA	NA
SQG62078.1\|2871903_2872482_-\|protease	intracellular protease, PfpI family	NA	NA	NA	NA
SQG62079.1\|2872599_2873127_-	regulatory protein	NA	NA	NA	NA
SQG62080.1\|2873101_2874034_-\|integrase	integrase/recombinase	A0A0K2CP59	Brevibacillus_phage	2.3e-25	29.5
SQG62081.1\|2874071_2874959_-	LysR familyt ranscriptional regulator	Q6JIH3	Burkholderia_virus	3.4e-18	28.7
SQG62082.1\|2875116_2876811_+	thiamine pyrophosphate protein	E5ERI2	Ostreococcus_lucimarinus_virus	3.8e-26	24.5
SQG62083.1\|2876890_2878084_+	glutaryl-CoA dehydrogenase	NA	NA	NA	NA
SQG62084.1\|2878221_2878665_-	dehydratase	NA	NA	NA	NA
SQG62085.1\|2878798_2880358_-	thiamine-pyrophosphate-requiring enzyme	NA	NA	NA	NA
SQG62086.1\|2880486_2881167_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.8e-28	38.9
SQG62087.1\|2881260_2881953_-	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA
SQG62088.1\|2881975_2882767_-	amino acid-binding periplasmic protein	NA	NA	NA	NA
SQG62089.1\|2882793_2883699_-	arginase	NA	NA	NA	NA
SQG62090.1\|2883891_2884728_-	transcriptional regulator	NA	NA	NA	NA
SQG62091.1\|2884819_2885842_-	extracellular substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	1.6e-67	40.7
SQG62092.1\|2885978_2887016_-	translation factor	S4VW33	Pandoravirus	3.6e-35	37.8
SQG62093.1\|2887035_2888226_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
SQG62094.1\|2888228_2888744_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	7.0e-16	42.6
SQG62095.1\|2888893_2889373_-	disulfide bond formation protein B	NA	NA	NA	NA
SQG62096.1\|2889380_2889545_-	Uncharacterised protein	NA	NA	NA	NA
SQG62097.1\|2889636_2890038_-	DNA-binding protein	NA	NA	NA	NA
SQG62098.1\|2890040_2890214_-	mRNA interferase MqsR	NA	NA	NA	NA
SQG62099.1\|2890346_2891228_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0M4JBD3	Mollivirus	1.8e-51	36.1
SQG62100.1\|2891452_2891899_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG62101.1\|2891983_2893048_-	fructose-1,6-bisphosphate aldolase	NA	NA	NA	NA
SQG62102.1\|2893184_2893766_-	molybdenum cofactor biosynthesis protein MoaC /MOSC-domain-containing protein	NA	NA	NA	NA
SQG62103.1\|2894000_2895131_+	LuxR family transcriptional regulator	NA	NA	NA	NA
SQG62104.1\|2895308_2896535_+	formamidase	A0A1V0S8X7	Catovirus	5.2e-134	58.8
SQG62105.1\|2896593_2897109_+	transporter protein	NA	NA	NA	NA
SQG62106.1\|2897131_2897458_+	putative regulatory protein, FmdB family	NA	NA	NA	NA
SQG62107.1\|2897491_2898682_+	formate dehydrogenase	NA	NA	NA	NA
SQG62108.1\|2898755_2899160_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG62109.1\|2899376_2900327_-\|transposase	transposase	NA	NA	NA	NA
SQG62110.1\|2900425_2901196_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.3e-29	39.5
SQG62111.1\|2901192_2901864_-	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA
SQG62112.1\|2901860_2902502_-	binding-protein-dependent transport system inner membrane protein	NA	NA	NA	NA
SQG62113.1\|2902514_2903435_-	extracellular substrate-binding protein	NA	NA	NA	NA
SQG62114.1\|2903595_2904756_-	ABC transporter substrate binding protein	NA	NA	NA	NA
SQG62115.1\|2904797_2905748_-	ornithine cyclodeaminase	NA	NA	NA	NA
SQG62116.1\|2906412_2906613_-	Uncharacterised protein	NA	NA	NA	NA
SQG62117.1\|2906735_2908430_-	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
SQG62118.1\|2908551_2908821_-	phosphocarrier protein HPr	NA	NA	NA	NA
SQG62119.1\|2908936_2909335_-	PTS system IIa component	NA	NA	NA	NA
SQG62120.1\|2909345_2910302_-	glutathione synthetase	NA	NA	NA	NA
SQG62121.1\|2910438_2910933_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.1e-13	30.5
SQG62122.1\|2911004_2912954_-\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	4.1e-125	36.0
SQG62123.1\|2913341_2914118_+	two-component response regulator	NA	NA	NA	NA
SQG62124.1\|2914123_2914516_+	Uncharacterised protein	NA	NA	NA	NA
SQG62125.1\|2914512_2914920_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
SQG62126.1\|2914937_2915888_+\|transposase	transposase	NA	NA	NA	NA
SQG62127.1\|2915884_2916523_-	signaling protein	A0A127AWB9	Bacillus_phage	2.0e-20	37.3
SQG62128.1\|2917013_2917964_-\|transposase	transposase	NA	NA	NA	NA
2915830:2916883	attR	NA	NA	NA	NA

DBSCAN-SWA_24

3047799 : 3088468

Salmonella_phage(33.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG62254.1\|3047799_3048750_-\|transposase	transposase	NA	NA	NA	NA
SQG62255.1\|3048860_3049043_+	Uncharacterised protein	NA	NA	NA	NA
SQG62256.1\|3049142_3049736_-	lipoprotein	NA	NA	NA	NA
SQG62257.1\|3049922_3051014_+	Uncharacterised protein	NA	NA	NA	NA
SQG62258.1\|3051513_3051924_-	merR family transcriptional regulator	NA	NA	NA	NA
SQG62259.1\|3051982_3052312_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.7e-13	42.2
SQG62260.1\|3052329_3054747_-\|tRNA	phenylalanyl-tRNA synthetase subunit beta	NA	NA	NA	NA
SQG62261.1\|3054759_3055782_-\|tRNA	phenylalanyl-tRNA synthetase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.0e-26	38.6
SQG62262.1\|3055856_3056216_-	50S ribosomal protein L20	NA	NA	NA	NA
SQG62263.1\|3056231_3056429_-	50S ribosomal protein L35	NA	NA	NA	NA
SQG62264.1\|3056764_3057715_-\|transposase	transposase	NA	NA	NA	NA
SQG62265.1\|3057909_3058359_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	S4TNT3	Salmonella_phage	3.7e-45	67.2
SQG62266.1\|3058355_3059306_-\|transposase	transposase	NA	NA	NA	NA
SQG62267.1\|3059416_3060865_+	GntR family transcriptional regulator	NA	NA	NA	NA
SQG62268.1\|3060979_3061225_-	Uncharacterised protein	NA	NA	NA	NA
SQG62269.1\|3061364_3062315_+\|transposase	transposase	NA	NA	NA	NA
SQG62270.1\|3062559_3063273_-	biotin biosynthesis protein BioC	NA	NA	NA	NA
SQG62271.1\|3063395_3063623_-	acetyltransferase	NA	NA	NA	NA
SQG62272.1\|3063917_3064556_-	DedA family integral membrane protein	NA	NA	NA	NA
SQG62273.1\|3064664_3065699_+	integral membrane protein	NA	NA	NA	NA
SQG62274.1\|3065695_3066646_-\|transposase	transposase	NA	NA	NA	NA
SQG62275.1\|3066663_3067053_+	regulatory protein	NA	NA	NA	NA
SQG62276.1\|3067061_3067586_-	DNA-binding protein	J9Q7G7	Salmonella_phage	6.5e-09	32.9
SQG62277.1\|3067589_3067859_-	Uncharacterised protein	NA	NA	NA	NA
SQG62278.1\|3068057_3069119_-	LacI family transcriptional regulator	NA	NA	NA	NA
SQG62279.1\|3069202_3070837_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-15	31.1
SQG62280.1\|3070838_3071693_-	ABC transporter protein inner membrane protein	NA	NA	NA	NA
SQG62281.1\|3071670_3072630_-	ABC transporter protein inner membrane protein	NA	NA	NA	NA
SQG62282.1\|3072633_3074145_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG62283.1\|3074184_3075240_-	peptidase	NA	NA	NA	NA
SQG62284.1\|3075620_3076091_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQG62285.1\|3076126_3076738_-	membrane transport protein	NA	NA	NA	NA
SQG62286.1\|3076768_3077392_-	negative transcriptional regulator	NA	NA	NA	NA
SQG62287.1\|3077472_3079005_+	GntR family transcriptional regulator	NA	NA	NA	NA
SQG62288.1\|3079039_3080257_-	multidrug efflux system protein MdtL	NA	NA	NA	NA
SQG62289.1\|3080324_3081356_-	alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.8e-26	27.8
SQG62290.1\|3081352_3082522_-	Putrescine oxidase	NA	NA	NA	NA
SQG62291.1\|3082515_3083196_-	anti-sigma factor, putative, ChrR family	NA	NA	NA	NA
SQG62292.1\|3083357_3084200_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG62293.1\|3084362_3085334_-	AraC family transcriptional regulator	NA	NA	NA	NA
SQG62294.1\|3086406_3087477_-	Predicted membrane protein	NA	NA	NA	NA
SQG62295.1\|3087517_3088468_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_25

3114615 : 3182146

Bacillus_virus(14.29%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG62318.1\|3114615_3115566_-\|transposase	transposase	NA	NA	NA	NA
SQG62319.1\|3115629_3115911_+	putattive exported protein	NA	NA	NA	NA
SQG62320.1\|3115981_3118618_-	GTP-binding protein	NA	NA	NA	NA
SQG62321.1\|3118614_3119739_-	exonuclease	NA	NA	NA	NA
SQG62322.1\|3119735_3121118_-	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA
SQG62323.1\|3121253_3121721_+	leucine-responsive regulatory protein	NA	NA	NA	NA
SQG62324.1\|3121842_3122511_+	membrane protein	NA	NA	NA	NA
SQG62325.1\|3122640_3123786_+	lipoprotein	NA	NA	NA	NA
SQG62326.1\|3123787_3125518_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG62327.1\|3125635_3125944_-	integral membrane protein	NA	NA	NA	NA
SQG62328.1\|3125956_3126769_-	ABC transporter inner membrane protein	NA	NA	NA	NA
SQG62329.1\|3126761_3127184_-	ABC transporter inner membrane protein	NA	NA	NA	NA
SQG62330.1\|3127649_3129815_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-14	28.1
SQG62331.1\|3129940_3130729_+	glycerol-3-phosphate regulon repressor protein	A0A077SK06	Escherichia_phage	2.0e-22	30.4
SQG62332.1\|3130768_3132373_+	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
SQG62333.1\|3132453_3133194_+	IclR family regulatory protein	NA	NA	NA	NA
SQG62334.1\|3133201_3133696_-	oxidoreductase	NA	NA	NA	NA
SQG62335.1\|3134068_3135046_-	putattive exported protein	NA	NA	NA	NA
SQG62336.1\|3135084_3136467_-	reductase flavoprotein subunit	A0A2P0ZL82	Lactobacillus_phage	7.9e-30	28.4
SQG62337.1\|3136499_3137360_-	Predicted metal-dependent hydrolase of the TIM-barrel fold	NA	NA	NA	NA
SQG62338.1\|3137609_3137882_-	Uncharacterised protein	NA	NA	NA	NA
SQG62339.1\|3138441_3139245_+	Ser/Thr-rich protein T10	NA	NA	NA	NA
SQG62340.1\|3139303_3139741_+	Uncharacterised protein	NA	NA	NA	NA
SQG62341.1\|3139831_3140803_-	lipoprotein	NA	NA	NA	NA
SQG62342.1\|3140841_3141786_-	dihydrodipicolinate synthase	NA	NA	NA	NA
SQG62343.1\|3142004_3142691_+	IclR-family regulatory protein	NA	NA	NA	NA
SQG62344.1\|3142767_3143142_-	MAPEG family	NA	NA	NA	NA
SQG62345.1\|3143248_3143941_-	integral membrane protein	NA	NA	NA	NA
SQG62346.1\|3143933_3144350_-\|tRNA	peptidyl-tRNA hydrolase domain-containing protein	NA	NA	NA	NA
SQG62347.1\|3144460_3145093_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA
SQG62348.1\|3145121_3145565_+	6-pyruvoyl tetrahydrobiopterin synthase	NA	NA	NA	NA
SQG62349.1\|3145586_3146678_-	periplasmic solute-binding protein	NA	NA	NA	NA
SQG62350.1\|3146732_3147533_-	aldolase	NA	NA	NA	NA
SQG62351.1\|3147707_3148289_+	transcriptional regulator	NA	NA	NA	NA
SQG62352.1\|3148428_3148902_+	marR family transcriptional regulator	NA	NA	NA	NA
SQG62353.1\|3148898_3149960_+	multidrug efflux protein	NA	NA	NA	NA
SQG62354.1\|3150041_3150992_+\|transposase	transposase	NA	NA	NA	NA
SQG62355.1\|3150988_3158650_-	adhesin	A0A0R6PJK4	Moraxella_phage	7.3e-24	30.9
SQG62356.1\|3158890_3162937_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	6.3e-160	67.4
SQG62357.1\|3163294_3163831_+	integral membrane protein	NA	NA	NA	NA
SQG62358.1\|3163827_3165126_+	membrane permease	NA	NA	NA	NA
SQG62359.1\|3165205_3166234_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG62360.1\|3166494_3167445_+\|transposase	transposase	NA	NA	NA	NA
SQG62361.1\|3167441_3168392_-\|transposase	IS1002 transposase	NA	NA	NA	NA
SQG62362.1\|3168708_3169314_+	fimbrial protein	NA	NA	NA	NA
SQG62363.1\|3169367_3170681_-	phenylacetate-coenzyme A ligase	NA	NA	NA	NA
SQG62364.1\|3170755_3171226_-	phenylacetic acid degradation protein	NA	NA	NA	NA
SQG62365.1\|3171225_3172014_-	enoyl-CoA hydratase	NA	NA	NA	NA
SQG62366.1\|3172024_3173677_-	oxidoreductase	NA	NA	NA	NA
SQG62367.1\|3173764_3174715_-\|transposase	transposase	NA	NA	NA	NA
SQG62368.1\|3174701_3175865_-	phenylacetic acid degradation NADH oxidoreductase	V5UTY8	Synechococcus_phage	5.9e-10	46.7
SQG62369.1\|3175876_3176383_-	phenylacetic acid degradation protein	NA	NA	NA	NA
SQG62370.1\|3176379_3177144_-	phenylacetic acid degradation protein	NA	NA	NA	NA
SQG62371.1\|3177159_3177444_-	phenylacetate-CoA oxygenase subunit PaaB	NA	NA	NA	NA
SQG62372.1\|3177508_3178498_-	phenylacetate-CoA oxygenase subunit PaaA	NA	NA	NA	NA
SQG62373.1\|3178669_3179599_+	phenylacetic acid degradation operon negative regulatory protein	NA	NA	NA	NA
SQG62374.1\|3179570_3180257_-	Nicotinamide nucleotide repair protein	NA	NA	NA	NA
SQG62375.1\|3180290_3180836_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-26	37.7
SQG62376.1\|3180880_3182146_+\|protease	integral membrane zinc-metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_26

3198640 : 3246348

Pelagibacter_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG62393.1\|3198640_3199591_-\|transposase	transposase	NA	NA	NA	NA
SQG62394.1\|3199725_3200832_+	molybdenum-binding protein	NA	NA	NA	NA
SQG62395.1\|3200842_3201940_+	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
SQG62396.1\|3202084_3203290_-	molybdopterin cofactor biosynthesis protein	NA	NA	NA	NA
SQG62397.1\|3203296_3203818_-	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
SQG62398.1\|3203814_3204297_-	molybdopterin converting factor	NA	NA	NA	NA
SQG62399.1\|3204302_3204554_-	molybdopterin converting factor	NA	NA	NA	NA
SQG62400.1\|3204534_3205020_-	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
SQG62401.1\|3205155_3208617_+	Uncharacterized protein involved in outer membrane biogenesis	NA	NA	NA	NA
SQG62402.1\|3208634_3209519_+	hydrolase	NA	NA	NA	NA
SQG62403.1\|3209528_3209960_-	lipoprotein	NA	NA	NA	NA
SQG62404.1\|3210206_3210710_+	AhpC/TSA-family protein	M1I839	Pelagibacter_phage	1.8e-24	44.1
SQG62405.1\|3210721_3212188_+	membrane transport protein	NA	NA	NA	NA
SQG62406.1\|3212262_3213138_-	membrane protein	NA	NA	NA	NA
SQG62407.1\|3213134_3214142_-	biotin synthase	NA	NA	NA	NA
SQG62408.1\|3214609_3214915_+	Uncharacterised protein	NA	NA	NA	NA
SQG62409.1\|3215005_3215596_+	TetR family transcriptional regulator	NA	NA	NA	NA
SQG62410.1\|3215786_3216716_-\|transposase	transposase for IS1663	NA	NA	NA	NA
SQG62411.1\|3216994_3219331_-	membrane transport ATPase	E4ZFI9	Streptococcus_phage	3.2e-124	42.8
SQG62412.1\|3219413_3219848_+	merR family transcriptional regulator	NA	NA	NA	NA
SQG62413.1\|3219946_3220897_+\|transposase	transposase	NA	NA	NA	NA
SQG62414.1\|3220995_3221946_+\|transposase	transposase	NA	NA	NA	NA
SQG62415.1\|3221942_3222737_-	N-formylglutamate amidohydrolase	NA	NA	NA	NA
SQG62416.1\|3222768_3223473_-	oxidoreductase	NA	NA	NA	NA
SQG62417.1\|3223547_3224348_-	exported SurF1 family protein	NA	NA	NA	NA
SQG62418.1\|3224344_3224752_-	cytochrome ubiquinol oxidase subunit IV	NA	NA	NA	NA
SQG62419.1\|3224748_3225390_-	cytochrome ubiquinol oxidase subunit III	NA	NA	NA	NA
SQG62420.1\|3225382_3227404_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
SQG62421.1\|3227440_3227932_-	ubiquinol oxidase subunit II	NA	NA	NA	NA
SQG62422.1\|3227933_3228374_-	ubiquinol oxidase subunit II	NA	NA	NA	NA
SQG62423.1\|3228643_3229975_+	membrane transport protein	NA	NA	NA	NA
SQG62424.1\|3229971_3230922_-\|transposase	transposase	NA	NA	NA	NA
SQG62425.1\|3231020_3231479_-	chelatase	NA	NA	NA	NA
SQG62426.1\|3231475_3232522_-	chelatase	NA	NA	NA	NA
SQG62427.1\|3232628_3232895_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG62428.1\|3233602_3233941_+	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQG62429.1\|3233966_3234692_+	ammonium transporter	NA	NA	NA	NA
SQG62430.1\|3234688_3235207_+	ammonium transporter	NA	NA	NA	NA
SQG62431.1\|3235269_3237390_-	autotransporter	NA	NA	NA	NA
SQG62432.1\|3237526_3238255_-	autotransporter	NA	NA	NA	NA
SQG62433.1\|3238493_3239096_-	TetR family transcriptional regulator	NA	NA	NA	NA
SQG62434.1\|3239192_3240482_+	membrane transport protein	NA	NA	NA	NA
SQG62435.1\|3240539_3241271_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-12	31.0
SQG62436.1\|3241267_3242071_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.9e-14	23.5
SQG62437.1\|3242067_3243156_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
SQG62438.1\|3243152_3244082_-	ABC transporter inner membrane protein	NA	NA	NA	NA
SQG62439.1\|3244230_3245376_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG62440.1\|3245397_3246348_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_27

3254345 : 3309999

uncultured_Mediterranean_phage(33.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG62445.1\|3254345_3256661_-\|protease	ATP-dependent clp protease ATP-binding	A0A223W0B1	Agrobacterium_phage	4.1e-164	41.9
SQG62446.1\|3256716_3258885_-	penicillin-binding protein	NA	NA	NA	NA
SQG62447.1\|3258881_3264062_-	peptidase inhibitor	NA	NA	NA	NA
SQG62448.1\|3264160_3264475_-\|protease	ATP-dependent Clp protease adaptor protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.2e-10	43.8
SQG62449.1\|3265069_3265561_+	exported protein	A0A1B1IUW8	uncultured_Mediterranean_phage	4.8e-14	42.2
SQG62450.1\|3265660_3266866_-	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA
SQG62451.1\|3266981_3268379_-	chloride-channel protein	NA	NA	NA	NA
SQG62452.1\|3268495_3269074_-	superoxide dismutase	NA	NA	NA	NA
SQG62453.1\|3270705_3271656_-\|transposase	transposase	NA	NA	NA	NA
SQG62454.1\|3271936_3272557_+	biopolymer transport protein	NA	NA	NA	NA
SQG62455.1\|3272553_3272967_+	biopolymer transport protein	NA	NA	NA	NA
SQG62456.1\|3272963_3274007_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
SQG62457.1\|3274062_3274251_+	Trm112p-like protein	NA	NA	NA	NA
SQG62458.1\|3274260_3275025_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
SQG62459.1\|3275115_3275772_+	adenylate kinase	NA	NA	NA	NA
SQG62460.1\|3275863_3276622_+	short-chain dehydrogenase	NA	NA	NA	NA
SQG62461.1\|3276647_3278249_+	integral membrane protein	NA	NA	NA	NA
SQG62462.1\|3278449_3279454_+	transmembrane sensor protein	NA	NA	NA	NA
SQG62463.1\|3279554_3279818_+	30S ribosomal protein S20	NA	NA	NA	NA
SQG62464.1\|3279935_3280703_-	aldolase	NA	NA	NA	NA
SQG62465.1\|3280762_3281197_-	lipoprotein	NA	NA	NA	NA
SQG62466.1\|3281302_3282253_+\|transposase	transposase	NA	NA	NA	NA
SQG62467.1\|3282249_3282801_-	lipoprotein	NA	NA	NA	NA
SQG62468.1\|3282846_3283629_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
SQG62469.1\|3283628_3284588_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
SQG62470.1\|3284636_3285749_-	malate dehydrogenase	NA	NA	NA	NA
SQG62471.1\|3285805_3286756_-\|transposase	transposase	NA	NA	NA	NA
SQG62472.1\|3286964_3287186_-	lipoprotein	NA	NA	NA	NA
SQG62473.1\|3287399_3288806_-	threonine synthase	NA	NA	NA	NA
SQG62474.1\|3288802_3290107_-	homoserine dehydrogenase	NA	NA	NA	NA
SQG62475.1\|3290103_3291291_-	aminotransferase	NA	NA	NA	NA
SQG62476.1\|3291507_3291960_+	Protein of uncharacterised function (DUF498/DUF598)	NA	NA	NA	NA
SQG62477.1\|3291962_3292427_+	antioxidant protein	NA	NA	NA	NA
SQG62478.1\|3292506_3294186_+	PhoH-like protein	A0A2I7SAD7	Vibrio_phage	7.3e-70	36.7
SQG62479.1\|3294290_3295268_+	4-hydroxythreonine-4-phosphate dehydrogenase	NA	NA	NA	NA
SQG62480.1\|3295347_3296316_+	membrane protein	NA	NA	NA	NA
SQG62481.1\|3296336_3297710_-	replicative DNA helicase	C7BGG1	Burkholderia_phage	4.0e-135	58.2
SQG62482.1\|3297706_3298543_-	serine/threonine protein kinase	NA	NA	NA	NA
SQG62483.1\|3298659_3299115_-	50s ribosomal protein l9	NA	NA	NA	NA
SQG62484.1\|3299130_3299403_-	30S ribosomal protein S18	NA	NA	NA	NA
SQG62485.1\|3299495_3299744_-	primosomal replication protein n	NA	NA	NA	NA
SQG62486.1\|3299866_3300247_-	30s ribosomal protein s6	NA	NA	NA	NA
SQG62487.1\|3300466_3301264_-	GTP cyclohydrolase	NA	NA	NA	NA
SQG62488.1\|3301420_3303283_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
SQG62489.1\|3303332_3304244_-	geranyltranstransferase	NA	NA	NA	NA
SQG62490.1\|3304248_3304515_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
SQG62491.1\|3304601_3305432_-	transcriptional regulator	NA	NA	NA	NA
SQG62492.1\|3305606_3306572_+	putattive exported protein	NA	NA	NA	NA
SQG62493.1\|3306742_3307753_+	integral membrane protein	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	3.6e-16	24.6
SQG62494.1\|3307900_3309052_+	iron-sulfur protein	NA	NA	NA	NA
SQG62495.1\|3309135_3309999_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_28

3317142 : 3371373

Planktothrix_phage(16.67%)

transposase,tRNA,integrase

attL 3326756:3326815|attR 3355284:3356330

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG62502.1\|3317142_3318093_-\|transposase	transposase	NA	NA	NA	NA
SQG62503.1\|3318213_3319110_-	inositol monophosphatase-family protein	NA	NA	NA	NA
SQG62504.1\|3319267_3320455_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC	NA	NA	NA	NA
SQG62505.1\|3320400_3321093_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC	NA	NA	NA	NA
SQG62506.1\|3321387_3323613_+	glycosyl hydrolase	NA	NA	NA	NA
SQG62507.1\|3323777_3324866_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.7e-32	36.4
SQG62508.1\|3324822_3325476_+	ABC transporter inner membrane protein	NA	NA	NA	NA
SQG62509.1\|3325523_3326321_+	D-methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
3326756:3326815	attL	NA	NA	NA	NA
SQG62510.1\|3326852_3327803_+\|transposase	transposase	NA	NA	NA	NA
SQG62511.1\|3327883_3329032_+	alcohol dehydrogenase	NA	NA	NA	NA
SQG62512.1\|3329088_3330039_-\|transposase	transposase	NA	NA	NA	NA
SQG62513.1\|3330137_3330443_-	Putative monooxygenase ycnE	NA	NA	NA	NA
SQG62514.1\|3330471_3330906_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQG62515.1\|3330907_3332152_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQG62516.1\|3332148_3332799_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQG62517.1\|3332873_3333857_-	putattive exported protein	NA	NA	NA	NA
SQG62518.1\|3334204_3334552_+	Uncharacterised protein	NA	NA	NA	NA
SQG62519.1\|3334548_3335007_+	catabolic enzyme	NA	NA	NA	NA
SQG62520.1\|3335022_3335922_+	catabolic enzyme	NA	NA	NA	NA
SQG62521.1\|3335918_3336785_+	ABC transporter inner membrane protein	NA	NA	NA	NA
SQG62522.1\|3336771_3337599_+	ABC transporter inner membrane protein	NA	NA	NA	NA
SQG62523.1\|3337609_3338737_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-23	32.3
SQG62524.1\|3338729_3339722_+	Alkyl hydroperoxide reductase, large subunit	NA	NA	NA	NA
SQG62525.1\|3339814_3341053_+\|transposase	transposase	NA	NA	NA	NA
SQG62526.1\|3341097_3342357_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQG62527.1\|3342363_3343116_+	DNA-binding protein	NA	NA	NA	NA
SQG62528.1\|3343167_3343353_-	Uncharacterised protein	NA	NA	NA	NA
SQG62529.1\|3343511_3344093_+	merR family transcriptional regulator	NA	NA	NA	NA
SQG62530.1\|3344172_3344784_+	hydrolase	NA	NA	NA	NA
SQG62531.1\|3344928_3347037_+	putative assembly protein	NA	NA	NA	NA
SQG62532.1\|3347033_3347984_-\|transposase	transposase	NA	NA	NA	NA
SQG62533.1\|3348087_3348651_-	TetR family transcriptional regulator	NA	NA	NA	NA
SQG62534.1\|3348811_3349552_+	short-chain dehydrogenase	NA	NA	NA	NA
SQG62535.1\|3349869_3350493_+\|integrase	integrase core domain-containing protein	NA	NA	NA	NA
SQG62536.1\|3350953_3351733_+	Uncharacterised protein	NA	NA	NA	NA
SQG62537.1\|3351563_3352454_-	Uncharacterised protein	NA	NA	NA	NA
SQG62538.1\|3352466_3353417_-\|transposase	transposase	NA	NA	NA	NA
SQG62539.1\|3353403_3354444_-	Uncharacterised protein	NA	NA	NA	NA
SQG62540.1\|3354452_3355064_-	secreted protein	NA	NA	NA	NA
SQG62541.1\|3355380_3356331_+\|transposase	transposase	NA	NA	NA	NA
3355284:3356330	attR	NA	NA	NA	NA
SQG62542.1\|3356327_3357236_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG62543.1\|3357362_3358199_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	1.6e-33	33.3
SQG62544.1\|3358711_3359821_+	outer membrane porin protein	NA	NA	NA	NA
SQG62545.1\|3359882_3360833_-\|transposase	transposase	NA	NA	NA	NA
SQG62546.1\|3361025_3361808_-	short chain dehydrogenase	NA	NA	NA	NA
SQG62547.1\|3361821_3362571_-	short chain dehydrogenase	A0A0M4JSW6	Mollivirus	1.2e-11	26.4
SQG62548.1\|3362598_3363945_-	membrane transport protein	NA	NA	NA	NA
SQG62549.1\|3365015_3365921_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG62550.1\|3365938_3367138_-	aromatic-amino-acid aminotransferase	NA	NA	NA	NA
SQG62551.1\|3367210_3367903_-	metal dependent phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	4.7e-07	29.9
SQG62552.1\|3367951_3370378_-	cation-transporting ATPase	A0A218MNH6	uncultured_virus	1.2e-86	33.8
SQG62553.1\|3370422_3371373_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_29

3448546 : 3501821

Clostridium_phage(16.67%)

transposase,protease,tRNA,integrase

attL 3454341:3454370|attR 3474330:3474359

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG62624.1\|3448546_3450007_-\|protease	protease, modulator of DNA gyrase	NA	NA	NA	NA
SQG62625.1\|3450017_3450791_-	hydrolase	NA	NA	NA	NA
SQG62626.1\|3450972_3451344_+	DNA-binding protein (histone)	NA	NA	NA	NA
SQG62627.1\|3451442_3452393_-\|transposase	transposase	NA	NA	NA	NA
SQG62628.1\|3452491_3453295_-	transmembrane regulator	NA	NA	NA	NA
SQG62629.1\|3453291_3453819_-	RNA polymerase sigma factor	NA	NA	NA	NA
SQG62630.1\|3453869_3454238_-	Secreted repeat of uncharacterised function	NA	NA	NA	NA
3454341:3454370	attL	NA	NA	NA	NA
SQG62631.1\|3454438_3454921_-	nucleotide-binding protein	NA	NA	NA	NA
SQG62632.1\|3455051_3455504_+\|integrase	phage-related integrase	NA	NA	NA	NA
SQG62633.1\|3455511_3455925_-	Predicted lactoylglutathione lyase	NA	NA	NA	NA
SQG62634.1\|3456046_3456790_-	putative lipoprotein	I3PV79	Clostridium_phage	3.0e-07	30.0
SQG62635.1\|3456818_3458165_+	chromate transport protein	NA	NA	NA	NA
SQG62636.1\|3459648_3461847_-	TonB-dependent receptor	NA	NA	NA	NA
SQG62637.1\|3462009_3462387_-	lipoprotein	NA	NA	NA	NA
SQG62638.1\|3462748_3463045_+	Predicted integral membrane protein	NA	NA	NA	NA
SQG62639.1\|3463056_3463926_+	Protein of uncharacterised function (DUF692)	NA	NA	NA	NA
SQG62640.1\|3463940_3464696_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG62641.1\|3464699_3465197_+	integral membrane protein	NA	NA	NA	NA
SQG62642.1\|3465228_3466047_-	transporter	NA	NA	NA	NA
SQG62643.1\|3466031_3466652_-	transporter	A0A0M3UL24	Mycobacterium_phage	1.1e-31	42.0
SQG62644.1\|3466790_3467138_+	regulatory protein	NA	NA	NA	NA
SQG62645.1\|3467258_3467606_-	cytochrome 0 ubiquinol oxidase	NA	NA	NA	NA
SQG62646.1\|3467605_3468121_-	cytochrome O ubiquinol oxidase	NA	NA	NA	NA
SQG62647.1\|3468220_3470200_-	ubiquinol oxidase subunit I	NA	NA	NA	NA
SQG62648.1\|3470203_3471118_-	ubiquinol oxidase polypeptide II	NA	NA	NA	NA
SQG62649.1\|3471326_3471881_-	two component system response regulator	NA	NA	NA	NA
SQG62650.1\|3471877_3473089_-	two component system sensor kinase	NA	NA	NA	NA
SQG62651.1\|3473283_3474192_-	Methyltransferase domain	NA	NA	NA	NA
SQG62652.1\|3474429_3475296_-	pirin-like protein	NA	NA	NA	NA
3474330:3474359	attR	NA	NA	NA	NA
SQG62653.1\|3475464_3475938_-	Various environmental stresses-induced protein	NA	NA	NA	NA
SQG62654.1\|3476054_3476861_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG62655.1\|3476998_3478273_+	integral membrane protein	NA	NA	NA	NA
SQG62656.1\|3478269_3479391_-	putative racemase	NA	NA	NA	NA
SQG62657.1\|3479517_3480429_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG62658.1\|3480452_3481442_-	putattive exported protein	NA	NA	NA	NA
SQG62659.1\|3481466_3481934_-	acyl dehydratase	NA	NA	NA	NA
SQG62660.1\|3481947_3482409_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQG62661.1\|3482620_3483328_+	ArsR family transcriptional regulator	NA	NA	NA	NA
SQG62662.1\|3483447_3484398_+\|transposase	transposase	NA	NA	NA	NA
SQG62663.1\|3484543_3485635_-	riboflavin biosynthesis protein ribd [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase	A0A1V0SE20	Indivirus	3.1e-37	34.0
SQG62664.1\|3485873_3486437_+	isochorismatase family hydrolase	NA	NA	NA	NA
SQG62665.1\|3487008_3487419_+	AraC family transcriptional regulator	NA	NA	NA	NA
SQG62666.1\|3487431_3487914_-	transcriptional regulator NrdR	NA	NA	NA	NA
SQG62667.1\|3488071_3489319_-	serine hydroxymethyltransferase	A0A219YCZ0	Aeromonas_phage	1.1e-99	52.7
SQG62668.1\|3489538_3490195_-	putative kinase inhibitor protein	NA	NA	NA	NA
SQG62669.1\|3490230_3491460_-\|tRNA	tyrosyl-tRNA synthetase	NA	NA	NA	NA
SQG62670.1\|3491727_3492678_+\|transposase	transposase	NA	NA	NA	NA
SQG62671.1\|3492769_3494185_+	peptidase	A8ATH6	Listeria_phage	1.9e-18	46.9
SQG62672.1\|3494190_3495327_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
SQG62673.1\|3495396_3495768_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	4.7e-30	56.9
SQG62674.1\|3495855_3496602_-	integral membrane protein	NA	NA	NA	NA
SQG62675.1\|3496638_3497703_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
SQG62676.1\|3497891_3498284_-	30S ribosomal protein S9	NA	NA	NA	NA
SQG62677.1\|3498293_3498722_-	50s ribosomal protein L13	NA	NA	NA	NA
SQG62678.1\|3499017_3500115_-	solute binding protein	NA	NA	NA	NA
SQG62679.1\|3500456_3501821_-\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_30

3741830 : 3795571

Staphylococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG62891.1\|3741830_3742781_+\|transposase	transposase	NA	NA	NA	NA
SQG62892.1\|3742760_3742892_-	aldehyde dehydrogenase	NA	NA	NA	NA
SQG62893.1\|3743185_3743830_-	urease accessory protein	NA	NA	NA	NA
SQG62894.1\|3743854_3744436_-	urease accessory protein	NA	NA	NA	NA
SQG62895.1\|3744539_3745157_-	urease accessory protein	NA	NA	NA	NA
SQG62896.1\|3745159_3746875_-	urease subunit alpha	NA	NA	NA	NA
SQG62897.1\|3746871_3747180_-	urease subunit beta	NA	NA	NA	NA
SQG62898.1\|3747196_3747814_-	urease accessory protein	NA	NA	NA	NA
SQG62899.1\|3747858_3748161_-	urease subunit gamma	NA	NA	NA	NA
SQG62900.1\|3748261_3749116_-	urease accessory protein	NA	NA	NA	NA
SQG62901.1\|3749697_3749970_+	heavy metal dependent transcription regulator (partial)	NA	NA	NA	NA
SQG62902.1\|3750200_3750326_+	[2Fe-2S] ferredoxin	NA	NA	NA	NA
SQG62903.1\|3750387_3750795_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQG62904.1\|3751164_3751959_-	GntR family transcriptional regulator	NA	NA	NA	NA
SQG62905.1\|3752059_3753295_+	methylaspartate ammonia-lyase	NA	NA	NA	NA
SQG62906.1\|3753363_3754380_+	lipoprotein	NA	NA	NA	NA
SQG62907.1\|3754391_3755768_+	catabolic enzyme	NA	NA	NA	NA
SQG62908.1\|3755764_3756961_+	transporter	NA	NA	NA	NA
SQG62909.1\|3756957_3758496_-	SpoVR family protein	NA	NA	NA	NA
SQG62910.1\|3758492_3759752_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQG62911.1\|3759764_3760808_-	protein kinase	NA	NA	NA	NA
SQG62912.1\|3760859_3761690_-	protein kinase	NA	NA	NA	NA
SQG62913.1\|3761692_3762643_-\|transposase	transposase	NA	NA	NA	NA
SQG62914.1\|3762724_3763363_-	short-chain dehydrogenase	NA	NA	NA	NA
SQG62915.1\|3763409_3764504_-	acyl-CoA transferase	NA	NA	NA	NA
SQG62916.1\|3764496_3765831_-	coenzyme A ligase	NA	NA	NA	NA
SQG62917.1\|3765784_3766468_-	TetR family transcriptional regulator	NA	NA	NA	NA
SQG62918.1\|3766493_3767657_-	acyl-CoA dehyrdogenase	NA	NA	NA	NA
SQG62919.1\|3767653_3768655_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
SQG62920.1\|3768654_3769527_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
SQG62921.1\|3769523_3770273_-	branched-chain amino acid ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-09	27.8
SQG62922.1\|3770269_3771061_-	ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	1.7e-08	29.4
SQG62923.1\|3771057_3772197_-	branched-chain amino acid ABC transporter binding protein	NA	NA	NA	NA
SQG62924.1\|3772583_3773258_+	short chain dehydrogenase	NA	NA	NA	NA
SQG62925.1\|3773291_3774074_+	enoyl CoA dehydratase/isomerase	NA	NA	NA	NA
SQG62926.1\|3774077_3774467_+	Predicted nucleic-acid-binding protein containing a Zn-ribbon	NA	NA	NA	NA
SQG62927.1\|3774463_3776470_+	thiolase	NA	NA	NA	NA
SQG62928.1\|3776505_3777594_+	NAD dependent epimerase/dehydratase family	NA	NA	NA	NA
SQG62929.1\|3777590_3778541_-\|transposase	transposase	NA	NA	NA	NA
SQG62930.1\|3778894_3781873_+	adhesin	NA	NA	NA	NA
SQG62931.1\|3782039_3782555_+	desaturase	NA	NA	NA	NA
SQG62932.1\|3782567_3782816_+	desaturase	NA	NA	NA	NA
SQG62933.1\|3782799_3783678_+	fatty acid desaturase	NA	NA	NA	NA
SQG62934.1\|3783713_3784046_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA
SQG62935.1\|3785207_3785528_+	dehydrogenase	A0A1V0S9J5	Catovirus	2.4e-14	45.3
SQG62936.1\|3785626_3786577_+\|transposase	transposase	NA	NA	NA	NA
SQG62937.1\|3786573_3787041_-	ribonuclease HI	J9Q745	Salmonella_phage	5.6e-36	50.7
SQG62938.1\|3787083_3787854_-	Methyltransferase domain	NA	NA	NA	NA
SQG62939.1\|3787874_3788675_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
SQG62940.1\|3788685_3790095_+	membrane-bound lytic murein transglycosylase D	NA	NA	NA	NA
SQG62941.1\|3790189_3790975_+	enoyl-(acyl carrier protein) reductase	NA	NA	NA	NA
SQG62942.1\|3791301_3792231_+\|transposase	transposase for IS1663	NA	NA	NA	NA
SQG62943.1\|3792338_3792731_-	OsmC-like protein	NA	NA	NA	NA
SQG62944.1\|3792868_3793549_+	Inner membrane protein yebE	NA	NA	NA	NA
SQG62945.1\|3793553_3794534_-	putattive exported protein	NA	NA	NA	NA
SQG62946.1\|3794620_3795571_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_31

3801725 : 3861025

Acinetobacter_phage(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG62952.1\|3801725_3803489_+\|tRNA	glutaminyl-tRNA synthetase	A0A222YZ70	Escherichia_phage	5.0e-162	50.0
SQG62953.1\|3803600_3804479_+	cell division inhibitor	NA	NA	NA	NA
SQG62954.1\|3804591_3805407_+	septum site-determining protein	NA	NA	NA	NA
SQG62955.1\|3805410_3805662_+	cell division topological specificity factor MinE	NA	NA	NA	NA
SQG62956.1\|3805746_3806676_-\|transposase	transposase for IS1663	NA	NA	NA	NA
SQG62957.1\|3807093_3807315_-	osmotically inducible lipoprotein B	NA	NA	NA	NA
SQG62958.1\|3807457_3807940_-	isochorismatase	NA	NA	NA	NA
SQG62959.1\|3807960_3809061_-	putative ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.9e-32	28.7
SQG62960.1\|3809675_3810593_-	membrane protein	NA	NA	NA	NA
SQG62961.1\|3810705_3811221_+	Uncharacterised protein	NA	NA	NA	NA
SQG62962.1\|3811090_3812299_-	binding-protein-dependent permease	NA	NA	NA	NA
SQG62963.1\|3812378_3813950_-	binding-protein-dependent transport protein	NA	NA	NA	NA
SQG62964.1\|3814067_3815003_-	glycosyl transferase family protein	NA	NA	NA	NA
SQG62965.1\|3815191_3816136_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	8.4e-07	23.2
SQG62966.1\|3816204_3816375_-	Uncharacterised protein	NA	NA	NA	NA
SQG62967.1\|3816703_3822421_+	excinuclease ABC subunit	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-195	39.5
SQG62968.1\|3822426_3823554_+	chorismate-binding enzyme	S4VT78	Pandoravirus	3.8e-38	37.8
SQG62969.1\|3823609_3824236_+	Probable branched-chain-amino-acid aminotransferase	NA	NA	NA	NA
SQG62970.1\|3824594_3825524_+\|transposase	transposase for IS1663	NA	NA	NA	NA
SQG62971.1\|3825619_3826330_-	oxidoreductase	NA	NA	NA	NA
SQG62972.1\|3826326_3827316_-	putattive exported protein	NA	NA	NA	NA
SQG62973.1\|3827447_3829043_+	acyl-CoA synthetase	NA	NA	NA	NA
SQG62974.1\|3829045_3829783_+	transcriptional regulator	NA	NA	NA	NA
SQG62975.1\|3829938_3830811_-	adenylyltransferase	NA	NA	NA	NA
SQG62976.1\|3831079_3832300_+	inner membrane efflux protein	NA	NA	NA	NA
SQG62977.1\|3832296_3832956_+	multidrug efflux-associated protein	NA	NA	NA	NA
SQG62978.1\|3833027_3833660_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
SQG62979.1\|3833689_3834208_+	monooxygenase component	NA	NA	NA	NA
SQG62980.1\|3834218_3835328_+	oxidase	NA	NA	NA	NA
SQG62981.1\|3835374_3836229_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
SQG62982.1\|3836230_3837133_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQG62983.1\|3837242_3838376_+	oxidoreductase	NA	NA	NA	NA
SQG62984.1\|3838355_3839306_-\|transposase	transposase	NA	NA	NA	NA
SQG62985.1\|3839404_3840538_-	lipoprotein	NA	NA	NA	NA
SQG62986.1\|3840574_3840823_-	Uncharacterised protein	NA	NA	NA	NA
SQG62987.1\|3841062_3842052_+\|transposase	transposase	NA	NA	NA	NA
SQG62988.1\|3842048_3842207_+	Uncharacterised protein	NA	NA	NA	NA
SQG62989.1\|3842227_3843016_-	indole-3-glycerol phosphate synthase	A0A0P0IR83	Acinetobacter_phage	5.1e-66	53.0
SQG62990.1\|3843012_3844044_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	7.4e-73	42.7
SQG62991.1\|3844062_3844626_-	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.1e-65	62.1
SQG62992.1\|3844681_3846202_-	anthranilate synthase component I	S4VT78	Pandoravirus	9.0e-43	32.1
SQG62993.1\|3846465_3847170_-	phosphoglycolate phosphatase	NA	NA	NA	NA
SQG62994.1\|3847177_3847906_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
SQG62995.1\|3848020_3848395_+	ApaG protein	NA	NA	NA	NA
SQG62996.1\|3848437_3849727_+	membrane-bound transglycosylase	NA	NA	NA	NA
SQG62997.1\|3849723_3850893_+	monooxygenase	NA	NA	NA	NA
SQG62998.1\|3850919_3851729_+	thiol:disulfide interchange protein (periplasmic)	NA	NA	NA	NA
SQG62999.1\|3851788_3852724_+	2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	6.4e-15	27.7
SQG63000.1\|3852736_3853687_-\|transposase	transposase	NA	NA	NA	NA
SQG63001.1\|3853785_3854748_-\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	4.6e-93	64.5
SQG63002.1\|3854779_3855139_-	dihydroneopterin aldolase	NA	NA	NA	NA
SQG63003.1\|3855263_3856166_+	oxidoreductase	G3MA85	Bacillus_virus	1.9e-08	24.0
SQG63004.1\|3856167_3857934_-	signaling protein	NA	NA	NA	NA
SQG63005.1\|3857974_3858751_+	enoyl-CoA hydratase	NA	NA	NA	NA
SQG63006.1\|3859047_3860115_+	lipoprotein	NA	NA	NA	NA
SQG63007.1\|3860074_3861025_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_32

3875963 : 3919697

Planktothrix_phage(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG63022.1\|3875963_3876914_+\|transposase	transposase	NA	NA	NA	NA
SQG63023.1\|3877042_3878176_-	peptidase	NA	NA	NA	NA
SQG63024.1\|3878219_3879125_-	poly(aspartic acid) Hydrolase	NA	NA	NA	NA
SQG63025.1\|3879127_3880828_-	oligopeptide transport ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-15	32.7
SQG63026.1\|3880824_3881745_-	binding-protein-dependent transport permease	NA	NA	NA	NA
SQG63027.1\|3881752_3882730_-	binding-protein-dependent transport permease	NA	NA	NA	NA
SQG63028.1\|3882788_3883748_-	succinylglutamate desuccinylase	NA	NA	NA	NA
SQG63029.1\|3883871_3884792_-	binding-protein-dependent transport protein	NA	NA	NA	NA
SQG63030.1\|3884936_3885500_-	binding-protein-dependent transport protein	NA	NA	NA	NA
SQG63031.1\|3885797_3886034_-	Uncharacterised protein	NA	NA	NA	NA
SQG63032.1\|3886160_3887024_-	Nicotinamide nucleotide repair protein	NA	NA	NA	NA
SQG63033.1\|3887112_3887934_+	enoyl-CoA hydratase	NA	NA	NA	NA
SQG63034.1\|3888013_3888751_-	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA
SQG63035.1\|3888747_3889719_-	2-nitropropane dioxygenase	NA	NA	NA	NA
SQG63036.1\|3889892_3890516_+	TetR family transcriptional regulator	NA	NA	NA	NA
SQG63037.1\|3890560_3891709_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
SQG63038.1\|3891692_3892448_-	Uncharacterised protein	NA	NA	NA	NA
SQG63039.1\|3892554_3893046_+	acyl-CoA transferase	NA	NA	NA	NA
SQG63040.1\|3893129_3893951_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
SQG63041.1\|3894032_3894983_+\|transposase	transposase	NA	NA	NA	NA
SQG63042.1\|3895323_3896274_+\|transposase	IS1002 transposase	NA	NA	NA	NA
SQG63043.1\|3896372_3897323_+\|transposase	transposase	NA	NA	NA	NA
SQG63044.1\|3897619_3898117_+	putative blue copper protein	NA	NA	NA	NA
SQG63045.1\|3898159_3899935_+	copper resitance protein	NA	NA	NA	NA
SQG63046.1\|3899942_3900809_+	copper resistance protein	NA	NA	NA	NA
SQG63047.1\|3900815_3901541_-	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA
SQG63048.1\|3902115_3902883_+	Uncharacterised protein	NA	NA	NA	NA
SQG63049.1\|3902719_3903490_-	IclR family transcriptional regulator	NA	NA	NA	NA
SQG63050.1\|3903803_3904394_+	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily	NA	NA	NA	NA
SQG63051.1\|3904427_3905756_-	amidase	NA	NA	NA	NA
SQG63052.1\|3905830_3906976_-	binding-protein-dependent transport protein	NA	NA	NA	NA
SQG63053.1\|3907087_3908086_+\|transposase	transposase	NA	NA	NA	NA
SQG63054.1\|3908051_3908483_+	carbon monoxide dehydrogenase subunit G	NA	NA	NA	NA
SQG63055.1\|3908617_3909526_+	transport transmembrane protein	NA	NA	NA	NA
SQG63056.1\|3909534_3909984_+	transporter	NA	NA	NA	NA
SQG63057.1\|3909999_3910884_+	membrane protein	NA	NA	NA	NA
SQG63058.1\|3910880_3912086_-	phospholipase	NA	NA	NA	NA
SQG63059.1\|3912082_3912943_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
SQG63060.1\|3913055_3914846_-\|tRNA	aspartyl-tRNA synthetase	A0A1V0SAC0	Catovirus	6.5e-08	25.5
SQG63061.1\|3914886_3915537_-	membrane protein	A0A2I7S9X1	Vibrio_phage	8.6e-11	28.4
SQG63062.1\|3915552_3915861_-	putative regulatory protein, FmdB family	NA	NA	NA	NA
SQG63063.1\|3916026_3917313_-	membrane protein	NA	NA	NA	NA
SQG63064.1\|3917439_3918699_-	dehydrogenase	A0A2I2L3D3	Orpheovirus	6.1e-13	27.6
SQG63065.1\|3918746_3919697_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_33

4065110 : 4112577

Streptococcus_phage(10.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG63202.1\|4065110_4066061_+\|transposase	transposase	NA	NA	NA	NA
SQG63203.1\|4066160_4067111_+\|transposase	transposase	NA	NA	NA	NA
SQG63204.1\|4067107_4067743_-	transporter	NA	NA	NA	NA
SQG63205.1\|4067872_4068772_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG63206.1\|4068867_4069359_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG63207.1\|4069405_4070371_-	lipoprotein	NA	NA	NA	NA
SQG63208.1\|4070528_4070897_-	Predicted enzyme with a TIM-barrel fold	NA	NA	NA	NA
SQG63209.1\|4071504_4072746_+	aminotransferase	A0A1X9I5H2	Streptococcus_phage	1.9e-14	24.9
SQG63210.1\|4072859_4073876_+	amino acid-binding periplasmic protein	A0A1B1IT51	uncultured_Mediterranean_phage	3.5e-75	43.8
SQG63211.1\|4073910_4074387_-	membrane protein	NA	NA	NA	NA
SQG63212.1\|4074529_4075438_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
SQG63213.1\|4075551_4076664_-	Smf protein	S6BFL3	Thermus_phage	1.9e-21	35.0
SQG63214.1\|4076764_4077250_-	leucine-responsive regulatory protein	NA	NA	NA	NA
SQG63215.1\|4077386_4078637_+	kynureninase	NA	NA	NA	NA
SQG63216.1\|4078738_4079251_+	polypeptide deformylase	E3SLL2	Synechococcus_phage	8.5e-22	43.3
SQG63217.1\|4079349_4080300_+\|transposase	transposase	NA	NA	NA	NA
SQG63218.1\|4080365_4081304_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.4e-09	35.7
SQG63219.1\|4081326_4081953_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
SQG63220.1\|4081949_4082606_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
SQG63221.1\|4082602_4083205_-	Uncharacterised protein	NA	NA	NA	NA
SQG63222.1\|4083211_4083799_-	lysine decarboxylase	A0A2I2L3F0	Orpheovirus	1.1e-07	23.3
SQG63223.1\|4084006_4084549_+	bacterioferritin	NA	NA	NA	NA
SQG63224.1\|4084619_4085939_-	ribosomal protein S12 methylthiotransferase	NA	NA	NA	NA
SQG63225.1\|4086045_4086321_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
SQG63226.1\|4086557_4087778_+	FAD dependent oxidoreductase	NA	NA	NA	NA
SQG63227.1\|4087932_4088928_+	putattive exported protein	NA	NA	NA	NA
SQG63228.1\|4089012_4089687_+	transcriptional regulator	NA	NA	NA	NA
SQG63229.1\|4089683_4090634_-\|transposase	transposase	NA	NA	NA	NA
SQG63230.1\|4090795_4092037_+	ornithine aminotransferase	A0A1V0SKB7	Klosneuvirus	4.0e-25	25.2
SQG63231.1\|4092033_4092978_+	arginase	A0A0N9R043	Chrysochromulina_ericina_virus	9.5e-27	33.3
SQG63232.1\|4093096_4094047_+\|transposase	transposase	NA	NA	NA	NA
SQG63233.1\|4094006_4094936_-	lipoprotein	NA	NA	NA	NA
SQG63234.1\|4094989_4095325_-	carboxymuconolactone decarboxylase	NA	NA	NA	NA
SQG63235.1\|4095369_4096134_-	enoyl-CoA hydratase/isomerase	NA	NA	NA	NA
SQG63236.1\|4096157_4096898_-	transcriptional regulator	NA	NA	NA	NA
SQG63237.1\|4096905_4098480_-	substrate-CoA ligase	A0A2K9L3I8	Tupanvirus	2.0e-13	22.6
SQG63238.1\|4098493_4099471_-	lipoprotein	NA	NA	NA	NA
SQG63239.1\|4099743_4100325_-	ureidoglycolate hydrolase	NA	NA	NA	NA
SQG63240.1\|4100376_4107279_-	autotransporter	NA	NA	NA	NA
SQG63241.1\|4107725_4107857_-	entericidin A anti-toxin	NA	NA	NA	NA
SQG63242.1\|4107888_4107978_-	Uncharacterised protein	NA	NA	NA	NA
SQG63243.1\|4108122_4109241_-	transcriptional regulator	NA	NA	NA	NA
SQG63244.1\|4109333_4109993_+	haloacid dehalogenase	NA	NA	NA	NA
SQG63245.1\|4110020_4111166_+	metal-activated pyridoxal enzyme	NA	NA	NA	NA
SQG63246.1\|4111306_4111642_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQG63247.1\|4111716_4112577_-\|protease	Modulator of FtsH protease HflC	A0A2C9D0H9	Yersinia_phage	1.7e-51	53.6

DBSCAN-SWA_34

4117312 : 4123661

Burkholderia_phage(16.67%)

integrase

attL 4121233:4121247|attR 4126107:4126121

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG63255.1\|4117312_4117780_+	Uncharacterised protein	Q3HQX1	Burkholderia_phage	2.1e-43	71.3
SQG63256.1\|4117820_4117946_+	Uncharacterised protein	NA	NA	NA	NA
SQG63257.1\|4118013_4118391_+	phage-related putative membrane protein	NA	NA	NA	NA
SQG63258.1\|4118387_4118570_+	phage-related membrane protein	NA	NA	NA	NA
SQG63259.1\|4118573_4119560_+	DNA recombination protein	H9C0R8	Aeromonas_phage	2.0e-67	57.3
SQG63260.1\|4119556_4120204_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	2.0e-31	41.4
SQG63261.1\|4120261_4120789_+	Uncharacterised protein	NA	NA	NA	NA
SQG63262.1\|4120825_4122010_+	Uncharacterised protein	A0A291L9X3	Bordetella_phage	1.5e-24	37.8
4121233:4121247	attL	NA	NA	NA	NA
SQG63263.1\|4121999_4122362_+	Uncharacterised protein	A0A0H5ARN8	Pseudomonas_phage	1.8e-13	47.9
SQG63264.1\|4122354_4122474_+	phage-related membrane protein	NA	NA	NA	NA
SQG63265.1\|4122474_4122675_+	Predicted transcriptional regulator	NA	NA	NA	NA
SQG63266.1\|4122671_4123661_-\|integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	4.4e-75	44.4
4126107:4126121	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483398

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection