CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483406	Stenotrophomonas maltophilia strain NCTC10498 genome assembly, chromosome: 1	7 crisprs	csa3,WYL,DEDDh,cas3,Cas9_archaeal,DinG,PD-DExK	0	2	4	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LS483406_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483406_1

513716-513817

Orphan

Consensus_repeat	Method
GGTAGGTGCCGACCGTTGGTCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483406_1

>merge|LS483406|1|513716-513817|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCAGACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCTGGTGGGTGCCGACCGTTGGTCGGCA

>LS483406|1|1|513716-513817|CRISPRCasFinder
GGTAGGTGCCGACCGTTGGTCGGCA	GACCCCAATGCCCCGGTGGGTGCCAACCTTGGTTGGCACTCTTTACTGCCCT
GGTGGGTGCCGACCGTTGGTCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
LS483406.1\|SQG65886.1\|518969_519899_+\|LysR-family-transcriptional-regulator-clustered-with-PA0057	unknown	unknown	gnl\|CDD\|176114
LS483406.1\|SQG65872.1\|505100_506405_+\|D-amino-acid-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|234819
LS483406.1\|SQG65888.1\|520752_521409_+\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
LS483406.1\|SQG65876.1\|510477_510768_+\|Protein-of-uncharacterised-function-(DUF3247)	unknown	unknown	gnl\|CDD\|371627
LS483406.1\|SQG65884.1\|517149_518061_-\|metallo-beta-lactamase-superfamily-protein-PA0057	unknown	unknown	gnl\|CDD\|293825
LS483406.1\|SQG65890.1\|523832_524411_+\|alpha-ribazole-5'-phosphate-phosphatase	unknown	unknown	gnl\|CDD\|366010
LS483406.1\|SQG65871.1\|504471_504951_-\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
LS483406.1\|SQG65880.1\|513029_513713_+\|hydrolase	unknown	unknown	gnl\|CDD\|223710
LS483406.1\|SQG65874.1\|507637_508201_-\|transmembrane-anchor-protein	unknown	unknown	gnl\|CDD\|378666
LS483406.1\|SQG65882.1\|515036_515552_-\|3-hydroxydecanoyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|179953
LS483406.1\|SQG65881.1\|513828_515037_-\|3-oxoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|181184
LS483406.1\|SQG65883.1\|515742_516813_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
LS483406.1\|SQG65885.1\|518222_518861_-\|Rrf2-linked-NADH-flavin-reductase	unknown	unknown	gnl\|CDD\|225462
LS483406.1\|SQG65879.1\|512331_513033_+\|ribosomal-small-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|211327
LS483406.1\|SQG65873.1\|506383_507451_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
LS483406.1\|SQG65877.1\|510850_511114_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483406.1\|SQG65875.1\|508445_510434_+\|PAS/PAC-sensor-hybrid-histidine-kinase	unknown	unknown	gnl\|CDD\|236842
LS483406.1\|SQG65878.1\|511270_512335_+\|methyltransferase-small	unknown	unknown	gnl\|CDD\|225370
LS483406.1\|SQG65889.1\|521509_523351_-\|Outer-membrane-vitamin-B12-receptor-BtuB	unknown	unknown	gnl\|CDD\|273802
LS483406.1\|SQG65887.1\|519895_520687_+\|methyltransferase	unknown	unknown	gnl\|CDD\|369777

Protein	Function_ID	Function_description	E-value
LS483406.1\|SQG65886.1\|518969_519899_+\|LysR-family-transcriptional-regulator-clustered-with-PA0057	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.48333e-85
LS483406.1\|SQG65872.1\|505100_506405_+\|D-amino-acid-dehydrogenase-small-subunit	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
LS483406.1\|SQG65888.1\|520752_521409_+\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.08042e-84
LS483406.1\|SQG65876.1\|510477_510768_+\|Protein-of-uncharacterised-function-(DUF3247)	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	9.01894e-24
LS483406.1\|SQG65885.1\|518222_518861_-\|Rrf2-linked-NADH-flavin-reductase	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.07738e-67
LS483406.1\|SQG65890.1\|523832_524411_+\|alpha-ribazole-5'-phosphate-phosphatase	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	8.42842e-35
LS483406.1\|SQG65871.1\|504471_504951_-\|AsnC-family-transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.38136e-70
LS483406.1\|SQG65880.1\|513029_513713_+\|hydrolase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	8.38787e-59
LS483406.1\|SQG65874.1\|507637_508201_-\|transmembrane-anchor-protein	gnl\|CDD\|378666	pfam11454, DUF3016, Protein of unknown function (DUF3016). This is a bacterial family of uncharacterized proteins.	3.70054e-65
LS483406.1\|SQG65882.1\|515036_515552_-\|3-hydroxydecanoyl-ACP-dehydratase	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	3.90362e-120
LS483406.1\|SQG65881.1\|513828_515037_-\|3-oxoacyl-ACP-synthase	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
LS483406.1\|SQG65884.1\|517149_518061_-\|metallo-beta-lactamase-superfamily-protein-PA0057	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.54897e-98
LS483406.1\|SQG65879.1\|512331_513033_+\|ribosomal-small-subunit-pseudouridine-synthase-A	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	4.64966e-75
LS483406.1\|SQG65873.1\|506383_507451_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
LS483406.1\|SQG65883.1\|515742_516813_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
LS483406.1\|SQG65875.1\|508445_510434_+\|PAS/PAC-sensor-hybrid-histidine-kinase	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	6.21345e-63
LS483406.1\|SQG65878.1\|511270_512335_+\|methyltransferase-small	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.56654e-66
LS483406.1\|SQG65889.1\|521509_523351_-\|Outer-membrane-vitamin-B12-receptor-BtuB	gnl\|CDD\|273802	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor. This model represents the TonB-dependent outer membrane receptor found in gamma proteobacteria responsible for translocating the cobalt-containing vitamin B12 (cobalamin). [Transport and binding proteins, Other, Transport and binding proteins, Porins].	0
LS483406.1\|SQG65887.1\|519895_520687_+\|methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	4.12959e-17

>LS483406.1|SQG65880.1|513029_513713_+|hydrolase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSQAADEFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIEAVAARCHDLYEARTQTGLPLRPGILELLQLLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>LS483406.1|SQG65879.1|512331_513033_+|ribosomal-small-subunit-pseudouridine-synthase-A
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHEAIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGGLLHRIISPKSKLPKVYEVELSDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDARRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>LS483406.1|SQG65878.1|511270_512335_+|methyltransferase-small
MASSDDAPLQTLFLPFSQGALRWPEGPVAFLRARDGWPLREVAGNREVHCEQSFAPFAQPLQQAAGWTVSGQLDDVAGKGRYPLVLVLPPRQREEARALFARALALVADGGRIVACQSNNEGARSGEGDLKQLTGLGGSLTKNHCRVYWTAPMQGQHDADLAKRWSALDAVRSIVGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRPLPLRFLWQDVTAGIEPGYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVIAERDGFKLVEAVKGKGK
>LS483406.1|SQG65877.1|510850_511114_-|Uncharacterised-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>LS483406.1|SQG65876.1|510477_510768_+|Protein-of-uncharacterised-function-(DUF3247)
MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPRV
>LS483406.1|SQG65875.1|508445_510434_+|PAS/PAC-sensor-hybrid-histidine-kinase
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLRTLLGEAIGAQELVAEGKALDVNLQLPEQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQADGTHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVAAASEGHGHGATFTVRLPQHLPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAATLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVAAVRKVQVPRADSALH
>LS483406.1|SQG65874.1|507637_508201_-|transmembrane-anchor-protein
MKRALVIALLAGALVVSGANAAARNVTGTDAPRALQANGPVSVKWEDPASFTEIRQSTNRFEAERGDWVQQLARYLQTTAAKPLQPGQTLDVTLVDIKRAGDYEPWHGPRARDIRVMRDIYPPRITLQYTLKDADGRIVSEGDARLSDSGYLQGSGLLTNSDPLRYEKRLIDDWVKRQLASQATAAR
>LS483406.1|SQG65873.1|506383_507451_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEAVAAFDSPRPLTVWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFARATDGLEGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLLDNTALTERLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGALIGRVSMDMLTVDLTSHPQAGVGSVVELWGSAPTLSELAPRCGVSAYQLPCAVKRVAKVYV
>LS483406.1|SQG65872.1|505100_506405_+|D-amino-acid-dehydrogenase-small-subunit
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEVDGDRITGVRIDGKLETADRFVVALGSYSPALVASLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLSLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQQENRTCVLPAR
>LS483406.1|SQG65871.1|504471_504951_-|AsnC-family-transcriptional-regulator
MATRTRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREGVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>LS483406.1|SQG65881.1|513828_515037_-|3-oxoacyl-ACP-synthase
MRRVVITGMGITSCLGNDLDTVSAALREGRSGITALADHAEAGLRSQVGGRVDLDLEALIDRKQKRFMSDAAAFAYLAMRDAIADAGLSAEQVSSLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVESFPILRESREQKLDTVMSNSFGFGGTNAALVFGRV
>LS483406.1|SQG65882.1|515036_515552_-|3-hydroxydecanoyl-ACP-dehydratase
MTRLHAFNREQLLASARGELFGTAAGRLPNDPMLMFDRITDIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPEAKLVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>LS483406.1|SQG65883.1|515742_516813_+|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVSEPKSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALALRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEH
>LS483406.1|SQG65884.1|517149_518061_-|metallo-beta-lactamase-superfamily-protein-PA0057
MRTAALLLPLALAASFTSAPLLAAPATAAPAAATKSQLHLQTFHPGPQAMFSVSSVLIEGRRDAILVNAQFGASDARKLVELIRASGKQLTTIYISHGDPDYYFGLATLQDAFPQARIVATAQTVAHIQQTQAGKLAYWGPKMGADVPSRIVVPQVLDGDALQLEGQRLPLIGLDGPTPDRTVLWVPSLRAIVGGIPVVAGEHVWMADTQTPKSHADWLQTLQRLQALKPKVVVPGHYAPGAALDASALRFTADYIRAFDAEAAKAKDSAALVKAMQARYPKLAGVASLELSAKVAKGEMQWP
>LS483406.1|SQG65885.1|518222_518861_-|Rrf2-linked-NADH-flavin-reductase
MKIALVGSTGNIGRQIARHALANGHELTVIVRSAQDLPAELAGAHPVIASLDDQDALVAAIAGHDVLASAYGPRPGDDIGRVGEVAAQLAAAARKAGVPRLVVVGGAGSLEVAPGVQLVDTPNFPEAYKPYALAHREAFNRLQAVDDLDWTFFSPAAEIGPGEERGQYRVQPKAFLADASGHSRISYADYGAAFVAELEAQQYPKQIITAAY
>LS483406.1|SQG65886.1|518969_519899_+|LysR-family-transcriptional-regulator-clustered-with-PA0057
MDRLTAMTVFVEVAERGSLTAAAEVLDMSRAMVSRYLGEVEAWLGARLLHRTTRRVSLTGPGEAALARFRQMLAIGEELQGELASDDPEPHGTLRVTASVSFGQSHLARAVAAFVARHPAARIELLLVDRMVNLVEERVDLAVRIARQIDPSLIARRLATCRSVLCATPSYLQARGTPTAPEHLAAHNCLTHHYVGKSLWQLHRDGRSLSVAVGGNISANEASLLLEAVRAGAGIAMLPTYQVAPLLRSGELIELLPEFSLDELGIHAVYASRRQQPAIMRRFLDFLAECFASPAFQDLDWRPPGKENT
>LS483406.1|SQG65887.1|519895_520687_+|methyltransferase
MNHGQALIDHNRAAWDRQASEVREWSRPVESSTVAAAREGRWQVHLTPRALPLDWLGDVRGRRILCLASGGGQQAPVLAAAGAEVTVFDLSDGQLEQDRQVAARDGLQLRTVQGDMRDLHAFANDSFDVVFHPISNLYVPDVRPVWTECRRVLARDGMLMASFYNPVLFVGARDPQLDAQGLIRPQYAIPYSDLEDLPPAEREAKLARGDALTFGHSLTELIGGQLDAGFVIDRFMEDWQPQPRFLIDRYLPTFLATRARRIG
>LS483406.1|SQG65888.1|520752_521409_+|phosphoglycolate-phosphatase
MSYPYPLVVFDLDGTLVDSAADIAEALNRTLEDIGLARVPEATVLGWIGDGVRRLVEQAVQAAGREVDLAEVMPVFMVHYRECLLRSPRLFDGVGEALAQLRARNVPLAICTNKPEALVPPLLQHLGIGDAFALVLGGDSLPQRKPSGEPLRHIAAHFGLPVESCLMVGDSLTDYRAAEEASMPIALVRYGYPRGLDLATAHAVAVIDDLRELPGLRG
>LS483406.1|SQG65889.1|521509_523351_-|Outer-membrane-vitamin-B12-receptor-BtuB
MKLQSRMLSLAVLAALPALAQAANDTTALDQILVTATRTPIALQDSIAPAQVIDRAQIESSQATSLQELLRGRAGINLANAGGLGKQSSLFLRGTNSGHTVVLVDGVRINSADLGLAMYQDLPLAQIERVEIVRGPQSSLYGADAIGGVIQIFTRRNQGDFAPHFQLGGGSNGLREASGGIGGGTERGWFGADIAYQHSDGIDACRGSATLFAGCFADEPDRDGYRNLSKSLRGGYTFNEQWNVEGSALRADGRNHYDGYYNYSETRQQVLAGKVRYTPSERLAFTANVGRSDNESDNFGDFGARGSAQTHRDSASLQGDFGVAEGQLLSAGVDWSEDNLDGNSAGYLVDSRRNTGVFVQYQGRFGRHQLQASARNDDNQQFGNHATGSVGWAMELGHGLRLNASYGTAFKAPTFSDLYDPWSGVPTLKPEKSKSANLGVSQQGQGWHWGLDVYETRIDDLITYDAATFKMQQVEKARIRGAELTGGVLLAGFDINAQLSYTDPRNRTGGSTQFDNWLPRRAQQTARLDIDRRFGDFRAGLTVQGAGKRYDDAANTVKVGGYGTLDLRAEYALTPSWSLLARAANVFDRRYETVAWFNQPGREYQLGVRYQPK
>LS483406.1|SQG65890.1|523832_524411_+|alpha-ribazole-5'-phosphate-phosphatase
MILDLVRHAGNGRDEFLDGRSDPPQLAGLPQELVEAYAGQRWERVISSPRLRALHTAMALATPRGLDVEADEEWEELDFGDWDGRSLFDLPEDALAAFHADPHAFPPPNGESWGHFERRIARALDRLLDDDDPVPTLVVSHGGPLRMVLSQVCGLPMSLCWALRIDHGTRLRVWLERGEIGLVGELLELQQP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483406_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483406_2

2238090-2238197

Orphan

Consensus_repeat	Method
CATCCACGCATGGCGTGGATCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483406_2

>merge|LS483406|2|2238090-2238197|CRISPRCasFinder
CATCCACGCATGGCGTGGATCTACCGCAACCCGCTTTGGTGGGTGCCGACCGTTGGTCGGCACGGATGCCTGTGCCTCTCGATCATCCACGCATGGGGTGGATCTACC

>LS483406|2|2|2238090-2238197|CRISPRCasFinder
CATCCACGCATGGCGTGGATCTACC	GCAACCCGCTTTGGTGGGTGCCGACCGTTGGTCGGCACGGATGCCTGTGCCTCTCGAT
CATCCACGCATGGGGTGGATCTACC

Protein	Signature genes	Signature genes Name	Protein_function
LS483406.1\|SQG67463.1\|2230746_2232519_-\|C-di-GMP-phosphodiesterase-A	unknown	unknown	gnl\|CDD\|238923
LS483406.1\|SQG67474.1\|2243844_2244315_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483406.1\|SQG67476.1\|2244891_2245704_-\|streptomycin-resistance-protein,-streptomycin-3''-phosphotransferase	unknown	unknown	gnl\|CDD\|226100
LS483406.1\|SQG67473.1\|2243381_2243843_-\|nudix-like-NDP-and-NTP-phosphohydrolase-YmfB	unknown	unknown	gnl\|CDD\|239647
LS483406.1\|SQG67464.1\|2232523_2234626_-\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
LS483406.1\|SQG67475.1\|2244427_2244754_+\|ATP-dependent-Clp-protease-adapter-protein-clpS	unknown	unknown	gnl\|CDD\|178809
LS483406.1\|SQG67468.1\|2239037_2239952_+\|ISStmaD4-Transposase	unknown	unknown	gnl\|CDD\|226077
LS483406.1\|SQG67469.1\|2239963_2240272_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483406.1\|SQG67457.1\|2225939_2226335_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183628
LS483406.1\|SQG67465.1\|2234757_2237517_+\|Sensory-box/GGDEF-family-protein	unknown	unknown	gnl\|CDD\|236645
LS483406.1\|SQG67472.1\|2242242_2243385_-\|tRNA-specific-2-thiouridylase-mnmA	unknown	unknown	gnl\|CDD\|234664
LS483406.1\|SQG67471.1\|2241631_2242246_-\|High-frequency-lysogenization-protein-hflD	unknown	unknown	gnl\|CDD\|234690
LS483406.1\|SQG67458.1\|2226472_2227417_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151
LS483406.1\|SQG67460.1\|2228431_2228737_+\|Negative-regulator-of-flagellin-synthesis-FlgM	unknown	unknown	gnl\|CDD\|274802
LS483406.1\|SQG67470.1\|2240277_2241468_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
LS483406.1\|SQG67466.1\|2237635_2238070_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483406.1\|SQG67477.1\|2245842_2248128_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
LS483406.1\|SQG67461.1\|2228733_2229072_+\|FlgN-family-protein	unknown	unknown	unknown
LS483406.1\|SQG67459.1\|2227699_2228356_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|183625
LS483406.1\|SQG67462.1\|2229163_2230381_+\|Histidine-kinase	unknown	unknown	gnl\|CDD\|340419

Protein	Function_ID	Function_description	E-value
LS483406.1\|SQG67463.1\|2230746_2232519_-\|C-di-GMP-phosphodiesterase-A	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	5.55568e-97
LS483406.1\|SQG67475.1\|2244427_2244754_+\|ATP-dependent-Clp-protease-adapter-protein-clpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.26539e-44
LS483406.1\|SQG67473.1\|2243381_2243843_-\|nudix-like-NDP-and-NTP-phosphohydrolase-YmfB	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.42301e-69
LS483406.1\|SQG67464.1\|2232523_2234626_-\|signal-transduction-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.41319e-43
LS483406.1\|SQG67468.1\|2239037_2239952_+\|ISStmaD4-Transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.09325e-23
LS483406.1\|SQG67476.1\|2244891_2245704_-\|streptomycin-resistance-protein,-streptomycin-3''-phosphotransferase	gnl\|CDD\|226100	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].	7.20574e-74
LS483406.1\|SQG67457.1\|2225939_2226335_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183628	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.	8.61259e-79
LS483406.1\|SQG67465.1\|2234757_2237517_+\|Sensory-box/GGDEF-family-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.00014e-104
LS483406.1\|SQG67472.1\|2242242_2243385_-\|tRNA-specific-2-thiouridylase-mnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
LS483406.1\|SQG67471.1\|2241631_2242246_-\|High-frequency-lysogenization-protein-hflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	2.48163e-86
LS483406.1\|SQG67458.1\|2226472_2227417_-\|chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.16931e-37
LS483406.1\|SQG67460.1\|2228431_2228737_+\|Negative-regulator-of-flagellin-synthesis-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	1.67856e-14
LS483406.1\|SQG67470.1\|2240277_2241468_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	7.72638e-31
LS483406.1\|SQG67477.1\|2245842_2248128_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
LS483406.1\|SQG67459.1\|2227699_2228356_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|183625	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA.	5.41447e-107
LS483406.1\|SQG67462.1\|2229163_2230381_+\|Histidine-kinase	gnl\|CDD\|340419	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS. This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.	1.6216e-52

>LS483406.1|SQG67466.1|2237635_2238070_+|Uncharacterised-protein
MRMVEMFVVVALCTWGGLSELQARLPEARFITADGSFASAIASLVINFYLVFYLFCRRNVHGDHSKCVFGSLLILSASVNYLSFELLSDRLQDISRWLPPTAWQLNFALLISTVRNVIAFGFGAIGAGIVSGVLSRHGKGVSDA
>LS483406.1|SQG67465.1|2234757_2237517_+|Sensory-box/GGDEF-family-protein
MDQGIIASLLQHPLASALVIVDRTGRPLAANPAAREHGLPATVAAYAPMLEDLRLMAADGGIVACTLPGGPHGHYDGHLRAVHDGAGNLLAFTLSIPEPVPLGGGGRWELALDSAGHSLWDWDIPSDRVVRTPAVGDETATEMLARVHGEDIAQVRAALEEHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQLEGLLQEQQLHLSEAQRIASMGSWSFDPNSGHFWWSPELRSMLALEQGAVPGQRRWLKQLHPRSRGALRAAWRRLWRDGRAANLELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQVQNITEQHQTDALIRWRTELLNRVSALGRIGGCEIEVKTRHMQWTEECYRIHGLRKEPITLDQALALYTEDSRNAFEAALARIANGGLPEQLDLCFYRQSGLRVWVQVLIELDRRDGLPPRFVVLFRDITREREANERIELLAHYDLLTGLPNRVLLGEQTAEAIEEARDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRLHQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVGIAMLGDAQTDFGSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIEREEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNEACRQATAWDRAGLRFDRIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESALIRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGTAEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQPQPVSLRTDASGEVMLVR
>LS483406.1|SQG67464.1|2232523_2234626_-|signal-transduction-histidine-kinase
MPAEPTGTALVPDPRMAQALSRDRRRVVLSYLVMALAWMIASDSAVQALVPDPQQAAMWQSVKGSFFALASAGLLYLLLRPLAEHVLHTHARQQASELRLRQMFEGNPGPILVYDLDTLAILDANPAACTTFGWERDELLEQTIDALWPPGQDQALQTKLEAIREAPEELCILRAQLQLRDGSLRQMELRSNAISYDGHNARLLIAIDRTAEDLAQLRRDQALARVEEAHELARIGAWELDPSTGMGRYSNQVYRLLGRRPPEARRWHRFDELLVPADPATATQTEQLLADLCSGDPVQVDVLLPLLSMDGRALMVHLRAASGVDESGRSRVLGTLQDVTEREQSRRLLREREEQFRELVRVLPDGVVILSDEHVLYTNAWAASLFGYGSHTLLGEPLSALVAAGDLARVRGQLRAGQPHLGPGHSSVVAMQRADGRSFHAGLAVGEVRYGGRDCKLLIVRDLSDSERTRSALETSNRELQAMAGRLFSLQEDERRAISRDLHDDIGQAITAIKLSAHAAQDEHDPQRRAEDLAQIVSLADTTVAKLRDISTLLRPPQLDALGLEAALSWQARVLFRSSQVELLAEIEPLPHRPDNSIEQACFRIAQESLTNVLRHARASQVHLQLRDIGKRSLHLQIRDDGEGFDPDGPRGLGLIVMRERAQSVGGHVRIESAHGEGTLIDVHLPYQAASMAAVESPEY
>LS483406.1|SQG67463.1|2230746_2232519_-|C-di-GMP-phosphodiesterase-A
MWNPNQPPVSIDDAPDRLGAGNPELQAMVAEAASGGTALMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKLWRHGSDEFLIAVPRNADVPLPEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASNASRLLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPLVSARDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALKQARLWRDQGFDDFTIAVNVSTLQLLRPNFFAEVMGLIQAAGVPAQMLTLEINESALTNNVNFVHETLANLRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMGHQLGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRYLRPEAFAETRPDRTLLLLDDEENVLRSLVRLFRRDGYRILAAGNVRDAFDLLAINDVQVILSDQRMSDMSGTEFLGRVKMLYPDTIRLVLSGYTDLNTVTDAINRGAIYRFLTKPWNDDELRKHIHQAFRTYEEQRRSNAGPAPAESGDGGEDRPLR
>LS483406.1|SQG67462.1|2229163_2230381_+|Histidine-kinase
MSAANALVTAPLPPQPVLQALLERLREGLLLFTEDGQVALANPAAQNLLAGGEDGALPPQRLRELLPPDALEQARQHGHWNGSLPLGEGVVIAHLYHHGPVGQGHFLALFRHIEGQEDYERELQQRHAELRQAYLRLNGTQEKLLQSEKMASIGQLAAGVAHEINNPIGYVHSNLGSLQEYLRSLFTVIEAYERALRAPDPKALIPEIDDIRDRLDIDFISRDLPQLMAESREGIERVTRIVRDLKDFSYSGRDESWKLVDLHAGLESTINIIWNELKYKVTLVREFGQLPLVECLPSELNQVYMNLLLNAGHAIAERGTITVRTGVDGDQVWVEFEDTGGGISPELRQRIFDPFFTTKPVGSGTGLGLSISYSIINKHHGRIDLDSTPGVGSRFRVVLPVKQPR
>LS483406.1|SQG67461.1|2228733_2229072_+|FlgN-family-protein
MTAAMSEPLQRLAQALDVERQALVEHDVHALIRATGAKLEALRALEGAPPVGQGEQLQELAERNRANGVLLSRRRREVNWALRQLGRTEDASAYDAKGQSHTVTARRPLAVA
>LS483406.1|SQG67460.1|2228431_2228737_+|Negative-regulator-of-flagellin-synthesis-FlgM
MSQKIDGNLQVPQALRSVTTPANKPGVSTDAAARPVEAADSLRLTGEATNLQAIERELTTAPAIDAQRVAAVRESLQNGTYKINPDAIASRMLDLDQQLHG
>LS483406.1|SQG67459.1|2227699_2228356_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MRRVTSLLAIALALASPWAAAADWQPVASIRTAALSTLPAGSEGEAQVADALRLPKCGGALQVQPTANTTVEVSCPDAGGWRLFVPVKVRRNQTVLVLNRGIGTGETLTAADITTAQRDAARIAGAVLADPNAAIGRIARRPLQAGALLSNNDLVVQRLIRRGDNVALVSRRGSVEVRIAGRAMGDAGENERVSVENLSSRRIVQGTVDAAGDVIVAR
>LS483406.1|SQG67458.1|2226472_2227417_-|chemotaxis-protein-CheV
MSHDLLNRIDQRTRLAGHNRLALLLFRLGGRQLFGVNVFKVQEVLRRPELFQVPGLPSQFSGVADVRGRSVPVLDLGLAIGHPEREPEADTSPGYLVVTEFNRSIQGFLVSGVERIVNIAVEDIHPPPELGAESSYLTAVTRFQGELIQVIDVESVLADIAQVRGEAVLDPAMAMPSDGPQLQVLVVDDSRVARQQIRSVLDQLGVGATLLSDGKQALDHLLQIHASGENPAERYAMVISDIEMPAMDGYTLTTEIRRHPGLAGLYVLLHTSLSGVFNNAMVERVGANAFVAKYSPHELADFVLDRLRKVALAA
>LS483406.1|SQG67457.1|2225939_2226335_-|flagellar-basal-body-rod-protein-FlgB
MRNLITDYLGVHAQAMPLREQRMKLIASNLGNADTPGYKAQDLDFDAALRHAQGQDANGLMATTHEQHYEISSGLNPFQIAREGVQPSLDGNTVDPDAERAAYGRAALEYRASLSFVESKVRSMLTAITGQ
>LS483406.1|SQG67468.1|2239037_2239952_+|ISStmaD4-Transposase
MFGIGIDVSKATLDVAVHGEQFRQFSNDKRGFVRLIRWLKTWPIKQVVLEASGGYERAALDVLHAAGLPMVRINPARARRFAQGTGRAAKTDRLDATVLAQMAHLLPLTRYVPPAPWQQRLAEFAQCRRQLVQMRVSEMQRLRRLVDPDLIAMKQRHIAQLSDDLKQLDKAIAEQLEGQPGWKNIGALKGVGPILISTLACELPELGSLGSKAIASLVGLAPMNRESGTWQGQRRISGGRAVVREALYMAALTAIRYEPRLRAFYAGLKAKGKASKVALVAVMRKMLVILNARKRDAEVALGCP
>LS483406.1|SQG67469.1|2239963_2240272_-|Uncharacterised-protein
MSAALAGSPQGPGSSGAFACDPPLDASCTRTMTLIRALPSLTDTERPRNASVREQLQQLEEVAREEIRELQQLADARPAPPRADEALLGLAWDLGLDGEALK
>LS483406.1|SQG67470.1|2240277_2241468_-|methyl-accepting-chemotaxis-protein
MYSRIFIRLAAPLALTLLLPFAIGFEWPAALRWAILTTMTLSWLGFAWWTTRAQAHRSPEHARVLREQDQLLTELRNFVGNEIEGSRGEVERARDLIRQAVSSLGGSFDAMNRKSRQQSQALSRIVDRAGDEGNAGLDVARFAQHASHRMEQLVEALEQVSGQSSTTVQHIDQMAQHLDGIFALLEDVKSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLSERSTTFNEQIRKLAHSSKDAIAKVRETVSHMASRDMDRSREARQEAAAMLDNVAQINASLGDGMREVSECARSIDGSVAEAVRALQFEDIATQALGGVHTHLDRLTAINREAVALQELLHRNGGVFDEEIATALQRTGSRLRELRSEWERPPHKPVAQQSMGAGTVELF
>LS483406.1|SQG67471.1|2241631_2242246_-|High-frequency-lysogenization-protein-hflD
MSFTVDDRVLALAGIAQALQQVRRIADTGHSDAAAVRTAVDSVFRVDASSPQEVFGDRHALKSGLRLLHNYFRSQGQDPILPKLALSVLQLERRFVQDGATVNKVASGIERAQRQATELGDSGHPDVLANLGGLYADTISHLKPRVMVQGNPHYLGQAGVVAEIRALLLAAVRAAVLWRQLGGSYWDFLFSRKAMIEAVDRQLA
>LS483406.1|SQG67472.1|2242242_2243385_-|tRNA-specific-2-thiouridylase-mnmA
MSTPRVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCRAEDDRRDAVAVCGLLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPARPGQILDPADGSVIAEHPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIAGSPPARRFECTAQTRYRQPDEPCTVQVLDDGSVLVTFARPQRAVTPGQSLVLYDGDVCLGGAVIAATDAPLEQRLRTTPSPFEVIAA
>LS483406.1|SQG67473.1|2243381_2243843_-|nudix-like-NDP-and-NTP-phosphohydrolase-YmfB
MNATPDPRWAPHATVATVVVDGGRVLLVEETIDGRQVLNQPAGHLEPGESLAEAALRETREETGWTVQLIHFIGCYQWTAGDGTAFLRFCYAARPVSHDPAQPLDTGIDRALWLTPAELQAAGERQRSPLVWQVVADYLGGQRHPLSLVREVA
>LS483406.1|SQG67474.1|2243844_2244315_-|Uncharacterised-protein
MKRTLLPALLIALAATGSAAAADADKAVARHLDKLGYTYEVDEDGDYRMVFDVEGDRTQMVYVRSSVEDFGTHNIREIWSPAYNAKTKQFPVAVANRLLEDSQDAKMGGWVKQDTTAMFVVKIDADATADQLSDAIDAAIRTADAMELELTKKDEF
>LS483406.1|SQG67475.1|2244427_2244754_+|ATP-dependent-Clp-protease-adapter-protein-clpS
MPHESSPDSQHEHGVAVEAARPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEKA
>LS483406.1|SQG67476.1|2244891_2245704_-|streptomycin-resistance-protein,-streptomycin-3''-phosphotransferase
MSEPYLSRWRLRRDGPAIRTPHARLWPVLTAADEPAMLKISSETEEQNSHRLLRWWNGDGAARLLAHEGPAILIERARGDSLRQRSIKGDDDACTAILCQVLQRLHRPRSAPPAKLVCLRTWFADLLQPRAVLPPLLEQCRSLAEGLLRDEQEIRPLHGDLHHDNVLDFGPRGWLAIDPKRLLGDRAFDYTTMFSNPDLCGPGIHVATRPERFAIRLEQVCALAELERTRLLRWIAASTALSAVWFRDDGDPADIDETVARMALEALAER
>LS483406.1|SQG67477.1|2245842_2248128_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADADRLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGDEGEQSSSSPEGESRMEGGEGEPKGDALTEFASNLNDQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIIEGSVPDVLADAVIYSLDLGALVAGTKYRGDFEKRLKSVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYELHHGVTYSDEALQAAVDLSVKHIGDRLLPDKAIDVIDEAGARQRLLPEEQRKELIDVEEVEAIVAKMARIPAKQVSATDKDVLQHLERNLKMVIFGQDPAIETLSSAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRSFTPEFRNRLDAVVQFQALGFEHILRVVDKFLIELEMLLQDKHVSLSATPTARDWLAHHGFDPLMGARPMARVIQDKIKRPLADELLFGKLVNGGKVSIDVRDDELVVETQAEPERLLPVTVE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483406_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483406_3

3731911-3732023

Orphan

Consensus_repeat	Method
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483406_3

>merge|LS483406|3|3731911-3732023|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGGCGGTAGATCCGCGCCGTGCGTGGATGGGAAAGCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGTTGCGG

>LS483406|3|3|3731911-3732023|CRISPRCasFinder
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	CGGTAGATCCGCGCCGTGCGTGGATGGGAAA
GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGTTGCGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483406.1\|SQG68782.1\|3725049_3725757_-\|giant-cable-pilus-chaperone-protein	unknown	unknown	gnl\|CDD\|237939
LS483406.1\|SQG68789.1\|3734067_3735006_-\|inosine-uridine-preferring-nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239115
LS483406.1\|SQG68790.1\|3735246_3735768_+\|ISPsy9-like-transposase	unknown	unknown	gnl\|CDD\|225511
LS483406.1\|SQG68796.1\|3742240_3742906_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
LS483406.1\|SQG68781.1\|3720613_3724981_-\|autotransporter-hemagglutinin-like-protein	unknown	unknown	gnl\|CDD\|240612
LS483406.1\|SQG68783.1\|3725773_3726907_-\|minor-pilin-and-initiator-protein	unknown	unknown	gnl\|CDD\|284778
LS483406.1\|SQG68788.1\|3733736_3733979_-\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
LS483406.1\|SQG68778.1\|3716345_3718769_+\|multimodular-transpeptidase-transglycosylase	unknown	unknown	gnl\|CDD\|227342
LS483406.1\|SQG68792.1\|3736908_3739020_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
LS483406.1\|SQG68785.1\|3729680_3730190_-\|giant-cable-pilus-fimbrial-subunit	unknown	unknown	gnl\|CDD\|367947
LS483406.1\|SQG68794.1\|3739562_3741725_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|223394
LS483406.1\|SQG68791.1\|3735764_3736598_+\|ISPsy9-like-transposase-integrase	unknown	unknown	gnl\|CDD\|222853
LS483406.1\|SQG68787.1\|3732162_3733440_-\|Citrate-synthase-(si)	unknown	unknown	gnl\|CDD\|180164
LS483406.1\|SQG68786.1\|3730708_3731797_-\|transmembrane-protein	unknown	unknown	gnl\|CDD\|236090
LS483406.1\|SQG68777.1\|3715067_3716126_-\|type-4-fimbrial-biogenesis-protein-PilM	unknown	unknown	gnl\|CDD\|378558
LS483406.1\|SQG68795.1\|3741830_3742130_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
LS483406.1\|SQG68779.1\|3718979_3719624_+\|Predicted-nucleotidyltransferase	unknown	unknown	unknown
LS483406.1\|SQG68784.1\|3726903_3729630_-\|outer-membrane-usher	unknown	unknown	gnl\|CDD\|185210
LS483406.1\|SQG68780.1\|3719800_3720544_-\|transmembrane-protein	unknown	unknown	unknown
LS483406.1\|SQG68793.1\|3739027_3739414_-\|endoribonuclease-L-PSP	unknown	unknown	gnl\|CDD\|129116

Protein	Function_ID	Function_description	E-value
LS483406.1\|SQG68782.1\|3725049_3725757_-\|giant-cable-pilus-chaperone-protein	gnl\|CDD\|237939	PRK15308, PRK15308, fimbrial protein TcfA.	1.13197e-49
LS483406.1\|SQG68789.1\|3734067_3735006_-\|inosine-uridine-preferring-nucleoside-hydrolase	gnl\|CDD\|239115	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR). .	1.64895e-119
LS483406.1\|SQG68790.1\|3735246_3735768_+\|ISPsy9-like-transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.27601e-05
LS483406.1\|SQG68796.1\|3742240_3742906_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	5.54639e-121
LS483406.1\|SQG68781.1\|3720613_3724981_-\|autotransporter-hemagglutinin-like-protein	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	3.35033e-17
LS483406.1\|SQG68783.1\|3725773_3726907_-\|minor-pilin-and-initiator-protein	gnl\|CDD\|284778	pfam07434, CblD, CblD like pilus biogenesis initiator. This family consists of several minor pilin proteins including CblD from Burkholderia cepacia which is known to CblD be the initiator of pilus biogenesis. The family also contains a variety of Enterobacterial minor pilin proteins.	6.15733e-46
LS483406.1\|SQG68788.1\|3733736_3733979_-\|50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	3.97798e-51
LS483406.1\|SQG68778.1\|3716345_3718769_+\|multimodular-transpeptidase-transglycosylase	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
LS483406.1\|SQG68792.1\|3736908_3739020_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
LS483406.1\|SQG68785.1\|3729680_3730190_-\|giant-cable-pilus-fimbrial-subunit	gnl\|CDD\|367947	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit. Fimbriae, also known as pili, form filaments radiating from the surface of the bacterium to a length of 0.5-1.5 micrometres. They enable the cell to colonise host epithelia. This family constitutes the major subunits of CS1 like pili, including CS2 and CFA1 from Escherichia coli, and also the Cable type II pilin major subunit from Burkholderia cepacia. The major subunit of CS1 pili is called CooA. Periplasmic CooA is mostly complexed with the assembly protein CooB. In addition, a small pool of CooA multimers, and CooA-CooD complexes exists, but the functional significance is unknown. A member of this family has also been identified in Salmonella typhi and Salmonella enterica.	2.2064e-20
LS483406.1\|SQG68791.1\|3735764_3736598_+\|ISPsy9-like-transposase-integrase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.59144e-58
LS483406.1\|SQG68787.1\|3732162_3733440_-\|Citrate-synthase-(si)	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
LS483406.1\|SQG68786.1\|3730708_3731797_-\|transmembrane-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	5.57878e-06
LS483406.1\|SQG68777.1\|3715067_3716126_-\|type-4-fimbrial-biogenesis-protein-PilM	gnl\|CDD\|378558	pfam11104, PilM_2, Type IV pilus assembly protein PilM;. The type IV pilus assembly protein PilM is required for competency and pilus biogenesis. It binds to PilN and ATP.	8.46083e-170
LS483406.1\|SQG68795.1\|3741830_3742130_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.39874e-21
LS483406.1\|SQG68784.1\|3726903_3729630_-\|outer-membrane-usher	gnl\|CDD\|185210	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional.	0
LS483406.1\|SQG68794.1\|3739562_3741725_-\|GTP-pyrophosphokinase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
LS483406.1\|SQG68793.1\|3739027_3739414_-\|endoribonuclease-L-PSP	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.07399e-58

>LS483406.1|SQG68786.1|3730708_3731797_-|transmembrane-protein
MSTRFDPPERGPLGPDVAAVVTAPIVAPPSESAVSWGAIFAGATAAAALSLILLILGVGLGLSSVSPWSFEGVSKETFGWSSIIWLTFTALAASGLGGYLAGRLRTKWTQIHGDETYFRDTAHGFVSWAVATLLTAGLLTSAIGGVLGAGAKVAGAAAGVAASTAGVAAAGAGSTAAAAPEGDLNYWVDSLFRNATDAGPAAAGAPPAPGAPDAASGVAATDPAPPPPAASVGPRDVRVGLPPRPMPGNGPMGDRREVRAEVNRIIVNSLQGDGLDPADTQYLAQLIARETGMSPAEAQARVTDVQTRMRAALEKARNTAKQAADDARKATAYAALWLFITLLIGAFFASLSATWGGRRRDL
>LS483406.1|SQG68785.1|3729680_3730190_-|giant-cable-pilus-fimbrial-subunit
MHAIIKKAALAAALATASLSAHAVETKISVYADVDPTLALLRDDGTPLPDMVTLTHDPLRGLIPNTQRVRIHSNDDKADIEARIDGSFFLANETGTVTVPMTISLNNRALGAAAIEYKAADLFNGAGSTPGASISMPLTIAQTTPAPILTKGAYSGLVNVVLNQKAATP
>LS483406.1|SQG68784.1|3726903_3729630_-|outer-membrane-usher
MTLHAPAVTRLAVALALALSTPLAAARGVPPGFEDLVEGQTEQLDIQLFGRSAGLSPVRVTLEHVQLEDPARVLQSLDLPAEAQAALLPALSQPLPRNSHLACRFGGASAGCGYIDPPEAPDEVRALYDEGEGAVRLFVARQWIPGKPAAERFHTVTANAENAFLHQQTLNLSGGRDYQSLSARGVGTLGLFDRGHLSAEWYYNQQRYRSHSDDDFQFDNVYYRHDLGPAHYLQAGRMDRRNLSSPQGGTFSFSMLPLDRFQGARLGTTQAYVDTDAAVQASPLTVLLARDARVDVFDGERLLQTFYLQAGINQIDTRNFPFGNYLVRMRIYEDGVLVRTEEAPFDKGGDWTNSQWQWFVQGGHRSERRSDAFDGERIAMAGVRVPLGRDAAMTAGAATFGGHRYGELRLDLRRVMATQEVRATFSGMRGSDGSNGQQHQLSYRRTASWNLYQQRMRGKACQFEAEARDQLGCTNALSGSMSLPLAGGNVYVGYTRRQTWRTGWYRPEFEQDPSFGLEPLLPPGPLEPRREPLLSRTWQASFSRSHRWQDFSVSTRVGVWRQNSTDSVRGSTERDRGIYVNLSLSRRHRSAAGDGQRRYAVDVRQPQHQRPAIDYSIGQSLRQELDTQYRELSGELRANNNERYSASLGGQLQNGIGHTSASVARYQQRGRSETGYSGAHNSGFALGRRGFYWSGANGADAGLAVQVADTDDADLRGVAAELQVGGLRRQRLQIGERRLLPLPAYQSQRAEVQDASTLDSIAAIRVTGVGGARPMFLTPGKLMRMPVPIEVTYTFIGHARDLAGVPLGGARILNAPVPGTSANGGFVADFPRRETTLYLLQDDRLLHCPLQVRERRQVVLLVGAVHCEPLAVAQLPAEIRQQARVTRLLQERALIAATPRTAAAGGTP
>LS483406.1|SQG68783.1|3725773_3726907_-|minor-pilin-and-initiator-protein
MNRRWMFVLMLVCAPVLVMPRAWAQWPPETHPADQSRDIVMSWDRSAVPGDVELWAPRTVLGFSHDLALKYGQIHVVCGSSSDSELGRCPTDGVIDQDLGRTQIVLRAVEQRTGLRAEIGAVGFMQRIMSGRVCTSDFWNSSERNLYEALWFQCPPNDPLGTGVQLTLPETEIARLVAGHWKATMRLNIKADPAAAPVATATFNFDFTVTDYDAISIYFPTFDTVAPLVNLDLRYDPIQKVVGGRKQLDMCLYDGLGSQSEYLDVTVRDSGPRPPAGSDFSLWHRDGGSDASQRLDYRVHLDYGGHRLAMKHNVKQQLRGIDSAQLRLVMLPGISQPVYCVPTPLTLETPPTPIASQRPGLYEGELTVVLDVPTAKP
>LS483406.1|SQG68782.1|3725049_3725757_-|giant-cable-pilus-chaperone-protein
MKKLLFCLLPVSALLALPAHANLSIHPMRAAVDAKRGTQIRVYSQSTIPQYVQTRLRRIVNPATPAEEEQEMEASDAAIAITPGKFALSGGGNRLIRVIPLQQVQKETAYRLYFEGVRGPDDAPLEDGEGAQANIGVSLVWGALVNVTPDDGVVDLRLQDNTLHNTGTLRVGIIGAEECTAAGTCTPHPVSHSLYPDAALTLPFQLQPGNSLQLRYRLTRDGYREHVRTIAPTTT
>LS483406.1|SQG68781.1|3720613_3724981_-|autotransporter-hemagglutinin-like-protein
MNRIYRRIWNHAKGCWEVASELTRPCGRKSSRAAGAGGLLMVALMLAGGEVHAKTRYYIGCDPFNLGNGEFVSCSPITGSYEDSTFIGYALSSGRNSLGYGAGVNMKGDNTTAFGIGARINGQNSAAFGFKASTYAVDSVAVGYNARTSADGGHNVAVGANAYAAYIGATALGNKAEARAQNAIALGSGSSSRGVDALALGANSSTSAAGSMAVGANSSATRTNAIALGLSSVAQQENAVALGASTFSNGVDGVALGSRARVDTGAGTGGVAIGGGARAGSLGYTGAIAIGGESRALTDGVALGYAASASAQGAVALGVRSVATEANTVSVGSASVRRRIVNVADGRVTASSTDAVTGKQLHAMNERVDGMIKQDSAGGIVRIANSNTGSEVSMRNAVLATRKVSGVSDGALTTTSTDAVNGRQLNTTNGNVTKAQTAADVAKADASKALAQVTTVTGLIGQTSSTSSVRLGEKNSGISLDVRNSANANRKVTGVADATLSTSSTEAVTGRQLNTTNENVAKAQTAAGEAKSDASNALTQVVTLGGLVGQVSATGNVRLGEKNSGTVLDVRNSANANRKLTGVADGTLSTSSAEAVTGRQLNTTNENVAKAQAAADTAKVEAGKALAQAVTLGGLVGQVSATGNVRLGEKNSGTVLDVRNSANMNRRVSGLEDARLSERSDDAVSGRQLYMTNGRVSALEDLNQYMSIGIDEFSARAEAGMLGVAIGDSAKTGADGGVAVGAFSTALGVNSVAVGRGSWVEKDAAGGFAMGAGAQVRARNGISIGESAMVLNGADGSLALGTGSVATEFGTASFGSAGKGRRLVNVDRGTEGHNAVVVSQLRESLYALGAGAGMDASGDVVAPTYAVQGGAQHTVEDALMALDGAVITAGRRAGKVEDQLSSIFQDSPSARADGMNQIALSGANGMVLSNLADGRVAPGSRDAVTGSQLYAAEQKISQNRNDLEAMRKEKEMGQEAMRGLDASVIDYGGARLTGVADGSVSADSHDVVTGRQLFGVSERVSNIESQGRFLKISTDELSKDAFAGFLGVAIGDSAYTGSDGGTALGAYATALGVNSVALGRGSAVSIDAPNGFAVGAGSQVHSARGIAIGLGAMVDSEATGSLALGAGSAATEVGVASFGNPAAQRRLINIANGTANHNAATVGQLRGALSALGGEVDANGNIVGPSFAVQGQSQSTLNGALEALDGAVVSNRSRVNQVESQLRSVFQDTPSVRADGLNQLTLAGTHGMVISNVANGLIAAGSRDAVNGGQLHSMQQQLNGRMDGLEQRIDAPQPQPQAMAVASVPEPEAPVPQAEGGQQVASVGEGEKPAPQPKTKEDTPKPQVDTAELEKMLARANEYTDGAISNFERRLDKMDKRFNRMAAMSSAQTAMAMNTAGLATYNRLGAGVGYSEGESAMAVGYQRVLNEKGSATFSLNGAFTNSGERSMGVGVGIGW
>LS483406.1|SQG68780.1|3719800_3720544_-|transmembrane-protein
MYRWVSGIVSYRTFYIWRARFRYYTRNLDLWTLMSGLCIAGLLLVLWYLWQMLGVPPPRVHPQAAALRIEGVTSEAIHRIVLVRHAGRTPGAPFTTPEEVRASTLRTMRVRQVMDSEVVWRLKADMLADIADYITATGGCVPYDCRRIRARLEDVRRAGVENAQINTALLTILEVSLDQMPSLEAVEHERVKSGWSDGFNDIYDQIWLLRGLQVMHAQMMREYPQRAPVPWLPRLLSDPLRDTRFVW
>LS483406.1|SQG68779.1|3718979_3719624_+|Predicted-nucleotidyltransferase
MHRARQHAASQTRERRHRLAHEAARLMAEGGIRDYHQAKLKAASRLGIHDDASLPRNTEIEDALREYQRLFAGPQHGSELQRRREAAMRALEFLHGFSPRLAGPVLEGTADANSPVQLHLHSDDPEAVHRFLDEHGIPAESRTRRLRMDRERCLDVPVWVFSAEELTFDLAVLPYDALRQAPLSPVDEKPMRRASVAQLRQVLAEAEISAYIGG
>LS483406.1|SQG68778.1|3716345_3718769_+|multimodular-transpeptidase-transglycosylase
MTRLRRWLRWIFLIVLVLALIGAAAVGGLYYAVSSKLPDVQTLRDVEMQEPMYVYAADGKLMAVFGETRRTPITMKDVPERLKQAFLATEDARFYEHGGVDYMGIGRAVWLLATTNDKRVPGGSTITQQVARQFFLSSEYSYTRKLAEILLARKIESELSKDEIFELYLNKSFFGNRAYGVAAAAEFYYGKKLNELDLDEMASLAGIPKFPSSGNPISNPERARQRRDNYVLQRMADLKFVSQAEADAAKAVPMHATAHEPPVQVDAPYVAELVRQEMIARFGGDVVNKGYHVTTTIDSTLQTAANQSVRDGLLLYDHRHGWHGVEKQVQVGAGEDAAALAEHLRGMYGQAGLLPAIVASTGADGSATVVLANRSEIVLPAGAAKWTNKTPGKLVQRGDIVRVRAGAKEGEWLLDQIPRGQSALVSLDAHNGALKALVGGFSFSGNKFNRATQARRQPGSSFKPFIYAAAFDKGYNPASIVLDAPVVFRDRRGKTWAPQNDGGGFRGPMRLREALVQSRNLVSVRLLDGMGVDYARKYISEFGFAESELPPNLSMSLGTASLTPLSVARGYAVFANGGSRVDTWLIDQVNDRDGNLVFKENPALACRDCAGSSDQPVNQVVDGFNFGAPAPKVDPAAAAKAEAKTETPAAPANPDARTAPRAIDARTAYQLVSMMRDVVQRGTGVQAKVLGREDVGGKTGSTNDHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWIDYMRTALKDTPIAQNEPPSGMVQATLNGATEWVKVEDMDRLTDYDLNLNTPQADAAAFDIF
>LS483406.1|SQG68777.1|3715067_3716126_-|type-4-fimbrial-biogenesis-protein-PilM
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAAVAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELGGLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEEAGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLAQMTLGPKVNAHALAQDAPALMIATGLALRSFD
>LS483406.1|SQG68787.1|3732162_3733440_-|Citrate-synthase-(si)
MSDLDQVTLNAGDKSVVLPVIKPTLGNDCVDIAKLTKETGFFTYDSGFTATASCKSAITYIDGDKGVLLYRGYPIEQLSEKSSYVEVAYLLINGERPSAEQLKAFTDELTAEANVDESINTLIGSFAKDAHPMAILAAAIAQLSAIYHDSLDLSDAEQRRQAAVRLIAKVPTLSALIYRHGKGLPANKPDTSLDYVSRFLKQTFESADGQYDLNPDVVKALDLLFILHADHEQNASTSTVRLVGSTGANPYASVAAGVTALWGPAHGGANEAVLKMLEEIGSADNVESAVVKAKDKTSGFRLMGFGHRVYKNFDPRAKVIGEMTSKVLKQLGVQDPLLDVAVKLEQAALQDEYFVARKLYPNVDFYSGIIYKALQIPTEMFTVMFALGRTSGWVSHWLEQQVDPEMKIGRPRQVYTGSDVRDYQG
>LS483406.1|SQG68788.1|3733736_3733979_-|50S-ribosomal-protein-L31
MKADIHPNYRDVVFHDVTSDFKILTRSTMATKETIQWEDGNEYPLVKVEISSASHPFYTGKHKVIDTSGRIDKFQKRYAR
>LS483406.1|SQG68789.1|3734067_3735006_-|inosine-uridine-preferring-nucleoside-hydrolase
MTHKIPLLIDTDPGVDDALALLMAFADERHDVVALTIAAGNVGLQYTVRNALKLCDIVGRTDVPVFAGSPDPLLHPSVDAAHVHGRDGYGDVDLPPPSRQAEAEHAALAILRLSHEHAGELMLVMLGPLTNLALALKLDPTLPERIKRIVVMGGAVTCHGNITPAAEFNIAFDPEAAHVVFTSFKHLLVSDWEATVAHGLPLQDAEKWLQADSDRARFYELISRKTRGLSEDSKGGRWYTADAVAMAWALNPEGQLRVESRPLNVELNGTFSRGATIVDWNRQTGQPDNCDLLMAYDQQRFEALVRQALGAD
>LS483406.1|SQG68790.1|3735246_3735768_+|ISPsy9-like-transposase
MNRYDARFKLQVAKEACKTSTSVKAIARRHGLEFSTVRRWVATYRLHGWRGFHRQARFYDLPFKLAVLEKMSQDGMSGREATTYFQIGDAGAVGRWRRLYAQGGAQALAPPPPLPRKPMKKTRSSKPPEEMSRDELLKEVAYLRAETDYLKKLDALIREEQAAQDAKRKPSKD
>LS483406.1|SQG68791.1|3735764_3736598_+|ISPsy9-like-transposase-integrase
MRQVHTLSLLLEAAELSRSTFYYQNHVLAHPDQDEAALCERIRAIYDQSQGRYGYRTVTLELANQGHRTNHKRVQRLMGEMGLKSRVRVKRYRSFKGAANVVVGNDLNRQFHAERPNQKWVTDVTEFKVQGMKLYLSPIMDLYNGEIVAYQIKRQPVFDLVGQMLEEAIKKLSPDERPMIHSDQGWQYQHENYRHMLEKHSLKQSMSRRGNCLDNAAMESFFGTLKSEFFYLNSFDSIESLEAGLVEYIQYYNQERIKLKLKGLSPVEYRERAQSAA
>LS483406.1|SQG68792.1|3736908_3739020_-|ATP-dependent-DNA-helicase-RecG
MARKAAVTPVLSPSGEASLAMLAGVGPAVAAKLQARGLATLQDLWLHLPLRYEDRTRLTRIEDLRNGVPAQVEGRVVAVERGMRYRPMLKVAVEDEGRGTLVLRFFHFRQQQVGQFAVGNRLRCFGTPKPGQLGLEIVHPSYQVLGRNDDPELGDRLDPVYPTVEGVGPMTMRKLIGQALDRLPEESALELLPSGWLDGLGLPSLRSALLTVHRPPPDADLAALAAGTHPAQRRLAMEELLAHHLSLRRQRIALQAHHAPPLAGPGKLAKALLKQLPFALTGAQARVFKQIREDLARPSPMLRLVQGDVGSGKTVVAALAAMLAVEQGKQVALAAPTELLAEQHLNNLRGWLEPLGVRIAWLAGKVTGKARAKVMEQVASGEAQVVVGTHALMQEAVVFQDLALAIVDEQHRFGVHQRLALRDKGAGGNSVPHQLVMTATPIPRTLAMSEYADLDVSAIDELPPGRTPVQTVALNNDRRPELIERIALACQEGRQVYWVCTLIEESEELDATPAQATYESLQALLPGVRVGLVHGRLKAAEKLATMVAFKAGDIDLLVATTVIEVGVDVPNASLMVIENAERLGLAQLHQLRGRVGRGSAVSRCVLLYQAPLSQMARERLQTMRETNDGFVIAEKDLELRGPGELLGTRQTGLAGFRIADLARDAGLLPGVHDLAERLLDQQPTLADRVVQRWIGTAVRYASA
>LS483406.1|SQG68793.1|3739027_3739414_-|endoribonuclease-L-PSP
MSRQIINTEKAPAAIGPYSQAVRAGNTVYFSGQIPLDPATGDIVGAGDVEAQARRAFDNLKAVAEAAGGSLDKVVRLGLYLTDLGEFAKVNAVMQDYFQAPYPARSTIEVSGLPKGANFEVDAVMVID
>LS483406.1|SQG68794.1|3739562_3741725_-|GTP-pyrophosphokinase
MNPGPTAKVAAAPAAAVPDYVLQLERAAHYLPPEQLPLLRRAWEVGASAHAGQTRKSGEPYITHPVAVAQVLAELGLDVEALIAAILHDTIEDTPLTREALAAEFGEAVAELVDGVTKLDKLKFRDRQEAAAESFRKMLLAMSRDLRVIMIKLADRLHNMRTLGAQSREARGRIARETLEIYAPIAQRLGMSLVKSELQNLGFKALYPWRHAIIEKHIRSQPVVRREAMAQVEVQLSQRLAKEGIEHRLISRIKTPWSIYNKMRDENKSFDQVMDVFGFRLVVRSVPSCYHALGSVHATFKPLDGRFRDFIAIPKANGYQSLHTVLFGPYGSPIEVQIRTEEMDLIAERGVAAHWTYKFGGDSPNSAQSRAHAWIVELIDSQRAAGSSLEFLDNVKVDLFPDEVYLFTPKGKILALPRNSTALDFAYAVHTDVGNMAVASRVDKKLVPLRTKLVSGQSVEIITARSATPKPQWLEFVVTSKARTAIRHQLKQLEHEDAVQLGHRMLDRALEAMDSSLERLPKGRLDAFLAEHRFPRLEALLAEVALGNWMPTQAAQALMAYAELRGGPHSRHHSQEKILINGSERGVVTFAGCCQPIPGDEIMGYHTAGKGIVVHRMDCPNLAELRKSPERWVPIGWDTTVSGDYDTSLVVEVENGTGVLAQLAAAIAQSHSNIERVDYLDRDFNAAVLAFNIQVRDRNHLAEVMRRLRRLSVVQSVRRQ
>LS483406.1|SQG68795.1|3741830_3742130_-|DNA-directed-RNA-polymerase-subunit-omega
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQATLDNSETEDKPTVLALREIAARKIDNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
>LS483406.1|SQG68796.1|3742240_3742906_-|guanylate-kinase
MSAPSKPSDAVARGTLYIVAAPSGAGKSSIVNATLARDPQIALSISFTSRAMRPGEVNGQHYHFVSAEKFEQMIAAGDFFEHAWVHGDWKGTARQSVEPQLAAGQDVLLEIDWQGAQQVRQLVPGTVTVFILPPSKQALQDRMRKRGQDSEAVIAQRLGAARDEMLHFNEFDYVIVNEVFDTAVDELCAIFTASRLRREAQKVRHAGLIQALLTPDPGATD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483406_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483406_4

3825289-3825397

Orphan

Consensus_repeat	Method
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483406_4

>merge|LS483406|4|3825289-3825397|CRISPRCasFinder
CAGTGCCAACCAAGGTTGGCACCTACCAGGGCAAAGACCAGCTGCTGTAGATCCACACCATGCGTGGATGCATGCGTCAGTGCCAACCAAGGTTGGCACCTACCAGGGC

>LS483406|4|4|3825289-3825397|CRISPRCasFinder
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	AAAGACCAGCTGCTGTAGATCCACACCATGCGTGGATGCATGCGT
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
LS483406.1\|SQG68877.1\|3834195_3835494_-\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
LS483406.1\|SQG68878.1\|3835554_3836472_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|181542
LS483406.1\|SQG68874.1\|3830651_3831299_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
LS483406.1\|SQG68876.1\|3832761_3833979_-\|cationic-amino-acid-transporter	unknown	unknown	gnl\|CDD\|129987
LS483406.1\|SQG68870.1\|3823464_3824238_-\|dehydrogenase	unknown	unknown	gnl\|CDD\|183716
LS483406.1\|SQG68881.1\|3839471_3839669_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226826
LS483406.1\|SQG68863.1\|3816690_3816804_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483406.1\|SQG68872.1\|3825419_3828581_-\|RND-efflux-transporter	unknown	unknown	gnl\|CDD\|223911
LS483406.1\|SQG68869.1\|3822301_3823363_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
LS483406.1\|SQG68864.1\|3816790_3817882_+\|threonine-dehydratase	unknown	unknown	gnl\|CDD\|236339
LS483406.1\|SQG68866.1\|3819475_3820255_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
LS483406.1\|SQG68873.1\|3829834_3830515_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
LS483406.1\|SQG68871.1\|3824355_3825261_+\|LysR-family-transcriptional-regulator-PA2877	unknown	unknown	gnl\|CDD\|176161
LS483406.1\|SQG68879.1\|3837028_3838360_-\|O-antigen-polymerase	unknown	unknown	gnl\|CDD\|225844
LS483406.1\|SQG68867.1\|3820315_3821734_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
LS483406.1\|SQG68868.1\|3821733_3822312_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
LS483406.1\|SQG68880.1\|3838340_3839456_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340846
LS483406.1\|SQG68875.1\|3831315_3832674_+\|type-I-secretion-outer-membrane-protein,-TolC-precursor	unknown	unknown	gnl\|CDD\|273829
LS483406.1\|SQG68865.1\|3817878_3819465_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
LS483406.1\|SQG68862.1\|3816442_3816694_+\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|226486

Protein	Function_ID	Function_description	E-value
LS483406.1\|SQG68877.1\|3834195_3835494_-\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
LS483406.1\|SQG68878.1\|3835554_3836472_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|181542	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase.	0
LS483406.1\|SQG68874.1\|3830651_3831299_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	1.35392e-64
LS483406.1\|SQG68876.1\|3832761_3833979_-\|cationic-amino-acid-transporter	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	4.60478e-08
LS483406.1\|SQG68870.1\|3823464_3824238_-\|dehydrogenase	gnl\|CDD\|183716	PRK12744, PRK12744, SDR family oxidoreductase.	2.65777e-176
LS483406.1\|SQG68881.1\|3839471_3839669_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226826	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown].	3.15077e-15
LS483406.1\|SQG68875.1\|3831315_3832674_+\|type-I-secretion-outer-membrane-protein,-TolC-precursor	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.66583e-106
LS483406.1\|SQG68872.1\|3825419_3828581_-\|RND-efflux-transporter	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
LS483406.1\|SQG68869.1\|3822301_3823363_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
LS483406.1\|SQG68864.1\|3816790_3817882_+\|threonine-dehydratase	gnl\|CDD\|236339	PRK08813, PRK08813, threonine dehydratase; Provisional.	0
LS483406.1\|SQG68866.1\|3819475_3820255_+\|SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.65828e-22
LS483406.1\|SQG68873.1\|3829834_3830515_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	7.81558e-27
LS483406.1\|SQG68871.1\|3824355_3825261_+\|LysR-family-transcriptional-regulator-PA2877	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.0032e-96
LS483406.1\|SQG68879.1\|3837028_3838360_-\|O-antigen-polymerase	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	2.3293e-19
LS483406.1\|SQG68867.1\|3820315_3821734_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
LS483406.1\|SQG68868.1\|3821733_3822312_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	9.51424e-94
LS483406.1\|SQG68880.1\|3838340_3839456_-\|glycosyltransferase	gnl\|CDD\|340846	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences. This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.	1.0882e-48
LS483406.1\|SQG68865.1\|3817878_3819465_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
LS483406.1\|SQG68862.1\|3816442_3816694_+\|acetolactate-synthase-small-subunit	gnl\|CDD\|226486	COG3978, COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown].	1.63788e-22

>LS483406.1|SQG68871.1|3824355_3825261_+|LysR-family-transcriptional-regulator-PA2877
MDRIDRFRIFTRVVECASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTHDGDVFHARCLRLIAEVEDAESLFRQDDAQPVGLLKIDVPSRIGRRIIAPALPDFFARHPQVEVDLGMTDRAVNLIEDGCDAVLRVGQLGDSSLVARTLGQLDFVNVAAPAYLREHGVPQQPADLQQHRAVNYASPTTARVEPWEWQEGAQLRTLPMPGWVRVNSAEASIACCVAGLGLLQIPRYDVQAELQSGELVEVMPQYVAQPLPVTLLQPHRQHRAQRVQVFIEWLLPVLRSGLQLQ
>LS483406.1|SQG68870.1|3823464_3824238_-|dehydrogenase
MTDHSLKGKTVLIAGGAKNLGGLIARDFASQGAKAIVIHYNSAATQADAEATVTAVQAAGSKAVALQGDLTSAAAMERLFADAVAAVGRPDIAINTVGKVLKKPLLEISEAEYDEMSAVNAKAAFFFLKEAGRHVNDGGRICTLVTSLLGAFTPFYSSYAGTKAPVEHFTRAASKEFGERGISVTAIGPGPMDTPFFYPAESADAQAYHKTAAALSAFTRTGLTDIADIVPWIRFLVTDGWWMTGQTILVNGGYTTK
>LS483406.1|SQG68869.1|3822301_3823363_+|3-isopropylmalate-dehydrogenase
MHAEIVVLPGDGIGPEVAAAAVAVLKSVATRFNHTFTFSEHDIGGIAIDRHGEPLPASTLTACQAANAVLLGAVGGPKWSDPNAKVRPEQGLLAIRKALGLYANLRPVRTHEAALHASPIKAELLQGVDFVVVRELTGGIYFGDKTRDADSASDLCRYTVAEIERVLRSAFRLARQRRGKVTSVDKANVLETSRLWRDVAARIGREEFPDVALEHQLVDSMAMHLLAKPREYDVIVTENMFGDILTDEASMLAGSLGLLPSASLGEPGAVGIYEPIHGSAPDIAGKGIANPYATIFSAAMLLRHSLGLETEAAAVEAAVHAVLDDGVFTADLAAKGQAVSTAAATDAVLAKLN
>LS483406.1|SQG68868.1|3821733_3822312_+|3-isopropylmalate-dehydratase-small-subunit
MAGFRTLTSASVVLRQTNIDTDQIIPARFLSTTERAGLGRNAFNDWRWQADGSPVADFAFNQPHNAGRSILLAGRNFGCGSSREHAPWALTDLGLRAIVSSEIADIFRGNSLKNGLLPIVLDEADVQALMQRPDDELTIDVAARELRTPDGHVYSFPLDGFSQTCLLEGVDQLGYLLGRVPEIERYESEHAR
>LS483406.1|SQG68867.1|3820315_3821734_+|3-isopropylmalate-dehydratase-large-subunit
MTSAPRTLYDKLWDAHVVVPETDSAPAVLYIDLHLIHEVTSPQAFTELRERGLSPRRPDRTKATMDHSTPTLPPAADGTLPYASAASEAQVATLARNCAEHGIELFDMASDNRGIVHVIAPEQGFTQPGMTIVCGDSHTSTHGAFGSLAFGIGTSEVGHVLATQCLLQRKAKTFAITVDGPLAPGVGAKDVVLHIIGVIGVNGGTGHVIEFRGSTIEAMDMEQRMTLCNMSIEAGARAGMVAPDQVTFDFVAATPRGPKGADFDAAVARWQQLRSDDGARFDSEVHIDAADIRPTLTWGTHPGTAIAVDAPIPAANDAAAQKGLDYMHFQAGKALAGTPVDVVFVGSCTNGRLSDMREVAQVLRGRRVADRVRMLVVPGSEIVKREAEAEGIHEIVRAAGAEWREPGCSMCIAMNGDLVAPGQLAVSTSNRNFEGRQGPGSRTLLASPMSAAWAAVNGHVADTRELFAQEVA
>LS483406.1|SQG68866.1|3819475_3820255_+|SAM-dependent-methyltransferase
MSAFDTFTPASAAGQQWNAQDYAIDAGFVPLLGGAVSRLLDPRAGERILDLGCGDGVLSTELALSGARIHGVDASPELVVAARARGVDAQVMDGHALSFDSEFDAVFSNAALHWMTTPDRVLEGVRRALRPGGRFVAEFGGHGNVATIIAAVQAARVAHGHGASTFQWYFPTADAYADRLRQHGFQVQLIECTPRPTALPTGVAGWLRVFAAPLLDDLPAEARATVREAATALLAELPRNAAGQPLADYVRLRVLARRR
>LS483406.1|SQG68865.1|3817878_3819465_+|2-isopropylmalate-synthase
MTTIERITTPRIRIFDTTLRDGEQSPGCSMSPPQKLVMARALDELGVDIIETGFPASSQSDREAMALIGRELRRPSLSLAVLSRCLQADIETSARALEAAANPRLHVFLSTSPLHREHKLRMTREQVLESVRKHVSLARSYIDDVEFSAEDATRTELDYLIEVARVAIAAGATTINLPDTVGFTTPEEIRAMFQQVIAGVADVPNAANVIFSAHCHNDLGLAVANSLAAIEGGARQVECTVNGIGERAGNCSLEEIAMVLKVRQAFYEQDSSINTPRIVGTSQLLQRLVGMPVQRNKAIVGANAFAHESGIHQHGMLRHRGTYEIMRPEDVGWEDSQMVLGRHSGRAAVEARLRALGFWLDEDELKLVFEQFKGLCEQQRVVTDADLQTLMQGGSNAQGYRLASMTISDVGSRANALVELSDPDGNRVAETAQGDGPVDALFGALSAATGVQLMLDSYHVHSVGIGADARGEANLSVRHEGVEYDGTGTSKDIIEASALAWLDVANRLLRQRQATAHNSTDVPTPATA
>LS483406.1|SQG68864.1|3816790_3817882_+|threonine-dehydratase
MPAADTSQESDVGDVSVADVLAAQARLRRFLPPTPLHHAERFGTWLKLENLQRTGSYKVRGALNALLAGRERGDTRPVICASAGNHAQGVAWAAYRLDVPAITVMPHGAPATKIAGVAHWGATVRQHGNSYDEAYAFAVELAQRHGYRFLSAFDDADVIAGQGTVGIELAAHAPDVVIVPIGGGGLASGVALALKSQGVRVVGAQVEGVDSMARAIRGDVREIAPVASLADGVRVKIPGFLTRRLCTSLLDDVVIVREAELRETLVRLALEEHIIAEGAGALALAAGRRVAGRRKCAVVSGGNIDAGVLAGLLTDIRPRPPRKPRRRRSETPRSPAKASAPPSPMPSPSHLQAATPAVEEISL
>LS483406.1|SQG68863.1|3816690_3816804_+|Uncharacterised-protein
MNTRTVATTVPVRRRLLRRPCPHAAVFRTALVAHAGR
>LS483406.1|SQG68862.1|3816442_3816694_+|acetolactate-synthase-small-subunit
MQYRLDLVLHPAEGALLRVIGMAERRGFAPRAISGAPVAADDGRWHLQLVVDGQRPAETLCRQIEKIYDCVSVQVTAVEGVSP
>LS483406.1|SQG68872.1|3825419_3828581_-|RND-efflux-transporter
MRRFNLSEWALANRPLVLFAMLAFALIGAWSYKHLGQSEDPPFTFKAMVVRTLWPGATAEQVSRQVTEPIEKALMNTGEYEFIRSYSRPGESQVIFMARDSLRSRQIPDLWYQVRKRVGDIRATLPREIVGPFFNDEFGDTYGNIYALTGKGFDYAVMRDYADRIQLELQRVPDVGKIDLVGLQDEKVWIELSNTRLATLGVSMQQVQQALADQNAVTGTSFFETATDRVQLRVTGQFNDIEAIRQFPIRAGDRTVHLGDIAEVKRGFADPASPKMRFMGEEAIGLAVAMKDGGDILKLGANLDAEFERLQKTLPAGMQLRKVSDQPQSVEESVGEFVQVLTEAVVIVLLVSFFSLGLRTGLVVGVTIPLVLAMTFFVMHYFDIGLHKISLGALVLALGLLVDDAIIAVEMMATKMEQGYDRLRAASFAWESTAFPMLTGTLITAAGFLPIATAASSTGEYTRSLFQVVTIALVVSWIAAVLFIPYLGDKMLPDLFNPQPPKPGSVSARWHAKRQQWADRYPALANLIAPPQHGHDHDPYQRPFYRSFRRFLDGCLRHRWWVIAATIALFVFSLMMFRFVPQQFFPDSTRPELMVDIELAEGASLRSTQAQAEKLEKLLSSREGIANYVSYVGTGSPRFYLPLDQQLPATNFAQFVVLAKDIKSRESTRDWLLHEVIPKFPDVQMRVTRLENGPPVGYPVQMRISGEHIEKVQAIARQVEAKVRENPHVMNVNLDWSEPSKVVRLVIDQERARALGVSSAQVSQFLSSSLAGQSVSVYREGNRQIEMLLRGPADERNQLELLSSLSMPTANGGSITLSQVATMEYGFEDGIIWHRNRLPTVTVRADISDGMQPLDVVHQILPTLDGIRAELPSGYLLETGGTVEDSARGQNSIKAGMPLFLVVVATLLMLQLRSFSRAAMVLVTAPLGIIGATLFLLLFRAPFGFVALLGTIALAGMIMRNSVILIDQIQQDIDAGHDRWHSIIDATVRRFRPIVLTALAAVLAMIPLSRSAFYGSMAISIMGGLIVGTVLTLVFLPALYAAWFRVKPDESGA
>LS483406.1|SQG68873.1|3829834_3830515_+|TetR-family-transcriptional-regulator
MSSSTSRKPSAKPAAKAAGPGRPKDLGKRAAILEAAKVLFIEQGYTGVSMDAIAAQAGVSKLTVYSHFGDKETLFSEAVQSKCIEMLPDALFVADADGPLRDQLIGIGLAFFELITSDAAISIQRMMMAPETDERLRELFWKAGPERTCEALADFLRARAERGELEITDYSLAGEQFLTLVKGEVHMHMMCGMPLSPVECDPLAHVTASIDFFLRAYAPRGAGTAE
>LS483406.1|SQG68874.1|3830651_3831299_+|protein-L-isoaspartate-O-methyltransferase
MTIDYAHARELMVEQQIRPWDVLDIKVLDVLARLPREAFVADAHRALAYADVELPIGHGQKMMKPVIEGRTLQALDLQPGDEVLEIGTGSGFLSACIGALARDVLSLEIDPELATAARARLDASGLGTNVRVEVADALSWQTERRFDVICVTGAVDVVPSQFASWLRPGGRLFVIHGRSPAMEALLVKADGSTESLFETDIDYLRGAAPAPQFHL
>LS483406.1|SQG68875.1|3831315_3832674_+|type-I-secretion-outer-membrane-protein,-TolC-precursor
MIRRSLAVALATALLPLSAHAADLLQVYEMARNGDPQLSAAESTRLVDKEGAVQARAALLPQINGQATLNRTRSEPNADINSGSFTNKRRNYTIDGSQTLFNWTQINNLRSQRELSKAADFTLESANDSLIVRTSAAYFNVLVAIESLNAAQTNEAAAKKQFDFADKRLEVGLAPITDVHEARAQYDQARANTIVAQNTLADNYQALTELTGQPVVNLRGLPADFRPEVPANRGNIDELVHQATTQNPALKAQELKVSAAEAGVQAARGGHYPTLSLGGSWGKTATWGDSTGSGSLSPDARTNSIGLTLNVPIFAGGATQSGVRQALAQRDIAQDGYEQQKRALDRNTRNAYQTLVQGISEVEARRLAVVSAQSAYDASQVGLEVGTRTVLDVIQNQRILFSAQLDYAQARYTFLQNRLLLSQSLGALDVAELQDVNRLLTQDAGNPATTTH
>LS483406.1|SQG68876.1|3832761_3833979_-|cationic-amino-acid-transporter
MDSDSSPGIDEPGYGDRLVVVALTLLLGGGVVALVGQHTAAQAGPAIVLSLLLAALGTGPLLYCLHVLNQQRPAADGLHGVVRDCWGGVPAVLLGGALLLELVVTAAGVAQSVANHLHVLLAGCGIEASNGMPGQLMAAASLLLLAVVGLLRPHRVVLVACVLLTVKVGAGLLLLVLATRHVHYAYWIPWLPPATAPYRFGIGGVLAASVPLYGVFATVGLALGFPGIGRQARARPPLLPACVLLAMVLLIVLAALQAGLVEFPALASTRPLSVALQHHPQLYWVMPLLPLAGVAGAVALILVLLMLAARVAMQLWPTAGDRSLEFRERLVPVAVVLSAALLALWAPMGSLPVLPGPATLLVMGAVCVAVLRGRAPRSRALPVLAPVAIALCLLAAVERMRVWPG
>LS483406.1|SQG68877.1|3834195_3835494_-|3-deoxy-D-manno-octulosonic-acid-transferase
MRKDPVEWILRGLYSVVLYILLPITVYHLVWRGFRVREYFRRWDERYASYPQPTGQPRVWLHAVSVGEVNAAAPLVNALRKERPDIRWVITTITPTGSERVRALWGDALDHVYLPYDVPGSVNRFLGHFQPSLALILETELWPNMLFGCRDRGIPVYILNARLSARSLRGYRLLAALIRRALRTVTCVAAQSQDDAERFVQLGAAPEQVQALGNLKFDITTPDVQGFVEQFHARVPARRPVWIAASTHDGEEQAVIDLHRRLRRQHPDLLLLWAPRHPERFPKVEALAREQGWNVATRRAKQWPEVGTDVFVIDTLGELMPFYACAQVAFVGGSLQPIGGHNLLEPAAMGTAAVTGPHLHNFSEISRRMREAGALLIGEDVQAVGELLQHLLEDPQAREDMARAGCTLISNGRGALQRTLALVGPHLPPPCR
>LS483406.1|SQG68878.1|3835554_3836472_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MSDATTAVRPSLRDPRNWPMFAAMLGAFAIARLPWMLQRALGRGVGWITWRLLGSRRRAAEVNLQLCFPEKDEAWRQRLVRDSFDALGVGVFECIRAWWGSIDSIRPQVQIEGLEHLRQMQAEGRGVLLVSGHFMTLEMCGRLLCDYVDLSGMYRKHKNPVYEWAVKFGRLRYAKAMFANEDIRATVRHLKKGGFLWYAPDQDMRGKDTVFVPFFGHTASTITATHQLARMTGCAVIPYFHRREGGKYFLKIGAPLENFPSDDVEADTTRVNQAIEEMVREAPDQYLWIHRRFKRQPGGRSDFYK
>LS483406.1|SQG68879.1|3837028_3838360_-|O-antigen-polymerase
MPTSPADPAVIVRDDRAGRWAPWWVLAYVAMWPLPGIAETVLGLGALYAAARMVTRRLQRRPHLLSTAAWALTSILFLGYWLPQAFSAFDAIDPAASWTKAAAGLRYLPFMWLVAIAVATPERRRLTFAGLALITGAWTLDALVQAVAGTSPWFWSLEHLKLAVSGHALCPADEAALADRLSGALGPCNLKFGQVLASLSPFLLLPAARRFGNTGWLLAAAALGSVLLLAGSRASWITFALVLAYSGVRQFGWKRLAALALVAVLGAGALTASVPQLRERFARTAMALDGGERGVDEALSGRARIWEAAACMIEEHPINGVGARGFRDAYPACVAEDGPAVWGNAPALHAHQIVLEILAETGVIGLLLWLAAVAQAWRAWRYAPAMARERARPAMLALAVTVFPLNTHLAFYSAFWGGLTVLLAALFAGSLLARDADDTPTAV
>LS483406.1|SQG68880.1|3838340_3839456_-|glycosyltransferase
MRRLTVVQLLPALHSGGVERSTLEIAAALVAAGHRALVVSAGGRLVQPLLDSGAEHLTLDIGRKSLLTLRHLPTLRRLFAEIGADIVHARSRLPAWLGLYAIRALPAAQRPHWVTTVHGLNSPSRYSAVMTSGERVICVSNTVRDYVQRHYPTVPEQALQVIPRGVDVAQFPRVARADRRPRMALAAEYPWLAQVEGPLLLLPGRGTRLKGHAHALQLLADVRAAGVPAQLWMLGTDEPGREAYVADLRRQAAALGVAEAVHISTPTARIAQAYAASDLVLQLSDKPEAFGRTVVEALSVGRPVLGWDHGGVGELLRQLQPAGAVPLGDARALGERALALLAQPPSLPTRIPFTLQAMQRDTLRLYADLAG
>LS483406.1|SQG68881.1|3839471_3839669_-|Uncharacterized-protein-conserved-in-bacteria
MSHTATAPANAEKRYTVHRSDLPLSCPTPEMALWNSHPRVYLPIEDEPNGEAQCPYCGSVFVLAD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483406_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483406_5

3922660-3922790

Orphan

Consensus_repeat	Method
GTGCCGACCGAGGTCGGCACCTACCAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of LS483406_5

>merge|LS483406|5|3922660-3922790|CRISPRCasFinder
GTGCCGACCGAGGTCGGCACCTACCAGAGCGGATCATGGCGTCGATTGGCCCTGTGCCGACCAAGGTCGGCACCTACCAGCAGGTCATGGCAGCGAGAAGCATCGTGTCGGCCAAGGTCGGCGCCTACCAG

>LS483406|5|5|3922660-3922790|CRISPRCasFinder
GTGCCGACCGAGGTCGGCACCTACCAG	AGCGGATCATGGCGTCGATTGGCCCT
GTGCCGACCAAGGTCGGCACCTACCAG	CAGGTCATGGCAGCGAGAAGCATC
GTGTCGGCCAAGGTCGGCGCCTACCAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483406.1\|SQG68962.1\|3933334_3936043_+\|TonB-dependent-outer-membrane-receptor-protein	unknown	unknown	gnl\|CDD\|273804
LS483406.1\|SQG68944.1\|3909931_3912793_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
LS483406.1\|SQG68959.1\|3929396_3930464_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
LS483406.1\|SQG68955.1\|3922817_3925847_-\|autotransporter-protein	unknown	unknown	gnl\|CDD\|238654
LS483406.1\|SQG68945.1\|3913063_3913474_-\|biopolymer-transport-protein-ExbD/TolR	unknown	unknown	gnl\|CDD\|223917
LS483406.1\|SQG68949.1\|3918190_3918829_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483406.1\|SQG68964.1\|3938617_3939010_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|227939
LS483406.1\|SQG68951.1\|3920390_3920723_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483406.1\|SQG68957.1\|3927212_3928361_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
LS483406.1\|SQG68961.1\|3932171_3933191_+\|N-acetylglucosamine-kinase	unknown	unknown	gnl\|CDD\|237092
LS483406.1\|SQG68948.1\|3917067_3917502_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|377787
LS483406.1\|SQG68958.1\|3928360_3929389_-\|glucosamine-6-phosphate-deaminase-[isomerizing],alternative	unknown	unknown	gnl\|CDD\|225132
LS483406.1\|SQG68950.1\|3918825_3920310_+\|hemolysin-related-protein	unknown	unknown	gnl\|CDD\|238287
LS483406.1\|SQG68963.1\|3936154_3938512_+\|beta-hexosaminidase	unknown	unknown	gnl\|CDD\|119333
LS483406.1\|SQG68946.1\|3913670_3915656_+\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
LS483406.1\|SQG68952.1\|3920726_3921764_-\|nisin-resistance-protein	unknown	unknown	gnl\|CDD\|367567
LS483406.1\|SQG68960.1\|3930503_3931793_-\|N-acetyl-D-glucosamine-permease	unknown	unknown	gnl\|CDD\|340952
LS483406.1\|SQG68956.1\|3926145_3927213_-\|transmembrane-protein	unknown	unknown	gnl\|CDD\|226749
LS483406.1\|SQG68953.1\|3922175_3922610_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483406.1\|SQG68947.1\|3915767_3916988_+\|tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|182810

Protein	Function_ID	Function_description	E-value
LS483406.1\|SQG68962.1\|3933334_3936043_+\|TonB-dependent-outer-membrane-receptor-protein	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	1.35532e-172
LS483406.1\|SQG68944.1\|3909931_3912793_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.57792e-29
LS483406.1\|SQG68959.1\|3929396_3930464_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	8.65071e-119
LS483406.1\|SQG68947.1\|3915767_3916988_+\|tRNA-nucleotidyltransferase	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
LS483406.1\|SQG68945.1\|3913063_3913474_-\|biopolymer-transport-protein-ExbD/TolR	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	8.79729e-15
LS483406.1\|SQG68964.1\|3938617_3939010_-\|VanZ-family-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	0.00182741
LS483406.1\|SQG68958.1\|3928360_3929389_-\|glucosamine-6-phosphate-deaminase-[isomerizing],alternative	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	1.67347e-114
LS483406.1\|SQG68957.1\|3927212_3928361_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	3.55436e-167
LS483406.1\|SQG68961.1\|3932171_3933191_+\|N-acetylglucosamine-kinase	gnl\|CDD\|237092	PRK12408, PRK12408, glucokinase; Provisional.	0
LS483406.1\|SQG68948.1\|3917067_3917502_-\|Uncharacterised-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	1.24916e-09
LS483406.1\|SQG68950.1\|3918825_3920310_+\|hemolysin-related-protein	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	1.79282e-11
LS483406.1\|SQG68963.1\|3936154_3938512_+\|beta-hexosaminidase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
LS483406.1\|SQG68946.1\|3913670_3915656_+\|lytic-murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	2.83708e-72
LS483406.1\|SQG68952.1\|3920726_3921764_-\|nisin-resistance-protein	gnl\|CDD\|367567	pfam03572, Peptidase_S41, Peptidase family S41.	1.7476e-11
LS483406.1\|SQG68960.1\|3930503_3931793_-\|N-acetyl-D-glucosamine-permease	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.75863e-120
LS483406.1\|SQG68956.1\|3926145_3927213_-\|transmembrane-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	6.56897e-50
LS483406.1\|SQG68955.1\|3922817_3925847_-\|autotransporter-protein	gnl\|CDD\|238654	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43, AIDA-1 and IcsA, as well as, the less characterized ShdA, MisL, and BapA autotransporters.	5.43512e-38

>LS483406.1|SQG68953.1|3922175_3922610_+|Uncharacterised-protein
MNTPHPTYPRLQALLGAALPGLQLPTTAAEALEDALAEANEQAPPSAFFARLRGIAHSHAADGQAWRERQLSEGRGRELAEATRCLAALSACGGVLLAAQSARETDDAQAQCPPQVEECLLQAVVVLADHASALVEADACAPLL
>LS483406.1|SQG68952.1|3920726_3921764_-|nisin-resistance-protein
MQVRKGVRRIGALMLVLLATGAMADTPGAVEVPSPVAQAEILNLLERQALYRDRVDWAATRVRLQSAQGDPAQRLAVLREAIAVSTGNHGVWTTSQRQSEFLARAQQAGAAAVDRAKAADAVDMRIGWVVIEGYASTPGATPQEKFRQDIQRAARWQQVIRSKDDGARCGWIVDLRDNSGGNMWPMLLGMAPLLRTSVVNNEDVGSFETAQGPERWTLTATAVQRAGKSVLDFGQSGYVLRQPRAPVAVLFGPRTGSSGEASVLAWRGRPQARSFGQPTAGVSTGNVVQTLADGSRLLLTTTVMRDRNDRGDGLKIEPDQRIEGDAATLAAAEAWLLAQPACQGR
>LS483406.1|SQG68951.1|3920390_3920723_-|Uncharacterised-protein
MILIGQQERVVVVGPTEAHHCLRCQTETEFAPQLRYKMARIDLLFGLTYQRRYELACTRCGHGWVLDTETMDQQLGGVPIPWRHRFGLPLMLVVVGLAVAGWMWRNLYSS
>LS483406.1|SQG68950.1|3918825_3920310_+|hemolysin-related-protein
MRPLTNAALANAAYSPPSHPAPGDKESLRVDGEDFEVLGRRDAVSGYQGVVYRNIKTNEIIIAHRGTEFDRQAILDGGVDAAMVSARVNAQIDDALVLTKQAIKQAEENGYGPVYVTGHSLGGALAQITAYHYNLPGDAFNPYGAAGLAYRLPEGQPANAAPFTNHVMAGDLVSAAGPHYGKVEMYALPKELGVLRDAEQGQRIASLVSLGMKSGHVMSAAVAVQLGDSHRMVHFIDRMTDKGPVQSVLDDPGARITDAEDLRRIAEYRKDIHQLRLGATVLVGGGPGLLRDGVNYLRGTGEAGAYARREAEAVQHAESALKAGERPVQEATEKGSPSLSNPGFAPKSPLQESIESTLDKAGLDPRKEGHPDHALYRQIRDGVSAVDARHGRGFDETSERVTAGLLATAKRSGLERVDHVVLGNPPSDGSGPRMFVVQGAFDNPAHLRASIAVSEAVNTPVDQSLAKVEQISQAQQVAQQEQTQEQTRTAMRMG
>LS483406.1|SQG68949.1|3918190_3918829_+|Uncharacterised-protein
MLKPSPSLTHVALIALITLAVSGCNKERSYPVYRENPAPKDALPIVIRVHDAPVELTLPKVFVSYEIDPLCLPPINNYEGVQYAPQRHSVEFPVQRVSATEFSSTVFEDGMAVADYYGRGPCEWKPSIIRASFPVISEGREGFISVAVHHLELKNLLTSVSYADSQMTLQTKSSTPGWVRTQSQYSYNRLSDIEKQKYFAIEISSPSKGIVP
>LS483406.1|SQG68948.1|3917067_3917502_-|Uncharacterised-protein
MDHDTPFEPLNDLEVRLLQAQDGTLTASQFLDGLLTSTAFVLLDKAIGEDGAWDESISPLVLTSESGEPMFAVFTAPERAGLWHEQLPQFAHAMPIAVHALLAGIGDGVGLVLNPGLDVGMEMIPDAVAQLKQRAAAITRGMAH
>LS483406.1|SQG68947.1|3915767_3916988_+|tRNA-nucleotidyltransferase
MKIYLVGGAVRDRLLQRPAGDHDWVVVGATPAQMEAQGYTAVGRDFPVFLHPKTGEEYALARTERKSGRGYRGFVVDADPGVTLEEDLQRRDFTINAIACDEDSGALVDPYGGVRDIEQRVLRHVGPAFVEDPLRVLRAARFMARFAPLGFTVAEETMALMREIAASGELDALVPERVWQELRKALVSERPSAFLRTLHDAHALGPILPELEALYGVPQRAEFHPEVDTGIHQEMVSDMAAKLAPGDDLVGFAALTHDLGKGLTPPEEWPRHIMHEQRGIKPLKALCARLKIPAEHQQLAEAVCREHLNVHRIDELRDATVLELLGRCDALRRPERVARIALCCEADKRGRLGFEDADYPQGETLKRLHQAALSVQARDLDTTHLKGPAIGEALAKARVKAIAAAR
>LS483406.1|SQG68946.1|3913670_3915656_+|lytic-murein-transglycosylase
MLGAMTRRSSTALSLLPLATTLLIGCANAQSLDAQNAQLKAAIAAAERGQFDPGQAAALSRHPAYGWLEYANLRRNIDTVDTAQAQAFLKRYDGQAVANTFRSVWLPSVARRQDWPTLLANWAPTDNVGLRCAQLTARQVTGKVDPQWISEAQDLWRKNGKSLPDGCDAVFAVLQAQGGLSDALRWERIDAAADAQQPAVMRSAARGLPAADLAQANSYAAFVDKPNASALNWPRNERSRRIATDGLAKLAKADPAATEQQLPQYAQALGLSAEQQGQVLYQIALWTVASYLPDSARRLNAVPESAYDERLHEWRVREAMSRGDWPAALTAIRKMASKQRSDPRWRYFEGRMLEKTGQSQQAQPLFREAARAPTFHGFLAADKLQQGYTLCPWKPNDSAQAQEVIARDPAIQRAMALYQIDRTGWAVAEWNSALSRFDDTQRRLAVRVAQDNGWFDRAVFALGKQPQEQRLYDLRFPLHHDATIRRESARNAIDPAWVAAEIRAESTFTPRARSPANAMGLMQVLPATGAGVAKSIGLTGYGGADSLYDPDTNIAIGTAYLRQLMNKYDGLPYVTIAAYNAGPTPTARWQGQRPGFDPDLWIETISYKETREYVARVLAFSVIYDWRLNGDALPLSDRLMGRLVDKRKSFSCAANADQGGD
>LS483406.1|SQG68945.1|3913063_3913474_-|biopolymer-transport-protein-ExbD/TolR
MRYASVHARALMSGINLAPLVDVLLVLLALVVTTLPMAQTTAVRTFQQGTVCPPGPGHTPPASIALHLDAAGGVYWNDRPLDDPSLQHALAQLQQLPPALQPSLHLTTADSTDYGDMARVLFAIEGRGLRVTAQGY
>LS483406.1|SQG68944.1|3909931_3912793_-|TonB-dependent-receptor
MKYLHHRPLAVAVALCVTALAPLGAAAQSTTNLDAVEVTGTRIKRAEVEGQVPIQTLTRGDIERTGLTSIGEVLQQLTGSGSALNAKFNSSGNFGFPPDGSGVGAGSAQVDLRHLGAKRVLVLVDGIRWVNESSASGVGSATDLNTIPLAIVERIEVLEDGASSLYGSDAIAGVVNIITRRDFDGGQVTLNYGEYSKGDGTQKGVDLAWGKSGDRFSLFLGASWTKQDPVFAKDREQSRFPIPGTGLAFGSGGIPQGRFMFTDPNTGAVQNIVPNTGVSNPRYDGSAGCSRTDDYHCFTTADRFNFAEYNMVLTPSERKGLFGQFRFDITDNVQWYVKALGNRRESTNQAGPEPLFFGPDGATGNPLADNIVVSRLNPYNPFGFDLVSGDNMSLIGRRPVEGGARVFKQKVDTTYFATGLVGDFHAADRSWYWDVNGMYSKNKAEQTNYGSYDIYKVNMALGDPSVCAATPGCVPLNIFGGVGSITPDMLKWIQPVVRDRSQNELSLFTANLSSELFSLPAGPVSFATGFEYRKYKGSYQPDPLTVIGHYNGVPSQPTSGSYDVNEAYLELSVPIFADSSFGKKLDLSLAGRYSDYSTFGGEFTPKYGLRWQVTDDFVLRTTYAEGFRAPSIGELYGSAARADLQLFDPCSVGLGGTPPRGSAANCAALGVPAGFQQANSQISVTTGGNRELEPERSRSFSAGFVWSPWFGNNASWSERFDVEVTFYRHAIDGAIQAINAQTQLDLCVDTLDPVYCDGITRASTGAVSSFNNRLTNLGSIKTDGWDVDLFWTLPQTSIGQFKLAWKNTFVGRYEATGAAGQKQPQKPGVEVADSSIPEWTSNASIGWTMDRWSANWTVRHISELTENCGDAAAFPVCSNQAAGTNTLSATTFHDMQVGYKIDWMKGLQLTAGLNNVFDKDPPICLSCSLNGYDASTYDIPRGRYWYLRADLRF
>LS483406.1|SQG68955.1|3922817_3925847_-|autotransporter-protein
MYRAVPRAFRPRRLAVSVLQALAVPSLLLTTASVAWAGCNSPAPTAGQTVTCDTNAPNPQTTPVAANGAAGITVNVAAGAQLQQSGGGSAIALVGAGGHLLSNQGAISSVGGVTVQLGGGSRVDNTGSISTGNNTALQFVGAGDSVLVNRGAISGRTGVQFDAGNDRLEMQSGSITGGVLQGDGNDVLLLSDGTIDSVDQGGGDDQMTVTGGAVTGVVAQGSGRDDFIMSGGTIGALQQGDNIDTFRMSGGRIIGAFEDGDQAWMTAGRIGRVNMKLDKNLWDQSGGTVDGNVVTGFDTDTIIISGTAYIGGNISVSGGNDSVTITDGTVRGQVLLSTGSDTFNWSGGGIVYGAIDMGPDNDVANLSSLNQGNLGAVPLFDGGSGIDQLNFNNVKTTGVGRFQNWEAISLANSTELTFDGDLVLGDSGTGTGTLTVDDTSTVYAGSGSHAVRPFNSGALVEMVNAGRIDLTGTGAGDVFTVRGNYRGDGGGLYLRTVLGADNSTSDRLVIDGGAVTGTTGIGVLNAGGSGAATLADGILVVQALNGGRTAPGAFSLFAPVAAGAYEYFLFKGGVSAGTSENWYLRSTLVAGPAPAPNGSGINGVPPPPTPPVAPPPPITPAPPPPPEGAPDPDLTAGETAPPPPPPEPAPVAPPSDPAVPDVPVAGGALPGTGAPPTPGARPAEGAVVPLYRVETAAYAVVPPLLRETSLASLGTFHERQGEQRLLYSQGAFRTAWGRLVGQSSEIHWKGDSQPGFDGDVMGLQAGLDVWAAASDNHRNQIGVFVGRTRAQGKTTGLALGWENVQVGQNRLDDKHVGLYWTFTDSSGGYIDAVAMQSRYDGRVRSSRGLGFGIKGDGTSVSVEAGKPLLHFGQSAWWLEPQVQVIWQRTSLDDRRDEVSSVRFDNDNAWTGRIGLRLAGDYQLADNGWQPYFKLNYWHGRSGEDRVGFDNDTIINSQRSRALEAGVGVVGRFNRTISAYAVADYTRELGGDRNEKRRIIEGNIGLRADW
>LS483406.1|SQG68956.1|3926145_3927213_-|transmembrane-protein
MNSSPPRRLGSIDALRGITVAAMLLVNNPGDWSAVFAPLRHSEWHGCTPTDLVFPFFLFLVGVSMAFSVAPRAQDAAARPALARGVLERALRILVAGALLHLLIWWALDTHHFRIWGVLQRIAVCAALVGVLAVYVRPRVQVGALIALLVGYTVLLLGIGDLAPWTNPASRLDTALFAPWIYQWHADTGLGHDPEGLLSTLGALASTVLGLLAGGLLRNVRSAALAGLGVATAVLGLLLAVVLPLNKQLWTPSYVLWTGGLAALALWLGHVLIDQKGWPALGRRFGVNAITAYLGASVMSVVLMATGIWGWIWQQLATAMPQALELASMLQALVFVALWWGVAWWLDKRKIYLKI
>LS483406.1|SQG68957.1|3927212_3928361_-|N-acetylglucosamine-6-phosphate-deacetylase
MATVLRNARILAGDEFRDDLAVVIEDGRISALLPDAAPQLGHAAEQVDLGGGWLLPGFIDVQVNGGGGALFNNTPDVASLRTIAQAHRRFGTTAMLPTLISDDVGVMRDAIAAMREAIAQGVPGVIGIHLEGPYIAPARKGTHDPSKFRVPDEEEIALAASLDNGVTLLTLAPERVPLETIRALVERGVIVAAGHTAGTYEEIRAGLDAGVRGFTHLYNAMSPLQGREPGAVGAALEDRDSWIGIIVDGVHVHPASLRVALAAKPRGRLLLVTDAMPPVGADDPSYVLYGETITAINGVVRNAAGSLAGSALDMATAVRNTVQLLGQPLAEAARMASTYPAQFLNVDDRLGHIAEGYQADLVLLDDALQVRGTWIAGQYEAA
>LS483406.1|SQG68958.1|3928360_3929389_-|glucosamine-6-phosphate-deaminase-[isomerizing],alternative
MSLSDPTSTLMFAEAAEAADVVARQFSRNHATMETLAASLRAAPPPFVVTCARGSSDHAATYGKYLLETQLGLVVASASPSVGSVYAAPLQLRGALFIVISQSGKSPDLLRNAEAAKAAGARVIALVNVEDSPLAQLADTVIPLHAGAEKSVAATKSYLASLAALLQLAAYWKQDSSLRAALDLLPDALREAWQCDWSAVTEGLVEATNLFVLGRGLGLGAAQEAALKFKETCSLHAEAYSSAEVKHGPMALVDRGFPVLAFAQPDETGAGTRAVVEEFTARGAQVWMAGAGGNLPVAAAPHPLCAPLLTVQSFYRAINALALRRGFNPDLPPHLNKVTETV
>LS483406.1|SQG68959.1|3929396_3930464_-|LacI-family-transcriptional-regulator
MRRATIKDVAEKAKVSLKTVSRVINNEPSVMQATRARVLRAIAELDYEPDPSARNLRSGTTFVIGLVYDNPNPYHIIGVQNGVLAACRETGFGLQIHPCDSSSPLLADELADWVQRSRLAGLVLTAPMSERRDLIQALTARGIKLVRIIAATEDPADGACVFVDDREAAYEITEHLIQLGHQRIGFLWGGSSHRSSGERYAGYEAALKDYGMTVDKHLVVQGDYTFDDGFRGARRLLALREPPTAIFGSNDEIAAGVLAAAKSAGMNVPYDLSIAGFEDSPFSRQSWPPLTTAKQATEDIARHAARLLIAQLRSDAYDDAPAPLHNQGFVPQLVVRGSTAPMRPAGARPLPSDPA
>LS483406.1|SQG68960.1|3930503_3931793_-|N-acetyl-D-glucosamine-permease
MSAVSAASVRPNVATSIAIVGVLFFLIGFFTWLNGPLITFVKLAFELSEVGAFLVLMVFYLSYFFLALPSSWILRRTGMKKGLSLSLLVMAGGAALFGEFATQRWYPGALGGLFVIGSGLALLQTAINPYISILGPIETAARRIALMGICNKIAGMLAPVLIGTVVLHGIGDLSATVAAADEATKAQLLNEFAAKIHAPYLAMAGLLVLLAVAVLFSPLPEIKSSEANATPVAAGAAERRSIFQFPHLWLGVLCLFVYVGVEVMAGDAIGTYGHGFDLPLDQTKMFTSLTLGAMLVGYVVGLLLIPKVVSQSRYLTISAVLGVVFCLGAWATHGYVSVAFVALLGFANAMMWPAIFPLAIRGLGRFTETGSALLVMGIAGGAIIPQLFAVLKQHIDFQLVFVLLMVPCYLYILFYSVIGHRAGLPQDKA
>LS483406.1|SQG68961.1|3932171_3933191_+|N-acetylglucosamine-kinase
MTASHPAPAHVLSRIAPSFLAADVGGTHVRVARVQASGDAAHPVQVLEYRKYRNADHAGLSAILSDFLGEGPRPTHCVVASAGYAREDGTVITANLPWPLSARQVEADVGLQRVFIVNDFEAVAYAAAQVDASGVLHLCGPETAARGPTLVVGPGTGLGAALWIPTAHGPVVLPTEAGQPTLAASTELEMAIVRHMQRDRAHVSIEHAISGPGLMNLYRAVCALQGQAPTLASPDAVTAAAMADSDAHARQALDVFCGLLGSTIGDMALFYGAHGGVYLAGGILPQIREYLHASTFVERYLQKGPMGEALARIPVKVVEHGQLGVVGAASWYLQQQSAA
>LS483406.1|SQG68962.1|3933334_3936043_+|TonB-dependent-outer-membrane-receptor-protein
MNTRKTLLSAAIVSCIAFSAHAQQAAQTATDLDTVQVTGIRGSMEKSLDTKREANARVEVVTAEDVGKLPAHNVADTLQRLPGVNISSSSADEGGFDEADRVSLRGTSPSLTQTLINGHTVGTADWFVLSQGNNVGRSVSYSLLPSELVRSVEVNKSSQAKLQDGGTTGTVNILTRKPLEFSKQLTAEGSIGMVRSDQAKSNDPQLSALFNYKNDEGNFGVMVQAFSQKRELRREAQEIPGGFFQIDPNGTVAKSNPDLAGVYAPGLLGSTLFEQTRERKGGLVSLQFKPMDNLTLGLEGFSSELKANNYNRNFMLWGGRILNDRTVEDANGNKILIPGQAPNPGYVIKDGVLSNATFAGQADRDYAVYDMIYRESKAKTNYITFDADWQISDNLGMKFQAGSTKGTGETPRQYIAEVNLARGGGATWATHGNGSPIDWNVGGNIGPSGVSDFGTWGNQQVTAIDKEKWATLDFNQYFADAGVLNSIDFGARFGDHKREAKSPEGATPGAIWNALKNGATANFPGGFANGIGGSFPRDLWYFTPGALKEAVTNNSTWLSGNDGPTGRHNYGAEWTVSEKNFAAYVQGNFSGDRWSGNVGLRYVNIKQDIDTYAAATGSTVPDVSSLFGAWTREAFENKHNRVLPSANFKYDLRDDLVLRVAASQTQTLPDFSALGASSYGSDLNRTGGGGNPKLKPVVSTNFDANLEWYFMPRGMLSIGAYSMRLKDYVAFSTEKEMLFSELTNRLEEYNISRPRNADGKVRGIEVAYEQPIGEYFGVNANYTYADGSTDHTWADGSDNLLGTSKNTYNVGAYFENDTFGARVSYTRRSSFLIGLSGANPYYQDDFGTLSASLSYKATDWLSISFDALNLNNPTYKYYQTAAIPTSFYSNGRQYYLNFRFKY
>LS483406.1|SQG68963.1|3936154_3938512_+|beta-hexosaminidase
MVKPSRARMRSAVLLGSLLALLPALPALAADPTPATEAPGPLLRAGSLMLIPAPASVQRGQGSGITVRADTVLQAEGEAAQRVASQFADLLARSGGPRLAPASGKAAGTSGSIRFQIVPTFRDSGESYTLESTAQGVLIQAGNETGLFYGATTLAQLATGGSNGVLPEVQIQDAPRFSWRGFMLDSARHFQSLDEIKRVLDAMAAHKLNTFHWHLTDDQGWRMEIKRYPKLTDVGSCRLPAGDGGIDPVTGKEHPYCGFYTQDQIREVIAYAAKLHIQVIPEIDVPGHATAAIAAYPELGTIDTPLKPISEWGVFPNLFNTEDSTVTFLENVLEEVIDLFPAKYVHVGGDEAVKDQWEASKQVQQRMRALGIKDEMAMQSHIIKRLETFLEEHDRRLIGWDEILEGGLPPQATVMSWQGTEGGLAAASAGHDVIMSPVGYLYLDYLQTASPNEPPGRPTQVNLGKLYNFEPVPAELAADKRGHILGLQANMFTEHTRSYARLQHNLFPRLAAVAETGWSTPEHRDFRDFLARLPSQLQRYRAWGLAYAQTPFEVGVDYTDNRAANTVTVSLANPLGYEVRYSTDGQPVTAQSPLYQQPLTATLPTTVQAAAFYQGQMLAAKPTITAFTAQSLLSRRSDELLSCVGKKGLVLRLEDDGPREGNRAVFNVDIFQPCWRWPQAQLDGIGSLEVRAGRIPYYFQLAHDEPKRRFEKAKHAHGEMQVRRGDCSGKVLAEVPLPAKPDADGFVTLRAALPKGTQGGGDLCINFTGDTRPAMWVLDEVTLGK
>LS483406.1|SQG68964.1|3938617_3939010_-|VanZ-family-protein
MSEVLPAIKPLRRPRLWAGLWATAVLLVIVVCLIPPPPIPLPENSDKGEHFLAYFILAGSAVQLFRRGRPLLWVGVGLVLMGIGIEFAQGALTSNRMADPMDAIANTIGVLAGMATALTPLRDLLLRWRG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483406_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483406_6

3959583-3959683

Orphan

Consensus_repeat	Method
GCTCGCTGTAAGCGAGGGGCTGAGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483406_6

>merge|LS483406|6|3959583-3959683|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGTGAAGCGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATGGCTCGCTGTAAGCGAGGGGCTGCGGGT

>LS483406|6|6|3959583-3959683|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGT	GAAGCGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATG
GCTCGCTGTAAGCGAGGGGCTGCGGGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483406.1\|SQG68990.1\|3966982_3969058_-\|penicillin-binding-protein-2-(PBP-2)	unknown	unknown	gnl\|CDD\|274573
LS483406.1\|SQG68988.1\|3964656_3965751_-\|Rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
LS483406.1\|SQG68983.1\|3957904_3958183_-\|lipoate-regulatory-protein-YbeD	unknown	unknown	gnl\|CDD\|179161
LS483406.1\|SQG68979.1\|3952891_3953476_-\|lipoprotein	unknown	unknown	gnl\|CDD\|378349
LS483406.1\|SQG68985.1\|3959941_3961156_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
LS483406.1\|SQG68992.1\|3969543_3970809_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
LS483406.1\|SQG68989.1\|3965873_3966986_-\|Rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
LS483406.1\|SQG68986.1\|3961256_3962525_-\|lipoprotein-A	unknown	unknown	gnl\|CDD\|223868
LS483406.1\|SQG68993.1\|3970930_3971977_-\|Rod-shape-determining-protein-MreB	unknown	unknown	gnl\|CDD\|237562
LS483406.1\|SQG68978.1\|3951635_3952895_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483406.1\|SQG68980.1\|3953721_3955899_-\|tail-specific-protease	unknown	unknown	gnl\|CDD\|236873
LS483406.1\|SQG68994.1\|3972260_3973199_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238917
LS483406.1\|SQG68976.1\|3949891_3950494_+\|transposase	unknown	unknown	gnl\|CDD\|222853
LS483406.1\|SQG68977.1\|3950719_3951625_-\|6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
LS483406.1\|SQG68982.1\|3957206_3957917_-\|Octanoate-[acyl-carrier-protein]-protein-N--octanoyltransferase	unknown	unknown	gnl\|CDD\|237681
LS483406.1\|SQG68974.1\|3948071_3949115_+\|Oxidoreductase	unknown	unknown	gnl\|CDD\|183212
LS483406.1\|SQG68987.1\|3962521_3963643_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
LS483406.1\|SQG68975.1\|3949343_3949637_+\|ISXac3-like-transposase	unknown	unknown	gnl\|CDD\|366690
LS483406.1\|SQG68981.1\|3956178_3957189_-\|lipoate-synthase	unknown	unknown	gnl\|CDD\|235493
LS483406.1\|SQG68991.1\|3969061_3969547_-\|Rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444

Protein	Function_ID	Function_description	E-value
LS483406.1\|SQG68990.1\|3966982_3969058_-\|penicillin-binding-protein-2-(PBP-2)	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
LS483406.1\|SQG68988.1\|3964656_3965751_-\|Rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.06609e-141
LS483406.1\|SQG68983.1\|3957904_3958183_-\|lipoate-regulatory-protein-YbeD	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	1.56476e-63
LS483406.1\|SQG68979.1\|3952891_3953476_-\|lipoprotein	gnl\|CDD\|378349	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242). This domain is found in various hypothetical bacterial proteins, and has no known function.	9.93936e-62
LS483406.1\|SQG68985.1\|3959941_3961156_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	6.82586e-149
LS483406.1\|SQG68992.1\|3969543_3970809_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	4.57461e-87
LS483406.1\|SQG68989.1\|3965873_3966986_-\|Rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.19066e-144
LS483406.1\|SQG68986.1\|3961256_3962525_-\|lipoprotein-A	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	2.6784e-51
LS483406.1\|SQG68993.1\|3970930_3971977_-\|Rod-shape-determining-protein-MreB	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
LS483406.1\|SQG68980.1\|3953721_3955899_-\|tail-specific-protease	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
LS483406.1\|SQG68994.1\|3972260_3973199_+\|sugar-kinase	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116
LS483406.1\|SQG68976.1\|3949891_3950494_+\|transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.02279e-49
LS483406.1\|SQG68977.1\|3950719_3951625_-\|6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
LS483406.1\|SQG68982.1\|3957206_3957917_-\|Octanoate-[acyl-carrier-protein]-protein-N--octanoyltransferase	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	8.74975e-140
LS483406.1\|SQG68974.1\|3948071_3949115_+\|Oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	6.68043e-133
LS483406.1\|SQG68987.1\|3962521_3963643_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.31815e-137
LS483406.1\|SQG68975.1\|3949343_3949637_+\|ISXac3-like-transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	5.76383e-05
LS483406.1\|SQG68981.1\|3956178_3957189_-\|lipoate-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
LS483406.1\|SQG68991.1\|3969061_3969547_-\|Rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.1233e-30

>LS483406.1|SQG68983.1|3957904_3958183_-|lipoate-regulatory-protein-YbeD
MEIKSDNPDHGFQFPGQFELSAMGPANRGLEHELPRLLLAAGIDVVNERISWKHSSNGKYVSVRIVFKAESREQYDLAHQALRDHPEVKWTL
>LS483406.1|SQG68982.1|3957206_3957917_-|Octanoate-[acyl-carrier-protein]-protein-N--octanoyltransferase
MDAVADSCPAEAAPEDRAPRPALVRDLGRQAYEPVWRAMQRFTDQRSDTDADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLRLPRLGIGVRDYVCRIEQAIIDTLGEWNIGAERREGAPGVYVGGAKIAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLGGPSGMEAVKPVLLDHLARQFGLLLQHTPELPDLSAAA
>LS483406.1|SQG68981.1|3956178_3957189_-|lipoate-synthase
MTETTARSIPLQIVQGDSPSAAPLQAGVKQLGGDKINRSPVQFADAPVLRKPSWIRVRIPSGNAVQNLKAKLRENRLVTVCEEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPKPPDANEPASLGQTVADMGLKYVVVTSVDRDDLRDGGAQHFVDCITAIREKSPGTRIEVLTPDFRGKGRMERALEILAQNPPDVFNHNIETVPDLYRNVRPGADYQWSLNLLKNFKAQHPDVPTKSGIMLGLGEDFEQIKATLRDLRAHDVDMITIGQYLQPTAHHHPVLKYWTPEDYKALEDYGYELGFSHVASGPMVRSSYHADVQAKGAGVS
>LS483406.1|SQG68980.1|3953721_3955899_-|tail-specific-protease
MKFKAPAFLMALALVAPLALAAKADSPALPAAATADQVTTSKLVYGLLSDSRYAYRPRALDEATSKDVFKRYLETLDGGKQYFTQADVARFAPFEANIASAIRGGELEPAFQVFAVYKQRVGERVAYARKLLKQEPDFTTDERFEYDRKKVPWAASSAELDELWRKSVKNDWLRLKLAGKKPDDIRKTLDKRYATLEKSVNELKGEDVFQFFMNSYTSAVDPHTDYFTPRTAENFNQAMSLSLEGIGAQLQRQDDVVVIREIIAGGPAAVDGTLKPGDRIVGVGQGKSGLVEDVIGWRIDDVVAKIRGAKDTQVKLEFIPAAEGADGKHHTLVLTRQKVRLAEQAAKGETMTIPAANGEPARRIGVIKLPTFYQDFEGRRRNAADYASATRDVAKLLAGFKNDKLDGVVLDLRNNGGGSLDEAIELTGLFIEQGPVVQVRESGGRVTVNSDRNQGVAWDGPLAVLINRGSASASEIFAGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPSGETQRFGQVKLTIAQFFRISGSSTQHKGVVPDLAFPASVDATEFGESTYDNALPWTRIAAVPHTQYGNFAPLLPKLETRHDARIATDKEFQWWNEDVQQFRTEAAKKYISLNEATRRAERERQDTQRKERQVQRKELGLALDPLADDSSDDGLTGNERDIVKDAAREKAAEKRPDPLLRESASILADAVNLLANDRPLSAQVLPQSTGAGRWAD
>LS483406.1|SQG68979.1|3952891_3953476_-|lipoprotein
MRASRLSSVAVALASALILSACGGRAADSTLLRESFDSGDTFSRTVDGRPGDACEAARRTLLSQGYAIARSDAAQVEGNKNFQPREDDHEQLVLRISCAPRGSQTLVFVSAVQDRYALKKSPTSASVGVGALGSVSLPFGSNDDSLVKVASSTVTDAEFYRRFFQRLQQYLPADAAAPPAATTPEPAAAPTDLG
>LS483406.1|SQG68978.1|3951635_3952895_-|Uncharacterised-protein
MSVRGRLMGVALLLVPALGAASTSVDCVQGLLQRLGWRFEDAAVALPEVQGGPVCTRASLAAAQAAGDLHVRWPVDLPAASRQALLQQLLDDPATICAYAFELGAATQRAATALQGNPGFRFSGLQLGWIGFGLHGAQAQGWQRTRSFGRGFVPTAGNSQALQAFYSGNVRAECGVGRQVAQLATQRELYGDAAFDAGFSAEELSIGTFLALHDTDSILLGAHAGDYFADGKAVRTSAMGRQAFVGVPGFIEHVYDKGMLDDLSNQAENFVVVSVGEEAAQALAAHGGLAWYDQRNAELWALAQDIPRIGRRYFERLLFERDPDLRARLEPRYHATLARMDRLLDDPFYQQFVIYVHPRGIRPIGYPIARLLDRNPRTPFSIDLAVHNLHTTLYRRWREAQLRHCAATGRPGSLTLDPN
>LS483406.1|SQG68977.1|3950719_3951625_-|6-phosphogluconate-dehydrogenase
MDIAMIGLGRMGANMAQRLHRGGHRVVGYDPGEGARQRAAEAGLEVVDSLAAAVAALPVPRVVWLMVPAGETVDQTLGQLTPHLAEGDIVIDGGNSNYQDSIRRAKALAEDDLGYVDCGTSGGVWGLQEGYSLMVGGEAAVVEQIAPLLRTLAPAEDRGWGRVGPSGAGHFTKMVHNGIEYGMMQAYAEGFALMERKQEMELDLAQVAEVWRHGSVVRSWLLDLSTEALKRNPSLDGIAPYVEDSGEGRWTVAEAIALDVPAPVITLSLLERLRSRESNSFTDRLLSAMRNEFGGHAIKKS
>LS483406.1|SQG68976.1|3949891_3950494_+|transposase
MAEERIQGKTKGRFRPKSSGGSSQLAPNLLDRQFAPGTGPTAWVGDITYVPTRQGWLHLAVVISVQTRQVLGYSVSKRLTEELVVKAFANAWALHPQRPGLIFHSDRGGQYWGNEFRQLLQSHGVVQSMSRPGNCWDNAVAESFFATLKTEEAAEPYASREQASQSIAAYIHGFYNPARLHSALGYHSPNNYARQLRAAA
>LS483406.1|SQG68975.1|3949343_3949637_+|ISXac3-like-transposase
MSRITRRSYTDEFKHQAVELAESLGPAAAARQLEMSVKTLANWLDAVRAGRSLTSEARRPATDLESEISRLRAENANLKMEREILKKAAAFFARESK
>LS483406.1|SQG68974.1|3948071_3949115_+|Oxidoreductase
MRPDLQLALIGYGLAGRVFHAPLIQHTPGLVLHSIVSSQRDTLLRAFSDVHVRATPQEVFDDPAVDAVVIATPNEQHAPLAIAALAAGKHVLVDKPFALDVAEAEAVLAAARDAGRIATVFQNRRFDADFLTLQALLADGTLGDIAECHVHFDRYRPQVRDRWREQDGPGSGLWYDLGPHLLDQMLVLFGWPEAIDADLAVQRDGGSAIDYFHAVLHYPRHRAIVHSGSLVAAPTPHFSVHGSKASWIKHGLDVQEAQLRRGVAPGAPGWGIDPRHGELVRCDAEDNVQRSTVDNLPGDYRRLYAQFAAAMHGDGEATVDPVQALQLMRLLQAGMDSAREGRRIALG
>LS483406.1|SQG68985.1|3959941_3961156_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVIAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>LS483406.1|SQG68986.1|3961256_3962525_-|lipoprotein-A
MNIRWLVPSLIVFALAACSSAPKKPATAGHGGKSSGTVVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAAATAVASARPAPAPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPSAPVVRNSAPAPAVVASTAPRAVAPAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELVGRIAGLGLGSPQIVKD
>LS483406.1|SQG68987.1|3962521_3963643_-|lytic-murein-transglycosylase-B
MLTLGLVACATQPKSPPSSPQASSTPRQPATKAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREEKLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>LS483406.1|SQG68988.1|3964656_3965751_-|Rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSMLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTTTVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>LS483406.1|SQG68989.1|3965873_3966986_-|Rod-shape-determining-protein-RodA
MKVFLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>LS483406.1|SQG68990.1|3966982_3969058_-|penicillin-binding-protein-2-(PBP-2)
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTATPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHPVQVGAPTPEPAPAPQPGTPAAAAVPATPRPTVAEPAR
>LS483406.1|SQG68991.1|3969061_3969547_-|Rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>LS483406.1|SQG68992.1|3969543_3970809_-|rod-shape-determining-protein-MreC
MPPYAGPPVASRSGDAASPLRLLAYLALAITLIVLDDQAGWLARLREQANSLVQPVWALAGLPGKLGNQVKDSAASHTQLVTENRELRNQLLLANARLTRLQTAALDNAQLRELLNVAERSGLDVQLAPILDIDLDPVKQRLVLDAGSREGVHVGQAVIDAGGLMGQVISVTGGTSTVLLLTDPDHAVPVTVARNGVRLIVYGRGDTLELRDIPLSAGVEVGDEIVTSGLGGRFPAGFPVGTITGLRPDDTHAFLVGELKPAAQLDRGRDVLLLRPGAAIRIPPELRLQLEETTPGGPATGATVPAGAAPATTTPAPVSSPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQQPSSQARTVAPASSLDPAAPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQSTTPEAQR
>LS483406.1|SQG68993.1|3970930_3971977_-|Rod-shape-determining-protein-MreB
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>LS483406.1|SQG68994.1|3972260_3973199_+|sugar-kinase
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483406_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483406_7

4567469-4567572

Orphan

Consensus_repeat	Method
GTGGTTGCCGGCCAGCGGCCGGCACTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483406_7

>merge|LS483406|7|4567469-4567572|CRISPRCasFinder
GTGGTTGCCGGCCAGCGGCCGGCACTACCTGACGTCACATCCACGCATGGCGTGGATCTACTGCCAGGCCGATGAAGTGGTTGCCGGCCAGCGGCCGGCACTAC

>LS483406|7|7|4567469-4567572|CRISPRCasFinder
GTGGTTGCCGGCCAGCGGCCGGCACTAC	CTGACGTCACATCCACGCATGGCGTGGATCTACTGCCAGGCCGATGAA
GTGGTTGCCGGCCAGCGGCCGGCACTAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483406.1\|SQG69540.1\|4588767_4589514_+\|GMP-synthase	unknown	unknown	gnl\|CDD\|181635
LS483406.1\|SQG69528.1\|4565801_4566467_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225107
LS483406.1\|SQG69527.1\|4563778_4565722_+\|acetyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|234677
LS483406.1\|SQG69523.1\|4557761_4558529_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
LS483406.1\|SQG69539.1\|4586960_4588796_+\|type-II-secretory-pathway,-ATPase-PulE/Tfp-pilus-assembly-pathway,-ATPase-PilB	unknown	unknown	gnl\|CDD\|225363
LS483406.1\|SQG69520.1\|4556075_4556714_-\|rRNA-small-subunit-methyltransferase,-glucose-inhibited-division-protein-GidB	unknown	unknown	gnl\|CDD\|234637
LS483406.1\|SQG69533.1\|4575182_4576640_+\|transmembrane-heat-shock-chaperone	unknown	unknown	unknown
LS483406.1\|SQG69521.1\|4556753_4557353_-\|4'-phosphopantetheinyl-transferase	unknown	unknown	gnl\|CDD\|225002
LS483406.1\|SQG69526.1\|4562105_4563533_-\|porin	unknown	unknown	gnl\|CDD\|379826
LS483406.1\|SQG69534.1\|4576636_4577884_+\|transmembrane-chaperone-heat-shock-protein	unknown	unknown	gnl\|CDD\|365959
LS483406.1\|SQG69524.1\|4558660_4560070_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143451
LS483406.1\|SQG69525.1\|4560283_4561945_-\|sugar-transport-protein	unknown	unknown	gnl\|CDD\|340927
LS483406.1\|SQG69536.1\|4581749_4583534_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|223801
LS483406.1\|SQG69532.1\|4573497_4575186_+\|chaperone-protein-hscC-(Hsc62)	unknown	unknown	gnl\|CDD\|212677
LS483406.1\|SQG69522.1\|4557437_4557689_+\|transglycosylase-associated-protein	unknown	unknown	gnl\|CDD\|225170
LS483406.1\|SQG69529.1\|4566877_4567453_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|224882
LS483406.1\|SQG69538.1\|4585965_4586877_-\|glycyl-tRNA-synthetase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
LS483406.1\|SQG69531.1\|4571222_4573370_-\|peptidase-S46	unknown	unknown	gnl\|CDD\|371067
LS483406.1\|SQG69535.1\|4577895_4581753_-\|Family-of-uncharacterised-function-(DUF490)	unknown	unknown	gnl\|CDD\|225463
LS483406.1\|SQG69537.1\|4583802_4585878_-\|glycyl-tRNA-synthetase-subunit-beta	unknown	unknown	gnl\|CDD\|234925

Protein	Function_ID	Function_description	E-value
LS483406.1\|SQG69540.1\|4588767_4589514_+\|GMP-synthase	gnl\|CDD\|181635	PRK09065, PRK09065, glutamine amidotransferase; Provisional.	1.56126e-132
LS483406.1\|SQG69528.1\|4565801_4566467_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.47352e-58
LS483406.1\|SQG69527.1\|4563778_4565722_+\|acetyl-CoA-synthetase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
LS483406.1\|SQG69523.1\|4557761_4558529_-\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	6.99984e-136
LS483406.1\|SQG69539.1\|4586960_4588796_+\|type-II-secretory-pathway,-ATPase-PulE/Tfp-pilus-assembly-pathway,-ATPase-PilB	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	0
LS483406.1\|SQG69520.1\|4556075_4556714_-\|rRNA-small-subunit-methyltransferase,-glucose-inhibited-division-protein-GidB	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	7.2268e-83
LS483406.1\|SQG69521.1\|4556753_4557353_-\|4'-phosphopantetheinyl-transferase	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	7.7921e-31
LS483406.1\|SQG69526.1\|4562105_4563533_-\|porin	gnl\|CDD\|379826	pfam16331, TolA_bind_tri, TolA binding protein trimerisation. This is the N-terminal domain of the YbgF protein. YbgF binds to TolA. This domain mediates trimerisation.	8.96528e-05
LS483406.1\|SQG69534.1\|4576636_4577884_+\|transmembrane-chaperone-heat-shock-protein	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	0.00166611
LS483406.1\|SQG69524.1\|4558660_4560070_-\|aldehyde-dehydrogenase	gnl\|CDD\|143451	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.	0
LS483406.1\|SQG69525.1\|4560283_4561945_-\|sugar-transport-protein	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.89027e-120
LS483406.1\|SQG69536.1\|4581749_4583534_-\|outer-membrane-protein	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	1.04126e-146
LS483406.1\|SQG69532.1\|4573497_4575186_+\|chaperone-protein-hscC-(Hsc62)	gnl\|CDD\|212677	cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins. This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF.	0
LS483406.1\|SQG69522.1\|4557437_4557689_+\|transglycosylase-associated-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	3.33495e-10
LS483406.1\|SQG69529.1\|4566877_4567453_+\|integral-membrane-protein	gnl\|CDD\|224882	COG1971, COG1971, Predicted membrane protein [Function unknown].	5.76094e-59
LS483406.1\|SQG69538.1\|4585965_4586877_-\|glycyl-tRNA-synthetase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
LS483406.1\|SQG69531.1\|4571222_4573370_-\|peptidase-S46	gnl\|CDD\|371067	pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7 (DPP-7) is the best characterized member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.	0
LS483406.1\|SQG69535.1\|4577895_4581753_-\|Family-of-uncharacterised-function-(DUF490)	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	0
LS483406.1\|SQG69537.1\|4583802_4585878_-\|glycyl-tRNA-synthetase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0

>LS483406.1|SQG69529.1|4566877_4567453_+|integral-membrane-protein
MSPISILLIGFAMSTDAFAAAIGKGAAMRRPVFRDALRAGIIFGVIEAITPIIGWLLGRAALQYVEAFDHWIAFGLLGALGIHMIYNGLRPDSAEEDEDPSQHHGFWKLALTGFATSIDAMAVGIGLAFMDVHIGVMAAVIGLCTLTMVTVGIMLGRVLGSMVGKRAEIIGGVILVIIGATILYEHLHGVG
>LS483406.1|SQG69528.1|4565801_4566467_+|LuxR-family-transcriptional-regulator
MTTLLIADDHPLFREALRGAVQRVIPGVQLFEADSVEALYALADQHNDADLVLMDLNMPGAQGFNALVHMRSLHPHLPVVVVSAREEATVMRRALDHGALGFIPKSADSDTIGHALGTILDGETWAPPEAHNVPPTEREEREVGQRLRELTPQQFRVLQMLGAGRLNKQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMAGKLAIDDDAIVLPPEED
>LS483406.1|SQG69527.1|4563778_4565722_+|acetyl-CoA-synthetase
MADIYPVDPQFAAKARIDKTSYEQQYQASVTDPDGFWGKAAERLQWMRKPTRIKNVSYDLSDFHIKWFEDGELNASVNCLDRQLETRGDKTALLFEPDGPDAPAQHVTYRELYERTCRLGNALRNLGVKKGDRVTIYLPMIVDAAVAMLACARIGAIHSVVFGGFAPNSIADRVSDCQSKLIITADEGLRGGRRIPLKANVDAALKLPGTNTVETVLVVRHTGGAVDMQAPRDRWFHDVVDSQPATCEPERMNAEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAYTHEAVFDLREDDIYWCTADVGWVTGHSYIVYGPLANGATSLMFEGVPNYPDTSRFWNVIDKHKVTIFYTAPTAIRALMREGEEPVKKTSRASLRLLGSVGEPINPEAWRWYYEVVGDSRCPIVDTWWQTETGGILISPLAGAMDLKPGSATLPFFGVQPALVNADGEIQDGPTEGNLIIRDSWPGQMRTVYGDHQRFIDTYFRTYPGSYFTGDGCRRDEDGYYWITGRVDDVINVSGHRIGTAEVESALVSHPKVAEAAVVGFPHDVKGQGIYAYVTLVAEEAPSDELHKELIAWVRKEIGPIATPDHLQWAPGLPKTRSGKIMRRILRKIAENAPDQLGDTSTLADPSVVASLVDERKVR
>LS483406.1|SQG69526.1|4562105_4563533_-|porin
MSHRTLKAVRTPLAACLLVALVAPGMAFAETAKEKALEARVAELERQVQLLLSSQQQQQTQISQTQQAVTEVRTVQAGQKPVASVPAGKQPIQVTTITPGAAPGTTVKIGGFIKADFLATQTSDGQLADDATGRSLYLPGQTPVEGAGGSGKRSGTDFNAHAKFSRFNLGIDNVSESGNKAGAFFEMDFFGNSLGNQTATNTYGVTLRHAYMYWNNWMAGQTWSNFMDAASLPEAVDFVGPTDGVIFVRQAQVRYTQGGFSVALENPETTTLTGTRNPVTGAWTNASANSDRGSLPDLTLRYGWKGNWGTFGVGGIVRQLKVDNQATGAKADKVAGGLTLGGKWVMGDSDSLHYQLTGGEGIARYIGLGITADSAYDVARDELNPTGVLAGYVGWRHAFSPKLRTNLIYARSDYDNDSILGPLVTKSVQSIRGNIFYSPLPKVDIGAELMYGRREVENGNKGDITRLQFTTKYSF
>LS483406.1|SQG69525.1|4560283_4561945_-|sugar-transport-protein
MSSTPSTAHKAGTLTKGHKKVIFASSLGTVFEWYDFFLYGSLAAIIAKQFFSGVNETTGMIFALLAFAAGFFVRPFGAAFFGSLGDRIGRKYTFLVTILIMGISTFLVGVLPNYASIGFAAPVILIILRLAQGLAMGGEYGGAATYVAEHAPDDKRGLYTSFIQCTATLGLFMSLLIILACRYFLGNEAFEAWGWRIPFLVSILLLGVSVWIRLQLSESPLFQQMKSEGKGSKTPFRDSLKGGNLKLMLLVLLGAAAGQAVVWYGGQFYALFFLSSMLKVDATTSYLLIAAALALGVPFFIFFGWLSDRIGRKKIILAGCLLAAITYIPIFKGLTHFANPAIEEARASSPALVVADPNTCSFQFDPVGLRKFTSSCDVATAALTKAGVPYDVQPAAAGSLAMVNVGSASVTSYEAAGLTKEEGKAKADAFGAELKTALTTAGYPAKADGARINIAGTIFMLWLLVLYVTMVYGPIAAYLVELFPTRIRYTSMSLPYHIGNGWFGGFLPAISFALVAGTGNLYYGLWYPIIIALMSVVIGGLFLRETKDVDITK
>LS483406.1|SQG69524.1|4558660_4560070_-|aldehyde-dehydrogenase
MTTTTPEDLPALLHTLRSAWQSQRPSLDQREADLRRLREALKPRLDEMAQAIAEDFGHRAHVESKLADGMSVLSAIDHLRRHLRRWSKPQRASAGWKLWPARAQLRPTPLGVVGVISPWNYPVTLALVPLATAIAAGNHVLLKPSEHTPRTSAFLADLLASVFPPDRVAVVQGGADVAEAVSSLPLDHLLFTGSTAVGRKVMAAAAEHLVPVTLELGGKSPAIVCRDFPLDKAAARLATGKWFNAGQTCIAPDYVLIDTVRQREFVQALQQQVRERYGDFSDADDYTRIINEGQYRRLQGYLAQARERGVPVIPLAQVDEARADRERLLVPTVVLDPPDDLDLMREEIFGPILPVRAYPDLDAALADVLSRDRPLALYPFSHDTATVERILRQVVAGGVTVNDTLLHFAADGLPFGGVGASGMGAYHGRAGFDAMSKRLPVLWQSRWAASDRLRPPYSKIAGLLKLLLR
>LS483406.1|SQG69523.1|4557761_4558529_-|exodeoxyribonuclease-III
MKIASWNVNSLNVRLPHLEQWLREFGPDIVGIQETKLEDHKFPDSALIAAGYRSVFAGQKTYNGVALLSRESAQDVQIGIPGFEDEQKRVIAGTFGDLRVINLYVVNGQDIGTDKYDYKLRWLEAVHAWIAEELQRHPKLIVMGDFNIAPDARDVHDPEVWNDNHVLTSTAERGALNKLLQLGLHDGFRLHNDEAGTFSWWDYRAAGFRRNLGLRIDLTLVSDALKGSAVASGIDREPRTWERPSDHAPAWVQIG
>LS483406.1|SQG69522.1|4557437_4557689_+|transglycosylase-associated-protein
MGIIIWLIVGGIVGWLASIIMKRDAQQGIILNIVVGIVGALISGWLFGGGINEAITIRTFLFSLIGAVILLAIVNLFTRKSIR
>LS483406.1|SQG69521.1|4556753_4557353_-|4'-phosphopantetheinyl-transferase
MSLPATLDGPWRFGPVTVWRRPHVPGQRGEPQARQVLAQALGTDPQTLPLVRDDKGRPELSGPLAHYGTGWSHSGEVLLVALGEGVRLGVDLELLRPRPRLLEIVRRFFHPQEVAWLERLDEADREHWFFRVWCVKEAILKAHGQGISFGLHRLQLAPGADGALHLRWCAPELGEAARWHLHEWQATGQFRAALAWYPH
>LS483406.1|SQG69520.1|4556075_4556714_-|rRNA-small-subunit-methyltransferase,-glucose-inhibited-division-protein-GidB
MSEHPLPASVVATLEQGLASMGLDAALAPPLLRYLALLHRWNGTYNLTAIRDPQEMVTRHLLDSLAMQPFVADGSLADLGTGPGLPGIPLAIACPGLQVTLVESNGKKARFMREAVRQLGLGNARVAESRAEALDEAGRYDQLTARAMDTLAGIVRVGGHLLRPGGVLLAMKGVYPHEEIAELPAGWQVREVTPLSVPGLAGERHLVTVTGP
>LS483406.1|SQG69531.1|4571222_4573370_-|peptidase-S46
MSSRKALPTALALGLTLAAGAHADEGMWMPTQLPELAKPLQAAGFKGNPADLANVTAPPLSAVVRAGGGTGSFVSADGLLLTNHHVAMGVIQYNSSPEHDLITGGFIANGRADERPANPDFRVLVTVGFDKVTDQVLAQARGKTGRAYFDAVDAASKQIVAECEKDGSVRCSVANMYYGTDFYRIAQLELSDVRLVYAPPRAIGNYGDEIDNFMWPRHTGDFTLLRAYVGKDGKPAAYSKDNVPYQAPAHLQMSVEGPKEGDYAMLAGYPGITYRHRTAAEFAGQIDTVLPRRVSVFQQMIDTIEAASAKDAQARTRYASQLQSLKNNRKRAAGELEGLLRSDAKAQRAADETAMLAATDRKYQGDIKALLANLSQGAAVGERDLLLDQMAAQSQLLRSALLLERLRIESAKPDAQRESGYQQRDQAMIEGVLKQVQRRYAPEVEKALLTTLLTRYQQLPDAQRVAEFDAAFGRTPQQLAKALDTLYAGTQLGDEAQRLSRFAAAREGKALAADPLIAVAGPLVAAQLRIENESKTREGEQLRLRPAYMQALFAWRAKQGRAVYPDANRTLRISYGKVEALHPRDGVTYSPVTTVAGIVEKNTNAYPFDAPKPLLAAIAKGDFGSTADPALKTQTVNFLTNLDTTGGNSGSPVLNAKGELIGLNFDSNWESVSASWWFDPRYKRAVHVDMRYLRWLLAKVYPAPELLKEMGVPAQ
>LS483406.1|SQG69532.1|4573497_4575186_+|chaperone-protein-hscC-(Hsc62)
MIVGIDLGTTHSLIGVHSSDGPRLFPNAHGELLTPSVVSLVDGAVLVGQPARDRLVSHPQQTVAHFKRWMGSDRETRLGERSFRPEELSAMVLRSLLADAEAALGHKVEEAVISVPAYFSDAQRKATRAAGELAGIRVERLINEPTAAALAYGLQERDGEGCVLVLDLGGGTFDVSILELFDGVVEVHASAGDNFLGGEDFLQVLVRAFHADQGTSTSDLSAAEQAQLLRRLELFKRELSLSGAASLQLPLAGSERQWQMDEARYTQLCEPLLLRMRGPIERAIRDARLKPDALDDIILVGGAVRMPMVSKLATRMFGRLPLRHIHPDQAIVLGAAVAAGLKARDESLREVVLTDVCPYTLGTQVSRQDAAGGERSGYFHPIIQRNSVVPVSREDRFYPLHERQDAIRIDVFQGESPTVDRNIKLGELTVPLTHSVPIQERSVTARFTYDVNGLLQVEVTEDATGKRHELILEQNPGLLSPEEIQQRLRALEALKIHPRDAQPNLAVIARTERLYEERIHHREQLQSWLSSFRHVLESQDAIAVERHRRQLDEALDTLERDA
>LS483406.1|SQG69533.1|4575182_4576640_+|transmembrane-heat-shock-chaperone
MSWALHVLELDEAADERAIKRAYANRLRVTRPDEDPIAFQHLHEAYQAALDWVRQEALANTADEDEPAEHATDIAPWPPDADVAWAPPETRSYSPPWPPRGTPVLLRTAQVAELEGAVHVSGHAHTILRMAHLSSPEDFGPWLEATPVLWSLRYKPLVGDALLDELARSHNSVSAANMGLLARCFGWDDVHDGVDPDRLASIQSRGHRRWAAETGNAAELSALLEQEGSLRLGRITVSRCLRYLSQPWNLRRSLWQAQLPEHISEVNALLDAIESGGSEQLPEAWHPQQILFWRSLADVSRPRRWRWQVNALRGVLLGVCSLLFFGGIAGVSLVQGKAGEASIFVQMGALLGLLLAVMGVLWVPVRWALRQLTLDLTHRRAGLLLALPAPLMAIGSLVLVHGLGHRMEGTLLIFMALPLATARLWRRVGARMRFGVRHGVFMVLAMLIAEAGIVLTLLQWGAEFVHRARRHAPIDRLPPASGNTA
>LS483406.1|SQG69534.1|4576636_4577884_+|transmembrane-chaperone-heat-shock-protein
MNRALDALGLDASADERAIKRAYAQRLRAARPDEDPVAFQTLHEAYQEALRWIRNRAQWQEESSAEALATTPANNSPPEPLAPYDSHSPMDHMPELHHPCTLDTDMPDDVVEPSLNLPRFARLLINTAGDTDPASFEHWLAGRPELWSLADRPRIGDVVLQQLLHQGGPLCESNFDLLGRYFCWDEIRADIDPYRVRARRSQLHRHWQLQPRNHAALTTALDRPQDRVSPHEARARVERLTRPWHWLQSLLSSCVPGRAGTMRRTMQHLGVHTVRDTLAPLDADQVAFWLAISQPRRFNIPKLQVAIVRCLLGALIVLAVLAVLALLGDAVRPRALNTFGMKRAAIHASVVIVSGALMLAHFVGWTPSRTASAPTPAEPPSPLDGQGVLTHGPRPRRPAPSFAVVSQLDPGTGNG
>LS483406.1|SQG69535.1|4577895_4581753_-|Family-of-uncharacterised-function-(DUF490)
MSTPAPTPNTPPPRVRFYRRRRFWAWSGVGVIGLVLLALLAVYWLLQTVAGRDVLLAQVVARLPVGASFTWDKVDGPVAGPLTLYNVDFRYDDIHFHAERAHLEPDLRPLLGRKLLLDKLELTNATLNLAKSDEPFKLPSWPDSLPQIEMPLAIQADAIAIDGFRISQANEPVIDISRVRGGIEIANGEFQAHKLVVDSDMGNFTAQGRYIPAKDYDTDVTVTAVLPAPRGRTAATVGLVARGDLAHMEVAVAGRAPKPLHAMLVFDGRTDPSWSASIRSDELDLALLSPALASSAIAPLALDFTAAGKGGNANLRGKVKQGDQELELAPSVVSLQDQVLKVSPLLVKGLGGEARLEGTADFSQEDQQKLNFSVVAHDLTYVPAPDPNTAGSAPVPVTLKEARFGLAGTLKAWAAIGRADVEREKQKAQLQFDVRGNDQAASIHQLQAQTPGGQLQVEGQVAWAPQLDWDAKATLKDFDPGYFVPGWNGRLSGNLASKGRQLPPPANAPPGTAGTLEATVDLPSLKGILRQRNLDAQGKFALQGAQGQGDLKLSLGSSRVTASGKVGDRLDIDARFEPLQLSDLLPGADGGLRGQVQVKGPRDAPDITADLVGNNLNWDGYGAESVSIKGHLPWRGDSGTLAVQGQQVNAGMLLERLNVDAQGSVSNLRLAAQTRNEMGAIELQGSVRQQGAQWRGELASLRIAPVKGDAWSLRAPAAFAINGSTYTLSEACLAAASSGALCAQANWPREGLVVRSDALPLALVQPWLPPQSGRRIYLRGDVSLDAQIRPRGNAWEGHVEVRSKEGGVRLGENRNTVGDTTRGELVRYDQFSLKLDMTPASIKGYLGMGFQGNGFVDARMQTGWEASAPLNGELYLNMSRLYWLELFSPDIVRPTGLIEGHVSLRGTRGQPSLGGDAQLSNFKGEFPALGLTFDQGKGSFVAQPDGSAKITAQANSGQGTLYVDGGLSWFGDAQPLQLKIHGENVLLSNTSELRIVANPNLDFTLAKAAMELRGTVHVPEADIDLERLDRGTSVSEDVVVLDPADPEESRTSPLDMDLTVSLGDKVKMTGFGLKGALTGKMQVWAKPGREMTANGGLEVSGRYKAYGQDLTITRGNLTWNYNAVSDPRINIRAERRIGDVTAGIDVTGRAQQPRADVWSEPAMSQSEALAYLVLGRSLTGASSDQAQQVNAASAALSAGSGLLASQLGAKLGLDDAGVSQSRALGGSVIGVGKYISPKLYVGYGVSLVGAGSVITLKYLLRRGFDVEVESSTVENRGSINWRREK
>LS483406.1|SQG69536.1|4581749_4583534_-|outer-membrane-protein
MQPKKYALPLMVLSLAATSVANARGTIDKVDIKGLDKGDDAAIIENIQESLSLYDTIGKEQGESRLEYLLSQAERQTRQALEPFGYYNPVIKVEAPREDEHVRVLIHVDKGTPVTVRREHIDITGPAMYDQYLQDDLAAFKPRKGQRFEHTQYEASKITITRRLAERGYFDADYTQRQVQITRADNAADIDLTWDSGRRYNMGPVRFEQDYFVDKLFDPLVYWEQGSYFHEGKLDRLRESLTKLDYFSVIDIQPRPDQADANGEVPVDVKLTRAKRTIYTAGLSYGSESGPGVRGGIERRFLNNRGHKMNTQLDYAQKRKSLVTSYRIPAFNWLDGWYTFAASAYDEQTDYIDLRNFKLIASRSGEINEHWTAIASINALRERWRYASGTEFTDAVYNTSTLVYPQMVADYVNVDDEMFPRKGISGTATMRAGVEGAGSDTSFVQANAVLRWYIPVGESNRLILRGEGGTTWTSDLVAMPPSLRYFAGGDRSIRGYAYREVGPRTPKPDKYALGAKNLVIGSAEYEHYFNGGPWGAAVFVDTGSAFDNTIDLHTGVGFGVRWKSPVGPVRVDIAHGLNNPDSQFQLYLNIGADL
>LS483406.1|SQG69537.1|4583802_4585878_-|glycyl-tRNA-synthetase-subunit-beta
MSQLSPLLIELGTEELPVKALPGLAQAFFDGVVEGLRKRGVALELGDARPLSTPRRLAVLLPGVGLEQPEQHSEVLGPYLNIALDAEGQPTKALQGFAAKAGIDWTALEKTTDNKGERFVHRAVTPGASTASLLPEILREAIAAMPIPKPMRWGDHAWGFARPVHWLVLLHGANVVEAELFGLQAGRVSRGHRFHHDQAVSLAQPQDYVEALRAAFVLVDPSERRARIVAEVEAAAAKAGGNARITDDNLEQVVNLVEWPSAVLCSFEPAFLAVPQEALIETMEINQKFFPVLDAAGTLTEKFIGIANIESKNVAEVAKGYERVIRPRFADAKFFFDEDLKQGLVSMGEGLKTVTYQAKLGSVADKVARVAALAEVIAPQVGADAAQARRAAELAKNDLQSRMVNEFPELQGIAGRHYAVAGGESAEVALAIDEAYQPRFGGDDIALSPLGKVLAIAERVDTLAGGFAAGLKPTGNKDPFALRRNALGLARTIIESGFELDLRALLASANAGLAARNVQADVGELYDFILDRLKGYYGDKNVPATHFNAVAELKPVSLYDFDRRLDAIGTFAALPEAEALAAANKRIRNILRKAEGDIPAQIDPALLQEDAERALAEAVTAAIDDTGASLHQKDYVAVLARLARLRPQVDAFFDGVMVNAEDPALRGNRLALLTMLGERLGKVAAIEHLSS
>LS483406.1|SQG69538.1|4585965_4586877_-|glycyl-tRNA-synthetase-subunit-alpha
MSATPTVPITFQGLIQTLNQFWAQQGCVLIQPLDLEVGAGTFHPATFLRAIGPEGWNAAYVQPSRRPTDGRYGENPNRLQRYYQYQVAMKPAPDNIQQLYLDSLKALGIDPLVHDLRFVEDNWESPTLGAWGLGWEVWLNGMEVTQFTYFQQAGGLECRPVLGEITYGLERLCMYLQNCDNVYDLIWTYGPDGQPVTYGDVYHQNEVEQSTYNFEYADVEEMFHRFDACEREAQKLVEVNLPLPAYEQVMKASHTFNLLDARRAISVTERQRYILRVRALAQAVARAYYEQREKLGFPGAKKA
>LS483406.1|SQG69539.1|4586960_4588796_+|type-II-secretory-pathway,-ATPase-PulE/Tfp-pilus-assembly-pathway,-ATPase-PilB
MEHRLPAGTPGEADGAPLPWGRLHFEQIAAALTADGLVAEQDRERMRFSAQGARNASEVHPLVLLSNLKLAATSGGELTLERLTEWLAQRTGSRYLRIDPTRVDVAAVTALVSHAYARRHRFLPLAVDAERVLVATSEPLVQEWRRDLQHLTRRRIELAVVNPLDLHRYTMEFYGVTRSVRGARGDVRGEASTTLPSFEQLVELGRTGDVNADDQHIVHIVDWLLQYAYEQRASDIHLEPRREMGRMRFRIDGVLHKVFEVPPAVMTAVVSRIKVLGRMDLAERRRPQDGRIKTRSPGGREVEMRLSTMPTAFGEKCVMRIFDPDAAFKSIDQLGFSPQEAAGWNALVERPHGIVLVTGPTGSGKTTTLYSTLKRLATPDVNVCTVEDPIEMIAPEFNQMQVQANIDLDFASGVRTLLRQDPDIIMIGEIRDLETAQMAVQASLTGHLVLSTLHTNDAPSAVTRLLDLGVPHYLLASTLNGILAQRLVRTLCPHCKQPHSLGAADWAVLADSHAAYSDAATPCRPVGCLECRRTGFLGRIGLYELLPLGSRLRGQIRADMDLAGFTRAARAEGLRTLRQAGLEKVAQGLTTIEEVLSVLPPPDEPSPVPDP
>LS483406.1|SQG69540.1|4588767_4589514_+|GMP-synthase
MNPAPFLILETGRPVPSLRRYGRFPHWIRVAAGLEEHETVVVDVEHGGALPDPHAFAGVLVTGSAAFVTDHADWSERSAAWLRQTAHDDLPVFGICYGHQLLAHALGGEVAYNPAGRESGTIELELQPQAAQDPLFQGLPQHFAAHATHLQTVLRAPDGAEVLARSPLDGCHAFRWGRQAWGVQFHPEFATHHMRGYVRARADCIGRHGGCARSIERAVSAAPLARQLLRRFVRQARLSSAQPVAKQG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483406_5	5.1\|3922687\|26\|LS483406\|CRISPRCasFinder	3922687-3922712	26	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	323708-323733	3	0.885
LS483406_5	5.1\|3922687\|26\|LS483406\|CRISPRCasFinder	3922687-3922712	26	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	191227-191252	5	0.808
LS483406_5	5.1\|3922687\|26\|LS483406\|CRISPRCasFinder	3922687-3922712	26	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	855999-856024	5	0.808
LS483406_3	3.1\|3731952\|31\|LS483406\|CRISPRCasFinder	3731952-3731982	31	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	279739-279769	9	0.71
LS483406_3	3.1\|3731952\|31\|LS483406\|CRISPRCasFinder	3731952-3731982	31	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2303553-2303583	10	0.677

1. spacer 5.1|3922687|26|LS483406|CRISPRCasFinder matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 3, identity: 0.885

agcg-gatcatggcgtcgattggccct	CRISPR spacer
-gcgcgatcatggcgtcgatcggcccg	Protospacer
 *** ***************.*****

2. spacer 5.1|3922687|26|LS483406|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.808

agcggatcatggcgtcgattggccct	CRISPR spacer
ggcggatcctggcgccgattggccgc	Protospacer
.******* *****.********* .

3. spacer 5.1|3922687|26|LS483406|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 5, identity: 0.808

agcggatcatggcgtcgattggccct	CRISPR spacer
ggcggatcctggcgccgattggccgc	Protospacer
.******* *****.********* .

4. spacer 3.1|3731952|31|LS483406|CRISPRCasFinder matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.71

cggtagatccgcgccgtgcgtggatgggaaa	CRISPR spacer
gagcagagccgcgccgcgcgtggatggttgg	Protospacer
 .*.*** ********.**********  ..

5. spacer 3.1|3731952|31|LS483406|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.677

cggtagatccgcgccgtgcgtggatgggaaa	CRISPR spacer
tcagccatccgcgccgggcgcggatgggatt	Protospacer
. .   ********** ***.********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

575231 : 582684

Escherichia_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG65934.1\|575231_576290_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.8e-83	47.6
SQG65935.1\|576304_577192_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	3.5e-95	58.2
SQG65936.1\|577188_577746_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.5e-45	50.0
SQG65937.1\|577742_578639_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	2.2e-28	37.1
SQG65938.1\|578732_580136_-	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	1.6e-46	29.1
SQG65939.1\|580147_581494_-	phosphoglucomutase	A0A127AWJ1	Bacillus_phage	2.2e-29	26.6
SQG65940.1\|581622_582684_+	NAD-dependent epimerase/dehydratase	A0A2K9KZK0	Tupanvirus	2.2e-88	47.5

DBSCAN-SWA_2

992739 : 1058129

Escherichia_phage(22.73%)

integrase,plate,tail,transposase

attL 1033342:1033359|attR 1064671:1064688

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG66296.1\|992739_993945_-\|integrase	integrase family protein	A0A077KET4	Ralstonia_phage	1.1e-56	37.4
SQG66297.1\|994561_997576_-	autotransporter	NA	NA	NA	NA
SQG66298.1\|997866_998271_+	Uncharacterised protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	7.7e-18	36.6
SQG66299.1\|998349_999375_-	ADP-heptose--lipooligosaccharide heptosyltransferase II	NA	NA	NA	NA
SQG66300.1\|999389_1000166_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA
SQG66301.1\|1000165_1000933_+	beta-lactamase domain-containing protein	NA	NA	NA	NA
SQG66302.1\|1000929_1001319_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG66303.1\|1001794_1002112_+	quaternary ammonium compound-resistance protein sugE	NA	NA	NA	NA
SQG66304.1\|1002470_1011104_+	glycine-rich autotransporter protein	NA	NA	NA	NA
SQG66305.1\|1011052_1013362_+	glycine-rich autotransporter protein	NA	NA	NA	NA
SQG66306.1\|1013418_1014075_-	acetyltransferase	NA	NA	NA	NA
SQG66307.1\|1014201_1014612_+	Protein of uncharacterised function (DUF3592)	NA	NA	NA	NA
SQG66308.1\|1015191_1017243_+	DNA polymerase III subunits gamma and tau	A0A1U9WR94	Streptococcus_virus	2.1e-47	41.4
SQG66309.1\|1017249_1017570_+	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQG66310.1\|1017681_1018281_+	Recombination protein RecR	NA	NA	NA	NA
SQG66311.1\|1018348_1018708_+	bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA
SQG66312.1\|1018785_1019313_-	Starvation lipoprotein Slp	NA	NA	NA	NA
SQG66313.1\|1019309_1021259_-	transmembrane transglutaminase	NA	NA	NA	NA
SQG66314.1\|1021251_1022196_-	transmembrane protein	NA	NA	NA	NA
SQG66315.1\|1022198_1023152_-	ATPase	NA	NA	NA	NA
SQG66316.1\|1023194_1025036_+	transmembrane protein	NA	NA	NA	NA
SQG66317.1\|1025209_1026154_+\|transposase	transposase	NA	NA	NA	NA
SQG66318.1\|1026294_1026864_-	Maf-like protein	NA	NA	NA	NA
SQG66319.1\|1027016_1027487_+	characterised ACR protein	NA	NA	NA	NA
SQG66320.1\|1027594_1027789_+	50S ribosomal protein L32	NA	NA	NA	NA
SQG66321.1\|1027880_1028858_+	3-oxoacyl-[acyl-carrier-protein] synthase,KASIII	NA	NA	NA	NA
SQG66322.1\|1028936_1029719_+	Mn2-dependent serine/threonine protein kinase	NA	NA	NA	NA
SQG66323.1\|1029975_1030920_+	malonyl CoA-ACP transacylase	NA	NA	NA	NA
SQG66324.1\|1031002_1031746_+	3-oxoacyl-ACP reductase	Q06VL0	Trichoplusia_ni_ascovirus	4.7e-13	32.3
SQG66325.1\|1031898_1032138_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.6e-10	44.6
SQG66326.1\|1032281_1033544_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA
1033342:1033359	attL	NA	NA	NA	NA
SQG66327.1\|1033758_1035123_+	Para-aminobenzoate synthase, aminase component	NA	NA	NA	NA
SQG66328.1\|1035320_1036382_+	protein YceG like	NA	NA	NA	NA
SQG66329.1\|1036378_1037044_+	thymidylate kinase	W8D0J5	Erwinia_phage	5.5e-21	34.9
SQG66330.1\|1037040_1037997_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
SQG66331.1\|1037993_1038347_+	type IV pilus assembly protein PilZ	NA	NA	NA	NA
SQG66332.1\|1038766_1039147_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
SQG66333.1\|1039177_1040251_-	late control D family protein	D5LGY1	Escherichia_phage	2.5e-95	51.9
SQG66334.1\|1040241_1040457_-\|tail	phage tail protein	A0A193GYC8	Enterobacter_phage	1.6e-14	54.3
SQG66335.1\|1040440_1040908_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	1.1e-15	35.2
SQG66336.1\|1040910_1043373_-\|tail	bacteriophage tail protein	K4ICR4	Acidithiobacillus_phage	2.7e-12	26.7
SQG66337.1\|1043493_1043784_-	Uncharacterised protein	A0A088FQX2	Escherichia_phage	5.5e-18	56.4
SQG66338.1\|1043865_1044369_-\|tail	major tail tube protein	A0A193GYM4	Enterobacter_phage	5.4e-45	54.8
SQG66339.1\|1044371_1045574_-\|tail	bacteriophage major tail sheath protein	A0A088FVH5	Escherichia_phage	6.1e-127	54.2
SQG66340.1\|1045680_1046340_-	Uncharacterised protein	V9IQM3	Stenotrophomonas_phage	1.5e-34	40.5
SQG66341.1\|1046341_1048447_-\|tail	phage tail protein	V9IQX0	Stenotrophomonas_phage	3.7e-95	36.4
SQG66342.1\|1048454_1049234_-\|tail	bacteriophage tail protein I	V9IQK7	Stenotrophomonas_phage	7.1e-44	51.1
SQG66343.1\|1049226_1050123_-\|plate	phage baseplate assembly protein	V5YTH6	Pseudomonas_phage	6.4e-81	56.5
SQG66344.1\|1050125_1050464_-\|plate	phage baseplate assembly protein	A0A193GYY8	Enterobacter_phage	7.8e-32	62.2
SQG66345.1\|1050516_1051107_-\|plate	baseplate assembly protein	A0A193GYL5	Enterobacter_phage	3.6e-24	37.7
SQG66346.1\|1051103_1051658_-	phage-like protein	NA	NA	NA	NA
SQG66347.1\|1052010_1052388_-	Uncharacterised protein	NA	NA	NA	NA
SQG66348.1\|1052384_1052870_-	endolysin/phage lysozyme	D5LH07	Escherichia_phage	1.1e-42	58.3
SQG66349.1\|1052866_1053217_-	Uncharacterised protein	NA	NA	NA	NA
SQG66350.1\|1053213_1053663_-	Mor transcription activator family	NA	NA	NA	NA
SQG66351.1\|1053997_1054381_-	Uncharacterised protein	NA	NA	NA	NA
SQG66352.1\|1054534_1055173_-	phage-like protein	A0A2H4J8A1	uncultured_Caudovirales_phage	1.0e-19	37.6
SQG66353.1\|1055214_1055442_-	Uncharacterised protein	NA	NA	NA	NA
SQG66354.1\|1055399_1055792_-	regulatory protein	NA	NA	NA	NA
SQG66355.1\|1055792_1058129_-\|integrase	phage integrase	D5LH15	Escherichia_phage	7.4e-137	43.4
1064671:1064688	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1654243 : 1665021

Ralstonia_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG66901.1\|1654243_1655146_-	phage recombination protein Bet	U6C6J0	Ralstonia_phage	6.2e-68	69.7
SQG66902.1\|1655154_1656093_-	protein TolA	A0A077KCC0	Edwardsiella_phage	2.5e-19	50.9
SQG66903.1\|1656173_1656341_-	Uncharacterised protein	NA	NA	NA	NA
SQG66904.1\|1656337_1656568_-	Uncharacterised protein	NA	NA	NA	NA
SQG66905.1\|1656548_1656710_-	Uncharacterised protein	NA	NA	NA	NA
SQG66906.1\|1656696_1656963_-	Uncharacterised protein	NA	NA	NA	NA
SQG66907.1\|1656959_1657076_-	Uncharacterised protein	NA	NA	NA	NA
SQG66908.1\|1657072_1657378_-	Uncharacterised protein	NA	NA	NA	NA
SQG66909.1\|1657554_1658022_-	Uncharacterised protein	NA	NA	NA	NA
SQG66910.1\|1657997_1658693_-	Uncharacterized HTH-type transcriptional regulator HI_1476	C8CLH0	Xylella_phage	7.8e-10	27.0
SQG66911.1\|1658775_1659006_+	CI repressor	W6MWX8	Pseudomonas_phage	7.2e-05	57.1
SQG66912.1\|1658995_1659409_+	Uncharacterised protein	NA	NA	NA	NA
SQG66913.1\|1659392_1659587_-	Uncharacterised protein	NA	NA	NA	NA
SQG66914.1\|1659920_1660427_+	Uncharacterised protein	NA	NA	NA	NA
SQG66915.1\|1660445_1661180_+	Uncharacterised protein	V5URT9	Shigella_phage	3.3e-11	35.1
SQG66916.1\|1661176_1662448_+	DnaB domain-containing protein helicase domain-containing protein	A0A2R3UA46	Siphoviridae_environmental_samples	4.2e-163	67.1
SQG66917.1\|1662447_1662627_+	Uncharacterised protein	NA	NA	NA	NA
SQG66918.1\|1662623_1662779_+	Uncharacterised protein	NA	NA	NA	NA
SQG66919.1\|1662775_1663252_+	NinB family protein	A0A1R3Y605	Salmonella_virus	2.7e-14	36.3
SQG66920.1\|1663248_1663590_+	Uncharacterised protein	NA	NA	NA	NA
SQG66921.1\|1663586_1663937_+	Uncharacterised protein	NA	NA	NA	NA
SQG66922.1\|1663936_1664083_+	Uncharacterised protein	NA	NA	NA	NA
SQG66923.1\|1664285_1664582_+	Uncharacterised protein	NA	NA	NA	NA
SQG66924.1\|1664581_1664722_+	Uncharacterised protein	NA	NA	NA	NA
SQG66925.1\|1664718_1665021_+	Protein of uncharacterised function (DUF1364)	Q8W6N7	Burkholderia_virus	5.8e-10	43.8

DBSCAN-SWA_4

3949343 : 4009001

Synechococcus_phage(18.18%)

protease,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG68975.1\|3949343_3949637_+\|transposase	ISXac3 like transposase	NA	NA	NA	NA
SQG68976.1\|3949891_3950494_+\|transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-31	42.9
SQG68977.1\|3950719_3951625_-	6-phosphogluconate dehydrogenase	A0A1D8KGX1	Synechococcus_phage	1.8e-67	42.9
SQG68978.1\|3951635_3952895_-	Uncharacterised protein	NA	NA	NA	NA
SQG68979.1\|3952891_3953476_-	lipoprotein	NA	NA	NA	NA
SQG68980.1\|3953721_3955899_-\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	1.0e-79	31.3
SQG68981.1\|3956178_3957189_-	lipoate synthase	NA	NA	NA	NA
SQG68982.1\|3957206_3957917_-	Octanoate-[acyl-carrier-protein]-protein-N- octanoyltransferase	NA	NA	NA	NA
SQG68983.1\|3957904_3958183_-	lipoate regulatory protein YbeD	NA	NA	NA	NA
SQG68984.1\|3958534_3959593_+	outer membrane protein	NA	NA	NA	NA
SQG68985.1\|3959941_3961156_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.2e-66	39.8
SQG68986.1\|3961256_3962525_-	lipoprotein A	F5B3X9	Synechococcus_phage	1.1e-17	49.5
SQG68987.1\|3962521_3963643_-	lytic murein transglycosylase B	NA	NA	NA	NA
SQG68988.1\|3964656_3965751_-	Rod shape-determining protein RodA	NA	NA	NA	NA
SQG68989.1\|3965873_3966986_-	Rod shape-determining protein RodA	NA	NA	NA	NA
SQG68990.1\|3966982_3969058_-	penicillin-binding protein 2 (PBP-2)	NA	NA	NA	NA
SQG68991.1\|3969061_3969547_-	Rod shape-determining protein MreD	NA	NA	NA	NA
SQG68992.1\|3969543_3970809_-	rod shape-determining protein MreC	NA	NA	NA	NA
SQG68993.1\|3970930_3971977_-	Rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	2.1e-06	21.2
SQG68994.1\|3972260_3973199_+	sugar kinase	NA	NA	NA	NA
SQG68995.1\|3973781_3974417_-	haloacid dehalogenase	NA	NA	NA	NA
SQG68996.1\|3974404_3975136_-	Uncharacterised protein	NA	NA	NA	NA
SQG68997.1\|3975263_3977192_-	Leukotriene-A(4) hydrolase	NA	NA	NA	NA
SQG68998.1\|3977462_3978224_-	Ubiquinone/menaquinone biosynthesis methyltransferase UbiE	NA	NA	NA	NA
SQG68999.1\|3978304_3978757_+	cytosine deaminase	NA	NA	NA	NA
SQG69000.1\|3978955_3979216_+	Uncharacterised protein	NA	NA	NA	NA
SQG69001.1\|3979291_3979627_+	Uncharacterised protein	NA	NA	NA	NA
SQG69002.1\|3979694_3980117_+	transmembrane protein	A0A1C9EHA1	Mycobacterium_phage	1.3e-07	43.5
SQG69003.1\|3980200_3981586_-	multidrug resistance outer membrane protein	NA	NA	NA	NA
SQG69004.1\|3981693_3984816_-	RND efflux system, inner membrane transporter	NA	NA	NA	NA
SQG69005.1\|3984828_3986013_-	membrane fusion protein of RND family multidrug efflux pump	NA	NA	NA	NA
SQG69006.1\|3986237_3986897_+	TetR family transcriptional regulator	NA	NA	NA	NA
SQG69007.1\|3986942_3987935_+	Oxidoreductase	NA	NA	NA	NA
SQG69008.1\|3988031_3989405_-\|protease	ATP-dependent hsl protease ATP-binding subunit HslU	A0A2H5BJT2	Erwinia_phage	8.7e-45	31.1
SQG69009.1\|3989508_3990060_-\|protease	ATP-dependent protease HslV	NA	NA	NA	NA
SQG69010.1\|3990145_3991042_-	Site-specific tyrosine recombinase	A0A166YH27	Gordonia_phage	2.3e-14	33.3
SQG69011.1\|3991055_3991730_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQG69012.1\|3991726_3992578_-	diaminopimelate epimerase	NA	NA	NA	NA
SQG69013.1\|3992570_3992843_-	exported lipoprotein	NA	NA	NA	NA
SQG69014.1\|3992925_3993351_-	transmembrane protein	NA	NA	NA	NA
SQG69015.1\|3993405_3995517_-	oligopeptidase B	F2Y2Z7	Organic_Lake_phycodnavirus	4.8e-34	26.7
SQG69016.1\|3995728_3996931_+	aspartate transaminase	NA	NA	NA	NA
SQG69017.1\|3997058_3999155_-	prolyl oligopeptidase	NA	NA	NA	NA
SQG69018.1\|3999224_3999551_-	transmembrane protein	NA	NA	NA	NA
SQG69019.1\|3999679_4000282_+	outer membrane lipoprotein	NA	NA	NA	NA
SQG69020.1\|4000352_4001042_-	methionine ABC transporter permease	NA	NA	NA	NA
SQG69021.1\|4001038_4002046_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.8e-30	36.7
SQG69022.1\|4002247_4003144_-	transmembrane transporter protein	NA	NA	NA	NA
SQG69023.1\|4003296_4003779_+	nucleotide-binding protein	NA	NA	NA	NA
SQG69024.1\|4003850_4004447_+	Protein of uncharacterised function (DUF1415)	NA	NA	NA	NA
SQG69025.1\|4004443_4005247_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA
SQG69026.1\|4005332_4007363_-	oligopeptidase A	NA	NA	NA	NA
SQG69027.1\|4007533_4007938_+	Uncharacterised protein	NA	NA	NA	NA
SQG69028.1\|4008056_4009001_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483406

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection