CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483409	Streptococcus gallolyticus strain NCTC13773 genome assembly, chromosome: 1	2 crisprs	DEDDh,cas3,csa3,csm6,WYL,csn2,cas2,cas1,cas9,DinG	0	7	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483409_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483409_1

1470806-1470877

Orphan

Consensus_repeat	Method
CAGTCCAGTGGACTGTTTTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483409_1

>merge|LS483409|1|1470806-1470877|CRISPRCasFinder
CAGTCCAGTGGACTGTTTTTTAACGAGTCTTGAAATTAATGAACGAGTTCAGTCCAGTGGACTGTTTTTTCA

>LS483409|1|1|1470806-1470877|CRISPRCasFinder
CAGTCCAGTGGACTGTTTTTTAA	CGAGTCTTGAAATTAATGAACGAGTT
CAGTCCAGTGGACTGTTTTTTCA

Protein	Signature genes	Signature genes Name	Protein_function
LS483409.1\|SQG79709.1\|1476028_1477618_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|274774
LS483409.1\|SQG79696.1\|1461706_1462363_-\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235036
LS483409.1\|SQG79704.1\|1468999_1469491_-\|membrane-protein	unknown	unknown	gnl\|CDD\|375082
LS483409.1\|SQG79699.1\|1466235_1466595_-\|LSU-ribosomal-protein-L20p	unknown	unknown	gnl\|CDD\|179959
LS483409.1\|SQG79707.1\|1471517_1474490_-\|serotype-determinant,-cell-wall-hydrolase/autolysin	unknown	unknown	gnl\|CDD\|119382
LS483409.1\|SQG79713.1\|1482674_1484435_-\|rhamnan-synthesis-protein-F	unknown	unknown	gnl\|CDD\|377447
LS483409.1\|SQG79708.1\|1474605_1475946_-\|signal-peptide-containing-protein	unknown	unknown	gnl\|CDD\|369899
LS483409.1\|SQG79712.1\|1480209_1482678_-\|serotype-determinant,-transmembrane-phosphoglyceroltransferase	unknown	unknown	gnl\|CDD\|293739
LS483409.1\|SQG79706.1\|1470923_1471505_-\|lipoprotein	unknown	unknown	gnl\|CDD\|236304
LS483409.1\|SQG79702.1\|1467580_1468261_-\|cytidylate-kinase	unknown	unknown	gnl\|CDD\|234579
LS483409.1\|SQG79700.1\|1466646_1466847_-\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
LS483409.1\|SQG79701.1\|1466884_1467415_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
LS483409.1\|SQG79711.1\|1478720_1480190_-\|lipoprotein	unknown	unknown	gnl\|CDD\|372986
LS483409.1\|SQG79697.1\|1462380_1463544_-\|50S-m5C1962-methyltransferase-RlmI	unknown	unknown	gnl\|CDD\|224017
LS483409.1\|SQG79714.1\|1484431_1485778_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|132997
LS483409.1\|SQG79705.1\|1469544_1470762_-\|tripeptide-aminopeptidase	unknown	unknown	gnl\|CDD\|235484
LS483409.1\|SQG79715.1\|1485774_1486974_-\|ABC-2-type-polysaccharide-transport-system-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
LS483409.1\|SQG79710.1\|1477675_1478602_-\|serotype-determinant,-glycosyltransferase	unknown	unknown	gnl\|CDD\|133030
LS483409.1\|SQG79703.1\|1468276_1468771_-\|membrane-protein	unknown	unknown	gnl\|CDD\|212030
LS483409.1\|SQG79698.1\|1463678_1465847_+\|membrane-bound-sulfatase	unknown	unknown	gnl\|CDD\|224287

Protein	Function_ID	Function_description	E-value
LS483409.1\|SQG79709.1\|1476028_1477618_-\|integral-membrane-protein	gnl\|CDD\|274774	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.	8.57377e-14
LS483409.1\|SQG79696.1\|1461706_1462363_-\|3-dehydroquinate-dehydratase	gnl\|CDD\|235036	PRK02412, aroD, type I 3-dehydroquinate dehydratase.	1.54999e-118
LS483409.1\|SQG79704.1\|1468999_1469491_-\|membrane-protein	gnl\|CDD\|375082	pfam17255, DUF5322, Family of unknown function (DUF5322). This is a family of unknown function. The uncharacterized family is mainly found in Bacteria and consists of two putative trans-membrane domains.	3.37892e-59
LS483409.1\|SQG79699.1\|1466235_1466595_-\|LSU-ribosomal-protein-L20p	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	5.85365e-67
LS483409.1\|SQG79707.1\|1471517_1474490_-\|serotype-determinant,-cell-wall-hydrolase/autolysin	gnl\|CDD\|119382	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.	1.80436e-70
LS483409.1\|SQG79713.1\|1482674_1484435_-\|rhamnan-synthesis-protein-F	gnl\|CDD\|377447	pfam05045, RgpF, Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors.	0
LS483409.1\|SQG79708.1\|1474605_1475946_-\|signal-peptide-containing-protein	gnl\|CDD\|369899	pfam08481, GBS_Bsp-like, GBS Bsp-like repeat. This domain is found as a repeat in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology.	3.88263e-24
LS483409.1\|SQG79712.1\|1480209_1482678_-\|serotype-determinant,-transmembrane-phosphoglyceroltransferase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	1.65803e-46
LS483409.1\|SQG79706.1\|1470923_1471505_-\|lipoprotein	gnl\|CDD\|236304	PRK08581, PRK08581, amidase domain-containing protein.	0.000937303
LS483409.1\|SQG79702.1\|1467580_1468261_-\|cytidylate-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	6.86595e-124
LS483409.1\|SQG79700.1\|1466646_1466847_-\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.18923e-18
LS483409.1\|SQG79701.1\|1466884_1467415_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.75289e-87
LS483409.1\|SQG79711.1\|1478720_1480190_-\|lipoprotein	gnl\|CDD\|372986	pfam14264, Glucos_trans_II, Glucosyl transferase GtrII. This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome.	7.96117e-19
LS483409.1\|SQG79697.1\|1462380_1463544_-\|50S-m5C1962-methyltransferase-RlmI	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	8.98928e-134
LS483409.1\|SQG79714.1\|1484431_1485778_-\|glycosyltransferase	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	5.00137e-27
LS483409.1\|SQG79705.1\|1469544_1470762_-\|tripeptide-aminopeptidase	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
LS483409.1\|SQG79715.1\|1485774_1486974_-\|ABC-2-type-polysaccharide-transport-system-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.05857e-120
LS483409.1\|SQG79710.1\|1477675_1478602_-\|serotype-determinant,-glycosyltransferase	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.43945e-84
LS483409.1\|SQG79703.1\|1468276_1468771_-\|membrane-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	5.2444e-05
LS483409.1\|SQG79698.1\|1463678_1465847_+\|membrane-bound-sulfatase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	7.80516e-164

>LS483409.1|SQG79705.1|1469544_1470762_-|tripeptide-aminopeptidase
MSYENLLNRFLSYVKVNTRSNPDSTTTPSTQTQVDFALNVLKPEMEAVGLQDVHYLTNGYLVGTLPANDSTKTRKIGFIAHMDTADFNAEGIKPQVIENYAGGAIEVGQSGYALNPEEFPNLNNYLGQTLVTTDGTTLLGSDDKSGIAEIMTAVEYLVAHPEIKHGEIRVGFGPDEEIGVGADKFDVDDFNVDFAYTVDGGPLGEIQYETFSAAALEVDFMGRNVHPGTAKNQMINALQLAIDFHNQLPENERPENTEGYEGFFHLHGMEGTVEKAHSSYIIRDFEDDSFENRKKLVQEIADKMNAELGKESVIVNLHDQYYNMKKIIEKDMTPVELAKEVMEDLEIKPVIEPIRGGTDGSKISFMGIPTPNLFAGGENMHGRFEFVSLQTMEKAVDVIIGIVQK
>LS483409.1|SQG79704.1|1468999_1469491_-|membrane-protein
MIKIFGKMRYHWQPELSWSIIYWSIAVAPMFIGLSLLFERTKIPSQFFILFAIFIVLVGLGFHRYFVIEENGRLRIVSLNPFKKSSVAIAQIKKIEVNKSGIIIKIKNQPDRIFYMRKWPKKYFLDALAVHPDFLGEVELIDNFIKLDYFEAYKANKKAPTKS
>LS483409.1|SQG79703.1|1468276_1468771_-|membrane-protein
MAKQPWEEKVVDDNEIKISRKTKGSAISTPLLTALLSIFFVIVVAILFVVFYTSNRGSDKASETSNFYGASSSSVVSSSSEASSSETTAETTTDESSTDASSDDTTESSSSTGSGDTITVLSGEGAASIAARAGISVETLYELNPDHMTSGYWYANPGDEVYIN
>LS483409.1|SQG79702.1|1467580_1468261_-|cytidylate-kinase
MKSIRIAIDGPASSGKSTVAKIIAKNLGYTYLDTGAMYRSATYLALQNGLTENNVQEILEALSKHSISFGRAEDGSQTVFVGDKDVTLAIRQNDVTNNVSWVAAIPEVREELVEQQRRIAKNGAIIMDGRDIGTVVLPDAELKIFLIASVEERAERRFKENQEKGIETDFETLKREIAERDYKDSHRKVSPLKAADDAITFDTTGVDIDGVVKFIQEKAEKIIDMD
>LS483409.1|SQG79701.1|1466884_1467415_-|translation-initiation-factor-IF-3
MKIIAKKDLFINDEIRVREVRLVGLDGEQLGIKPLSEAQAIADDANVDLVLIQPQATPPVAKIMDYGKFKFEYQKKRKEQRKKQSVVTVKEVRLSPVIDKGDFETKLRNGRKFLEKGNKVKVSIRFRGRMITHKEIGAKVLAEFAERTQDIAIIEQRAKMDGRQMFMQLAPIPDKK
>LS483409.1|SQG79700.1|1466646_1466847_-|50S-ribosomal-protein-L35
MPKQKTHRASAKRFKRTGSGGLKRFRAFTSHRFHGKTKKQRRHLRKAAMVHSGDFKRIKAMLSGLK
>LS483409.1|SQG79699.1|1466235_1466595_-|LSU-ribosomal-protein-L20p
MARVKGGVVSRKRRKRVLKLAKGYYGAKHILFRTAKEQVMNSYYYAYRDRRQKKRDFRKLWITRINAAARMNGLSYSQLMHGLKLAEIEVNRKMLADLAVNDAAAFTALADAAKAKLGK
>LS483409.1|SQG79698.1|1463678_1465847_+|membrane-bound-sulfatase
MKKLKQVISHVLNTRLGFILTLLFMYWLKTMWAYHVDFSLDLGNLYQVFLSIINPIPLGLLLLGLSLYIKRTRVFYAVSWIIYTILNILLIANAIYFREFSDFITVSAMLASSKVSAGLGDSALNLLRVWDIVYIFDYIILIILFATKKIKTDKRPFNKRASFAITALSALLFSINLFMAEIDRPELLTRGFSNVYVVRALGLPSFTVYSANQTYQAEKERSEATADDLTEVKEYVSEHYAAPNSKYYGIAQGKNVIVIHLESFQQFLIDYKLEVDGQSYEVTPFLNSLYHSNSTISFSNFFNQVKAGKTSDAETLMETSLFGLSSGSYMVNYGGDNTAFAAPSILAQTGGYTSAVFHGNVGSFWNRNNTYKQWGYDYFFDSSYFQEQTDENSFQYGLNDKYMFADSIKYLEHLQQPFYTKFITVSNHYPYTSLAGESDEEGFPLAQTDDETINGYFATANYLDSAIEAFFNYLKESGLYDNSIIVLYGDHYGISNSRNTSLAPLLGKDSETWTEYDNAMLQRVPFMIHIPGYTDGFISDTYGGEVDALPTLLHLLGVDTSNYVQLGQDLLSEDNDQTVALRTAGYYITPTYTSYSGHLYYTATGEEITNPDESTTAATKEIRNAVAKQLSVSDEVQTGDLLRFDTDTGLETVDSSSISYSDSLKSLKSIEKKLGDESTSLYSENGNQSTVDLFKAPSYMQLHSSSSSSSSSSSSSSSSDGS
>LS483409.1|SQG79697.1|1462380_1463544_-|50S-m5C1962-methyltransferase-RlmI
MNKLYVDSFVEKKIKRGIQLLDGRDFHQLDFDNQLVAVYNHSHQFLGTAYLSQQNKGIGWFLGSRKIELTESYFVDLFTKAKKQRQNFENSDLTTAYRLFNQDGDNFGGVTIDRYADFVVFSWYNTFIYQYRDVIINAFQKVYPAIKGDYEKIRFKGLDYESAHIYGQEAPASFTILENGVKYSVFMNDGLMTGIFLDQHDVRDTLINELGLGKRVLNMFSYTAAFSVAAAMGGAIETTSVDLAKRSRELSQAHFEANGLDLSNHHFVVMDVFEYFKYAKRKQLTFDLIVIDPPSFARNKKQTFSVAKDYHRLISQALEVLSEDGIIIASTNAANLTVAQFKKQLEKGFASVKHDYVRLQQLPSDFTVNKADVNSNYLKVFTIKVKK
>LS483409.1|SQG79696.1|1461706_1462363_-|3-dehydroquinate-dehydratase
MPKNLEEAQSIDISKFDEVDIIEWRADFLDKDDIMTVAPAIFEKFSGREIIFTIRTDKEGGNINLSDGDYVELLKNINAIYHPDYVDFEYFSHKEAFQQMLDFPNLVLSYHNFDETPENLMESFSELTALAPRVVKVAVMPQSEQDVLDLMNYTRGFKTLNPEQEYATMSMGKLGRVSRFAVDVFGSSWSFASLEQASAPGQVALADMKHIREVLDAD
>LS483409.1|SQG79706.1|1470923_1471505_-|lipoprotein
MKKKLRCYLTLLLSLGLLAACSTHSQNNTNQSSSSTTVSSSVKKSTNSSETSTSSTGSSESEEASSTESSPSTEVTLAPINTGAILKADYSTMAGTWQNASGETLTFNDAGLATEGLTADFLDIDQNGILLLDVQTGSKTNVTLYIVPANTSFSSDYLNGQSDNSEVSKDRIISSADISSGDIANKAYYHVSE
>LS483409.1|SQG79707.1|1471517_1474490_-|serotype-determinant,-cell-wall-hydrolase/autolysin
MHLKKNVLRSCLLSPVIIGAFLSSSLVLADENTTISTTAENVQTEQVSSTTENTVADTSVSEAEQATESSSEQPLVEDSDNETTVSENNSSIDSATTDTTDAIVVANESALSETSDNLGANTKAEEVSEDSQTAETSTTTTGAVDEEATEDDNETETLTVNTDTVSEVNTASLTTSLQSTAKKVTSTQTQKSLVEASVSGNTLSVQYNGTITAGESLKFAVWSDNNDQDDLVWYDADASGAAYIDLSNHKDYGIYNIHTYSFKNGQTTGLNAMTVTVARPEVTTNITQTSNGNFTITISNVPDSITSILVPVWSDNNGQDDIKWYSAKQTGTGTYQATVSVANHNSDNGHYSAHIYGQSSITGGLIGLAVTSGFDNVDTRPNATVSVVNYAEDKTTFDVVVTGSSATKTIKSVAIAVWSEDKGQDDLIWYTPTITNNSARVTIDIANHSNTSDIYNVHVYTDYADGTRVGQVLGAYQITKPTPKNDVTATLTSDGIALTLDSNTVTDYSKVKFAVWSDDEGQDDLVWYDASSAGTALASYENHSGYGTYHIHTYSFETGKAVGLNATDIVIEKPNVQTTITKVDDNTYKVTVTNVPIYIKSVSLPVWSTVNGQDDIDWLTATKEDSSTYTGTISLKDHHYDSGDYNVHVYGQSKLGNQFIGLAVTKGFTVTETSATAPTITVSNYDKDSGVLTVTVSETSTSKQLKFIRVAAWSESDQSNLYWYTTSDITNGTASLTVDEKYHDYIKGDYTVHVYVDFSDGTTSGYNLGSYTFNADQPVQQESSYFIDISSHNGVISVSEFLSLKSQGITGVVVKLTEGTSYTNPYASSQISNAQAAGLKVSAYHYSHYETAAEAKAEAQYFVSVAKSLGLSSSTVMVNDMESSEMLNGDINANTQAWKEEMTRLGYSDLVYYTMASWLDIKGGKVSTSTFGMSNFWVAHYVYGYTYLDQETAKSLAYYSSAAAWQYTSVSPKLSHALDENIDYTGRFTW
>LS483409.1|SQG79708.1|1474605_1475946_-|signal-peptide-containing-protein
MSKLKTALLSTVVLGATCLSHPIFADQQGNAIVSKTNFDSASKTFEVTAQQSDNGKAIKGINVAIWSEENGQDDLKWYTNSNVSGGQVKVQFNLANHGNRAGNYITHVYTNYTDGSCSGVALENTKINPKAPQLSVKNGAIQMTTDIYAPSNGQIKYAVWSEENDQDDLRWYEDSGKGITQADLKNHSGYGRYFVHTYLSQGGKMIGINGQDIVINKQEVSYQINKVNDTTYDVLVTNVPEYITSIAVPTWSNANGQDDIKWYTTTKVDNGTYKAKINLANHGYASGDYSVHIYGQNAITNNFEGLKGTSGFRADNVPNQNTTPTPRITTYINETNTYPVGQCTWAVKSLAPWIPNWLGNAGGWATNAKAKGFRTGSTPRVGSIAVWPNDGGGYGHVAYVTDVASNTRIQVKESNYAGNQYIANFRGWFNPLDSFWGGSVTYIYPD
>LS483409.1|SQG79709.1|1476028_1477618_-|integral-membrane-protein
MLKKCHDVIINLLHAWSLLLFTLITLISLFYRTFIPRYSELAEIKQNRLFLLILFLALGIFYFVIANLRKSSAKRIFFLGVLAYTIFAIYLFLSVSGILRNDAVAVYDAARGLNNGDFSYLEINSYLYRFPHQLGLVTYERIILALTGAKNAKIFFLLNFIMIIAINYLNWRITKKLFDNEEISKISIVISFIFLPQFFSILFVYGLVPGLFFSMIAIYCLIAYFEKRQLRFLAGLIIALICATVIRNNYIILVVTISIILILDAINHKAFPSFLGIIVLFTMLSAANTSINSHYKNLSNGSDISGTPHIAWIAMGLDDNSKSPRLPGWYDESIDNVYVENKGDFEKIKILSQYKVKERLDYLTGHPKYAWDFFATKVLSTWTEGLFQSIWSGPAPALNQGVRTFLWKSVYNGKFFYKFFSLFSTAILFLIYFGSLVFLFYLVGSQKVVNSLIFYPYIYFSGGFLFHLIWETKSQYAYPYIVLLFPVAAFGLFKFPQLKKTVLWKRIVQKLRLVLFSLSDTIENAKLNK
>LS483409.1|SQG79710.1|1477675_1478602_-|serotype-determinant,-glycosyltransferase
MKKLSIVVPCYNEQETIYPFLEETQKVEQKLKNHLVFDYIFVNDGSKDETLNVLRDVASRFPNVHYLSFSRNFGKEAGLLAGLEAADGDLITVMDADLQDPPELLINMYQKILEGYDVVGTRRADRKGEPVIRSFFSKMFYKIINAVSDTEMVDGARDFRLMTRQVVDSILELGEVNRFSKGIFSWVGYDVTYIAYENRERVAGETSWNFWSLLKYSMEGFINFSEAPLNLSLWAGAVSFLASILGILFIIVRKLTIGGSVTGWASLVCIILFIGGIQLLALGIIGKYISKIFLETKKRPVYIVKEKG
>LS483409.1|SQG79711.1|1478720_1480190_-|lipoprotein
MKNKVNDFVNLNKQKIFIIFVLYCVSACSIGVVNYPYIDDIARRIEGVGNFAAHYSRYLSEFASYIVQGSHHLTDTGLTTFVVSAIILTLTSVVVLYVMFDGEQISWVSAMGSVFIGINPWFLEPISFRFDAPYICLSVLVSVIPFLFFYSKKRNYFLLSIIGIFLMCNSYQGSSGIYIIMLLTLLYRDFLKGVEISELLKKLLISALAYVISMGVYLLETKLNPELALRGDTTSIAPLKDMPAAVFNNLRVYFITLKSQSTNAWLYLAIVLFIMFFVYMTYSSKINKLISSIFGIIYIALGSILSFGVYMFFSTPLADDRPRYEYGFAYFIAIIMILLGSYSSNKVIDYVKGLVVVLLVYYSVSFAFIYASALDNQKEAFEDSAVMLAEDLNDYVTADNQTVYISSMFKDSPAYLNTLKTYPILDDLIPSNSNLYWPNLLWFNTLTNLNVNLVGFDFNTIDMNTLELLESNKLWDIYQLNGEIYVYTK
>LS483409.1|SQG79712.1|1480209_1482678_-|serotype-determinant,-transmembrane-phosphoglyceroltransferase
MMKKFLKSFDWVNLLRIVLLIIFLFYINFYLVNSYVLKGATSDLSLGFQSSLHFSLIAYILSIVGISFYLVKDLSKTFFIKLVSGYFIYQIVSYFILVTRNLNNEKFKVWDLIKNHFFQPNFLVTLLIIIGISGVLYFLIQKNRYLAFIEDYLQDYDSKNTILFGFLASFVVNDRQMLKIFKELVSSYLSDNDYVHFIIHLSSNLALTLMVMGVVSYFVINAYQAIVTNSPTPSLMITVSFALATIFNYTLQLGVRSDETLLDKFIFPGATAYQIIALTCLFLIIYLVFNRFLSATFLIIVTGVIISVVNSIKEGLRSEPLLITDFVWLKEISLLTSFVDKSVIIYIVLGVIATLGVYILLRKRILPGKIFNIKRLRFSFLGALIGLGVFNFIVFRNETDSKIIDNIPVVSKVNNWVDINWMGFSTNASYKSLTYVWTKQLTKSVMETPDGYSEEKIKELAEKYRNEASIINASRANKIEDQTVIFILSESFSDPSRVPGVTLSENVIPNITQIKDEYTSGLMISDFYGGGTANMEIQALTGLSYSNLSPSVSVMNTEVLPKMSYIPSISDSYTDDEKIAVHLHNGANYSRNIVYKDLGFDTFIALDGTDDKPTQLEYLSAGARDSSTYYAVTSNLSSDTSQFFSVITMQNHIPWEAEEPAEITAYGEGLSDEENESLTSYARLLNITDSATADFLNELSGYDKKITVVFYGDHLPGLYPTSIFSSDPLNQYETDYFIWSNYETEKLSYPSVNSSDFPALVLKQTDSKVSPYYALLTDILEAENQSSDDLEALSMDLQMLQYDLTLGKSYITKVDEKFFETE
>LS483409.1|SQG79713.1|1482674_1484435_-|rhamnan-synthesis-protein-F
MKRLLLYVHFNKYNKISEHVYYQLEHMHPLFSKVIFISNSQLDEGEVDKLRQSQLIDAFIQRENIGYDFAAWHDGMAFEGFENLKAYDSVTAMNDTCFGPLWDMAPVYDKYESDEKVDFWGMTNHRAIDAGHIYIDEHLQSYFMSFKKSIVISEVFQEFWKSVEAYADVQKVIDNYETKYTKRFVDAGFRYASVLNTVPIADNFFHSNFTIHYPHVLLDNHVPFIKIKTFDLTQHLAPYLLKEIEKVSNYPTKLILDHMSDISLPTPPYLLDRKVLKVVEKEYSNTKKVAVHLHTFYVDLLEEFLNQFENFHFDYDLFLTTDTEAKKAEIESILEKNGKIAQVFLTGNRGRDIIPMLKLKEELSSYDYIGHFHTKKSPEYPYWVGDSWRNELYQMLIQSADNILANLENNDNLGLVIADIPSFFRYTKIVDPWNENRFADGMNELWERMNLGRQIDFNNLSTFIMSYGTFIWFKRDTLKPLFDLELTDDEIPSEPIPQHTILHSIERILVYLAWANNYDYAIAKNDIYITPFVDNVVFNIRPNTMPNTYVNFDNIGGIKGALKYIYRGPGSAIKYIIKRMVLKFKS
>LS483409.1|SQG79714.1|1484431_1485778_-|glycosyltransferase
MMDALVSIVVTCYNHESYVKDCLESIFQQTYKNIELLVFNDGSLDDSDTVIKDTLSLSPFENTQYFYHENKGVVLTRNIALEHVSGDYLVFVDSDDTLKKDYIRLLVETAEKENADIVYSALYELNSGEVVLPIKEYDLQEMFIGNFIHASSLIRTSAIGNIKFDEQLNREKLEDYDFYLNLVTSKELKVVPCYATGLNYRMSFDSRSSHQNLKSYYKTYGYIIGKYLTRFPNYVKEALDYHFERLTSLDIEHSIKEEKISIYFSENEAFSDIPDYQNQIQFQDEIEIPVVKGKNYIRIRPSNIPSFYEFFVLKSKEYQTEILPIMSNGLIDENSVVFEDFYPFLDYQFTLSEGDKLVLSYKRYNINDIVAKDYIGKLLAKQKYNRLQTILSYEQKQRQLESELNQKTQEFDDLSKEYNTLLSNYRSITNSIWWKIPTKIINFFRRKK
>LS483409.1|SQG79715.1|1485774_1486974_-|ABC-2-type-polysaccharide-transport-system-ATP-binding-protein
MSDKKIAVKVDHVSKYFKLPTEATQSLRTNLVNYFKGIKGYREQHVLKDIDFEVEEGDFFGIVGRNGSGKSTLLKIISQIYVPEKGKVTVNGKMVSFIELGVGFNPELTGRENVYMNGAMLGFTTEEVDAMYDDIVEFAELEDFMNQKLKNYSSGMQVRLAFSVAIKAQGDVLILDEVLAVGDEAFQRKCNDYFLERKTSGKTTILVTHDMGAVKKYCNKAILIEDGYIKAQGEPDEVANQYSYDNANTEKNDDGKTVEKLVVDNLEVNLLSSGQTTPDKPIEFSISYNVLEDLETYVAFSLTDIDRNIWIYNDNSMEYLSSGKGYKHATYSCLLNNVNNLKLKLEVSIRDKNGKMLAFANSSNTNVILVSRNDLALDDKSGRDSATGLIQRNGTWKFK

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Crispr_ID: LS483409_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483409_2

1661960-1662387

TypeII

II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT

6 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of LS483409_2

>merge|LS483409|2|1661960-1662387|CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAAATCGTTGCGTAAAATGAAAAACAAACAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAAATCGTTGCGTAAAATGAAAAACAAACAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAAATCGTTGCGTAAAATGAAAAACAAACAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAAATCGTTGCGTAAAATGAAAAACAAACAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCTGGGTCGCAAGCACCTCGGGCTTGCTGCGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGACCACCGAGTGGCTGTCCAAGCAGCTCGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>LS483409|2|1|1661960-1662387|CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAATCGTTGCGTAAAATGAAAAACAAACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAATCGTTGCGTAAAATGAAAAACAAACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAATCGTTGCGTAAAATGAAAAACAAACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAATCGTTGCGTAAAATGAAAAACAAACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CTGGGTCGCAAGCACCTCGGGCTTGCTGCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGACCACCGAGTGGCTGTCCAAGCAGCTCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483409.1\|SQG79887.1\|1662910_1663099_-\|HicA-toxin	unknown	unknown	gnl\|CDD\|377942
LS483409.1\|SQG79883.1\|1657981_1658458_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
LS483409.1\|SQG79893.1\|1671779_1672667_-\|N-acetylmannosamine-kinase	unknown	unknown	gnl\|CDD\|224851
LS483409.1\|SQG79894.1\|1672767_1672971_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
LS483409.1\|SQG79880.1\|1655239_1655473_-\|toxin-antitoxin-system,-antitoxin-component,AbrB-family	unknown	unknown	gnl\|CDD\|225215
LS483409.1\|SQG79889.1\|1663846_1664176_-\|CRISPR-associated-protein-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
LS483409.1\|SQG79882.1\|1657160_1657985_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
LS483409.1\|SQG79890.1\|1664187_1665054_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
LS483409.1\|SQG79884.1\|1658450_1659734_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
LS483409.1\|SQG79886.1\|1662518_1662899_-\|HicB-antitoxin	unknown	unknown	gnl\|CDD\|374224
LS483409.1\|SQG79885.1\|1659955_1661791_-\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
LS483409.1\|SQG79877.1\|1652910_1653084_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483409.1\|SQG79881.1\|1655631_1657074_-\|putative-transcriptional-repressor	unknown	unknown	gnl\|CDD\|224235
LS483409.1\|SQG79891.1\|1665053_1669208_-\|CRISPR-associated-protein	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
LS483409.1\|SQG79876.1\|1652095_1652914_-\|Replication-initiator-protein-A-(RepA)-N-terminus	unknown	unknown	gnl\|CDD\|369151
LS483409.1\|SQG79895.1\|1672974_1674246_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|381091
LS483409.1\|SQG79892.1\|1669482_1671774_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|236731
LS483409.1\|SQG79878.1\|1653295_1654657_-\|tRNA-(Uracil-5-)-methyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225174
LS483409.1\|SQG79888.1\|1663194_1663857_-\|CRISPR-associated-protein	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
LS483409.1\|SQG79879.1\|1654847_1655243_-\|prophage-maintenance-system-killer-protein	unknown	unknown	gnl\|CDD\|226180

Protein	Function_ID	Function_description	E-value
LS483409.1\|SQG79887.1\|1662910_1663099_-\|HicA-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	8.16808e-15
LS483409.1\|SQG79883.1\|1657981_1658458_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	8.13446e-60
LS483409.1\|SQG79893.1\|1671779_1672667_-\|N-acetylmannosamine-kinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	7.14715e-58
LS483409.1\|SQG79894.1\|1672767_1672971_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	3.00496e-15
LS483409.1\|SQG79880.1\|1655239_1655473_-\|toxin-antitoxin-system,-antitoxin-component,AbrB-family	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	7.60191e-05
LS483409.1\|SQG79889.1\|1663846_1664176_-\|CRISPR-associated-protein-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.73761e-47
LS483409.1\|SQG79882.1\|1657160_1657985_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	5.0373e-151
LS483409.1\|SQG79890.1\|1664187_1665054_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	7.13504e-130
LS483409.1\|SQG79884.1\|1658450_1659734_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
LS483409.1\|SQG79886.1\|1662518_1662899_-\|HicB-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	5.35551e-17
LS483409.1\|SQG79885.1\|1659955_1661791_-\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
LS483409.1\|SQG79881.1\|1655631_1657074_-\|putative-transcriptional-repressor	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	4.11668e-55
LS483409.1\|SQG79891.1\|1665053_1669208_-\|CRISPR-associated-protein	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
LS483409.1\|SQG79876.1\|1652095_1652914_-\|Replication-initiator-protein-A-(RepA)-N-terminus	gnl\|CDD\|369151	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus. This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.	2.60612e-33
LS483409.1\|SQG79895.1\|1672974_1674246_-\|DNA-binding-response-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	8.1017e-54
LS483409.1\|SQG79892.1\|1669482_1671774_-\|glycosyl-hydrolase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
LS483409.1\|SQG79878.1\|1653295_1654657_-\|tRNA-(Uracil-5-)-methyltransferase-family-protein	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	9.34899e-180
LS483409.1\|SQG79888.1\|1663194_1663857_-\|CRISPR-associated-protein	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.70179e-115
LS483409.1\|SQG79879.1\|1654847_1655243_-\|prophage-maintenance-system-killer-protein	gnl\|CDD\|226180	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only].	2.90897e-28

>LS483409.1|SQG79885.1|1659955_1661791_-|GTP-binding-protein-LepA
MDIQELKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFSYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRQEIEDVIGLDASEAVLASAKAGIGIEEILEQIVEYVPAPAGDVEAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQLMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTVTLAENPAEAPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTKVASIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDENRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSKLVKMDILLNGDKVDALSFIVHSEFAYERGKLIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDNSKK
>LS483409.1|SQG79884.1|1658450_1659734_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKLLTNVSQLKGTLRVPGDKSISHRSIMFGSLAKGTTTVHDILRGEDVLSTMQVFRDLGVDIQDDGNIVTITGVGFDGLKAPKNKLDMGNSGTSIRLISGVLAGQDFTVEMFGDDSLSKRPMDRVTIPLRQMGVEVSGQTDRDLPPLTMRGSKALKPIHYQLPVASAQVKSALIFAALQADGESVIIEKEKTRNHTEDMIVQFGGAIDVNDKEIRIKGGQEFTGQDVVVPGDISSAAFWLVAGLIVPNAKVILENVGINETRTGIIDVIKEMGGKMTISNVDEIAKSATITVETSELHSVEIGGEIIPRLIDELPIIALLATQANGTTIIRDAEELKVKETDRIQVVADALNAMGADITPTDDGMIIKGKTPLHGAKVNTFGDHRIGMMTAIAALLVSDGDVELERAEAINTSYPSFFNDLEVLSRG
>LS483409.1|SQG79883.1|1657981_1658458_-|shikimate-kinase
MARIIIGFMGSGKSTISSLLDKNYIDMDALITERIGMSIADFFAKEGEAKFREIESQVLAELADSDQVISTGGGVVINPINREILAKNPETIYLKSDFETLYDRIEHDTENVRPLFVNNSKEAFKEIFDGRQEMYEAAANRIIDVAGKTPEEIVEEIG
>LS483409.1|SQG79882.1|1657160_1657985_-|prephenate-dehydratase
MKVGYLGPSGSFTHNVAVKAFPEANRMPFANITEVIKSYEEGFVDYAIIPVENSIEGSVHETLDYLFHQAEIEAIAEIIQPIKQQLLATTQTKKIEKIFSHPQAIAQGKKYIKAHYPAAKIEMTASTAYAARFIAEHPEENFAAIAPVAAAKEYGLDIIAQDIQEMDENYTRFWVLGHQKRSFDLAKLNQKVSLALTLPDNLPGALYKALSVFAWRGIDLTKIESRPLKTALGEYFFIVDVENKNDTLVSFALEELSVLGIGYKILGRYDVYKL
>LS483409.1|SQG79881.1|1655631_1657074_-|putative-transcriptional-repressor
MARSNLSRHEELRYEYLLSNLEYLSAREKQEFDYLYNKKQASEVSEPPRSQPSSAYNDNYYDDYYDDAYDNQVDYYDDDNWTSQGLPKYPEEKKQPKRSFRRTSEQQAEILPTYQDNYENYDEAFYQEPEPVTPKKAKKPKKKRRRIRIKRLLKLLGFLVILVMAGMIYMFFKGINDVSSGETNYTAAVTETFNGEDSDDGTNILILGSDQRITQGSSDARTDTIMVMNIGNSDGKIKLVSFMRDTLVNIDGVSYNAYSNDQKLNVAFNIGEQDDNQGAELMRQTLKDNFDINIKYYVMVDFETFAEAIDTLFPNGVEIDAKFGTVDGQAVSSVEVPDDLNMQADGTVPNQTIEVGTQKMDGRTLLNYARFRKDDDGDYGRTQRQQQVISAIINQIKDPSKLFTGSAAIGKIYALTSTNISYPFLLKEGLSVITSGQEGIEQTTIPAEGDWTDDYDMYGGLGIAIDFDKYQEELKELGLR
>LS483409.1|SQG79880.1|1655239_1655473_-|toxin-antitoxin-system,-antitoxin-component,AbrB-family
MIVKSRKQGNSLMITIPSYLNVPEGTEYEVKASANGELIFSPVEKSKREFATNEDISAITDDIFKDYDDVFKELVDK
>LS483409.1|SQG79879.1|1654847_1655243_-|prophage-maintenance-system-killer-protein
MTKYLTEEQLVSINKMVIEKYSPLENSRLVSPSALNMIVNLPEQYVFGKELYPTLMEKATVLFVQLIKKHVFENANKRTAVFALVAFLKLNQIKLMVSTKELVDFTVLIATNPLTDDSFKEYCEWLNERVD
>LS483409.1|SQG79878.1|1653295_1654657_-|tRNA-(Uracil-5-)-methyltransferase-family-protein
MLSKNAIVDAEITDLSHEGAGVAKVDGFVFFVENALPGEKIKMRVLKVKKNIGFGKVEEYVTISEHRNQDLNVDYLRTGIADFGHLAYAEQLKFKRKQVMDNLYKTAGISDIEVSETLGMAHPYAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSGEMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKNTNAIFGNEFKTLYGKDTIIDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVKDAKRNAALNGITNAHYVADSAEHAMATWSKDGIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPATMARDIKLYQELGYKLIKVQPVDLFPNTHHVECVVLLQRSNG
>LS483409.1|SQG79877.1|1652910_1653084_-|Uncharacterised-protein
MQKKEQSSRQIVMCHLVTILGVDIEKATQLVDEMEQVGLIRFDEFGNVGLLVLEGQS
>LS483409.1|SQG79876.1|1652095_1652914_-|Replication-initiator-protein-A-(RepA)-N-terminus
MKRITANQYQTSERYYKLPKVLFESERYKDMKLEVKVAYAVLKDRLELSLSKGWIDEDGAIFLIYSNSNLMALLGCSKSKLLSIKKTLREYGLIDEVQQSSSEKGRMANKIYLGELEHEPNPVLDSNGASVKKTPGGSQRKTGPVLNSAPSETEGSKTKYSETEGSDFIIEDEEERQLVDGKQEENFSSKVDAVTKYDRDYIWGLVHDQLRQTGLSQSASDYAMIYFSERYQYALEHMRFARSAEVIAEYVFNGVLSEWTKQLRRQEAKGGD
>LS483409.1|SQG79886.1|1662518_1662899_-|HicB-antitoxin
MLKSYPAIFHKEDDGSFWVEFPGFGGGTEGDDVEEAMKNAREMLESSLAAYLDEGLELPKVVDMSELSVEDGFITLIQADPSPYLKSTKAIRKNVTVPEWLVRLADREHVNYSEVLTQALEKKLQL
>LS483409.1|SQG79887.1|1662910_1663099_-|HicA-toxin
MPLTGRELAKLAVLKGWKEVRVKGSHHQFKKDGVPYILTIPIHGNKVLGVGLEKKILKDIGL
>LS483409.1|SQG79888.1|1663194_1663857_-|CRISPR-associated-protein
MKINFPILDEPIEILDATILTVEDVTVFSNLVRQFYSYSEECDLKLFDEKLRSLKVSELLLVTDIFGFDVNSQSMLKLIHADLESQLNDKPEVKSMIEQLANTITELLSYECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEILQIYNYLSKKKLLIFVNSGAYLTKNEMEKLIEYIKLSNQKVLFLEPRKLYDFPQYVLDSDYFLIAENMN
>LS483409.1|SQG79889.1|1663846_1664176_-|CRISPR-associated-protein-Cas2
MRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNSANKAMIDRLQANNPKKGSITLLTVTEKQFARMIYLNGERNTSVANSDRRLVFLGEDYSDEN
>LS483409.1|SQG79890.1|1664187_1665054_-|CRISPR-associated-endonuclease-Cas1
MGWRTVIVNEHSKLSYKNNHLIFKDAYHTEMIHLEEIDILLLETTNIVLTTMLLERLVERNILIIFCDEKRLPTAMLTPYYGRHDSSLQLTNQIAWDDDVKCDVWTTIIAQKILNQSMYLGECSFFEKSQSIMELYHGLEPFDPSNREGHSARIYFNTLFGNDFSREQDNDINAGLDYGYTLLLSMFARELVVCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIVYENRNASFVKIKRELFTMFDETYSYNHKEMFLNNIVSDYTKKVVKALNHGGKGVPEFRI
>LS483409.1|SQG79891.1|1665053_1669208_-|CRISPR-associated-protein
MKKSYSIGLDIGTNSVGWAVITDDYKVPAKKMRVLGNTDKRYIKKNLLGALLFDSGETAEATRLKRTARRRYTRRKNRLRYLQDIFTEEMAKVDDSFFQRLDESFLTDDDKNFDSHPIFGNKAEEDAYHQKFPTIYHLREYLADSSEKADLRLVYLALAHIIKYRGHFLIEGKLNAENTDVQKLFTDFVGVYDRTFDDSHLSEITVDAASTLTEKISKSRRLENLIKYYPTEKKNTLFGNLVALALGLQPNFKTNFKLSDDAKLQFSKDTYEEDLEELLGKIGDDYADLFTSAKNLYDAILLSGILTVDDNSTKAPLSASMIKRYVEHHEDLEKLKEFIKANKSELYHEIFKDETKNGYAGYIKNGVKQDVFYKYLKNTLLKMGGSDYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMHAILRRQGDYYPFLKENQDRIEKILTFRIPYYVGPLVRKDSRFAWAEYRSDEKITPWNFDKVIDKEKSAEKFITRMTLNDLYLPEEKVLPKHSHVYETYAVYNELTKIKYVNEQGKESFFDSNMKQEIFDHVFKENRKVTKEKLLNYLNKEFPEYRIKDLIGLDKENKSFNASLGTYHDLKKILDKAFLDDKVNEEVIEDIIKTLTLFEDKDMIHERLQKYSDIFTADQLKKLERRHYTGWGRLSYKLINGIRNKENNKTILDYLIDDGSANRNFMQLINDDTLPFKQIIQKSQVVGDVDDVEAVVHDLPGSPAIKKGILQSVKIVDELVKVMGDNPDNIVIEMARENQTTNRGRSQSQQRLKKLQNSLKELGSNILNEEKPSYIEDKVENSHLQNDQLFLYYIQNGKDMYTGDELDIDHLSDYDIDHIIPQAFIKDDSIDNRVLTSSAKNRGKSDDVPSLDIVRARKAEWVRLYKSGLISKRKFDNLTKAERGGLTEADKAGFIKRQLVETRQITKHVAQILDARFNTESDENDKVIRDVKVITLKSNLVSQFRKDFEFYKVREINDYHHAHDAYLNAVVGTALLKKYPKLASEFVYGEYKKYDVHKLIAKSSDDHSEMGKATVKYFFYSNLMNFFKTKVKYADGRVFERPDIETNADGEIVWNKQTDFEKVRKVLSYPQVNIVKKVETQTGGFSKESILPKGDSDKLIPRKTKKVYWDTKKYGGFDSPTVAYSVFVVADVEKGKAKKLKTVKELVGISIMERSFFEENPVEFLENKGYHNIREDKLIKLPKYSLFEFEGGRRRLLASVRTSDNKKGELQKGNEVVLPQYMVDLLYHANKVKTTKGLEHLEYLVKHKQEFEDLFNLILRIARINILKTKVVDNLINEFTDYDEEGIIALSESFINLLKFTSFGAPGAFKFLKLEVKQSNLRYESITEILNATLIHQSITGLYETRIDLSKLGEE
>LS483409.1|SQG79892.1|1669482_1671774_-|glycosyl-hydrolase
MKFLNGGWLVKDGYEVKYATHLYDYRVEPNRLTVYMPYSYVAHKGATLDGGLMTMEIFTPREEIIGVKIYNHKGQVKKAPQFELSTEKVASQIFDNEEQLTLTSDDLSISISKGEQLTVEFAYKGKVIAQSLPRSKAYITDDKKVAHVSEQLTIDVGEKIYGLGERFTNFVKNGQTVDIWNEDGGTGTEQAYKNIPFYVSNKGYGVFVNSSDKVSFEVGSEKVSRVQFSVPGESLEYYVIAGDSMKDVLGHYTDLTGKPSLPPAWTFGLWLSTSFLTDYDEATVNSFVDGMIERDIPLEVFHFDCLWMKEYEWCNFEWDDRTFPDPVNMLKRLKEKGLKICVWINPYIGQKSPLFDEGAEHGYFLKKANGDIWQWDKWQAGMAIVDFTNPEACQWYESKLKNLLDMGVDCFKTDFGERIPTDTVYYNHADPAKMHNYYAYLYNEVVFNLLKRERGDKEAVVFARSASVGSQKFPVHWGGDSTSDYPSMAESLRAGLSFGLGGFGYWSHDISGFEAGANPDLYKRWTQFGLLSSHSRYHGSWEYKVPWLYGDEAVDVTRAFTKLKLSLMPYLQKEAVQTSQSGVPMMRAMVLEFPKDLATHDLDQQYMLGESLLVAPIFNDKGQKDFYVPNAGGAWIDLLTDKAYSAGQWYQENFDYFHLPVLVRPNSILVRKEAVNRAEYDYNQQVTVHVYNLEDGKTAQTAIFDTQGQKAATIKISRKGGDYHLETTGLIDALLHIHYIDDDKVKHYKTALKDNPQTITLNA
>LS483409.1|SQG79893.1|1671779_1672667_-|N-acetylmannosamine-kinase
MPYFCIDVGGTMVKYALLDEHEAVLEHDEIPTQKESKEAFIHSLSKLINPYLTSFEIKGIGISFPGHIVPETGVALQAGAIGVLSGCNVIDLVRQELSQPDIPIIIENDANCAAIAEAYSGRGQDCDDFCLITIGTGIGGAFVHDKKVVHGHSYKAGELGMMIIDYQESGYQTLHDLASTSALVKQYKVLKGLPSEETIHGAAIFEDNDLAVKRLIQEWSTRLAITIFNVVCQNDPDKVLLGGGISRNPHLLPYILLALAKNPFWETFEVPIEICQHQNLAGLLGAYHLLKEKGE
>LS483409.1|SQG79894.1|1672767_1672971_-|AraC-family-transcriptional-regulator
MDESFLNYLEKVRMEKATDLLKESHLMVYEIADKVGYNNIDYFYKKFKHFYHISPNEYRRQIAQKSK
>LS483409.1|SQG79895.1|1672974_1674246_-|DNA-binding-response-regulator
MKKKNLFVKNLAIISGGRKVKKVLIVDDEKIIREGLKYLIDWENYGFSVVAMASNGKEGLQAIETYHPDLVITDIKMPEQTGLEMVQTAKERLDYPFYSIILSGYSEFEYAQQAVSLGFTSYLLKPVDEDELIAVLKTIQEETAKLDENDFEKRLFDKIFGTDKTGLTDYQFINCSRFDQAIPVDILEQLEELPLKYVVLNNLSKYYLILLTTAPLNQDVYQFTKICANRGKIISTGWVSAKQDLTVIPKQLNDLSEAAFMFPNQLILPEKITRMSPEIMIPVTLDDLVSKIIATNDLTTVVMAYGRSLCADYYLKDDLIWKMRHDYATILDKIKEKLQKSIAVDESAFCEKARQADSYPELITLFKEELEKLSRQIAEEFNNIDIIDQLIYYVDRHYEEDLTLKDIADHFGYNSAYLGKKFK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483409_1	1.1\|1470829\|26\|LS483409\|CRISPRCasFinder	1470829-1470854	26	MT684590	Streptomyces phage LilMartin, complete genome	116452-116477	5	0.808
LS483409_1	1.1\|1470829\|26\|LS483409\|CRISPRCasFinder	1470829-1470854	26	MT897905	Streptomyces phage MulchMansion, complete genome	118086-118111	5	0.808
LS483409_2	2.1\|1661996\|29\|LS483409\|CRT	1661996-1662024	29	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	301194-301222	6	0.793
LS483409_2	2.2\|1662061\|29\|LS483409\|CRT	1662061-1662089	29	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	301194-301222	6	0.793
LS483409_2	2.3\|1662126\|29\|LS483409\|CRT	1662126-1662154	29	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	301194-301222	6	0.793
LS483409_2	2.4\|1662191\|29\|LS483409\|CRT	1662191-1662219	29	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	301194-301222	6	0.793
LS483409_2	2.5\|1662256\|30\|LS483409\|CRT	1662256-1662285	30	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	412046-412075	6	0.8
LS483409_2	2.5\|1662256\|30\|LS483409\|CRT	1662256-1662285	30	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	9304-9333	6	0.8
LS483409_2	2.6\|1662322\|30\|LS483409\|CRT	1662322-1662351	30	MN428050	Mycobacterium phage Apex, complete genome	48667-48696	8	0.733
LS483409_2	2.6\|1662322\|30\|LS483409\|CRT	1662322-1662351	30	MT897910	Mycobacterium phage VioletZ, complete genome	48557-48586	9	0.7
LS483409_2	2.6\|1662322\|30\|LS483409\|CRT	1662322-1662351	30	MT818419	Mycobacterium phage Lolalove, complete genome	48463-48492	9	0.7
LS483409_2	2.6\|1662322\|30\|LS483409\|CRT	1662322-1662351	30	MT639648	Mycobacterium phage Heath, complete genome	48069-48098	9	0.7
LS483409_2	2.6\|1662322\|30\|LS483409\|CRT	1662322-1662351	30	NC_042034	Mycobacterium phage ChrisnMich, complete sequence	47429-47458	9	0.7
LS483409_2	2.6\|1662322\|30\|LS483409\|CRT	1662322-1662351	30	NC_011044	Mycobacterium phage Nigel, complete genome	48437-48466	9	0.7
LS483409_2	2.6\|1662322\|30\|LS483409\|CRT	1662322-1662351	30	KF493881	Mycobacterium phage JAMaL, complete genome	48621-48650	9	0.7

1. spacer 1.1|1470829|26|LS483409|CRISPRCasFinder matches to MT684590 (Streptomyces phage LilMartin, complete genome) position: , mismatch: 5, identity: 0.808

cgagtcttgaaattaatgaacgagtt	CRISPR spacer
ccagtcttgaaattaatgaacttctc	Protospacer
* *******************   *.

2. spacer 1.1|1470829|26|LS483409|CRISPRCasFinder matches to MT897905 (Streptomyces phage MulchMansion, complete genome) position: , mismatch: 5, identity: 0.808

cgagtcttgaaattaatgaacgagtt	CRISPR spacer
ccagtcttgaaattaatgaacttctc	Protospacer
* *******************   *.

3. spacer 2.1|1661996|29|LS483409|CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.793

aaatcgttgcgtaaaatgaaaaacaaaca	CRISPR spacer
aatggtttgcgtaaaatgaaaaacagact	Protospacer
**    *******************.**

4. spacer 2.2|1662061|29|LS483409|CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.793

aaatcgttgcgtaaaatgaaaaacaaaca	CRISPR spacer
aatggtttgcgtaaaatgaaaaacagact	Protospacer
**    *******************.**

5. spacer 2.3|1662126|29|LS483409|CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.793

aaatcgttgcgtaaaatgaaaaacaaaca	CRISPR spacer
aatggtttgcgtaaaatgaaaaacagact	Protospacer
**    *******************.**

6. spacer 2.4|1662191|29|LS483409|CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.793

aaatcgttgcgtaaaatgaaaaacaaaca	CRISPR spacer
aatggtttgcgtaaaatgaaaaacagact	Protospacer
**    *******************.**

7. spacer 2.5|1662256|30|LS483409|CRT matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 6, identity: 0.8

ctgggtcgcaagcacctcgggcttgctgcg	CRISPR spacer
cagtgccgcaagcacctcggccttgttgcc	Protospacer
* * *.************** ****.***

8. spacer 2.5|1662256|30|LS483409|CRT matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

ctgggtcgcaagcacctcgggcttgctgcg	CRISPR spacer
cagtgccgcaagcacctcggccttgttgcc	Protospacer
* * *.************** ****.***

9. spacer 2.6|1662322|30|LS483409|CRT matches to MN428050 (Mycobacterium phage Apex, complete genome) position: , mismatch: 8, identity: 0.733

agaccac---cgagtggctgtccaagcagctcg	CRISPR spacer
---ccctgcgcgactggctgtccaagcagctgc	Protospacer
   ** .   *** *****************

10. spacer 2.6|1662322|30|LS483409|CRT matches to MT897910 (Mycobacterium phage VioletZ, complete genome) position: , mismatch: 9, identity: 0.7

agaccaccgagtggctgtccaagcagctcg	CRISPR spacer
cgctgcgcgactggctgtccaagcagctgc	Protospacer
 * .   *** *****************

11. spacer 2.6|1662322|30|LS483409|CRT matches to MT818419 (Mycobacterium phage Lolalove, complete genome) position: , mismatch: 9, identity: 0.7

agaccaccgagtggctgtccaagcagctcg	CRISPR spacer
cgctgcgcgactggctgtccaagcagctgc	Protospacer
 * .   *** *****************

12. spacer 2.6|1662322|30|LS483409|CRT matches to MT639648 (Mycobacterium phage Heath, complete genome) position: , mismatch: 9, identity: 0.7

agaccaccgagtggctgtccaagcagctcg	CRISPR spacer
cgctgcgcgactggctgtccaagcagctgc	Protospacer
 * .   *** *****************

13. spacer 2.6|1662322|30|LS483409|CRT matches to NC_042034 (Mycobacterium phage ChrisnMich, complete sequence) position: , mismatch: 9, identity: 0.7

agaccaccgagtggctgtccaagcagctcg	CRISPR spacer
cgctgcgcgactggctgtccaagcagctgc	Protospacer
 * .   *** *****************

14. spacer 2.6|1662322|30|LS483409|CRT matches to NC_011044 (Mycobacterium phage Nigel, complete genome) position: , mismatch: 9, identity: 0.7

agaccaccgagtggctgtccaagcagctcg	CRISPR spacer
cgctgcgcgactggctgtccaagcagctgc	Protospacer
 * .   *** *****************

15. spacer 2.6|1662322|30|LS483409|CRT matches to KF493881 (Mycobacterium phage JAMaL, complete genome) position: , mismatch: 9, identity: 0.7

agaccaccgagtggctgtccaagcagctcg	CRISPR spacer
cgctgcgcgactggctgtccaagcagctgc	Protospacer
 * .   *** *****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

244735 : 286136

Streptococcus_phage(27.27%)

tRNA,transposase,integrase

attL 243573:243588|attR 268752:268767

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
243573:243588	attL	NA	NA	NA	NA
SQG78512.1\|244735_246082_+\|tRNA	cysteinyl-tRNA synthetase	A0A1V0SAQ2	Catovirus	1.8e-50	35.2
SQG78513.1\|246074_246479_+	ribonuclease III family protein	NA	NA	NA	NA
SQG78514.1\|246541_247291_+	RNA methyltransferase	A0A2D1A6G0	Rhodococcus_phage	6.7e-07	26.3
SQG78515.1\|247323_247854_+	putative RNA-binding protein containing a PIN domain protein	NA	NA	NA	NA
SQG78516.1\|248014_248875_+\|tRNA	DegV family protein in cluster with TrmH family tRNA/rRNA methyltransferase YacO	NA	NA	NA	NA
SQG78517.1\|249175_249682_+	bacteriophage CI transcriptional regulator	NA	NA	NA	NA
SQG78518.1\|249816_250773_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
SQG78519.1\|250975_251422_+	50S ribosomal protein L13	NA	NA	NA	NA
SQG78520.1\|251444_251837_+	SSU ribosomal protein S9p (S16e)	NA	NA	NA	NA
SQG78521.1\|251965_253120_-\|integrase	site-specific recombinase, phage integrase family	A0A1S5S7K9	Streptococcus_phage	3.3e-45	33.7
SQG78522.1\|253185_253728_-	putative transcriptional regulator	NA	NA	NA	NA
SQG78523.1\|253877_254165_+	Uncharacterised protein	NA	NA	NA	NA
SQG78524.1\|254310_254589_+	Uncharacterised protein	NA	NA	NA	NA
SQG78525.1\|254594_254924_+	plasmid replication initiation protein RepA	Q9MCM7	Streptococcus_virus	2.1e-05	27.7
SQG78526.1\|254926_255580_+	Uncharacterised protein	NA	NA	NA	NA
SQG78527.1\|255642_256515_+	DNA replication protein, putative	A0A0S2MYA8	Enterococcus_phage	8.2e-41	63.4
SQG78528.1\|256880_257375_+	Uncharacterised protein	NA	NA	NA	NA
SQG78529.1\|257689_258946_+	Plasmid recombination enzyme	M1NXP9	Cellulophaga_phage	1.3e-10	30.8
SQG78530.1\|259118_259649_+	Uncharacterised protein	NA	NA	NA	NA
SQG78531.1\|259827_260157_-	Toxin to DNA-damage-inducible protein J	NA	NA	NA	NA
SQG78532.1\|260146_260437_-	DNA-damage-inducible protein J	NA	NA	NA	NA
SQG78533.1\|260836_262060_-\|integrase	phage integrase family recombinase	NA	NA	NA	NA
SQG78534.1\|262265_262388_-	phage DNA packaging protein Nu1	NA	NA	NA	NA
SQG78535.1\|262499_262832_-	addiction module toxin	NA	NA	NA	NA
SQG78536.1\|262818_263124_-	addiction module antitoxin	NA	NA	NA	NA
SQG78537.1\|263180_264236_-	CHAP protein	NA	NA	NA	NA
SQG78538.1\|264244_264472_-	ICESt1 ORFB	NA	NA	NA	NA
SQG78539.1\|264468_266406_-	ICESt1 ORFC	NA	NA	NA	NA
SQG78540.1\|266418_268938_-	ATP/GTP-binding protein	NA	NA	NA	NA
268752:268767	attR	NA	NA	NA	NA
SQG78541.1\|268948_269416_-	ICESt1 ORFE	NA	NA	NA	NA
SQG78542.1\|269366_269594_-	ICESt1 ORFF	NA	NA	NA	NA
SQG78543.1\|269610_270612_-	ICESt1 ORFG	NA	NA	NA	NA
SQG78544.1\|270621_271176_-	ICESt1 ORFH	NA	NA	NA	NA
SQG78545.1\|271193_271631_-	Uncharacterised protein	A0A0S2MWT4	Cellulophaga_phage	4.9e-10	48.6
SQG78546.1\|271645_272032_-	Uncharacterised protein	NA	NA	NA	NA
SQG78547.1\|272009_273239_-	ICESt1 ORFJ phage replication initiation factor	NA	NA	NA	NA
SQG78548.1\|273296_273551_-	plasmid encoded toxin Txe superfamily	NA	NA	NA	NA
SQG78549.1\|273543_273810_-	antitoxin of toxin-antitoxin stability system	NA	NA	NA	NA
SQG78550.1\|274073_275732_-	ICESt1 ORFK, FtsK/SpoIIIE family protein	A0A1S5SFB5	Streptococcus_phage	2.5e-54	32.2
SQG78551.1\|275738_276149_-	Uncharacterised protein	NA	NA	NA	NA
SQG78552.1\|276171_276486_-	Uncharacterised protein	NA	NA	NA	NA
SQG78553.1\|276600_276828_-	Uncharacterised protein	NA	NA	NA	NA
SQG78554.1\|276824_277061_-	Uncharacterised protein	NA	NA	NA	NA
SQG78555.1\|277189_277399_-	addiction module toxin	NA	NA	NA	NA
SQG78556.1\|277468_277741_-	addiction module antitoxin	NA	NA	NA	NA
SQG78557.1\|278414_278777_+	putative transcriptional regulator	A0A1L2JY18	Aeribacillus_phage	2.6e-09	42.7
SQG78558.1\|278783_279635_+	ICESt1 ORFQ	NA	NA	NA	NA
SQG78559.1\|279654_280008_-	putative lipoprotein	NA	NA	NA	NA
SQG78560.1\|280814_281072_+	Uncharacterised protein	NA	NA	NA	NA
SQG78561.1\|281158_281557_-\|transposase	transposase	NA	NA	NA	NA
SQG78562.1\|282065_282239_+	Uncharacterised protein	NA	NA	NA	NA
SQG78563.1\|282331_282904_+	NADPH-dependent F420 reductase	NA	NA	NA	NA
SQG78564.1\|284375_284582_-\|transposase	transposase	NA	NA	NA	NA
SQG78565.1\|284600_284987_-\|transposase	transposase	A0A146ICT8	Staphylococcus_phage	4.5e-15	51.0
SQG78566.1\|285596_286136_-\|transposase	transposase	A0A1X9I619	Streptococcus_phage	1.5e-64	77.4

DBSCAN-SWA_2

485456 : 535331

Streptococcus_phage(57.45%)

head,terminase,integrase,portal

attL 483286:483302|attR 535683:535699

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
483286:483302	attL	NA	NA	NA	NA
SQG78751.1\|485456_486200_+	polar amino acid transport system ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.8e-12	26.3
SQG78752.1\|486290_486515_+	membrane protein	NA	NA	NA	NA
SQG78753.1\|486578_487493_+	NADPH-dependent thioredoxin reductase	G3MA85	Bacillus_virus	1.6e-87	52.1
SQG78754.1\|487791_488952_-\|integrase	phage integrase	A0A141E0Q7	Streptococcus_phage	3.8e-78	41.6
SQG78755.1\|489133_489799_-	NYN domain	A0A0R6PGY5	Moraxella_phage	4.9e-46	46.5
SQG78756.1\|490064_490859_-	Uncharacterised protein	NA	NA	NA	NA
SQG78757.1\|490886_491090_-	phage protein	O34033	Streptococcus_phage	1.5e-09	42.2
SQG78758.1\|491152_491935_-	Phage transcriptional repressor	M1PKS2	Streptococcus_phage	2.6e-78	62.6
SQG78759.1\|492099_492255_+	Uncharacterised protein	X2KTZ3	Streptococcus_phage	2.9e-10	82.9
SQG78760.1\|492181_492871_-	phage protein	A0A1X9I6S1	Streptococcus_phage	2.3e-99	76.9
SQG78761.1\|492926_493136_+	putative cro protein	B3GVX4	Streptococcus_phage	7.7e-14	66.7
SQG78762.1\|493348_493498_+	Uncharacterised protein	NA	NA	NA	NA
SQG78763.1\|493497_493674_+	Uncharacterised protein	A0A1S5S9V5	Streptococcus_phage	5.9e-07	52.0
SQG78764.1\|493662_494451_-	phage protein	A0A1S5S9V3	Streptococcus_phage	2.3e-103	72.0
SQG78765.1\|494506_494653_+	Uncharacterised protein	NA	NA	NA	NA
SQG78766.1\|494626_494950_-	Uncharacterised protein	A0A0A8WJ72	Clostridium_phage	1.4e-06	30.3
SQG78767.1\|495050_495302_+	phage protein	A3F618	Streptococcus_phage	1.9e-22	62.4
SQG78768.1\|495340_495481_+	Uncharacterised protein	A0A1P8VVR9	Streptococcus_phage	4.0e-06	56.1
SQG78769.1\|495490_495718_+	phage protein	NA	NA	NA	NA
SQG78770.1\|495704_497000_+	chromosome segregation ATPases	A0A097BY67	Enterococcus_phage	1.8e-137	59.6
SQG78771.1\|497019_497355_+	phage protein	A0A1X9I5N1	Streptococcus_phage	9.2e-17	46.8
SQG78772.1\|497354_498482_+	phage protein	A0A0K2CZH1	Paenibacillus_phage	6.3e-110	54.3
SQG78773.1\|498491_498626_+	Uncharacterised protein	NA	NA	NA	NA
SQG78774.1\|498627_499239_+	phage protein	A0A097BY29	Enterococcus_phage	1.0e-29	47.1
SQG78775.1\|499252_499876_+	AP2 domain protein	D2XPY9	Bacillus_virus	4.3e-44	44.4
SQG78776.1\|499877_501461_+	DEAD/DEAH box helicase	Q5YA94	Bacillus_phage	4.3e-197	65.5
SQG78777.1\|501477_503751_+	ATPase	Q5YA88	Bacillus_phage	1.7e-284	64.0
SQG78778.1\|504038_504290_+	phage protein	NA	NA	NA	NA
SQG78779.1\|504301_504655_+	prophage Pi3 protein	Q9AZU6	Lactococcus_phage	3.7e-16	42.4
SQG78780.1\|504651_505047_+	phage associated protein	Q5YA86	Bacillus_phage	2.3e-35	53.4
SQG78781.1\|505043_505265_+	phage associated protein	NA	NA	NA	NA
SQG78782.1\|505267_505417_+	phage associated protein	Q77PS0	Streptococcus_phage	8.0e-05	55.3
SQG78783.1\|505413_505680_+	Uncharacterised protein	NA	NA	NA	NA
SQG78784.1\|505651_505822_+	Uncharacterised protein	NA	NA	NA	NA
SQG78785.1\|506194_506608_+	transcriptional activator-phage associated	A0A1X9I5N8	Streptococcus_phage	3.4e-37	57.8
SQG78786.1\|507048_507969_+	phage protein	NA	NA	NA	NA
SQG78787.1\|507971_508436_+	Uncharacterised protein	NA	NA	NA	NA
SQG78788.1\|508599_508917_+\|terminase	phage terminase	A1EAE0	Streptococcus_phage	5.4e-27	65.9
SQG78789.1\|508913_510305_+\|terminase	phage terminase, large subunit	A0A097BY88	Enterococcus_phage	1.3e-144	55.9
SQG78790.1\|510317_511793_+\|portal	phage portal protein	C9W9H5	Streptococcus_virus	1.8e-133	51.8
SQG78791.1\|511773_513165_+	phage protein	A7J293	Streptococcus_phage	3.3e-100	53.7
SQG78792.1\|513329_513440_+	Uncharacterised protein	NA	NA	NA	NA
SQG78793.1\|513740_514376_+	phage scaffold protein	A0A286QQH5	Streptococcus_phage	9.0e-29	59.7
SQG78794.1\|514388_514754_+	phage structural protein	A0A286QPB3	Streptococcus_phage	4.5e-25	50.0
SQG78795.1\|514757_515804_+\|head	phage head protein	A0A286QR01	Streptococcus_phage	2.2e-109	57.9
SQG78796.1\|515818_515962_+	phage protein	NA	NA	NA	NA
SQG78797.1\|515979_516336_+	phage protein	O34064	Streptococcus_phage	6.5e-37	65.5
SQG78798.1\|516332_516611_+	phage protein	NA	NA	NA	NA
SQG78799.1\|516607_516952_+	phage protein	A7J2A0	Streptococcus_phage	1.7e-21	47.4
SQG78800.1\|516959_517319_+	phage protein	A7J2A1	Streptococcus_phage	5.2e-34	65.0
SQG78801.1\|517333_517912_+	phage protein	A7J2A2	Streptococcus_phage	1.1e-52	60.6
SQG78802.1\|517973_518438_+	phage protein	A7J2A3	Streptococcus_phage	1.5e-33	51.3
SQG78803.1\|518569_518743_+	phage protein	NA	NA	NA	NA
SQG78804.1\|518762_519077_+	phage protein	A7J2A5	Streptococcus_phage	5.0e-25	71.4
SQG78805.1\|519336_522648_+	phage protein	D2IZH3	Enterococcus_phage	7.0e-24	31.9
SQG78806.1\|522662_523502_+	phage protein	A7J2A6	Streptococcus_phage	2.1e-89	55.7
SQG78807.1\|523518_527979_+	phage protein	A7J2A7	Streptococcus_phage	5.0e-150	59.6
SQG78808.1\|528000_528174_+	Uncharacterised protein	NA	NA	NA	NA
SQG78809.1\|528176_528500_+	Uncharacterised protein	NA	NA	NA	NA
SQG78810.1\|528515_528812_+	phage protein	NA	NA	NA	NA
SQG78811.1\|528808_529006_+	phage membrane protein	Q938J5	Temperate_phage	2.3e-12	59.0
SQG78812.1\|528995_530273_+	Phage lysin, N-acetylmuramoyl-L-alanine amidase	A0A0S2MYF3	Enterococcus_phage	1.4e-145	62.4
SQG78813.1\|530559_531087_+	phage protein	Q938J3	Temperate_phage	9.0e-67	71.8
SQG78814.1\|531074_531932_+	phage protein	Q938J2	Temperate_phage	8.6e-59	44.4
SQG78815.1\|531918_532155_+	paratox	A3F673	Streptococcus_phage	3.8e-09	63.0
SQG78816.1\|532309_532918_+	Multiple antibiotic resistance protein marC	NA	NA	NA	NA
SQG78817.1\|533870_535331_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.2e-98	41.6
535683:535699	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1128415 : 1136957

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG79370.1\|1128415_1128625_-	phage protein	Q7Y4M2	Streptococcus_phage	8.8e-26	79.7
SQG79371.1\|1129093_1129675_+	thymidine kinase	A0A249XZX5	Enterococcus_phage	1.2e-48	53.2
SQG79372.1\|1129713_1130793_+	peptide chain release factor 1	NA	NA	NA	NA
SQG79373.1\|1130792_1131623_+	methyltransferase	NA	NA	NA	NA
SQG79374.1\|1131615_1132215_+	putative translation factor	A0A291ATS8	Pandoravirus	1.8e-18	31.1
SQG79375.1\|1132318_1133569_+	glycine hydroxymethyltransferase	A0A240F2Y9	Aeromonas_phage	5.6e-99	53.7
SQG79376.1\|1133613_1134591_+	Pseudouridylate synthases, 23S RNA-specific	NA	NA	NA	NA
SQG79377.1\|1134590_1135193_+	lipoprotein	A0A1W6JSC2	Bacillus_phage	2.0e-22	40.4
SQG79378.1\|1135199_1136957_+	ABC transporter membrane protein	W8CYL7	Bacillus_phage	2.5e-44	26.4

DBSCAN-SWA_4

1247301 : 1255909

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG79475.1\|1247301_1248222_+	type I pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	1.6e-34	33.5
SQG79476.1\|1248311_1248548_+	putative 30S ribosomal protein S20	NA	NA	NA	NA
SQG79477.1\|1248683_1250024_-	two-component system sensor histidine kinase	Q8QNA2	Ectocarpus_siliculosus_virus	2.2e-08	34.0
SQG79478.1\|1250013_1250688_-	Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	W8CYM9	Bacillus_phage	2.9e-25	32.3
SQG79479.1\|1250885_1253429_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.5e-66	24.3
SQG79480.1\|1253651_1254305_-	phosphate transport system protein	NA	NA	NA	NA
SQG79481.1\|1254335_1255094_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-18	30.5
SQG79482.1\|1255105_1255909_-	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)	G3M9Y6	Bacillus_virus	4.9e-16	28.5

DBSCAN-SWA_5

1400566 : 1409779

Bacillus_phage(37.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG79634.1\|1400566_1401058_-	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	1.3e-46	62.3
SQG79635.1\|1401070_1401784_-	queuosine biosynthesis protein	E7DN68	Pneumococcus_phage	6.2e-63	47.5
SQG79636.1\|1401776_1402223_-	6-pyruvoyl tetrahydrobiopterin synthase	J9PV91	Bacillus_phage	5.8e-43	58.4
SQG79637.1\|1402228_1402876_-	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.1e-61	54.7
SQG79638.1\|1403116_1404886_-	ATP-binding protein	W8CYL7	Bacillus_phage	2.0e-57	30.1
SQG79639.1\|1404888_1406628_-	ATP-binding protein	W8CYL7	Bacillus_phage	2.0e-38	26.4
SQG79640.1\|1406705_1408577_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.3e-64	32.1
SQG79641.1\|1408573_1409779_-\|tRNA	tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	1.2e-42	48.5

DBSCAN-SWA_6

1950939 : 1966836

Streptococcus_phage(76.92%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG80145.1\|1950939_1951776_-	aldo/keto reductase family protein	A0A1V0SDE7	Indivirus	7.6e-28	32.3
SQG80146.1\|1951788_1952610_-	short chain dehydrogenase	NA	NA	NA	NA
SQG80147.1\|1952714_1953587_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG80148.1\|1953723_1954080_-	ArsC family transcription regulator	M1PLC0	Streptococcus_phage	8.0e-35	59.1
SQG80149.1\|1954092_1954578_-	methylated-DNA-[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	6.4e-43	53.4
SQG80150.1\|1954636_1954864_-	Uncharacterised protein	NA	NA	NA	NA
SQG80151.1\|1954964_1956143_-	D-3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	4.6e-180	81.1
SQG80152.1\|1956188_1956737_-	GNAT family acetyltransferase	M1PSC3	Streptococcus_phage	8.8e-57	57.9
SQG80153.1\|1956807_1957899_-	phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	2.7e-174	82.0
SQG80154.1\|1958034_1958673_+	copper homeostasis protein	NA	NA	NA	NA
SQG80155.1\|1958804_1959146_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA
SQG80156.1\|1959202_1960438_-	ammonium transporter	NA	NA	NA	NA
SQG80157.1\|1960837_1961704_-	tetrapyrrole (Corrin/Porphyrin) methylase	M1PLC5	Streptococcus_phage	1.1e-114	71.9
SQG80158.1\|1961710_1962031_-	DNA replication intiation control protein	M1PFV3	Streptococcus_phage	1.5e-29	61.3
SQG80159.1\|1962023_1962824_-	signal peptidase II	NA	NA	NA	NA
SQG80160.1\|1962820_1963696_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	8.7e-75	50.3
SQG80161.1\|1963706_1964342_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.2e-70	66.2
SQG80162.1\|1964528_1965188_-	acetoin utilization protein	M1NSC5	Streptococcus_phage	2.5e-74	65.1
SQG80163.1\|1965361_1966072_-	branched-chain amino acid transport system ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-17	27.4
SQG80164.1\|1966071_1966836_-	branched-chain amino acid transport system ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.5e-17	25.2

DBSCAN-SWA_7

2213751 : 2266627

Pseudomonas_phage(28.57%)

bacteriocin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG80415.1\|2213751_2213952_-\|bacteriocin	putative bacteriocin	NA	NA	NA	NA
SQG80416.1\|2214084_2215449_-	two-component system, AgrA family, sensor histidine kinase	NA	NA	NA	NA
SQG80417.1\|2215461_2216190_-	response regulator	NA	NA	NA	NA
SQG80418.1\|2216288_2216582_-	enterocin A Immunity protein	NA	NA	NA	NA
SQG80419.1\|2216632_2216785_-\|bacteriocin	putative bacteriocin	NA	NA	NA	NA
SQG80420.1\|2217128_2217440_-	enterocin A Immunity protein	NA	NA	NA	NA
SQG80421.1\|2217451_2217601_-\|bacteriocin	putative bacteriocin	NA	NA	NA	NA
SQG80422.1\|2217657_2217909_-\|bacteriocin	putative bacteriocin	NA	NA	NA	NA
SQG80423.1\|2218209_2218350_+	competence stimulating peptide (CSP) precursor	NA	NA	NA	NA
SQG80424.1\|2218366_2219677_-	putative histidine kinase of the competence regulon, ComD	NA	NA	NA	NA
SQG80425.1\|2219681_2220413_-	two-component system, AgrA family, response regulator	A0A1V0E029	Clostridioides_phage	3.3e-19	25.0
SQG80426.1\|2220429_2220756_-	regulatory protein	NA	NA	NA	NA
SQG80427.1\|2220939_2222232_-	family 2 glycosyl transferase	S5WBE2	Pseudomonas_phage	3.0e-07	27.0
SQG80428.1\|2222233_2222533_-\|bacteriocin	putative bacteriocin	NA	NA	NA	NA
SQG80429.1\|2222558_2222741_-	Uncharacterised protein	NA	NA	NA	NA
SQG80430.1\|2222822_2223032_-	DNA-binding protein	NA	NA	NA	NA
SQG80431.1\|2223021_2224035_-\|bacteriocin	putative bacteriocin	NA	NA	NA	NA
SQG80432.1\|2225092_2225290_-\|bacteriocin	putative bacteriocin	NA	NA	NA	NA
SQG80433.1\|2225308_2225560_-\|bacteriocin	putative bacteriocin	NA	NA	NA	NA
SQG80434.1\|2225806_2226064_+\|bacteriocin	putative bacteriocin	NA	NA	NA	NA
SQG80435.1\|2226170_2228318_+	ABC transporter subunit, ATP-binding protein	W8CYL7	Bacillus_phage	1.9e-46	29.0
SQG80436.1\|2228329_2229724_+	ATP-binding cassette transporter subunit	NA	NA	NA	NA
SQG80437.1\|2229915_2230590_+\|protease,bacteriocin	bacteriocin-associated membrane-bound metalloprotease	NA	NA	NA	NA
SQG80438.1\|2230607_2230778_+	Uncharacterised protein	NA	NA	NA	NA
SQG80439.1\|2230795_2231467_+\|protease,bacteriocin	bacteriocin-associated membrane-bound metalloprotease	NA	NA	NA	NA
SQG80440.1\|2231759_2232632_-	dimethyladenosine transferase	NA	NA	NA	NA
SQG80441.1\|2232701_2233226_-	phosphopentomutase	NA	NA	NA	NA
SQG80442.1\|2233222_2233792_-	ribonuclease M5	NA	NA	NA	NA
SQG80443.1\|2233784_2234555_-	TatD DNase family protein	NA	NA	NA	NA
SQG80444.1\|2234691_2237040_-	Cna protein B-type domain-containing protein	NA	NA	NA	NA
SQG80445.1\|2237393_2238332_-	family 3 sortase	NA	NA	NA	NA
SQG80446.1\|2238476_2239910_-	Cna protein B-type domain-containing protein	NA	NA	NA	NA
SQG80447.1\|2240000_2245001_-	peptidoglycan linked protein (LPXTG motif)	NA	NA	NA	NA
SQG80448.1\|2245041_2245635_-	signal peptidase I	NA	NA	NA	NA
SQG80449.1\|2245621_2245879_-	DNA repair ATPase	NA	NA	NA	NA
SQG80450.1\|2246550_2247150_-	UbiE/COQ5 family methlytransferase	NA	NA	NA	NA
SQG80451.1\|2247395_2248961_+	ATP-binding protein	A0A2H4UU96	Bodo_saltans_virus	3.9e-17	25.6
SQG80452.1\|2249408_2250227_-	iron/zinc/copper transport system ATP-binding protein	NA	NA	NA	NA
SQG80453.1\|2250237_2250951_-	iron/zinc/copper transport system permease protein	A0A2R8FG22	Brazilian_cedratvirus	2.6e-16	26.8
SQG80454.1\|2250993_2251920_-	iron/zinc/copper transport system substrate-binding protein	NA	NA	NA	NA
SQG80455.1\|2252176_2253448_-	malate-sodium symport	NA	NA	NA	NA
SQG80456.1\|2253469_2255092_-	malate dehydrogenase	NA	NA	NA	NA
SQG80457.1\|2255248_2256130_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQG80458.1\|2256211_2257615_-	putative glucan-binding protein D, BglB-like protein	NA	NA	NA	NA
SQG80459.1\|2257772_2257952_-	membrane protein	NA	NA	NA	NA
SQG80460.1\|2258112_2259387_-	D-alanine transfer protein	NA	NA	NA	NA
SQG80461.1\|2259379_2259619_-	D-alanine-poly(phosphoribitol) ligase	NA	NA	NA	NA
SQG80462.1\|2259649_2260912_-	membrane protein involved in D-alanine export	A0A125RNP0	Pseudomonas_phage	6.1e-21	27.4
SQG80463.1\|2260908_2262447_-	D-alanine-poly(phosphoribitol) ligase	A0A2K9KZV5	Tupanvirus	2.6e-37	27.7
SQG80464.1\|2262461_2262584_-	D-Ala-teichoic acid biosynthesis protein	NA	NA	NA	NA
SQG80465.1\|2262834_2263011_-	membrane protein	NA	NA	NA	NA
SQG80466.1\|2263248_2263671_-	Uncharacterised protein	NA	NA	NA	NA
SQG80467.1\|2263936_2264656_-	Uncharacterised protein	NA	NA	NA	NA
SQG80468.1\|2264674_2266627_-\|transposase	putative transposase	NA	NA	NA	NA

DBSCAN-SWA_8

2360912 : 2368780

Streptococcus_phage(83.33%)

integrase

attL 2358786:2358802|attR 2367709:2367725

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2358786:2358802	attL	NA	NA	NA	NA
SQG80568.1\|2360912_2361185_-	phage protein	A0A1X9I5U9	Streptococcus_phage	5.0e-21	51.2
SQG80569.1\|2361187_2361529_-	phage protein	NA	NA	NA	NA
SQG80570.1\|2361525_2361771_-	Uncharacterised protein	NA	NA	NA	NA
SQG80571.1\|2361767_2361926_-	Uncharacterised protein	NA	NA	NA	NA
SQG80572.1\|2361936_2362254_-	Uncharacterised protein	NA	NA	NA	NA
SQG80573.1\|2362265_2362460_-	phage membrane protein	NA	NA	NA	NA
SQG80574.1\|2362456_2362774_-	Uncharacterised protein	NA	NA	NA	NA
SQG80575.1\|2362997_2363636_-	prophage ps3 protein 13	R9QNB1	Lactococcus_phage	4.9e-27	39.9
SQG80576.1\|2363651_2363855_-	XRE family transcriptional regulator	NA	NA	NA	NA
SQG80577.1\|2364058_2364577_+	Cro/CI family transcriptional regulator	A0A1X9I723	Streptococcus_phage	5.8e-18	45.5
SQG80578.1\|2364856_2365093_+	membrane protein	NA	NA	NA	NA
SQG80579.1\|2365353_2366520_+\|integrase	phage integrase family recombinase	A0A1X9I6A9	Streptococcus_phage	3.7e-145	66.7
SQG80580.1\|2366645_2367473_+	membrane protein	M1PFV6	Streptococcus_phage	8.6e-32	61.7
SQG80581.1\|2367502_2368780_+	toxic anion resistance protein	M1PLC8	Streptococcus_phage	2.1e-149	70.8
2367709:2367725	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2457834 : 2465973

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQG80664.1\|2457834_2458491_-	Immunodominant antigen A	Q4Z8Z7	Staphylococcus_phage	7.6e-23	71.8
SQG80665.1\|2458696_2459287_-	Aggregation promoting factor	A0A0A7NNK8	Lactobacillus_phage	9.2e-20	66.3
SQG80666.1\|2459419_2460217_-	cobalt/nickel transport system permease protein	NA	NA	NA	NA
SQG80667.1\|2460209_2461052_-	cobalt/nickel transport system ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.8e-16	28.5
SQG80668.1\|2461027_2461870_-	cobalt/nickel transport system ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.8e-16	28.9
SQG80669.1\|2461866_2462421_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
SQG80670.1\|2462430_2463375_-	membrane protein	NA	NA	NA	NA
SQG80671.1\|2463438_2464728_-	insulinase, M16 family peptidase	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	7.7e-19	30.6
SQG80672.1\|2464728_2465973_-	M16 family peptidase	A0A1X9I714	Streptococcus_phage	7.2e-91	42.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483409

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection