CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483416	Corynebacterium ulcerans strain NCTC8639 genome assembly, chromosome: 1	3 crisprs	WYL,DEDDh,cas3,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2,cas5,cas7,cse2gr11,cas8e,cas6e,DinG	0	12	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483416_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483416_1

1541172-1542030

Unclear

Consensus_repeat	Method
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	PILER-CR
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	CRISPRCasFinder
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	CRT
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	PILER-CR

11 spacers

cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

The CRISPR arrays of LS483416_1

>merge|LS483416|1|1541172-1542030|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTTAGCCGAGGTGGACGGCATGAAGACGCAAAGAAGGGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTCTCGATAAGACTGCCCACGAATCACTAATTCATCCCCCGTCGGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTGAAGAGGAACGCTTACGCAAAATTGCCGAATGGGCGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTTTGTAACCTAATCGCGGTTGCGTACGACCGCTGTGTGGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTGTCAATGACCCCGATGATTTCTCTTGGACTGGGACTTCTGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTAGCCCACAGAACACTTACTGATTTAGTGGGGGAAAGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTCTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACCCTCATCGCAGGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTAGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTAGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTGTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTGGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTTTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACCGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTTTCATTCGTGAAGATGCGCGCTTTTTAATGCGCGTGGGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT

>LS483416|1|1|1541172-1541575|PILER-CR
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TAGCCGAGGTGGACGGCATGAAGACGCAAAGAAGG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	CTCGATAAGACTGCCCACGAATCACTAATTCATCCCCCGTCG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GAAGAGGAACGCTTACGCAAAATTGCCGAATGGGC
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTGTAACCTAATCGCGGTTGCGTACGACCGCTGTGTG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GTCAATGACCCCGATGATTTCTCTTGGACTGGGACTTCT
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTAGCCCACAGAACACTTACTGATTTAGTGGGGGAAAGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTCTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACCCTCATCGCAGGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	AGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTA
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTCATTCGTGAAGATGCGCGCTTTTTAATGCGCGTGG


>LS483416|1|1|1541172-1542030|CRISPRCasFinder
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TAGCCGAGGTGGACGGCATGAAGACGCAAAGAAGG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	CTCGATAAGACTGCCCACGAATCACTAATTCATCCCCCGTCG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GAAGAGGAACGCTTACGCAAAATTGCCGAATGGGC
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTGTAACCTAATCGCGGTTGCGTACGACCGCTGTGTG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GTCAATGACCCCGATGATTTCTCTTGGACTGGGACTTCT
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	AGCCCACAGAACACTTACTGATTTAGTGGGGGAAA
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	CTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACCCTCATCGCAG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	AGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTA
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTCATTCGTGAAGATGCGCGCTTTTTAATGCGCGTGG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT

>LS483416|1|1|1541172-1542030|CRT
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TAGCCGAGGTGGACGGCATGAAGACGCAAAGAAGG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	CTCGATAAGACTGCCCACGAATCACTAATTCATCCCCCGTCG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GAAGAGGAACGCTTACGCAAAATTGCCGAATGGGC
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTGTAACCTAATCGCGGTTGCGTACGACCGCTGTGTG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GTCAATGACCCCGATGATTTCTCTTGGACTGGGACTTCT
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	AGCCCACAGAACACTTACTGATTTAGTGGGGGAAA
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	CTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACCCTCATCGCAG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	AGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTA
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTCATTCGTGAAGATGCGCGCTTTTTAATGCGCGTGG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT

>LS483416|1|2|1541705-1542030|PILER-CR
	TAGCCGAGGTGGACGGCATGAAGACGCAAAGAAGG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	CTCGATAAGACTGCCCACGAATCACTAATTCATCCCCCGTCG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GAAGAGGAACGCTTACGCAAAATTGCCGAATGGGC
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTGTAACCTAATCGCGGTTGCGTACGACCGCTGTGTG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GTCAATGACCCCGATGATTTCTCTTGGACTGGGACTTCT
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTAGCCCACAGAACACTTACTGATTTAGTGGGGGAAAGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTCTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACCCTCATCGCAGGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	AGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTA
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	GTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT	TTCATTCGTGAAGATGCGCGCTTTTTAATGCGCGTGG
GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483416.1\|SQH02926.1\|1540678_1540978_+\|putative-CRISPR-associated-protein	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LS483416.1\|SQH02921.1\|1532579_1533785_+\|putative-CRISPR-associated-protein	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
LS483416.1\|SQH02917.1\|1529734_1530292_-\|Gamma-type-carbonic-anhydratase-like-protein	unknown	unknown	gnl\|CDD\|100051
LS483416.1\|SQH02924.1\|1538044_1539076_+\|putative-CRISPR-associated-protein	csb3	cd09764_csb3_CAS-I-U	gnl\|CDD\|187733
LS483416.1\|SQH02919.1\|1531051_1531858_+\|Abhydrolase-domain-containing-protein-6	unknown	unknown	gnl\|CDD\|224001
LS483416.1\|SQH02936.1\|1556134_1557532_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
LS483416.1\|SQH02918.1\|1530370_1530958_-\|NADH-dehydrogenase	unknown	unknown	gnl\|CDD\|380327
LS483416.1\|SQH02927.1\|1542337_1542637_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483416.1\|SQH02934.1\|1550612_1553906_-\|1,4-alpha-glucan-branching-protein	unknown	unknown	gnl\|CDD\|200478
LS483416.1\|SQH02923.1\|1535358_1538040_+\|putative-CRISPR-associated-protein	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
LS483416.1\|SQH02922.1\|1533788_1535366_+\|putative-CRISPR-associated-protein	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
LS483416.1\|SQH02932.1\|1548055_1549141_+\|Inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
LS483416.1\|SQH02931.1\|1547067_1547823_+\|Fe(2+)/Mn(2+)-transporter-pcl1	unknown	unknown	gnl\|CDD\|153123
LS483416.1\|SQH02933.1\|1549198_1550458_-\|lysozyme-M1	unknown	unknown	gnl\|CDD\|119373
LS483416.1\|SQH02928.1\|1543106_1544381_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|225718
LS483416.1\|SQH02925.1\|1539080_1540682_+\|putative-CRISPR-associated-protein	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
LS483416.1\|SQH02920.1\|1531940_1532192_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483416.1\|SQH02929.1\|1544728_1546237_-\|major-facilitator-superfamily-permease	unknown	unknown	gnl\|CDD\|129794
LS483416.1\|SQH02935.1\|1554633_1556058_-\|putative-lipoprotein	unknown	unknown	unknown
LS483416.1\|SQH02930.1\|1546343_1546907_+\|HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
LS483416.1\|SQH02926.1\|1540678_1540978_+\|putative-CRISPR-associated-protein	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.94564e-21
LS483416.1\|SQH02921.1\|1532579_1533785_+\|putative-CRISPR-associated-protein	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	8.14789e-35
LS483416.1\|SQH02934.1\|1550612_1553906_-\|1,4-alpha-glucan-branching-protein	gnl\|CDD\|200478	cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	5.32605e-83
LS483416.1\|SQH02924.1\|1538044_1539076_+\|putative-CRISPR-associated-protein	gnl\|CDD\|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.53467e-87
LS483416.1\|SQH02919.1\|1531051_1531858_+\|Abhydrolase-domain-containing-protein-6	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	1.26106e-39
LS483416.1\|SQH02936.1\|1556134_1557532_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
LS483416.1\|SQH02918.1\|1530370_1530958_-\|NADH-dehydrogenase	gnl\|CDD\|380327	cd03370, nitroreductase, uncharacterized nitroreductase family proteins. Nitroreductase family containing Thermus thermophilus NADH oxidase and other, uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	2.10343e-27
LS483416.1\|SQH02923.1\|1535358_1538040_+\|putative-CRISPR-associated-protein	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	7.88944e-84
LS483416.1\|SQH02922.1\|1533788_1535366_+\|putative-CRISPR-associated-protein	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	8.37091e-64
LS483416.1\|SQH02932.1\|1548055_1549141_+\|Inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
LS483416.1\|SQH02931.1\|1547067_1547823_+\|Fe(2+)/Mn(2+)-transporter-pcl1	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	9.1899e-88
LS483416.1\|SQH02933.1\|1549198_1550458_-\|lysozyme-M1	gnl\|CDD\|119373	cd00599, GH25_muramidase, Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.	1.50806e-65
LS483416.1\|SQH02928.1\|1543106_1544381_+\|DNA-binding-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	2.33467e-33
LS483416.1\|SQH02925.1\|1539080_1540682_+\|putative-CRISPR-associated-protein	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.06556e-98
LS483416.1\|SQH02917.1\|1529734_1530292_-\|Gamma-type-carbonic-anhydratase-like-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	2.71644e-73
LS483416.1\|SQH02929.1\|1544728_1546237_-\|major-facilitator-superfamily-permease	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.38637e-63
LS483416.1\|SQH02930.1\|1546343_1546907_+\|HTH-type-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.89558e-11

>LS483416.1|SQH02926.1|1540678_1540978_+|putative-CRISPR-associated-protein
MRRDDVRRTIIAYDIAHDRRRNKLAKILQKYGDRIQYSVFVVDCSPAKLLRLKDEIKLSINAEEDSVLYCDLGLLSKVDTTFTYEGRKQEITDNEFLII
>LS483416.1|SQH02925.1|1539080_1540682_+|putative-CRISPR-associated-protein
MQALIDPVPISLVVHTEYCERRTWLELNGEQTDTYQMQAGKSSHVHVDNLKTSTPHRQVSVKVWSDELGILGICDSLETLPDGTIRVVEFKATPVRKAPIVTDANRLQLALQGICLREMGYKKLEYAVYFTDHRKTIEVELNSADFEHAKNQALRTHEIAQASTSPIPLDEDPQCTWCSHLSVCLPDELFQRQPQRRVLAQNPDSQVLHLTEQGSRASKKNGRIEVHRKSELLGSVPIERVQAVVLHGNIDLSSALIRELAWQHRPVVWCSSTGRLYGWMLPGDGPNGLARVRQHVLAETGFIPIASEIISSKIYNQATMLRRHGSAKEAVASLRRLQETARTVNDIPSLFGVEGEAASKYFESFGSMLNDAALHSLGAQWLGRKGRGAQDHINVLLNYAYGMLTAECVRALIACGLDPHAGFLHSSNRNKPAAALDLMEEFRPVVADSVVLTLINRREIASRDFFIRDKGQALTTDGRKKIVKAFERRIQTQFKHPTFGYSVSWRRAIEVQARMMLGVLDGTQLRYKGVKIR
>LS483416.1|SQH02924.1|1538044_1539076_+|putative-CRISPR-associated-protein
MFTINIAGDASSALSHFALLGLAAVAEEMGDNSVRLMWSLDSEPKAQLRSIYDPLLIAQRIRELATRWSEDSSWVKARKDYAGKQFAPFSPRIKAIDAEKSPHDWEEHHHIRTSHVDQLLADKRWLDLSFISALGEPSYWHNEKKAPRPDHGASRWEMKTRNRGEEFVQHRLSLMVDELSSWTNEDILAGIQGKQVHDPLGKNSPDSRTSTGLTPPGPTDVALAFVGLLGIASFQLAPQVKEKSVTPGAFPPQALHPVLMVLPMSSTPISLGRARSVLRSEAIACIGGEIVRTGDIGTTAVVSASKWLLEHGINAVALFDIKKAGSSSAPERQVQPGSVLPLG
>LS483416.1|SQH02923.1|1535358_1538040_+|putative-CRISPR-associated-protein
MPSITFDAFFAELNDGHRPFAWQQRLVDAVMKTGTWPAQIVAPTGTGKSSVVDVHLYLNALYALGECPRVPRRLSVVVNRRALVDSHIDRAETILRTMQEAKAGSVLATLSQALTSLRSDAHQDPFIVSRLRGALTNKTLPVNSLEACAIIAATPDMWGSRALFRGYGSGRLARPRETALFTMDAVVLLDESHLNRQLLTTARRIAALQELEVDLHVPRLQVVAATATSTETLGLAQSIGVFEEDCERDPVIAQRIDSSKHLSLLKLKKWNGRPKNSEIIATAVEEVLRLCADADSTVGCIVNHVETATKIHRILKKKGLRSEILVGRMRPHDVAQMKARRPGLFTIQGSQEVDVLVATQTMEVGVDVDFAHLVTELAPGSSLTQRFGRVNRLGHRVRSEVSVLIPSTADAIKTDVPPYTSKDLLNSLAWLEQLAEAGTVNPRRLLELPAPEESPGRVLLQRLEWADLHNLCRTTDPLFAEPDLDLWLRDSLEKDPALGGVVVRSPLPEDFNAAVELLNATKPQDFETFPANIAVLNRLKDVLAPTDESFKQKASAVRHRAFLYRDSEVVLLDHDKPLRPTDILIIEPGTPFTTEGVASATPEDSELIDPAPLPGIDVHVFDSAMDKAEAESFKQIAAELSEDPEETPTESQRSKGFQCSTMVLETDHHHGFDAVVPWYITETDDAIRAEEEALQEWSPTSKTVTLQQHQADVAEQADNLCTSVGLHHDFHQIVVQAAAHHDDGKIEPRFQTWLRGGKTSDDQEPWAKSAQRNRQEIRRAKNISGVPPKWRHEQLSALKVAVQLGYDTPETELILRIVGCSHGHGRSTFPYSSWEMISPLATDQEQAVARHLFSEGEWDSIIERTNRTIGPYAMAYLEALQRAADAHVSSEGR
>LS483416.1|SQH02922.1|1533788_1535366_+|putative-CRISPR-associated-protein
MPKYCLTARFPLGVYLGHTGDANRDAYPDPARLHAALMNAAAQGVHAEEDPNERQLRPNQQSLQALQWLEAHPPTGLAMPEQQWLSPDISRMMYRNVGSVKIDKTGVRLNFENRAVSDGVSVNGAYGYIWDEMPVDIAEAITALLPDVACLGEASSLVVLEQQEIEATLTLDPQATAFSTERVQVRIALPGRTQHLREVFHARYGKKPPSKKADKFLKDDPIHDPPIPKDHLGTARYLRVNAADKECATPWTKVILLEVHGKQLGPEEQVRAAVALHRALIARIRTDVSPVITGRYAAGAQRPANNLAIQYIPHHHLEALGLKTSAFALLVPQDADSTVYEQLNQALTGPFPLRSGGKLLCQLKYNGHVFRGDAFWPAPQPGTIRMWEPLNVFIPESRPHNKQQGVLWRLADAGLLSVAFVWRDNFPTKETGPARYVELRDAAYNADVRIFHDHPVSRNTRRFVHRTNRSLTIQPWRGLVHLGSLQQDRAIIALGQSRHLGGGLLIPVDIPRSEFETMTSEMTHA
>LS483416.1|SQH02921.1|1532579_1533785_+|putative-CRISPR-associated-protein
MGTLSYTDLVKACSAGGSSVLTSITELEAAVGQHGSVAPAKFVNRSEPVFAFEDRFIDGESKRTVLIDSKQSQLNRAEAALMQAINEGNETLNRIPRIEVSYNDSKVFSDLELPHRFTDGHIRAGSIDGKPTTENDLYISARNSTPRNMKPLLNLAPSALIFGGWDASRKSDQVKLRSALVGEIIGVLANQNRAESYSRRGGARVDPVAASVKMTGTDLKETALVQSHELSQKTRSKLDNQVKKAKKGETVSASPLGLGAIPPSLESLGGVACQRIIRSWALSFAALRQLRFGGTAEQDIAARALLAALGLAAMARAESELNIRANCDLVEQGKPVVTLDLRYGEKRELEPISVEAADELLKEAIAKASACGVSDWEGQILHVTGNPVVLRGATEDDAEAE
>LS483416.1|SQH02920.1|1531940_1532192_-|Uncharacterised-protein
METNSVGASEEAYSMLSFAETVYGSGRILRTASLVDLCSRVVEIGEIVRVRLSRAMPRLSLRMLRQRSGRSLLLRLVLSMQRQ
>LS483416.1|SQH02919.1|1531051_1531858_+|Abhydrolase-domain-containing-protein-6
MAIIDAPLPLSARLPARGLFEDDWRARPTSRHPYPVILIHGTGVTKGDWMELGTDLRKKGYAVFAPDFGMRSTAAVAESADQVGAYIHAVLKVTGAERVILVGHSQGGILARYWMHHLDGARYVTHLICLAVPNHGTSHGGVISPLTRTARGTVVVDSIITNFFGASGFEMLAESDLIQELNANGDTLPGIYYSCITTKSDTIIQPVESCFLTGPLVRNIYVQAVSKRAIVLHEDVPHDRRVRRIVLSELERVERLTAKKHVRTEHNT
>LS483416.1|SQH02918.1|1530370_1530958_-|NADH-dehydrogenase
MSLTVAEAIANRRATRQYTEQEVSDAVLDVVVSQALQAPSAFNAQRADLVVIRDQAIKDKIFAASGQKQLRDAPVVLVTVARADVPEDLDEVLGAERAAFVRNVLAKADAARLRETALKDAMLVAGFALIAAQGEGLATSPTTGWDEAKVLEAIGLAGRSDRAVGLVIGMGYPAEFPAHPGRAESRRVNDGYARD
>LS483416.1|SQH02917.1|1529734_1530292_-|Gamma-type-carbonic-anhydratase-like-protein
MNSGPIILPFNGKTPRVHETAFIAPNATLIGDVEIAAHASVFYGCVLRADINMIRVGARTNVQDNSVLHVDGDAPCILGEDVTVGHMALVHGSTVGNGTLVGMHSALLSRSVIGAGSLIAAGAVVLEGQEIPDGSLAAGVPAQVRRVLSSEQSAGFIPHAGKYVNVASMHRELGMSLSLDQVRFS
>LS483416.1|SQH02927.1|1542337_1542637_+|Uncharacterised-protein
MKEKKLSSLVFGNVILESQILGTTIRIYADDMRSYSFRPSPYASLSVPLNELKGQLQPDHAEALAKKVFDSVAEELNKNYPGGCERAEKELKAWLMRTN
>LS483416.1|SQH02928.1|1543106_1544381_+|DNA-binding-protein
MPRYEPRFWLPADGTGLPRRDKIGGAYEAYVPDTLSDTSLVIDPELAQKSAEIERSIIALGSHKGSGHLESIARLLMRSEAISSSRIEGIAPNVDKVVLAELAQSEQVRGFKESAEAVARNLQVLRTIEESFATEPVITPGYLSRLQTELLGPRPTVPVGIRTIQNWIGGSGRTPIGAEFIPPPPEEVPALVTDLCEYANGAAHGALIQAAILHAQFETIHPFADGNGRVGRALIHGVLLRRGLTRQTMLPISLVLGTWSDAYVAGLTAYRRGDLNVWLKTFLDATQQAVHQAELIATDLQAIQEQWRSMVDDYRKTQGKTRALREDSIDFKLLTGLAAHPIVTAKTLERLYGVTASNARRALEDLEQAGVLRVKVIGVRGTAGYYADDILELITLADRQLASSRFDTRLSPPLGRGVPELPQH
>LS483416.1|SQH02929.1|1544728_1546237_-|major-facilitator-superfamily-permease
MTKTSNRWAVLTILMIGVSLIVLDSTIVSVSLPVIITSLDLSLTDAQWVSSLYSVVFAALLLFTGTLGDKFGRVLIFRIGLIVFALASLLAAVSGSAALLILARGLQGVGGAMILPSTLATINTVFRDQERARAFGIWGATMASMAAIGPLLGGWLTQSFSWHWIFLINIPIVIALLIAGHFVFGPDHKGAIVGFDVPGTLLSALALGLTVFGLIEGTSLGWWNSPVPFAIAFGLIATVLFIVLERARQRAGKPVLLDVRLFRIGSFSNGNITALTVALGEFSALFVLPLYLISVLHLGAIHAGWVLATLALGSILSGAAARHLAATFGPAVTVIIGLVLEVVGIAGAGLLIGPATSAPLIALVLAIYGAGVGLASAQLASVVLADVPVESSGMGSATQSTSRQLGSALGVAIAGTVLAIDVVRRVTEGLTNLGMTGPQAEQLAHATADSAGAAIPALAEKMRPDVGSVLSTAFADATSSVLYVSAGVLLLGLISAVRLAKR
>LS483416.1|SQH02930.1|1546343_1546907_+|HTH-type-transcriptional-regulator
MGSREENREKTQAAILDAAEALLREGGVEALTAGAVAQRVGLARNSLYRYVGSMDELRGRVILRHFPDYVDAINQAIHEATTPTEALCAYITTNVQIVAVENHGWLMELAQGVGGEAEANIAHIHRQLIKSLSNLLIPFDLDNPTLAAALIQGLLSTGFSALERGHDVQEVTALCVQGALGIVGKPQ
>LS483416.1|SQH02931.1|1547067_1547823_+|Fe(2+)/Mn(2+)-transporter-pcl1
MTFPDYTAAQPETHAQPETHKESSNRLNSRLNWLRAGVLGANDGIVSVSALILGVIATGVGHGAILAAGIAATVAGAISMALGEFVSVSAQRDSERMVMERERLELLHTPEEERHEIAKILSDYGMSEETALRAATEIGHNDPFPAHLRIEYGIDAQDLTSPWHAAFSSAAAFTLGAILPLLMVVIAPQGNSTVGVIAVSSITIIALAVTGYLSAAIAGTSRMRSVLRLVLGGTIGLALTYVAGALFGGVV
>LS483416.1|SQH02932.1|1548055_1549141_+|Inositol-3-phosphate-synthase
MSNNRTIRVAIAGVGNCASSLIQGVEYYKDADPATNVPGLMHVQFGDYHVGDIEFVAAFDVDKEKVGLDLSQAINASENCTIKICDVPEQGVTIQRGPTLDGLGKYYRQTITESDAEPVDVVGTLKDVRADVLVSYLPVGSEEADKFYAQCAIDANVAFVNALPVFIASDPEWAEKFEKAGVPIVGDDIKSQVGATITHRVLAKLFEERGVHLDRTMQLNVGGNMDFKNMLERERLESKKISKTQAVTSNLDQHIEAHDVHIGPSDYVGWLDDRKWAYVRLEGTAFGDVPLNLEYKLEVWDSPNSAGIIIDAIRAAKIAKDRRLGGPVFAASSYLMKSPPQQLRDEHARAELESFIAGDPS
>LS483416.1|SQH02933.1|1549198_1550458_-|lysozyme-M1
MFCAAIFQLGLKFFSVLRCEKAIIVTNVTYVTSGIIGRVAIMMKTRRLKTALCTVLASSTFAVASVQAIPLPFPIGASSGIDVSGHQHPNGSSINWQDVKSHGQSFAFVKATEGLGWTNDFYASDITQAAAQGLKVGSYHYARPGADARQQARHYAKVISHTPNHSLPPVLDLEVAEGKTPQELVNWTRDFVQELEKQTGRVPMIYTYRYFWIEQMANTTEFSQYPLWLAAYQAQVPGTVGGWDQIDFWQRSSSGRINGIVGDVDMNLFNGDDGELAAFAAGNLHAAGNKFASINLPELADLGKSAGGVVAVILALSAGAAAAPQLIQAAEAAGLSSEGAQDLTAVVQALAKAGKLPVDQLNKMASGNYTVGDLVILLDNAAHLAGIDAGQSSQAVMRADGLNIDANQVARVIRGLAAR
>LS483416.1|SQH02934.1|1550612_1553906_-|1,4-alpha-glucan-branching-protein
MKTYRCHARRIFTALTTLTLITAGGALSRPPAQAADPSSVVIAADFQTKAGCTKDWDPACSQTQMEKQGKFYSKKVKVPKGDWNFKVVLDGDWKTSYGAPGKGYTDDNVPLKLAADAELEFIFDPESHHIGLRPTQITTGDHEVKPEDRELIKAPYRQNAAQNNFYFVLTDRFNNGDTQNDRGDASAEQGDRAQHGFDPTSKAFYHGGDIKGIIQKLDYIQGLGTTAIWLTPSFKNKAVQGAGNDASAGYHGYWITDFTQIDPHLGTNQDMKDLIKAAHEKGMKVYFDIVTNHTADLIQLAGGNGSNGSTYVSQQEKPYKDVNGKEFRLEDYAGKDASEFPKLNEKSFPYTPQRTNPAEKMTPDWLNDVTLYHNRGNSMFDDGGESVIMGDFFGLDDLMTEHPTVVDGMTKIYNEWVDYGLDGFRIDTVKHVDLAFWKQWTERVHQHAVEKGMGDFFMFGEAYNFSPEALSPFVRETHMDAVLDFAFQNNAVDFAKGGDTNKLKSLFYGDDWYTTTRSDAAVLSTFLGNHDMGRIGSLLQNSGDGAERLRRDQLAHALLYLTRGQPVVYYGDEQGFAGSGSDKDARQDMFATKVTDVHNEQLVNGDQFGTGDHFKPDAPVAKTITELAKLRKENKALVEGAQIERYATSGAGIYAFSRVNREEKQEYLVALNNATTTREVDLNALTPNAEFERVYISSIYGNEAPTSLTTDNEAKTHVTVPGLTAVVYKVKNGKQVTGSVSGGLNIVGQELKGDAPIMTTVGGNAWSETNFGWRKLGEKEWNYLGTDTGQDARIFHNVRDLEPGTVVEYRTVTVDGDNKETASHGWGVVGVDLAVDSRALSVSATTASATVPAAVVAGNFTKDLGCTGGQEGNWDPTCAAAELRDDSSGWKTAELTLKPGEYEYKIATGGSWDQSYGALSEGTRESDEGIPDGKNVKFQVTQDKQKVTFFYHPETHEFFNTAEHRVITLPGTMGGALECPANVEKSDAYGNWGPACLATMLTRTGAHTYGTRLPKVPTPGDYQLKVAYDRDWQESYGPDGRGDSNYLVTVAESGKVLSYKWDEQTKKLTWTTSDQGASLVEDAAMPTELEESVALEN
>LS483416.1|SQH02935.1|1554633_1556058_-|putative-lipoprotein
MRKLTMAILCSTALALGACGSTGKAGAPSNALSIEQTTQIDSADGIDASKLLFSSSASVVIAGGSVGQKWEGAKEAVKRGAPLLVRTADNASAIDAEIKRLGAQDVITIDEPQTLDPEISEANIADKISQLTPESPLFDGGASILVSGHTTAADVATARASGAKVEYLSSGDARESSTLSADPDAHVVALGPSFANKERFNRQVEMINYGEVPGGGHLIFPSHRVVALYGHPSGGALGVLGEQPAEEAVNRVNDLVGKYQAIDPEESVIPAFEIIATVASSSAGPDGNYSNEGNVDELRPWVKAIGDAGGIAILDLQPGSASFLEQAQQFEELLKLPHVGLAIDPEWRLKPGEKPMERVGSVGAGEVNQTAAWLRDLVKDNELPQKVFVVHQFQHQMVQDRETLDTTAPELSWVLHADGHGTAGDKFATWDMVRKNLQPEFYLAWKNFIDEDQPMFTPEQTFKIEPRPWFVSYQ
>LS483416.1|SQH02936.1|1556134_1557532_-|AMP-nucleosidase
MGADVVQQLEDIYAASISLAKEILETGEYERYCDVVYPKLIVKIVSWHPVDRTEPFGYVDAAGCYSAVLSKPELIHDYLCEQLERLCANYECVITVEPSTVRIPPEYIDGIEGVTEARRAGDVAAEIPRPTLDDVDDAIIDGEWDAFHGEEKPLFHFTPQRFDIACARIQHYTGISPASVQKYILFTNYAMHAREFVNFGLCELSREGSRYSALLLPDGHKITRDQAENIDRESLSLESRFQMPRYDLVAEDGMGITMINIGVGPSNAKTITDCLAVLRPEAWVMIGHCAGLDGRMRLGDLILGNAYQRDDHLLDDHIPLDLPIPAVPEVQRALETSVRDVYGEDLSMMRTGTVLSTDDRNWEWHTPQKLWKLLRGSTAAACDMESATLAANGYRYRIPYGTLLSVSDLPLHAVPKLPAAAQTFYANSKQAHVMCAVHAVELLALTPEKLRTRKLRRTIGEVPFR

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Crispr_ID: LS483416_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483416_2

1622137-1622836

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	PILER-CR
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CRISPRCasFinder
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CRT

11 spacers

cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of LS483416_2

>merge|LS483416|2|1622137-1622836|PILER-CR,CRISPRCasFinder,CRT
CTTTTCTCCGCGTATGCGGAGGTAGTTCCGCTCAGGGGCTAAGGCCCGCGCGGAATTGCTCCTTTTCTCCGCGTATGCGGAGGTAGTTCCCACCAGCTGATGATTCTTTTCGCCCCACACGTCTTTTCTCCGCGTATGCGGAGGTAGTTCCTGCCGTTGTCGCCGGCGAATCACAAAGATATTCTTTTCTCCGCGTATGCGGAGGTAGTTCCGGCACTGCCGTCCAGCTGATCCTGCGCAAAGTCTTTTCTCCGCGTATGCGGAGGTAGTTCCACCGGTGGAGGAATGGCGCGAGGCTATGGCCGCTTTTCTCCGCGTATGCGGAGGTAGTTCCGTGAATACGCTGATCGTACCGTTTATGAGCTTCTTTTCTCCGCGTATGCGGAGGTAGTTCCAGTCGCCGCTGTCGGTCATGTTGGTGATGATCCTTTTCTCCGCGTATGCGGAGGTAGTTCCTCGACGAATACGAGTGGGGATATACCGATGAGCTTTTCTCCGCGTATGCGGAGGTAGTTCCATCATCGTCTGGCCAGTAGCCCCCGTCCACCACTTTTCTCCGCGTATGCGGAGGTAGTTCCCTCGGCCCCCGCGTGGGGACCTTCAGCCCCGACTTTTCTCCGCGTATGCGGAGGTAGTTCCGGTAATTAGCTGGTCAATCAGTGTTTCTAGATCTTTTCTCCGCGTATGCGGAGGTAGTTCC

>LS483416|2|3|1622137-1622836|PILER-CR
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GCTCAGGGGCTAAGGCCCGCGCGGAATTGCTC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CACCAGCTGATGATTCTTTTCGCCCCACACGT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TGCCGTTGTCGCCGGCGAATCACAAAGATATT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GGCACTGCCGTCCAGCTGATCCTGCGCAAAGT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ACCGGTGGAGGAATGGCGCGAGGCTATGGCCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GTGAATACGCTGATCGTACCGTTTATGAGCTT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGTCGCCGCTGTCGGTCATGTTGGTGATGATC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCGACGAATACGAGTGGGGATATACCGATGAG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATCATCGTCTGGCCAGTAGCCCCCGTCCACCA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTCGGCCCCCGCGTGGGGACCTTCAGCCCCGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GGTAATTAGCTGGTCAATCAGTGTTTCTAGAT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC

>LS483416|2|2|1622137-1622836|CRISPRCasFinder
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GCTCAGGGGCTAAGGCCCGCGCGGAATTGCTC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CACCAGCTGATGATTCTTTTCGCCCCACACGT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TGCCGTTGTCGCCGGCGAATCACAAAGATATT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GGCACTGCCGTCCAGCTGATCCTGCGCAAAGT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ACCGGTGGAGGAATGGCGCGAGGCTATGGCCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GTGAATACGCTGATCGTACCGTTTATGAGCTT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGTCGCCGCTGTCGGTCATGTTGGTGATGATC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCGACGAATACGAGTGGGGATATACCGATGAG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATCATCGTCTGGCCAGTAGCCCCCGTCCACCA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTCGGCCCCCGCGTGGGGACCTTCAGCCCCGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GGTAATTAGCTGGTCAATCAGTGTTTCTAGAT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC

>LS483416|2|2|1622137-1622836|CRT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GCTCAGGGGCTAAGGCCCGCGCGGAATTGCTC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CACCAGCTGATGATTCTTTTCGCCCCACACGT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TGCCGTTGTCGCCGGCGAATCACAAAGATATT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GGCACTGCCGTCCAGCTGATCCTGCGCAAAGT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ACCGGTGGAGGAATGGCGCGAGGCTATGGCCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GTGAATACGCTGATCGTACCGTTTATGAGCTT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGTCGCCGCTGTCGGTCATGTTGGTGATGATC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCGACGAATACGAGTGGGGATATACCGATGAG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATCATCGTCTGGCCAGTAGCCCCCGTCCACCA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTCGGCCCCCGCGTGGGGACCTTCAGCCCCGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GGTAATTAGCTGGTCAATCAGTGTTTCTAGAT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC

Protein	Signature genes	Signature genes Name	Protein_function
LS483416.1\|SQH02994.1\|1612301_1613105_+\|transposase-for-insertion-squeence-element	unknown	unknown	unknown
LS483416.1\|SQH03005.1\|1623667_1624054_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483416.1\|SQH03002.1\|1621746_1622118_+\|CRISPR-associated-protein	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
LS483416.1\|SQH03006.1\|1624128_1626057_-\|putative-secreted-LPxTG-protein	unknown	unknown	gnl\|CDD\|380076
LS483416.1\|SQH03001.1\|1620792_1621746_+\|CRISPR-associated-protein	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LS483416.1\|SQH03004.1\|1623133_1623631_+\|repressor-like-immunity-protein	unknown	unknown	gnl\|CDD\|259851
LS483416.1\|SQH03010.1\|1629331_1630105_-\|Ribose-import-ATP-binding-protein-RbsA	unknown	unknown	gnl\|CDD\|224053
LS483416.1\|SQH03008.1\|1627929_1628466_-\|peptidyl-prolyl-cis-trans-isomerase-A	unknown	unknown	gnl\|CDD\|223725
LS483416.1\|SQH03007.1\|1627105_1627846_-\|rhomboid-family-protein	unknown	unknown	gnl\|CDD\|366759
LS483416.1\|SQH03013.1\|1632818_1633346_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483416.1\|SQH02997.1\|1614952_1615507_-\|putative-CRISPR-associated-protein	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl\|CDD\|274193
LS483416.1\|SQH02993.1\|1610732_1611656_-\|phospholipase-D	unknown	unknown	gnl\|CDD\|176518
LS483416.1\|SQH03012.1\|1631184_1632186_-\|Periplasmic-binding-protein/LacI-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380535
LS483416.1\|SQH03000.1\|1618102_1620796_+\|putative-CRISPR-associated-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
LS483416.1\|SQH02998.1\|1615542_1617156_-\|putative-CRISPR-associated-protein	cas8e	cls000721_cas8e_CAS-I-E	unknown
LS483416.1\|SQH03011.1\|1630105_1631188_-\|Ribose-transport-system-permease-protein-rbsC	unknown	unknown	gnl\|CDD\|224093
LS483416.1\|SQH02996.1\|1613885_1614953_-\|putative-CRISPR-associated-protein	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
LS483416.1\|SQH03009.1\|1628542_1629247_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|172341
LS483416.1\|SQH02999.1\|1617371_1618082_+\|putative-CRISPR-associated-protein	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
LS483416.1\|SQH02995.1\|1613181_1613874_-\|CRISPR-associated-protein-Cas5	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776

Protein	Function_ID	Function_description	E-value
LS483416.1\|SQH03002.1\|1621746_1622118_+\|CRISPR-associated-protein	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	4.43674e-21
LS483416.1\|SQH03001.1\|1620792_1621746_+\|CRISPR-associated-protein	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.27245e-70
LS483416.1\|SQH03006.1\|1624128_1626057_-\|putative-secreted-LPxTG-protein	gnl\|CDD\|380076	pfam17961, Big_8, Bacterial Ig domain. This entry represents a bacterial Ig-fold domain that is found in a wide range of bacterial cell surface adherence proteins.	2.07937e-10
LS483416.1\|SQH03004.1\|1623133_1623631_+\|repressor-like-immunity-protein	gnl\|CDD\|259851	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins. This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain.	0.00197651
LS483416.1\|SQH03010.1\|1629331_1630105_-\|Ribose-import-ATP-binding-protein-RbsA	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	2.56568e-102
LS483416.1\|SQH03008.1\|1627929_1628466_-\|peptidyl-prolyl-cis-trans-isomerase-A	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	7.27218e-66
LS483416.1\|SQH03007.1\|1627105_1627846_-\|rhomboid-family-protein	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	2.48429e-21
LS483416.1\|SQH02997.1\|1614952_1615507_-\|putative-CRISPR-associated-protein	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.15361e-07
LS483416.1\|SQH02993.1\|1610732_1611656_-\|phospholipase-D	gnl\|CDD\|176518	cd08576, GDPD_like_SMaseD_PLD, Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline and lysophosphatidic acid (LPA), which is a multifunctional phospholipid involved in platelet aggregation, endothelial hyperpermeability, and pro-inflammatory responses. Loxosceles spider venoms' SMases D are the principal toxins responsible for dermonecrosis and complement dependent haemolysis induced by spider venom. Due to amino acid substitutions at the entrance to the active-site pocket, some members lack activity. The typical GDPD domain consists of a TIM barrel and a small insertion domain named as the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. Although proteins in this family contain a non-typical GDPD domain which lacks the GDPD-I, their catalytic mechanisms are based on Mg2+-dependent acid-base reactions similar to GDPD proteins. They might be divergent members of the GDPD family. Moreover, this family does not belong to phospholipase D (PLD) superfamily, since it lacks the conserved HKD sequence motif that characterizes the catalytic center of the PLD superfamily. It belongs to the superfamily of PLC-like phosphodiesterases.	1.09119e-86
LS483416.1\|SQH03012.1\|1631184_1632186_-\|Periplasmic-binding-protein/LacI-transcriptional-regulator	gnl\|CDD\|380535	cd06312, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	4.76861e-86
LS483416.1\|SQH03000.1\|1618102_1620796_+\|putative-CRISPR-associated-protein	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.95203e-53
LS483416.1\|SQH03011.1\|1630105_1631188_-\|Ribose-transport-system-permease-protein-rbsC	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.58274e-61
LS483416.1\|SQH02996.1\|1613885_1614953_-\|putative-CRISPR-associated-protein	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.8369e-81
LS483416.1\|SQH03009.1\|1628542_1629247_+\|Uncharacterised-protein	gnl\|CDD\|172341	PRK13808, PRK13808, adenylate kinase; Provisional.	0.00724347
LS483416.1\|SQH02999.1\|1617371_1618082_+\|putative-CRISPR-associated-protein	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.09636e-33
LS483416.1\|SQH02995.1\|1613181_1613874_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.55719e-27

>LS483416.1|SQH03002.1|1621746_1622118_+|CRISPR-associated-protein
MFAVIQGHNLPNHLNGYLSRFLSEVDAGLYVGVLSRTVMENLWEKCQSVDLAGSLTLIHPQYDAEQGFRIRTTGKQRRPVVDLDGLFLSARGLIEDVRFADPLDEADAIIPDEVLEDFCPESE
>LS483416.1|SQH03001.1|1620792_1621746_+|CRISPR-associated-protein
MSYSNEALAFSTIPASEQIRLEDRVSFLYLEYCLIRQDRTGVIAVSRGDEKAPAELKDLPIKARIQLPVGGLAVLMLGPGTSISQPAATSCARAGVSVLFTGGGGVQAYSLSTPLTSSARWAIAQARLASNEAKQRTAARILYKRQLGIEEIEADSIAVMRGIEGRTIRNLYKRLSAQHKIKNFKRDTNATDPVNTNLNLGNSILYGCAASACAALGINPALGIIHRGDIRSLLFDLADLYKPTLTIPAAFKCANNDDDGSEFRRLVRSEIVNQDRLKNMIHIMMEILTPHLPERTDDRLIGGRNHEVPGHTQYGGK
>LS483416.1|SQH03000.1|1618102_1620796_+|putative-CRISPR-associated-protein
MTNAVANHHVLWAKFDNVSEPYPLLAHLLDTATAATCLFNHWLRKGLRDRLSTELGPDAEKILGFVAGIHDLGKANPYFQAQRRNKKEEWITLRDAIQKAGFPLSNGTSALFEETKEKRRHENITLSILGWEITKFLQVKDVWPQLAIIGHHGNFSAPGFLSDEDDLEDIEDIFDDNGWSPTHELLVSSLLQAVGLEKQPEIKHISPASAILISGLVVLADRIASQSEMASDGLQALQKEELFFHQPEKWIANRKAFCREIIENTVGTYHPWESEAAGIRAVLGDYEPRFTQKAALNAGDGLFNVMETTGAGKTETALLRHVKRKERLLFFLPTQATTNAIMERIGKIFDGTPNVASLAHGLAVTEDFYAHPIVPVQGSSDDANYKDNGGLYPTEFVRSAGTPRLLAPVCVGTIDQALMGALPSKFNHLRLLALANAHVVVDEVHTMDQYQSELMSGLLEWWSATDTPVTLLTATMPAWQREKFHLSYTGKEPHFKGVFPSLEGWSTPSKNTETSQENIPIEAFTIPIHIDKIAHNEIVDSHVQWAIKQRKLFPQARIGIICNTVGRAQSIAEALAHESPIVLHSRMTAGHRKEAATKLEQAIGKKGTATATLVIGTQAIEASLDIDLDLLRTELCPAPSLIQRAGRLWRRLDPQREVRVPGMVGKKLTIAVVDSPSTGQTLPYLRSQLYRVESWLKQRDRIEFPADIQDFIDATTPGLQELFQKVSLPEDCGSAEERETLADDYLNEVASWVTKQRQAGTSRIDFAKHGKPRQVLASDCVVEDFLQITSANDLEESATRLIDCSSISAILCDPTGTIPGAWTDSVEKLIAIPAEDRESLRRALRASISIPQSKKFLPITSREIPLSEAKTLLSGYSAVHIQPDEYDLQSGLKGPQK
>LS483416.1|SQH02999.1|1617371_1618082_+|putative-CRISPR-associated-protein
MPNTIYWTHFPAHIALNKSLVLGDSAAQDSKNKPRWDVDDPVFRHRAVMALFPKHQSDNARTDSNILFRLEILPGQEPYFFVQSSIEPSNRNLDNHIKIRQVDLVSPEAGTPIEFRLSINAVRRKTIDATENTKRKIKTTCLSLKALDSDPTETAAGQWVKEKLSPALENIDIVRHGRQVLGANRNGEKTSNRTVQVDTIDGFAHVKDPAELQKILIHGIGRAKSYGCGMLTFRPI
>LS483416.1|SQH02998.1|1615542_1617156_-|putative-CRISPR-associated-protein
MKSNVFKDFPFVKTNKGPMTVEEFFHSSHEESLHLDLSIPGYEYGAIWRLLASLTAVIVQRDPSLLEEVESGSELSLDPEFISQILDDLGSKISLTEGKNLFFQRPLLEGENPKDTARYVGPGKDPAWKLSPTAPSEKSQIYWNLEKLKPESLEAVDAIVALMVFSMYSFTGNSKYDGAKCLNGSPGIRFLGGGNTATEFIIESKTPLLSLLKSIPLEWCEPGGLPAWLDRTGAESRKPNGEMHPLWRATWSSNTAACCWDGETLIGVGIGGIPPEWYALEMGSKPEARKEWWDQRNTEDPFYFYQPDKGGALKAKRLDLSRDLTELAVEWVAEDLSTALDERVRGRALRVDFKKEDSLLFIRHQIGGNASSAMIRESVVSQARKQQWVFDPTGALQKQVRGKADFMLSLRNIVLSPFRRENKSDRDRGRRVLDNLASERPKMNETFWREIAPIYEEFILYFTEQVSGDETRKEVRAQAKKTLKELEKDAVRTAQKAFDMVLEPYLLQNPSQAYEVRRRIHSYLASTIAEANEGDQK
>LS483416.1|SQH02997.1|1614952_1615507_-|putative-CRISPR-associated-protein
MAEFAQRKKDKEFRAKRSALRAGSGIYTEFRAYSYVLPFLGEKASEAQRTALLRCMAALAEYPDIVSSGEKATASSVSQWVNRVAFDGKQGQSEPDSMVASRIKYLHTQDLEEAISSLRRIMAFADRKNMAIKLNPYQFVELFWYWGNGFTDASTKHRLSVLRDFYSTKQKENTDPQSSSEGEK
>LS483416.1|SQH02996.1|1613885_1614953_-|putative-CRISPR-associated-protein
MSRHLTIHVVASVPYSNLNRDDSGTPKNVRRGGVTCALLSSQSIKKGIRTKYEDASLDTSVRSGRIADDVLERAKVLAPEADTKALEKAVKKIIGTLTKVAEANESEGESDRSIWLSAEELEAAAVSVVEQAEKKDFIEDGRTGSLAIAAFGRMFAAAPQKGTEAALSVSPAVTTHGVTIATDYFSTVDDIRERNRDTGATYLGVSQYTTGVFYRTVTIDKEQLRESWTGLDREDAKENLAALVNAIIYGLPRGKQHSTAPFVQPALILAEEQSYRCAYDFESPVQADTREGGYLKPTLEELKRQYDSARAFDADNFGETQVVSGTYPEVSEFFAGAKYADKNGFIDEVVAWIQR
>LS483416.1|SQH02995.1|1613181_1613874_-|CRISPR-associated-protein-Cas5
MTTTSVYLRLAGPLQSWAGPAVTGNFVRTGPIPTHSALVGLIAGACGYRRDEWPDWLNRLNFRVRVDHPGKFVDDFQTVSAHEEEMLFRERLILATGKRPSAKTTRLTPDGRGMTSIIQRTYLAEAEFIVEVASDTHGELLRDALRAPKFSTYLGRKAFAPAFPFYLGATTDVDVLHRIPACDLSGAKRDTARVQIHHCSAELHTSAEHINVPAVQERSDWLEKTKVLFA
>LS483416.1|SQH02994.1|1612301_1613105_+|transposase-for-insertion-squeence-element
MSWCWQVPVPQPYMEDKACILVMNEGTFFQSWCLVVAYNSTHVLGWQWVSKDDKTTCVQVYTYFPRPSAAVISGDESTAQAIQSLWPGIPMRRCLSSIKESVNQKISHTSHTQPAIEIKNLTDSLSYVYTSEQAQLWLDRYNTWETTWKELLKHRTDSPNTNHNENSCGWQWTYKELRSIRLMYRTLIKKEELFFQFTAPAIPLSDTALPCQTSLLGDDLSADIKKLFHTHRGINHEHARRMVEWYLNSKTESPFIPERIIKHDHWE
>LS483416.1|SQH02993.1|1610732_1611656_-|phospholipase-D
MKKKVVLFLSIIMGILLPVGNAVATPVSHDAASTGNRPVYAIAHRVLTTQGVDDAVAIGANALEIDFTAWRGGWWADHDGIPTSAGATAEAIFKHIAEKRKQGANITFTWLDIKNPDYCTDPDSVCSINALRDLARKYLEPAGVRVLYGFYKTVGGPGWKTITSDLRDKEAVALSGPTRDVLNDFAKAGDKILTKQKIADYGYYDINQGFGNCYGDGNKTCDQLRKSSEARDQGQLGKTFGWTITTGQDDRVNDLLGKAHVDGMIFGFKVTHFYRHADTENSFKAIKTWVDKHSDTHHLATAADNPW
>LS483416.1|SQH03004.1|1623133_1623631_+|repressor-like-immunity-protein
MVITPEEVMHLMGKGMTQSQIAREYGVTRQYIFTLAKRGGHQASEQEYIKDDLPWANVPDKHFNNTILSGLRIHARYMERGQEGLRGSSCVKLLSMYRKLVRFNQVIDYNESYPPVKGLSNTGGFMYVPRSPEDGNLIIKMKPSVRITKRGARIWQLPKKFPEKQ
>LS483416.1|SQH03005.1|1623667_1624054_+|Uncharacterised-protein
MTNTFTALTERGEGWWVIQLKEDPGLLTQTRRLDQIPDMVRDALELFPELTDDPYKDIVNIEFREGESIADIANQAVQANQAAKQAQEEASQLMRQAAAELSKKGLSYRDIGTLLGVSFQRAQKLATT
>LS483416.1|SQH03006.1|1624128_1626057_-|putative-secreted-LPxTG-protein
MENMSFPARSQRAGKLLCVVACAIALVSSLMMFATGQPLARAEAVCSGGDWSDLTWKDEHSNPSLRDNTYHGPGSHAEVQFEWKAKADAKQGDKITFTLPPQLQGVDTGSILLQDSKNELVARGSWDSGRKSFVITLEQFANTHFNVQGTAFVSAKWNRDGIDGDPKKFEGALNFNGCGSGSLNGKYEEGSEGDSHETSKIGEYRGYDSVNKVHKVQWTVGLSGKTGNGQRVLVTDNAPAGWNFACDGKYNDGYAPVYVSSFTKGDPSGERRHQIFNAQNSDTGGMRYGFGDSIKNDDGFLAGYSYKLNCTPQQVSVELPYGISPESSPLISLLTISTEKPALGSTIYNTAEVNGKNISGSVTFPSAGGQGRGSKGGFTIEKIVSGEHTSKQFSFEWSCTSQSKETKSGTIKLANGDVHHEKQLDKGASCVIKEEDADAASEKKHSLKWSVDGEDKEGESVAISIRQPEEQAVQVVATNIYYQEEPEIPPVPPTTTSSSSPSTTASTETTTKTTTTTTTATKTTEPSATTTTSAPPSAPRTTEPTRTPRNPLLPIPIPIPIPLPPAPPVTTTVTPHAPAPVPPPATPSIASSKPVDAAPQPPAKRLLARTGASVAGLVIPALFLMIGGMGLLMIIRRKRNSE
>LS483416.1|SQH03007.1|1627105_1627846_-|rhomboid-family-protein
MSAQRTVRAAYNQAPATVILSLSTLIIFLITAVQSRSITDNLYDSWLGDHWILYTPQMHDPLGMLRAIGSMFLHIGPAHLAINLFLLFFLGREVEQFTGSAFFSAAYFISGLGASLTIMILDPLSPTAGASGAIYGLMAIMVAIAITRKTDIRAPLILVAVNVGYSLITDNVSLWGHIGGLIAGAIVALPLMAAHRSHSASGGFLAYAAPRTHRHSLRRQLITWLIVAAIAACEVIGIWVAGTRLL
>LS483416.1|SQH03008.1|1627929_1628466_-|peptidyl-prolyl-cis-trans-isomerase-A
MMVRMTLKTATAILHTNRGDVAIELFGNHAPKTVENFVTLADGSADYKTENASGTAEGPFYDGAVFHRVIDGFMIQGGDPTGTGRGGPGYMFADEFHPELQFDRPFLLAMANAGPGTNGSQFFITVVPTPHLNNHHTIFGEVTDPASQKVVMDIAQTATDRMDRPVEPVVIESVEITE
>LS483416.1|SQH03009.1|1628542_1629247_+|Uncharacterised-protein
MNSSTIRGAVLVTKAAYDKYASYRDRKTREAYDALLNAADSYDDVRKEVKSNVTDLYDQSQERVSSLTAQARKRLDSAIADAAAAKDDTVKTVNKKASKASKSLSKQSKKAQKAARKAAQSAKKSATPKKQPSFGKRLFNFSLFTTLLAAVGAVVYYFLSKRDVVSTEPPRVEDFGADSVNTQESRLVYSTHTPVDGEEEHVASPEEGATERDEELLGSLENQLKQHTDSQEDK
>LS483416.1|SQH03010.1|1629331_1630105_-|Ribose-import-ATP-binding-protein-RbsA
MDTSTTPIIELRDITKSYGAFDALRGVNLSVAPGEVTCVLGDNGAGKSTLIKILSGLHKQTSGELLIDDQPVTFNSPREALDHGIATVHQNLAVVGQMSVWRNFFLGQELTGFLGRLREEEMHSIAQEQLKAMGIDLPDIDVDVESLSGGQRQVVAIARAVYFGARVIILDEPTAALGVKQSGMVLRFVAAARDKGIGVVLITHNPHHAYLVGDRFTILNLGNQILNASRDQVTLEQLTQQMAGGGELEALSHELSR
>LS483416.1|SQH03011.1|1630105_1631188_-|Ribose-transport-system-permease-protein-rbsC
MITPPTSESATAGTADIGTATQGDDRLRRRTGLSALIRRPEFASLLGAVAIFVLFLSVAPSFRSIDALTTVLYASSTLGIVAVAVGLLMIGNEFDLSSGVAVTTAALAATMLNYNLHLNSWVGACMSLFIALAIGALNGYLVTKTGIDSFLITLAAFLMLQGLNLAITKLVTSQVATPSIADMEGFPSAQKVFAGTVHIGSVSVRATVFWWIFFVAAGSWLLFKTRFGNWIFAVGGDADAARASGVPVARVKIILFMFVGFAAWFVGMHNLFTFDSIQAGQGVGNEFLYIIAAVIGGCAMTGGRGTIIGTAIGALIFGMTNQGIVYAGWNPDWFKFFLGAMLLFAVLTNTSFATLTKGRK
>LS483416.1|SQH03012.1|1631184_1632186_-|Periplasmic-binding-protein/LacI-transcriptional-regulator
MKNLRFPLRAAVVTLAASVVLSACSATGGAPRSSNTSGGQAGGVDTPRYVVAMVTHGAPGDTFWDLVRKGAEDAAKKNNMELRYSSDPEAPNQSNLIQNAIDSKVDGIAVTMPNAEAIGPAAKKAVTAKIPTVALNAGMDAYQKYDISAFFGQEEKVAGTLAGKRLAQDGAKHALCVIHEQGNSSQEARCAGLKEGLAGADMEVLYVNGKDMTSVQSTVQAKLAQDKSIDWVMGLVAPVALTSVDAVKNSGSSAKISTFDTNAQLVTAIKEGTVQWAVDQQPYLQGYMAIDALWLAQRNGSTVGGNRPVYTGPSFVDATNVDKIADSAKAGLR
>LS483416.1|SQH03013.1|1632818_1633346_-|Uncharacterised-protein
MSSNKNVALRNLAVAAGATALGLGAVFGTAGAAMAADEPAAPPAVNAEKPAPTIEQDIPVDVEEPDVLDLDDASDVETPDADDLDDVLKYEPTTVAAGHTAYADIKGDVDDDTIFGYSQKDIPEGWFVSVDEKTGKVSVSASPDAKPGDTYTVKVKIIDLDGKVTWAEAPFTVGE

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Crispr_ID: LS483416_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483416_3

2205610-2206677

Orphan

I-C,I-E,II-B

Consensus_repeat	Method
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	PILER-CR
GGAACTACCTCCGCATACGCGGAGAAAAG	CRISPRCasFinder
GGAACTACCTCCGCATACGCGGAGAAAAG	CRT

17 spacers

DinG

The CRISPR arrays of LS483416_3

>merge|LS483416|3|2205610-2206677|PILER-CR,CRISPRCasFinder,CRT
GGAACTACCTCCGCATACGCGGAGAAAAGCCCGGGTGCGAAAGCTGGTTCCAATGATCCGATGAACTACCTCCGCATACGCGGAGAAAAGACTGCAACGGTGGGGCGTTGCGACGAAAGTAAGGAACTACCTCCGCATACGCGGAGAAAAGCTATATCCTCACGCACACGATCCAATTTGCGCTGGAACTACCTCCGCATACGCGGAGAAAAGGGGACCGCACTACAGCCCGTCCCTGTGGGCTGGGAACTACCTCCGCATACGCGGAGAAAAGTCGGTGAATCCATCGGTGAGCACTTTCTCCCAGGAACTACCTCCGCATACGCGGAGAAAAGAAATCGACTACATCTTGAGCCTCTGGAACAAAGGAACTACCTCCGCATACGCGGAGAAAAGACTTACTTCCCACCTACTCACCACGGTGGGAAGGAACTACCTCCGCATACGCGGAGAAAAGAACCCACGGTCCTGGTGTTGAGTCGTCGAGCAGGAACTACCTCCGCATACGCGGAGAAAAGTGCTGATATGACACCCGCGCAGCGTTTCGAGTGGAACTACCTCCGCATACGCGGAGAAAAGTCGCAGATTCCCTGATGGGAACGATCCTGAGTGGAACTACCTCCGCATACGCGGAGAAAAGATTACGCCCATGGCTATCCCTTTAACGATGGCGGAACTACCTCCGCATACGCGGAGAAAAGTGGCCACAGCACCTGCACCAAAAAACTGTGACGGAACTACCTCCGCATACGCGGAGAAAAGTGATCGACACTAACGGTAATGATCTTGATGAAGGAACTACCTCCGCATACGCGGAGAAAAGGCGATGTTGATGGGGAACTCATTGAAACTTTGGGAACTACCTCCGCATACGCGGAGAAAAGGGCAACACAACTTCCACAGTGCGGGCCTGGCGGGAACTACCTCCGCATACGCGGAGAAAAGCGCGTGGAATCAGCTGGGTGAGAACGCCGCACAGGAACTACCTCCGCATACGCGGAGAAAAGCAAGAAGGCTGGGCCTGGGTTGATTCCAACGTGGAACTACCTCCGCATACGCGGAGAAAAG

>LS483416|3|4|2205610-2206677|PILER-CR
GGAACTACCTCCGCATACGCGGAGAAAAG	CCCGGGTGCGAAAGCTGGTTCCAATGATCCGA
TGAACTACCTCCGCATACGCGGAGAAAAG	ACTGCAACGGTGGGGCGTTGCGACGAAAGTAA
GGAACTACCTCCGCATACGCGGAGAAAAG	CTATATCCTCACGCACACGATCCAATTTGCGCT
GGAACTACCTCCGCATACGCGGAGAAAAG	GGGACCGCACTACAGCCCGTCCCTGTGGGCTG
GGAACTACCTCCGCATACGCGGAGAAAAG	TCGGTGAATCCATCGGTGAGCACTTTCTCCCA
GGAACTACCTCCGCATACGCGGAGAAAAG	AAATCGACTACATCTTGAGCCTCTGGAACAAA
GGAACTACCTCCGCATACGCGGAGAAAAG	ACTTACTTCCCACCTACTCACCACGGTGGGAA
GGAACTACCTCCGCATACGCGGAGAAAAG	AACCCACGGTCCTGGTGTTGAGTCGTCGAGCA
GGAACTACCTCCGCATACGCGGAGAAAAG	TGCTGATATGACACCCGCGCAGCGTTTCGAGT
GGAACTACCTCCGCATACGCGGAGAAAAG	TCGCAGATTCCCTGATGGGAACGATCCTGAGT
GGAACTACCTCCGCATACGCGGAGAAAAG	ATTACGCCCATGGCTATCCCTTTAACGATGGC
GGAACTACCTCCGCATACGCGGAGAAAAG	TGGCCACAGCACCTGCACCAAAAAACTGTGAC
GGAACTACCTCCGCATACGCGGAGAAAAG	TGATCGACACTAACGGTAATGATCTTGATGAA
GGAACTACCTCCGCATACGCGGAGAAAAG	GCGATGTTGATGGGGAACTCATTGAAACTTTG
GGAACTACCTCCGCATACGCGGAGAAAAG	GGCAACACAACTTCCACAGTGCGGGCCTGGCG
GGAACTACCTCCGCATACGCGGAGAAAAG	CGCGTGGAATCAGCTGGGTGAGAACGCCGCACA
GGAACTACCTCCGCATACGCGGAGAAAAG	CAAGAAGGCTGGGCCTGGGTTGATTCCAACGT
GGAACTACCTCCGCATACGCGGAGAAAAG

>LS483416|3|3|2205610-2206677|CRISPRCasFinder
GGAACTACCTCCGCATACGCGGAGAAAAG	CCCGGGTGCGAAAGCTGGTTCCAATGATCCGA
TGAACTACCTCCGCATACGCGGAGAAAAG	ACTGCAACGGTGGGGCGTTGCGACGAAAGTAA
GGAACTACCTCCGCATACGCGGAGAAAAG	CTATATCCTCACGCACACGATCCAATTTGCGCT
GGAACTACCTCCGCATACGCGGAGAAAAG	GGGACCGCACTACAGCCCGTCCCTGTGGGCTG
GGAACTACCTCCGCATACGCGGAGAAAAG	TCGGTGAATCCATCGGTGAGCACTTTCTCCCA
GGAACTACCTCCGCATACGCGGAGAAAAG	AAATCGACTACATCTTGAGCCTCTGGAACAAA
GGAACTACCTCCGCATACGCGGAGAAAAG	ACTTACTTCCCACCTACTCACCACGGTGGGAA
GGAACTACCTCCGCATACGCGGAGAAAAG	AACCCACGGTCCTGGTGTTGAGTCGTCGAGCA
GGAACTACCTCCGCATACGCGGAGAAAAG	TGCTGATATGACACCCGCGCAGCGTTTCGAGT
GGAACTACCTCCGCATACGCGGAGAAAAG	TCGCAGATTCCCTGATGGGAACGATCCTGAGT
GGAACTACCTCCGCATACGCGGAGAAAAG	ATTACGCCCATGGCTATCCCTTTAACGATGGC
GGAACTACCTCCGCATACGCGGAGAAAAG	TGGCCACAGCACCTGCACCAAAAAACTGTGAC
GGAACTACCTCCGCATACGCGGAGAAAAG	TGATCGACACTAACGGTAATGATCTTGATGAA
GGAACTACCTCCGCATACGCGGAGAAAAG	GCGATGTTGATGGGGAACTCATTGAAACTTTG
GGAACTACCTCCGCATACGCGGAGAAAAG	GGCAACACAACTTCCACAGTGCGGGCCTGGCG
GGAACTACCTCCGCATACGCGGAGAAAAG	CGCGTGGAATCAGCTGGGTGAGAACGCCGCACA
GGAACTACCTCCGCATACGCGGAGAAAAG	CAAGAAGGCTGGGCCTGGGTTGATTCCAACGT
GGAACTACCTCCGCATACGCGGAGAAAAG

>LS483416|3|3|2205610-2206677|CRT
GGAACTACCTCCGCATACGCGGAGAAAAG	CCCGGGTGCGAAAGCTGGTTCCAATGATCCGA
TGAACTACCTCCGCATACGCGGAGAAAAG	ACTGCAACGGTGGGGCGTTGCGACGAAAGTAA
GGAACTACCTCCGCATACGCGGAGAAAAG	CTATATCCTCACGCACACGATCCAATTTGCGCT
GGAACTACCTCCGCATACGCGGAGAAAAG	GGGACCGCACTACAGCCCGTCCCTGTGGGCTG
GGAACTACCTCCGCATACGCGGAGAAAAG	TCGGTGAATCCATCGGTGAGCACTTTCTCCCA
GGAACTACCTCCGCATACGCGGAGAAAAG	AAATCGACTACATCTTGAGCCTCTGGAACAAA
GGAACTACCTCCGCATACGCGGAGAAAAG	ACTTACTTCCCACCTACTCACCACGGTGGGAA
GGAACTACCTCCGCATACGCGGAGAAAAG	AACCCACGGTCCTGGTGTTGAGTCGTCGAGCA
GGAACTACCTCCGCATACGCGGAGAAAAG	TGCTGATATGACACCCGCGCAGCGTTTCGAGT
GGAACTACCTCCGCATACGCGGAGAAAAG	TCGCAGATTCCCTGATGGGAACGATCCTGAGT
GGAACTACCTCCGCATACGCGGAGAAAAG	ATTACGCCCATGGCTATCCCTTTAACGATGGC
GGAACTACCTCCGCATACGCGGAGAAAAG	TGGCCACAGCACCTGCACCAAAAAACTGTGAC
GGAACTACCTCCGCATACGCGGAGAAAAG	TGATCGACACTAACGGTAATGATCTTGATGAA
GGAACTACCTCCGCATACGCGGAGAAAAG	GCGATGTTGATGGGGAACTCATTGAAACTTTG
GGAACTACCTCCGCATACGCGGAGAAAAG	GGCAACACAACTTCCACAGTGCGGGCCTGGCG
GGAACTACCTCCGCATACGCGGAGAAAAG	CGCGTGGAATCAGCTGGGTGAGAACGCCGCACA
GGAACTACCTCCGCATACGCGGAGAAAAG	CAAGAAGGCTGGGCCTGGGTTGATTCCAACGT
GGAACTACCTCCGCATACGCGGAGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483416.1\|SQH03505.1\|2208258_2208759_-\|Ribosomal-protein-alanine-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
LS483416.1\|SQH03501.1\|2203256_2203430_+\|putative-secreted-protein	unknown	unknown	unknown
LS483416.1\|SQH03511.1\|2214276_2215170_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
LS483416.1\|SQH03496.1\|2200077_2200422_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483416.1\|SQH03497.1\|2200892_2201030_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483416.1\|SQH03510.1\|2213391_2214210_+\|rhomboid-family-protein	unknown	unknown	gnl\|CDD\|366759
LS483416.1\|SQH03498.1\|2201682_2202180_-\|repressor-like-immunity-protein	unknown	unknown	gnl\|CDD\|259851
LS483416.1\|SQH03493.1\|2195834_2196320_-\|Ferritin-like-protein	unknown	unknown	gnl\|CDD\|153113
LS483416.1\|SQH03507.1\|2210811_2212167_-\|Nicotinate-phosphoribosyl-transferase	unknown	unknown	gnl\|CDD\|236426
LS483416.1\|SQH03502.1\|2204499_2205606_-\|replicase-RepA	unknown	unknown	gnl\|CDD\|376986
LS483416.1\|SQH03506.1\|2208780_2210772_-\|ATP-dependent-helicase-dinG-like-protein	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
LS483416.1\|SQH03499.1\|2202620_2202812_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483416.1\|SQH03494.1\|2196759_2197746_+\|ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
LS483416.1\|SQH03495.1\|2198213_2199935_+\|Cytochrome-C-oxidase-polypeptide-I	unknown	unknown	gnl\|CDD\|238832
LS483416.1\|SQH03500.1\|2202932_2203232_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483416.1\|SQH03508.1\|2212291_2212672_+\|ATP-dependent-Clp-protease-adaptor-protein-ClpS	unknown	unknown	gnl\|CDD\|178809
LS483416.1\|SQH03512.1\|2215242_2216010_+\|Metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|293802
LS483416.1\|SQH03509.1\|2212769_2213306_+\|Domain-of-uncharacterised-function-(DUF2017)	unknown	unknown	gnl\|CDD\|378185
LS483416.1\|SQH03504.1\|2206984_2208262_+\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|319803
LS483416.1\|SQH03513.1\|2216048_2216783_+\|Ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914

Protein	Function_ID	Function_description	E-value
LS483416.1\|SQH03495.1\|2198213_2199935_+\|Cytochrome-C-oxidase-polypeptide-I	gnl\|CDD\|238832	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.	0
LS483416.1\|SQH03505.1\|2208258_2208759_-\|Ribosomal-protein-alanine-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.90982e-29
LS483416.1\|SQH03511.1\|2214276_2215170_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	2.10724e-131
LS483416.1\|SQH03494.1\|2196759_2197746_+\|ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
LS483416.1\|SQH03498.1\|2201682_2202180_-\|repressor-like-immunity-protein	gnl\|CDD\|259851	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins. This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain.	0.000933531
LS483416.1\|SQH03493.1\|2195834_2196320_-\|Ferritin-like-protein	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	2.6981e-58
LS483416.1\|SQH03507.1\|2210811_2212167_-\|Nicotinate-phosphoribosyl-transferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
LS483416.1\|SQH03502.1\|2204499_2205606_-\|replicase-RepA	gnl\|CDD\|376986	pfam03090, Replicase, Replicase family. This is a family of bacterial plasmid DNA replication initiator proteins. pfam01051 is a similar family. These RepA proteins exist as monomers and dimers in equilibrium: monomers bind directly to repeated DNA sequences and thus activate replication; dimers repress repA transcription by binding an inversely repeated DNA operator. Dimer dissociation can occur spontaneously or be mediated by Hsp70 chaperones.	4.13402e-24
LS483416.1\|SQH03509.1\|2212769_2213306_+\|Domain-of-uncharacterised-function-(DUF2017)	gnl\|CDD\|378185	pfam09438, DUF2017, Domain of unknown function (DUF2017). This is an alpha-helical domain found in gene neighborhoods that contain genes encoding ubiquitin, cysteine synthases and JAB peptidases.	2.05513e-72
LS483416.1\|SQH03512.1\|2215242_2216010_+\|Metal-dependent-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	8.33346e-76
LS483416.1\|SQH03506.1\|2208780_2210772_-\|ATP-dependent-helicase-dinG-like-protein	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	4.32908e-153
LS483416.1\|SQH03510.1\|2213391_2214210_+\|rhomboid-family-protein	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	3.59765e-23
LS483416.1\|SQH03508.1\|2212291_2212672_+\|ATP-dependent-Clp-protease-adaptor-protein-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	1.15238e-35
LS483416.1\|SQH03504.1\|2206984_2208262_+\|phosphoserine-phosphatase	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.19553e-94
LS483416.1\|SQH03513.1\|2216048_2216783_+\|Ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	1.6161e-163

>LS483416.1|SQH03502.1|2204499_2205606_-|replicase-RepA
MRVLVEHSIGPTWVGVNPVSGKDQFIWLIDPVYADASGKSSQMKLLAATTRTLGELLDNDPHFAHGFSRNPFYTGKSPSAYRWYRQHNRVMRLGDLIRQVRDLAGTDQYKTAPRQQFKSGRELINAVKTRREEAQAFKVLAQDVDAEVSAGLDQYDPELIDGVRVLWIAEGTAVRDETAFRHALKTGHRLRAAGQRLTDAAIIDAYEHAYNVAQAHGGAGRPAELAPMRDLQTMARRVRGYVTQSKSTASIGSSAPRKATTSERKALATMGRRGGQKAAQRWKTDPQGEYAQAQRKNLASANKRKRASGNNTRAQILAVASQSFTQTGKLPTWKAIEEEVGVSRRTVAYHVSALKKAGLYPEEQGAIP
>LS483416.1|SQH03501.1|2203256_2203430_+|putative-secreted-protein
MNKHKISPNAIVVALFGLAISGYVAIANKSILGFVILILLTIVVAVLVNHIKNSHQE
>LS483416.1|SQH03500.1|2202932_2203232_+|Uncharacterised-protein
MDLTLRDPHAITPYASGGKEQGGFWVEFTPLEQDLIIGGSGFVLGAAICAIPGVGWAVCTLVGAIITGATVVLSHHKKCNNRIKIHYTWAGTVRNSECT
>LS483416.1|SQH03499.1|2202620_2202812_+|Uncharacterised-protein
MLNTIWVVCNLGLKPLPLKIGITMRPRSKSLASLAAVAILFTGQGQAVAAEKDDPTTLQEFQE
>LS483416.1|SQH03498.1|2201682_2202180_-|repressor-like-immunity-protein
MSITPERVMQLLGEGMTQSQIAREYGVTRQYIFTLAKRGGHEAREMEYIKDDIPWPKVKDKHRDNTIYKTLRIHARYMERGQEGVRGSSYVKLLGMYRKLVRFNQVIDYDESYPPVKGLSNTGGFMYVPRSPEDGNLIIKMKPGVRITKRGAHIWQLPKKFPEKE
>LS483416.1|SQH03497.1|2200892_2201030_+|Uncharacterised-protein
MLNRRLVLDYNDYRLKKQELYAKERTRLGVFRAITYMAETLSIPT
>LS483416.1|SQH03496.1|2200077_2200422_-|Uncharacterised-protein
MHLQTTVTRVLITTTIALSFALASTSTLAHAETKSVPIACQELQADVEAWTKQLKEAESSHDQLSKNGHSKDAIKRYLERSQQYFQECVSSPPKHLHFELSSALPMFMSNLSSS
>LS483416.1|SQH03495.1|2198213_2199935_+|Cytochrome-C-oxidase-polypeptide-I
MTAVAPRLENYSEPTRPAPTGGARKGTLAWKMLTTTDHKQLGIMYIIMSFVFFFLGGLMALLIRAELFSPGLQYLSNEQFNQLFTMHGTVMLLLFGTPIVWGFANYILPLQIGAPDVAFPRLNAFGFWVTMIGAAAMLSGFLTPGGAADFGWTMYLPLADSIHSPGIGSDMWIVGVGATGVGTISSAINMITTILCMRAPGMTMFRMPIFCWNIFVASVLVLMIFPLLTAAALGVLYDRKLGGHLFDPGNGGAIMWQHLFWFFGHPEVYVLALPFFGIVSEIIPVFARKPMFGYIGLVFATLSIGSLSMAVWAHHMFVTGAILLPFFSFMTFLISVPTGVKFFNWLGTMWKGHVSWETPMTWTMGFLVTFLFGGLTGIMLASPPLDFHISDTYFVVAHFHYTLFGTVVFASFAGVYFWFPKMTGRMLDERLGKIHFWITFVGFHGTFLVQHWLGNEGMPRRYADYLDSDGFTTLNQISTIFSFLLGMSVLPFIWNVIKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTSLPRIRSERPALELHYPHMVERMRREAHVGHHAEPVTKKTS
>LS483416.1|SQH03494.1|2196759_2197746_+|ribonucleoside-diphosphate-reductase-subunit-beta
MESYDSYLESHKKPVSAINWNSIPDEKDLEVWDRLTGNFWLPEKVPVSNDLKSWGTLNDLEKTTTMRVFTGLTMLDTIQGTVGAVSMIPDAITPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIVLSYYEGADPLKRKVASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQQAVRQQTPERQAELKEYTFDLLYDLYDNEIQYTEDLYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPADECKVSPAILSALSPNADENHDFFSGSGSSYVIGKAENTTDDDWDF
>LS483416.1|SQH03493.1|2195834_2196320_-|Ferritin-like-protein
MSINEKLAAALNNQITAELEASMVYLQLSYILDDLSLTGMRNWMQAQHKEELDHAAQFSKHLLDRDYRPQIGDIAPPKLDANSAIEAFEASLAHEQKVTAMIRELAEIADSVKDYDSRPLIDRFLEEQIEEEATVKEILDRLRIADTGSGVLRIDAELAAR
>LS483416.1|SQH03504.1|2206984_2208262_+|phosphoserine-phosphatase
MIELDQPQVTVSLRPELTPAVITISGQDRQGVSAAAFRVLAANGVQILDVEQSQFRGFLGLAVFAGVEAAGVETLEIGLKETLKTYGQSVKIELQEVAQSSRPRSTHEVVILGDPVEAHDLSRIAQTLANFDANIDTIRGISDYPVTGLELKITVANRELGAAMPLRKALAELTTELGVDIAIERAGLLRRSKRLICFDCDSTLITGEVIEMLAAHAGREKEVAEVTERAMRGELDFEESLRERVKALAGLDASVIGEVADSIELTPGARTTIRTLKRLGYKTAVVSGGFIQVLEGLAEDLGLDYVRANTLEIVDGKLTGRVIGKVVDRAAKAEFLEEFARESGIEMHQTVAVGDGANDIDMISAAGLGIAFNAKPALREIADTSVNSPFLDEVVHMLGITRADIDAADDSDGKIRRVPLPQQKN
>LS483416.1|SQH03505.1|2208258_2208759_-|Ribosomal-protein-alanine-acetyltransferase
MAHIPTLRNESIRLRPLVLSDAHDLTATCVDPLTQKYTTIPAGYTLANAEEFITTEHDNLRWVITTLTSDRFCGQIELRPLVGEHNAMDVGYMTAPWARGQGLMTSALLLAVDYAFSLGVHRIELRTDPQNKASQRVAEKAGFLYQGLHNDFTVYSLLADEYRSSY
>LS483416.1|SQH03506.1|2208780_2210772_-|ATP-dependent-helicase-dinG-like-protein
MGAASTLCPMSDSPLALSTDELLDAAVAALGGSRRNGQVSMANAVTKALESERHLAVQAGTGTGKSLAYLVPALRHAQATDSTIIVSTATIALQRQLVERDLPRLADALEPHMSRRPTFAIMKGRANYVCMNKIAAAEEPEDALIDEEDLSWLGKHVARIYEWANETEVGDRDSLDPGVPDLAWRQVSVSAQECIGASRCPHGEDCFAEIARKKAHDVDVIVTNHALLAIDALSDVNVLPEHEVVIVDEAHELDGRITAVATNEIGVTALTMSSRRAGKLGAGDKDQKLIDISKEWEDAMLAVEPGRLTSLPESLKQQTIALRDAIWSLREHVSRVPEGEAANDPERHAERMSLSNHLGDQHDSVVRILSVFEEEDAASQEDVVWVLHDDRRGVMIKVAPLSIAGLLHARLFSENTVVLASATLNIGGNFNAMAASWGLAKGSWDSLDAGTPFDPAKSGILYTPNSLPDPGRDGLSPEVIDEIYDLIMAAGGRTLGLFSSRRAAQQATEAMRTRLPFDVLCQGDDTTGALVEKFSKQENTCLFGTLSLWQGVDVPGKACSLVIIDRIPFPRPDDPLLQARKDAADAEGRNGFMEVAATHAALLIAQGAGRLLRSVTDRGVVAILDRRIVTKRYGAFFIKSLPAFWRTNDPQVVRGALARLVAK
>LS483416.1|SQH03507.1|2210811_2212167_-|Nicotinate-phosphoribosyl-transferase
MTCASALIVFKAKLVCVTEFESTALLTDMYELTMLQSALADGTAYRNCTFEVFSRRLPNERRYGVVAGTARVLEAIKRYRFTEKQLASLTFLDATTIDFLRSYEFKGQIDGYREGELYFPSSPILTIRGTFAECVILETLILSIMNADSAVASAAARMVTAADGRPIFEMGSRRTHEYAAVTAARAAYLAGFVGTSNLEAVYRYGIPGSGTAAHAWTLLHVNDDGTPNEPAAFQSQINVLGVGTTLLVDTYDIAKGVKTAIEIAGPQLGAVRIDSGDLGVMTRKVRQELDSLGAHNTGIVVSSDLDEYAIAGLRGNPVDAFGVGTSVVTGSGAPTAGMVYKLVEVDGHPVAKRSRGKAMVGGTKRAVRTHRATGTAVEEIVFPYDHETPQIGQLNSYELTIPLMRNGIVVDNLPTLEESRAYLAEQLITLPWEGLALSKDEPVLSTRFIGF
>LS483416.1|SQH03508.1|2212291_2212672_+|ATP-dependent-Clp-protease-adaptor-protein-ClpS
MQVNQEDVTHSLNELPSVVLAPTMDVVVSSPMATPELDEDLSVDVASSENLPWMCIVWDDPVNLMSYVTYVFQTILGYSKRRAIELMMQVHTEGKAVVSSGERDKVEGDVKKLHTAGLWATMQQGG
>LS483416.1|SQH03509.1|2212769_2213306_+|Domain-of-uncharacterised-function-(DUF2017)
MQPWKKKKGLMRGAHFVCVLEPMEREVLGNLASTVSEALIHRAQTAPKDELAELTGMPSGHKEAPTDPALARLLPDFEKEGDEEFEGDNSLLRCLHETDITRAKVEHLQVLGQALGPDGGVHVDITEPEAHAWVAALNDIRLYVASGEVFGEEAEQDRDNLVEWLAYNQESLLNAMMG
>LS483416.1|SQH03510.1|2213391_2214210_+|rhomboid-family-protein
MELRDFFTRLCFIMTNRFNPYAQSDRNTYGGVSTSGGYLPHEYGAQYLPTPGYSADRVTQRGVDTSSWRSMGRKRLVDATVLALGYVVIIWAVHIVNTVFFGGTLAQGLGVHPLDGASIWHIFTSPLVHGNYMHLSANTLPGLIFVFLIGLSGRRAFWEVTMIAAVVGGMGTWIFGGIGTTHIGASGLIYGWLAYLVVRGIFNRSFSQVLLGMVLAFIYGGLIWGVLPGDVGVSWQAHLFGAIGGLIAGATITSDDPPALKARREQRALERS
>LS483416.1|SQH03511.1|2214276_2215170_+|glutamate-racemase
MDYVIQDHKSDSLKTEVPGVEPSIVYEGTIDASSPIGIFDSGVGGLTVARAIMEQLPQESVIYIGDTAHSPYGPKPIAQVRELSMRIGDELVARGCKMIVIACNTATSAALRDLRERYSIPVVGVILPAVRRAVATTRNGKIGVLGTQGTIASGAYQELFAASPGVDAYAQACPSFVSFVERGITSGRQILGVAQGYTEGLQAAGVDTLVLGCTHYPLLTGVIQLAVGDNVTLISSSEECVKDVLKTLSRNDMLADAATDKQPIRSFESTGDPALFEQLAMRFLGPHVTHVEKLREV
>LS483416.1|SQH03512.1|2215242_2216010_+|Metal-dependent-hydrolase
MKLTILGSSGSLGAPDNAASGYLIQMDNAPSILMDMGPGVLAQLERVQNPSDAHVVFSHLHADHCVDFPSLLVWRRYHPTAAAKGRNLCFGPTDTPIRMGRLSADSVDNIDDMSDTFAFTPWENAQEELVGAVSITPYSVIHPIETFALRVEHKRSGKIIAYSGDSSYTENLIECARNADVFLCEATWGETSEGKAPNMHMSGAEAGRIARLAGVKRLVLVHIPPWGNAEAALEKARSEYDGPIDISYQGMEINI
>LS483416.1|SQH03513.1|2216048_2216783_+|Ribonuclease-PH
MTTSNFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLFELGENTINIDCDVLQADGGTRTASITGAYVALADAITHLQKQGVVPGNPLKDPVAAVSVGVIDGTVCLDLPYEEDSRADVDMNVIMQSGRFVEIQGTGEHNTFDRDELTRILDFAEKGCAELVEVQKAVLGIA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483416_2	2.4\|1622349\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622349-1622380	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	291637-291668	7	0.781
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	711901-711932	7	0.781
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	570913-570944	7	0.781
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	648310-648341	7	0.781
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1340235-1340266	7	0.781
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NC_004174	Pseudomonas phage phi12 segment S, complete sequence	514-545	7	0.781
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	AY034425	Bacteriophage phi-12 nucleocapsid protein P8, morphogenetic protein P12, membrane protein P9, and muramidase genes, complete cds	514-545	7	0.781
LS483416_2	2.4\|1622349\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622349-1622380	32	NZ_CP025431	Paracoccus zhejiangensis strain J6 plasmid pPZ01, complete sequence	78172-78203	8	0.75
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	903063-903094	8	0.75
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	72511-72542	8	0.75
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	319858-319889	8	0.75
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	430542-430573	8	0.75
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NZ_CP041045	Paracoccus sp. AK26 plasmid pAK1, complete sequence	308431-308462	8	0.75
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	249443-249474	8	0.75
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	302856-302887	8	0.75
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	2095523-2095554	8	0.75
LS483416_2	2.10\|1622715\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622715-1622746	32	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	558449-558480	8	0.75
LS483416_3	3.4\|2205823\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	2205823-2205854	32	NZ_CP010068	Yersinia pseudotuberculosis str. PA3606 plasmid unnamed2, complete sequence	8514-8545	8	0.75
LS483416_3	3.4\|2205823\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	2205823-2205854	32	NZ_CP010069	Yersinia pseudotuberculosis str. PA3606 plasmid unnamed1, complete sequence	65616-65647	8	0.75
LS483416_3	3.13\|2206372\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	2206372-2206403	32	MT661596	Proteus phage 10, complete genome	73315-73346	8	0.75
LS483416_2	2.4\|1622349\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622349-1622380	32	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	23212-23243	9	0.719
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	385334-385365	9	0.719
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NZ_CP049320	Caballeronia sp. SBC2 plasmid pSBC2-4, complete sequence	314801-314832	9	0.719
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NZ_CP018172	Mesorhizobium oceanicum strain B7 plasmid unnamed1, complete sequence	67043-67074	9	0.719
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	350307-350338	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	281907-281938	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1717402-1717433	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1727067-1727098	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	342763-342794	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	363281-363312	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	288367-288398	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	1594628-1594659	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	346031-346062	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	408416-408447	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	499432-499463	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	2073777-2073808	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	69843-69874	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	348121-348152	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	958092-958123	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	1337218-1337249	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	2178472-2178503	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	347290-347321	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	44421-44452	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	357583-357614	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	344061-344092	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	236963-236994	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	343148-343179	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	360009-360040	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	735648-735679	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	340322-340353	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	344293-344324	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	347308-347339	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	360009-360040	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	361741-361772	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	346082-346113	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	360008-360039	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	338942-338973	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	361741-361772	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	346082-346113	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	360009-360040	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	361741-361772	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	338945-338976	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	361745-361776	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	346082-346113	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	346082-346113	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	346082-346113	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	360009-360040	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	1750573-1750604	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	360009-360040	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	338945-338976	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	357566-357597	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	357528-357559	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	350909-350940	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	349038-349069	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	344593-344624	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	360009-360040	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	338945-338976	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	361741-361772	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	416901-416932	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	360003-360034	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	338945-338976	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	338945-338976	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	360009-360040	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	346085-346116	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1732608-1732639	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	360009-360040	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	360009-360040	9	0.719
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1732608-1732639	9	0.719
LS483416_2	2.9\|1622654\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622654-1622685	32	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	506624-506655	9	0.719
LS483416_2	2.9\|1622654\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622654-1622685	32	NZ_CP028810	Burkholderia contaminans strain SK875 plasmid p875, complete sequence	193334-193365	9	0.719
LS483416_3	3.5\|2205884\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	2205884-2205915	32	NZ_CP042265	Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence	121142-121173	9	0.719
LS483416_3	3.15\|2206494\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	2206494-2206525	32	NZ_CP046704	Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence	312391-312422	9	0.719
LS483416_2	2.2\|1622227\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622227-1622258	32	AP014385	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S44-C133, * SEQUENCING IN PROGRESS *	16046-16077	10	0.688
LS483416_2	2.5\|1622410\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622410-1622441	32	NZ_CP017947	Bosea sp. Tri-49 plasmid unnamed1, complete sequence	265919-265950	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1760104-1760135	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	373438-373469	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1760240-1760271	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	236266-236297	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	408463-408494	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	530193-530224	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	68090-68121	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MT889397	Mycobacterium phage OfUltron, complete genome	10679-10710	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MF668281	Mycobacterium phage RitaG, complete genome	10418-10449	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MT889396	Mycobacterium phage Seabastian, complete genome	10679-10710	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MH669010	Mycobacterium phage PHappiness, complete genome	10423-10454	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MN428047	Mycobacterium phage Doomphist, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MF668271	Mycobacterium phage Geralt, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NC_041855	Mycobacterium phage Dorothy, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MF190168	Mycobacterium phage Spoonbill, complete genome	10451-10482	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MN735433	Mycobacterium phage Scottish, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MN586005	Mycobacterium phage Lorde, complete genome	10303-10334	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MN586012	Mycobacterium phage Blexus, complete genome	10461-10492	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MK359307	Mycobacterium phage Ochi17, complete genome	10679-10710	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MG770213	Mycobacterium phage OldBen, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MH669009	Mycobacterium phage Nimbo, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MK305886	Mycobacterium phage Poenanya, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	KC736071	Mycobacterium phage WIVsmall, complete genome	42482-42513	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NC_008196	Mycobacterium phage Llij, complete genome	10462-10493	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MN945900	Mycobacterium phage BodEinwohner17, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MN428051	Mycobacterium phage Modragons, complete genome	10679-10710	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NC_028923	Mycobacterium phage Llama, complete genome	10679-10710	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	FJ174693	Mycobacterium phage Ramsey, complete genome	10301-10332	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	JN542517	Mycobacterium phage Drago, complete genome	10303-10334	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MH669005	Mycobacterium phage JoeyJr, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MH001448	Mycobacterium phage UncleRicky, complete genome	10303-10334	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	DQ398045	Mycobacterium virus Llij, complete genome	10462-10493	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MN585987	Mycobacterium phage Enby, complete genome	10303-10334	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	MN204502	Mycobacterium phage KingMidas, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NC_022068	Mycobacteriophage Daenerys, complete genome	10445-10476	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NC_008205	Mycobacterium phage PMC, complete genome	10462-10493	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	DQ398050	Mycobacterium virus PMC, complete genome	10462-10493	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	NC_028844	Mycobacterium phage Phatniss, complete genome	10985-11016	10	0.688
LS483416_2	2.7\|1622532\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	1622532-1622563	32	FJ174692	Mycobacterium phage Pacc40, complete genome	10445-10476	10	0.688
LS483416_3	3.9\|2206128\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	2206128-2206159	32	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	1062713-1062744	10	0.688
LS483416_3	3.17\|2206617\|32\|LS483416\|PILER-CR,CRISPRCasFinder,CRT	2206617-2206648	32	NZ_LR699555	Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pI	110559-110590	10	0.688

1. spacer 2.4|1622349|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 7, identity: 0.781

ggcactgccgtccagctgatcctgc-gcaaagt	CRISPR spacer
gtcactgccggccagctgatcccgctgtactg-	Protospacer
* ******** ***********.** *.*  *

2. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

accggtgga--ggaatggcgcgaggctatggccg	CRISPR spacer
--gagcgaatcggaatggcgcgaggctttggccg	Protospacer
   .*.*.*  **************** ******

3. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

accggtgga--ggaatggcgcgaggctatggccg	CRISPR spacer
--gagcgaatcggaatggcgcgaggctttggccg	Protospacer
   .*.*.*  **************** ******

4. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 7, identity: 0.781

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
cttggccgctgtcggtaatgtcggtgatcagc	Protospacer
  * ************ ****.****** * *

5. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

agtcgccgctgtcggtcatgttggtgatgatc-	CRISPR spacer
agtcgccgctgtcggtca-gtttgccgtgcgcg	Protospacer
****************** *** *. .**  *

6. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_004174 (Pseudomonas phage phi12 segment S, complete sequence) position: , mismatch: 7, identity: 0.781

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
tgacgccgctgtcggtcatgctgttgtacatc	Protospacer
 * *****************.** **   ***

7. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to AY034425 (Bacteriophage phi-12 nucleocapsid protein P8, morphogenetic protein P12, membrane protein P9, and muramidase genes, complete cds) position: , mismatch: 7, identity: 0.781

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
tgacgccgctgtcggtcatgctgttgtacatc	Protospacer
 * *****************.** **   ***

8. spacer 2.4|1622349|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025431 (Paracoccus zhejiangensis strain J6 plasmid pPZ01, complete sequence) position: , mismatch: 8, identity: 0.75

ggcactgccgtccagctgatcctgcgcaaagt---	CRISPR spacer
ggcaaagccgtccagctgatcct---cgagcttca	Protospacer
****  *****************   *.*. *

9. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 8, identity: 0.75

accggtggaggaatggcgcgaggctatggccg	CRISPR spacer
tgaggtggaggaattgcgcgaggcgatagacc	Protospacer
   *********** ********* **.* *

10. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

accgg--tggaggaatggcgcgaggctatggccg	CRISPR spacer
--cagtttcgaggaatggcgcgaggtgatggcga	Protospacer
  *.*  * ****************. ***** .

11. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

accgg--tggaggaatggcgcgaggctatggccg	CRISPR spacer
--cagtttcgaggaatggcgcgaggtgatggcga	Protospacer
  *.*  * ****************. ***** .

12. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 8, identity: 0.75

accgg--tggaggaatggcgcgaggctatggccg	CRISPR spacer
--cagtttcgaggaatggcgcgaggtgatggcga	Protospacer
  *.*  * ****************. ***** .

13. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041045 (Paracoccus sp. AK26 plasmid pAK1, complete sequence) position: , mismatch: 8, identity: 0.75

accggtggaggaatggcgcgaggctatggccg	CRISPR spacer
cccgttggaggactggcgcgaggcgacaagcg	Protospacer
 *** ******* *********** *... **

14. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 8, identity: 0.75

agtcg--ccgctgtcggtcatgttggtgatgatc	CRISPR spacer
--tcagcgcgctgtcggtcgtcttggtgatgacg	Protospacer
  **.   ***********.* **********.

15. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 8, identity: 0.75

agtcg--ccgctgtcggtcatgttggtgatgatc	CRISPR spacer
--tcaacgcgctgtcggtcgttttggtgatgacg	Protospacer
  **.   ***********.* **********.

16. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.75

agtcg--ccgctgtcggtcatgttggtgatgatc	CRISPR spacer
--tcagcgcgctgtcggtcgtcttggtgatgacg	Protospacer
  **.   ***********.* **********.

17. spacer 2.10|1622715|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ctcggcccccgcgtggggaccttcagccccga	CRISPR spacer
tgcgcacgccgcgcgaggaccttcagccccgt	Protospacer
. **  * *****.*.***************

18. spacer 3.4|2205823|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010068 (Yersinia pseudotuberculosis str. PA3606 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gggaccg--cactacagcccgtccctgtgggctg	CRISPR spacer
--catcgacggctacggcccgtccctgtgggttg	Protospacer
   *.**   .****.***************.**

19. spacer 3.4|2205823|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010069 (Yersinia pseudotuberculosis str. PA3606 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gggaccg--cactacagcccgtccctgtgggctg	CRISPR spacer
--catcgacggctacggcccgtccctgtgggttg	Protospacer
   *.**   .****.***************.**

20. spacer 3.13|2206372|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MT661596 (Proteus phage 10, complete genome) position: , mismatch: 8, identity: 0.75

tgatcgacactaacggtaatgatcttgatgaa	CRISPR spacer
ggttgtaccctaacggtaatgatgttgataca	Protospacer
 * *  ** ************** *****. *

21. spacer 2.4|1622349|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 9, identity: 0.719

ggcactgccgtccagctgatcctgcgcaaagt	CRISPR spacer
aacctcgccttcccgctgatcctgcgcaagat	Protospacer
..* ..*** *** ***************..*

22. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 9, identity: 0.719

accggtggaggaatggcgcgaggctatggccg	CRISPR spacer
accggtggcggaattgcgcgaggcagcgttga	Protospacer
******** ***** ********* ..* . .

23. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049320 (Caballeronia sp. SBC2 plasmid pSBC2-4, complete sequence) position: , mismatch: 9, identity: 0.719

accggtggaggaatggcgcgaggctatggccg	CRISPR spacer
accggtggcggaattgcgcgaggcagcgttga	Protospacer
******** ***** ********* ..* . .

24. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018172 (Mesorhizobium oceanicum strain B7 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

accggtggaggaatggcgcgaggctatggccg	CRISPR spacer
gatgttccgggaatggcgcgctgctatggccg	Protospacer
. .* *  .***********  **********

25. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.719

accggtggaggaatggcgcgaggctatggccg	CRISPR spacer
gccggtcgaggaacggcgcgaggccggtgctc	Protospacer
.***** ******.**********..  **.

26. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

27. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

28. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

29. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

30. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

31. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

32. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

33. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

34. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

35. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

36. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

37. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

38. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

39. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

40. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

41. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

42. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

43. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

44. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

45. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

46. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

47. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

48. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

49. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

50. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

51. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

52. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

53. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

54. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

55. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

56. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

57. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

58. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

59. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

60. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

61. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

62. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

63. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

64. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

65. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

66. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

67. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

68. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

69. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

70. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

71. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

72. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

73. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

74. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

75. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

76. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

77. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

78. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

79. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

80. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

81. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

82. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

83. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

84. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

85. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

86. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

87. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

88. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccc	Protospacer
   . ***************.*****.** .*

89. spacer 2.9|1622654|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 9, identity: 0.719

atcatcgtctggccagtagcccccgtccacca	CRISPR spacer
ggaatcgtccggccagtagcccacgtctttaa	Protospacer
.  ******.************ ****. . *

90. spacer 2.9|1622654|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028810 (Burkholderia contaminans strain SK875 plasmid p875, complete sequence) position: , mismatch: 9, identity: 0.719

atcatcgtctggccagtagcccccgtccacca	CRISPR spacer
ggaatcgtccggccagtagcccacgtctttaa	Protospacer
.  ******.************ ****. . *

91. spacer 3.5|2205884|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042265 (Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

tcggtgaatccatcggtgagcactttctccca	CRISPR spacer
tcggtaaaaccatcggtgagcacgctgacatg	Protospacer
*****.** ************** .*  * ..

92. spacer 3.15|2206494|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046704 (Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence) position: , mismatch: 9, identity: 0.719

ggcaacacaacttccacagtgcgggcctggcg	CRISPR spacer
ccaaacacaacttccacattccgggcatttgg	Protospacer
   *************** * ***** *   *

93. spacer 2.2|1622227|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to AP014385 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S44-C133, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

caccagctgatgattcttttcgccccacacgt	CRISPR spacer
cacaagctggtgattcttttcgcagtttatta	Protospacer
*** *****.*************  . .*.

94. spacer 2.5|1622410|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017947 (Bosea sp. Tri-49 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

accggtggaggaatggcgcgaggctatggccg	CRISPR spacer
cccggtggaggattggcgctaggcgcgcttca	Protospacer
 *********** ****** ****     .*.

95. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccg	Protospacer
   . ***************.*****.** .

96. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccg	Protospacer
   . ***************.*****.** .

97. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccg	Protospacer
   . ***************.*****.** .

98. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccg	Protospacer
   . ***************.*****.** .

99. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
ccattccgctgtcggtcatgctggtggtgccg	Protospacer
   . ***************.*****.** .

100. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
cggcgccgcagtcggtcatgtcggtgcgcgcg	Protospacer
 * ****** ***********.****   ..

101. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gcgcgccgctgtcggtcatgctgctggacgtg	Protospacer
.  *****************.** **.  .*

102. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MT889397 (Mycobacterium phage OfUltron, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

103. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MF668281 (Mycobacterium phage RitaG, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

104. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MT889396 (Mycobacterium phage Seabastian, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

105. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MH669010 (Mycobacterium phage PHappiness, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

106. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MN428047 (Mycobacterium phage Doomphist, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

107. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MF668271 (Mycobacterium phage Geralt, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

108. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_041855 (Mycobacterium phage Dorothy, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

109. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MF190168 (Mycobacterium phage Spoonbill, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

110. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MN735433 (Mycobacterium phage Scottish, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

111. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MN586005 (Mycobacterium phage Lorde, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

112. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MN586012 (Mycobacterium phage Blexus, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

113. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MK359307 (Mycobacterium phage Ochi17, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

114. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MG770213 (Mycobacterium phage OldBen, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

115. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MH669009 (Mycobacterium phage Nimbo, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

116. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MK305886 (Mycobacterium phage Poenanya, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

117. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to KC736071 (Mycobacterium phage WIVsmall, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

118. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_008196 (Mycobacterium phage Llij, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

119. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MN945900 (Mycobacterium phage BodEinwohner17, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

120. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MN428051 (Mycobacterium phage Modragons, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

121. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_028923 (Mycobacterium phage Llama, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

122. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to FJ174693 (Mycobacterium phage Ramsey, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

123. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to JN542517 (Mycobacterium phage Drago, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

124. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MH669005 (Mycobacterium phage JoeyJr, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

125. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MH001448 (Mycobacterium phage UncleRicky, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

126. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to DQ398045 (Mycobacterium virus Llij, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

127. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MN585987 (Mycobacterium phage Enby, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

128. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to MN204502 (Mycobacterium phage KingMidas, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

129. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_022068 (Mycobacteriophage Daenerys, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

130. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_008205 (Mycobacterium phage PMC, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

131. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to DQ398050 (Mycobacterium virus PMC, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

132. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NC_028844 (Mycobacterium phage Phatniss, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

133. spacer 2.7|1622532|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to FJ174692 (Mycobacterium phage Pacc40, complete genome) position: , mismatch: 10, identity: 0.688

agtcgccgctgtcggtcatgttggtgatgatc	CRISPR spacer
gaacgccgctgtgggtcgtgttggtgcgaact	Protospacer
.. ********* ****.********  .*..

134. spacer 3.9|2206128|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

tgctgatatgacacccgcgcagcgtttcgagt	CRISPR spacer
tcagactatcacacccgcgcagcatttcgttg	Protospacer
*   . *** *************.*****

135. spacer 3.17|2206617|32|LS483416|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR699555 (Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pI) position: , mismatch: 10, identity: 0.688

caagaaggctgggcctgggttgattccaacgt	CRISPR spacer
gccgaaggctgggcgtgggttgaatcgcgccc	Protospacer
   *********** ******** **  .* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1562052 : 1591345

Bacillus_virus(40.0%)

holin,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH02943.1\|1562052_1562784_+\|transposase	transposase for insertion sequence element	A0A2P1JR32	Mycobacterium_phage	1.5e-27	49.7
SQH02944.1\|1563103_1563331_-	Uncharacterised protein	NA	NA	NA	NA
SQH02945.1\|1563379_1564138_-	Uncharacterised protein	NA	NA	NA	NA
SQH02946.1\|1564352_1565000_-	response regulator protein two-component system	NA	NA	NA	NA
SQH02947.1\|1565179_1566241_-	two-component system sensor kinase protein	NA	NA	NA	NA
SQH02948.1\|1566697_1567243_+	replicase RepA	NA	NA	NA	NA
SQH02949.1\|1567251_1567593_+\|transposase	transposase for insertion sequence element	Q6H9S3	Enterobacteria_phage	5.0e-18	53.1
SQH02950.1\|1567637_1567919_+	Puromycin N-acetyltransferase	NA	NA	NA	NA
SQH02951.1\|1568248_1569136_+\|holin	Choline transport ATP-binding protein OpuBA	G3M9Y6	Bacillus_virus	3.8e-25	34.9
SQH02952.1\|1569135_1569771_+\|holin	Choline transport system permease protein opuBD	NA	NA	NA	NA
SQH02953.1\|1569767_1570430_+\|holin	Choline transport system permease protein	NA	NA	NA	NA
SQH02954.1\|1570431_1571058_-	superfamily protein I DNA/RNA helicase	NA	NA	NA	NA
SQH02955.1\|1571268_1572906_-	Protein dipZ	NA	NA	NA	NA
SQH02956.1\|1572927_1573218_-	Uncharacterised protein	NA	NA	NA	NA
SQH02957.1\|1573253_1573577_+	Uncharacterised protein	NA	NA	NA	NA
SQH02958.1\|1573636_1574224_+	ECF family sigma factor K	NA	NA	NA	NA
SQH02959.1\|1574220_1574865_+	anti-sigma factor	NA	NA	NA	NA
SQH02960.1\|1574993_1575119_+	Uncharacterised protein	NA	NA	NA	NA
SQH02961.1\|1575120_1576368_+	major facilitator superfamily protein	NA	NA	NA	NA
SQH02962.1\|1576502_1576868_-	Uncharacterised protein	NA	NA	NA	NA
SQH02963.1\|1577180_1577471_-	Uncharacterised protein	NA	NA	NA	NA
SQH02964.1\|1577683_1578796_+	putative two component system sensor kinase	NA	NA	NA	NA
SQH02965.1\|1578792_1579449_+	putative two-component system response regulator	NA	NA	NA	NA
SQH02966.1\|1579513_1579888_+	putative integral membrane protein	NA	NA	NA	NA
SQH02967.1\|1579995_1580703_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.4e-13	27.6
SQH02968.1\|1580702_1582175_+	hypothetical membrane protein	NA	NA	NA	NA
SQH02969.1\|1582222_1583821_+	Oligo-1,6-glucosidase 1	NA	NA	NA	NA
SQH02970.1\|1584228_1585611_+	Magnesium transporter mgtE	NA	NA	NA	NA
SQH02971.1\|1585694_1586819_+	Fe(3+) dicitrate transport system permease protein fecD	NA	NA	NA	NA
SQH02972.1\|1586815_1587586_+	Fe(3+) dicitrate transport ATP-binding protein FecE	A0A1V0SKJ1	Klosneuvirus	3.9e-10	26.1
SQH02973.1\|1587595_1588594_+	Zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
SQH02974.1\|1588817_1589141_+	Transcription regulator padR	NA	NA	NA	NA
SQH02975.1\|1589137_1589668_+	Protein of uncharacterised function (DUF2812)	NA	NA	NA	NA
SQH02976.1\|1589761_1590604_+	thiosulfate sulfurtransferase	NA	NA	NA	NA
SQH02977.1\|1590631_1591345_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA

DBSCAN-SWA_2

2047230 : 2055694

Pandoravirus(33.33%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH03357.1\|2047230_2047812_+	Hypoxanthine-guanine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	3.9e-15	31.4
SQH03358.1\|2047808_2049815_+	cell division protein	E5EQU5	Bathycoccus_sp._RCC1105_virus	2.0e-111	50.7
SQH03359.1\|2049777_2050371_+	GTP cyclohydrolase I	A0A1W7AF02	Streptococcus_virus	8.6e-50	58.2
SQH03360.1\|2050372_2051155_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	1.1e-20	32.0
SQH03361.1\|2051141_2051483_+	Dihydroneopterin aldolase	NA	NA	NA	NA
SQH03362.1\|2051484_2051940_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	S4W084	Pandoravirus	1.9e-09	33.3
SQH03363.1\|2051936_2052383_+	putative secreted protein	NA	NA	NA	NA
SQH03364.1\|2052393_2052909_+	Dihydroneopterin aldolase	NA	NA	NA	NA
SQH03365.1\|2052905_2053292_+	Uncharacterised protein	NA	NA	NA	NA
SQH03366.1\|2053299_2053968_+	pantothenate synthetase	NA	NA	NA	NA
SQH03367.1\|2053945_2055694_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.2e-62	32.2

DBSCAN-SWA_3

2172127 : 2176861

Corynebacterium_phage(71.43%)

integrase

attL 2168578:2168591|attR 2173169:2173182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2168578:2168591	attL	NA	NA	NA	NA
SQH03464.1\|2172127_2172562_-\|integrase	putative phage-related integrase	A0A1W6JQG4	Corynebacterium_phage	3.2e-22	46.3
SQH03465.1\|2172592_2173321_-	Integrase	A0A1W6JQG4	Corynebacterium_phage	1.3e-39	42.0
2173169:2173182	attR	NA	NA	NA	NA
SQH03466.1\|2173516_2173756_-	Uncharacterised protein	A0A1W6JQ88	Corynebacterium_phage	4.7e-23	66.2
SQH03467.1\|2173709_2173880_-	Uncharacterised protein	A0A1W6JQ88	Corynebacterium_phage	2.7e-17	81.2
SQH03468.1\|2173872_2174451_-	Predicted membrane protein	NA	NA	NA	NA
SQH03469.1\|2174582_2175083_-	DNA-binding protein	A0A1W6JQ81	Corynebacterium_phage	9.6e-10	33.3
SQH03470.1\|2175270_2175537_+	Uncharacterised protein	NA	NA	NA	NA
SQH03471.1\|2175634_2175913_-	Uncharacterised protein	NA	NA	NA	NA
SQH03472.1\|2176066_2176486_+	antirepressor protein 1	A0A182BQC5	Lactococcus_phage	3.2e-19	39.9
SQH03473.1\|2176600_2176861_+	Uncharacterised protein	A0A088F8U4	Mycobacterium_phage	4.6e-08	47.8

DBSCAN-SWA_4

2212291 : 2280022

Tupanvirus(33.33%)

bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH03508.1\|2212291_2212672_+\|protease	ATP-dependent Clp protease adaptor protein ClpS	NA	NA	NA	NA
SQH03509.1\|2212769_2213306_+	Domain of uncharacterised function (DUF2017)	NA	NA	NA	NA
SQH03510.1\|2213391_2214210_+	rhomboid family protein	NA	NA	NA	NA
SQH03511.1\|2214276_2215170_+	glutamate racemase	NA	NA	NA	NA
SQH03512.1\|2215242_2216010_+	Metal-dependent hydrolase	NA	NA	NA	NA
SQH03513.1\|2216048_2216783_+	Ribonuclease PH	NA	NA	NA	NA
SQH03514.1\|2216779_2217403_+	putative deoxyribonucleotide triphosphate pyrophosphatase	NA	NA	NA	NA
SQH03515.1\|2217473_2217833_-	hypothetical membrane protein	NA	NA	NA	NA
SQH03516.1\|2217909_2218356_-	hypothetical membrane protein	NA	NA	NA	NA
SQH03517.1\|2218844_2219888_-	uncharacterized membrane protein	NA	NA	NA	NA
SQH03518.1\|2219933_2220560_-	two-component system transcriptional regulatory protein	NA	NA	NA	NA
SQH03519.1\|2220556_2221600_-	two-component system sensor kinase protein	NA	NA	NA	NA
SQH03520.1\|2221893_2222142_+	Uncharacterised protein	NA	NA	NA	NA
SQH03521.1\|2222364_2231463_+	Fatty acid synthase	NA	NA	NA	NA
SQH03522.1\|2231596_2231992_+	4'-phosphopantetheinyl transferase	NA	NA	NA	NA
SQH03523.1\|2231995_2232649_-	HTH-type transcriptional regulator EthR	NA	NA	NA	NA
SQH03524.1\|2232689_2233169_-	Bacterioferritin comigratory protein	NA	NA	NA	NA
SQH03525.1\|2233257_2233533_+	Protein of uncharacterised function (DUF3618)	NA	NA	NA	NA
SQH03526.1\|2233646_2233991_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
SQH03527.1\|2234006_2234561_-	pyrazinamidase/nicotinamidase	A0A2K9L2K0	Tupanvirus	5.2e-17	32.3
SQH03528.1\|2234772_2235768_-	Oxidoreductase	NA	NA	NA	NA
SQH03529.1\|2236153_2236429_+	Uncharacterised protein	NA	NA	NA	NA
SQH03530.1\|2236474_2237662_+	L,D-transpeptidase YkuD	NA	NA	NA	NA
SQH03531.1\|2237725_2238610_-	Dihydrodipicolinate synthase	NA	NA	NA	NA
SQH03532.1\|2238732_2239362_-	oligoribonuclease	M4M9I5	Vibrio_phage	2.8e-22	35.1
SQH03533.1\|2239457_2240261_-	short-chain dehydrogenase	NA	NA	NA	NA
SQH03534.1\|2240400_2241396_-	Mycocerosic acid synthase	NA	NA	NA	NA
SQH03535.1\|2241670_2243512_+\|protease	putative protease	A0A1B0T6A2	Bacillus_phage	3.9e-32	33.7
SQH03536.1\|2243605_2244295_-	putative membrane-anchored protein	NA	NA	NA	NA
SQH03537.1\|2245064_2247350_-	Carbon starvation protein A	NA	NA	NA	NA
SQH03538.1\|2247949_2249995_+	Copper resistance D domain-containing protein/Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA	NA	NA	NA
SQH03539.1\|2250154_2251078_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.4e-19	26.5
SQH03540.1\|2251074_2251833_+	putative transport permease yvfS	NA	NA	NA	NA
SQH03541.1\|2251865_2253317_-	YcaO-like family protein	NA	NA	NA	NA
SQH03542.1\|2253391_2253565_-	YcaO-like family protein	NA	NA	NA	NA
SQH03543.1\|2253603_2254581_-\|protease	Zn-dependent proteases	NA	NA	NA	NA
SQH03544.1\|2254577_2255591_-\|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain	NA	NA	NA	NA
SQH03545.1\|2255590_2258191_-	lantibiotic dehydratase domain-containing protein	NA	NA	NA	NA
SQH03546.1\|2258187_2259672_-	Nitroreductase	NA	NA	NA	NA
SQH03547.1\|2259707_2261258_-	YcaO-like family protein	NA	NA	NA	NA
SQH03548.1\|2261254_2262979_-	Uncharacterised protein	NA	NA	NA	NA
SQH03549.1\|2263515_2264079_+	ssDNA-binding protein	NA	NA	NA	NA
SQH03550.1\|2264248_2265919_+	ABC transporter ATP-binding protein	A0A2K9L0W2	Tupanvirus	6.0e-48	27.9
SQH03551.1\|2266119_2266548_+	Thioesterase	NA	NA	NA	NA
SQH03552.1\|2266553_2267162_+	Uncharacterised protein	NA	NA	NA	NA
SQH03553.1\|2267165_2268062_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQH03554.1\|2268073_2268466_-	hemoglobin-like protein	NA	NA	NA	NA
SQH03555.1\|2268491_2269451_-	small-conductance mechanosensitive channel	NA	NA	NA	NA
SQH03556.1\|2269595_2272211_-	aminopeptidase N	A0A2K9L1R3	Tupanvirus	2.2e-41	32.6
SQH03557.1\|2272513_2273134_+	DSBA oxidoreductase	NA	NA	NA	NA
SQH03558.1\|2273323_2273830_+	ribose 5-phosphate isomerase	NA	NA	NA	NA
SQH03559.1\|2273947_2274958_+	Pirin C-terminal domain-containing protein	NA	NA	NA	NA
SQH03560.1\|2275040_2275844_-	putative membrane protein, putative pseudogen	NA	NA	NA	NA
SQH03561.1\|2275978_2276221_-	Uncharacterised protein	A0A1W6JRB8	Corynebacterium_phage	3.9e-09	48.4
SQH03562.1\|2277096_2278449_+	trigger factor Tig	NA	NA	NA	NA
SQH03563.1\|2278777_2279377_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-42	48.3
SQH03564.1\|2279392_2280022_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.4e-37	43.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483416

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection