CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483435	Neisseria elongata subsp. glycolytica strain NCTC11050 genome assembly, chromosome: 1	1 crisprs	DEDDh,DinG,RT,csa3,cas3,WYL,cas2,cas1,cas4,cas7,cas3HD	1	4	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483435_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483435_1

1904782-1905463

Unclear

Consensus_repeat	Method
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	CRISPRCasFinder
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	CRT
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	PILER-CR

10 spacers

cas2,cas1,cas4,cas7

The CRISPR arrays of LS483435_1

>merge|LS483435|1|1904782-1905463|CRISPRCasFinder,CRT,PILER-CR
GTTTCAACACACAGCCGCCCGAAGGTGGCTGCACTCACCACCACCGTCATCATCCAACCCTAGGAGGTTTCAACACACAGCCACCCGAAGGCGGCTGCTGGCGCAGCGGATCAGCCAGTTCTTTATTGAGAGTTTCAATACACAGCCGCCCGAAGGCGGCTGGTTGGCCAAAACCTGCACTGTTGGACGTTCGGGGTTTCAATACACAGCCGCCCGAAGGCGGCTGGAAAAACGGCGGCCATCCCAAACCGGCAAACCGCGGTTTCAATACACAGCCGCCCGAAGGCGGCTGTAAAACCCTGAACGCCGATGTGTACGAGCAGGTGTTTCAATACACAGCCGCCCGAAGGCGGCTGGCCAAAAGCCACCTTATCGAGCAGGCAAAGCAGGTTTCAATACACAGCCGCCCGAAGGCGGCTGTTGAGCAGCAGGAATGCCGTTCGGTCGGTCGCAAAGTTTCAATACACAGCCGCCCGAAGGCGGCTGCATGATACGCGGCAGGCAATATGCCAAAAATACCGTTTCAATACACAGCCGCCCGAAGGCGGCTGCAACGTTCAGCCCTGCTGTCGGGCTTCTCTTCTGTGTTTCAATACACAGCCGCCCGAAGGCGGCTGTCCGCATCATCGGCAGCCGGGCCTGGCTGACCCTGTTTCAATACACAGCCGCCCGAAGGCGGCTG

>LS483435|1|1|1904782-1905463|CRISPRCasFinder
GTTTCAACACACAGCCGCCCGAAGGTGGCTG	CACTCACCACCACCGTCATCATCCAACCCTAGGAG
GTTTCAACACACAGCCACCCGAAGGCGGCTG	CTGGCGCAGCGGATCAGCCAGTTCTTTATTGAGA
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	GTTGGCCAAAACCTGCACTGTTGGACGTTCGGG
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	GAAAAACGGCGGCCATCCCAAACCGGCAAACCGCG
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	TAAAACCCTGAACGCCGATGTGTACGAGCAGGT
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	GCCAAAAGCCACCTTATCGAGCAGGCAAAGCAG
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	TTGAGCAGCAGGAATGCCGTTCGGTCGGTCGCAAA
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	CATGATACGCGGCAGGCAATATGCCAAAAATACC
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	CAACGTTCAGCCCTGCTGTCGGGCTTCTCTTCTGT
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	TCCGCATCATCGGCAGCCGGGCCTGGCTGACCCT
GTTTCAATACACAGCCGCCCGAAGGCGGCTG

>LS483435|1|1|1904782-1905463|CRT
GTTTCAACACACAGCCGCCCGAAGGTGGCTG	CACTCACCACCACCGTCATCATCCAACCCTAGGAG
GTTTCAACACACAGCCACCCGAAGGCGGCTG	CTGGCGCAGCGGATCAGCCAGTTCTTTATTGAGA
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	GTTGGCCAAAACCTGCACTGTTGGACGTTCGGG
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	GAAAAACGGCGGCCATCCCAAACCGGCAAACCGCG
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	TAAAACCCTGAACGCCGATGTGTACGAGCAGGT
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	GCCAAAAGCCACCTTATCGAGCAGGCAAAGCAG
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	TTGAGCAGCAGGAATGCCGTTCGGTCGGTCGCAAA
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	CATGATACGCGGCAGGCAATATGCCAAAAATACC
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	CAACGTTCAGCCCTGCTGTCGGGCTTCTCTTCTGT
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	TCCGCATCATCGGCAGCCGGGCCTGGCTGACCCT
GTTTCAATACACAGCCGCCCGAAGGCGGCTG

>LS483435|1|1|1904913-1905463|PILER-CR
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	GTTGGCCAAAACCTGCACTGTTGGACGTTCGGG
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	GAAAAACGGCGGCCATCCCAAACCGGCAAACCGCG
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	TAAAACCCTGAACGCCGATGTGTACGAGCAGGT
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	GCCAAAAGCCACCTTATCGAGCAGGCAAAGCAG
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	TTGAGCAGCAGGAATGCCGTTCGGTCGGTCGCAAA
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	CATGATACGCGGCAGGCAATATGCCAAAAATACC
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	CAACGTTCAGCCCTGCTGTCGGGCTTCTCTTCTGT
GTTTCAATACACAGCCGCCCGAAGGCGGCTG	TCCGCATCATCGGCAGCCGGGCCTGGCTGACCCT
GTTTCAATACACAGCCGCCCGAAGGCGGCTG

Protein	Signature genes	Signature genes Name	Protein_function
LS483435.1\|SQH50684.1\|1905653_1905947_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LS483435.1\|SQH50693.1\|1912301_1913687_-\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|182502
LS483435.1\|SQH50680.1\|1902084_1902534_-\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|234646
LS483435.1\|SQH50681.1\|1902618_1903335_-\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|319854
LS483435.1\|SQH50692.1\|1911781_1912231_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372664
LS483435.1\|SQH50682.1\|1903419_1904124_-\|putative-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180148
LS483435.1\|SQH50686.1\|1907096_1908242_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372906
LS483435.1\|SQH50674.1\|1895890_1897579_-\|sodium/proline-symporter	unknown	unknown	gnl\|CDD\|236495
LS483435.1\|SQH50675.1\|1897575_1897896_-\|Inner-membrane-protein-yjcH	unknown	unknown	gnl\|CDD\|377315
LS483435.1\|SQH50688.1\|1909265_1909883_-\|recombinase-B	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
LS483435.1\|SQH50691.1\|1910746_1911502_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379379
LS483435.1\|SQH50679.1\|1901112_1901934_-\|diadenosine-tetraphosphatase	unknown	unknown	gnl\|CDD\|234673
LS483435.1\|SQH50687.1\|1908386_1909217_-\|CAAX-amino-terminal-protease-self--immunity	unknown	unknown	gnl\|CDD\|376806
LS483435.1\|SQH50678.1\|1899370_1900906_-\|sodium-dependent-inner-membrane-transport-protein	unknown	unknown	gnl\|CDD\|271366
LS483435.1\|SQH50683.1\|1904143_1904623_-\|S-ribosylhomocysteinase	unknown	unknown	gnl\|CDD\|179399
LS483435.1\|SQH50690.1\|1910154_1910439_-\|phage-associated-protein	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
LS483435.1\|SQH50676.1\|1898138_1899035_-\|Hsp33-like-chaperonin	unknown	unknown	gnl\|CDD\|238278
LS483435.1\|SQH50689.1\|1909897_1910215_-\|phage-associated-protein	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
LS483435.1\|SQH50677.1\|1899263_1899374_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|293556
LS483435.1\|SQH50685.1\|1906021_1907035_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360

Protein	Function_ID	Function_description	E-value
LS483435.1\|SQH50684.1\|1905653_1905947_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.44565e-31
LS483435.1\|SQH50693.1\|1912301_1913687_-\|integral-membrane-protein	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	2.51653e-109
LS483435.1\|SQH50680.1\|1902084_1902534_-\|recombination-regulator-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	1.14615e-40
LS483435.1\|SQH50681.1\|1902618_1903335_-\|phosphoglycolate-phosphatase	gnl\|CDD\|319854	cd16417, HAD_PGPase, Escherichia coli Gph phosphoglycolate phosphatase and related proteins; belongs to the haloacid dehalogenase-like superfamily. Phosphoglycolate phosphatase (PGP; EC 3.1.3.18) catalyzes the conversion of 2-phosphoglycolate into glycolate and phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.73561e-105
LS483435.1\|SQH50692.1\|1911781_1912231_-\|Uncharacterised-protein	gnl\|CDD\|372664	pfam13664, DUF4149, Domain of unknown function (DUF4149).	1.47983e-10
LS483435.1\|SQH50682.1\|1903419_1904124_-\|putative-nucleoside-phosphorylase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	3.32392e-110
LS483435.1\|SQH50686.1\|1907096_1908242_-\|Uncharacterised-protein	gnl\|CDD\|372906	pfam14082, DUF4263, Domain of unknown function (DUF4263). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 244 and 403 amino acids in length.	1.58582e-13
LS483435.1\|SQH50674.1\|1895890_1897579_-\|sodium/proline-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
LS483435.1\|SQH50675.1\|1897575_1897896_-\|Inner-membrane-protein-yjcH	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	9.74068e-25
LS483435.1\|SQH50688.1\|1909265_1909883_-\|recombinase-B	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	6.12539e-31
LS483435.1\|SQH50691.1\|1910746_1911502_-\|Uncharacterised-protein	gnl\|CDD\|379379	pfam13803, DUF4184, Domain of unknown function (DUF4184). This domain of unknown function contains several highly conserved histidines.	1.93447e-47
LS483435.1\|SQH50679.1\|1901112_1901934_-\|diadenosine-tetraphosphatase	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	1.91831e-134
LS483435.1\|SQH50687.1\|1908386_1909217_-\|CAAX-amino-terminal-protease-self--immunity	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.04141e-05
LS483435.1\|SQH50678.1\|1899370_1900906_-\|sodium-dependent-inner-membrane-transport-protein	gnl\|CDD\|271366	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter.	0
LS483435.1\|SQH50683.1\|1904143_1904623_-\|S-ribosylhomocysteinase	gnl\|CDD\|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	2.19849e-80
LS483435.1\|SQH50690.1\|1910154_1910439_-\|phage-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	3.97909e-37
LS483435.1\|SQH50676.1\|1898138_1899035_-\|Hsp33-like-chaperonin	gnl\|CDD\|238278	cd00498, Hsp33, Heat shock protein 33 (Hsp33): Cytosolic protein that acts as a molecular chaperone under oxidative conditions. In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat shock), the Cys are reversibly oxidized to disulfide bonds, which causes the chaperone activity to be turned on. Hsp33 is homodimeric in its functional form.	3.00377e-110
LS483435.1\|SQH50689.1\|1909897_1910215_-\|phage-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.68772e-44
LS483435.1\|SQH50677.1\|1899263_1899374_-\|Uncharacterised-protein	gnl\|CDD\|293556	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit. MaAIMP_sms is a family of hypothetical proteins from Proteobacteria that purported to be small subunits of a methionine and alanine importer.	3.70543e-06
LS483435.1\|SQH50685.1\|1906021_1907035_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0

>LS483435.1|SQH50683.1|1904143_1904623_-|S-ribosylhomocysteinase
MSEIQIEKKMNVESFNLDHTKVKAPYVRLACVTDGDFGDKIYKYDLRVCQPNQEHMEMPSLHSLEHLMAELSRNHSDKIVDISPMGCQTGFYIALLNMGDYDEVLQLIENTLKDVLSATEVPACNVVQCGWAASHSLEGAQQIARGLLDKRGEWPQVFA
>LS483435.1|SQH50682.1|1903419_1904124_-|putative-nucleoside-phosphorylase
MNTIRTIAVIGAMQPEIELLKGRLNNCESHRFGAFEIHCGELHGKRIVLTLSGIGKVNAAAATATAILKFSPDCVINTGSAGGLAQGLKVGDVVIGSETAHHDVDVTAFGYAIGQVPQLPPAFASDHALVTAAERAAAAFPNAAVRRGLIVSGDRFVHSSEAVAAIRKNFPDVQAVEMEAAAIAQTCAQFSLPFVVIRAVSDAADEKADVSFEKFLQTAAVHSAEMVDGMIREL
>LS483435.1|SQH50681.1|1902618_1903335_-|phosphoglycolate-phosphatase
MNGTIEHVQAAAFDLDGTLCDSLPDLAAAANAMRASLDLPPLPQPTVESYVGDGIAVLVHRALTGNVDDRAEEKLWAQGFTLFVQYYAEHIADRTCAYPETEAGLGLLKSLGIPLAVITNKNEVLAVKLLEALGLFDYFSLVLGGDSLPEKKPSPVPLLHAAEVLGVPVENMIMVGDSRNDILAAKAAGCPSIGVTFGYGDMAELSKHEATRPDWTIGSLPEIYENLRPQREEKEKGV
>LS483435.1|SQH50680.1|1902084_1902534_-|recombination-regulator-RecX
MNPQKTLRARALDILSRQEISRAELKRKLAPHAESEEEIERVLNEFADRRWQSDERYAEAYIHSKSRKHGSLRLKQALAQKGVDEETVRAFLPDRDKELASAVEVVRKKFKRPPADYAEKLKQMRFLAYRGFDGDTVQTALRQAWTEEE
>LS483435.1|SQH50679.1|1901112_1901934_-|diadenosine-tetraphosphatase
MAHYAIGDVQGCFDELEALLAKIGFNHGCDTLWLTGDIVNRGPKSLESLKFCMKHEDSVQIILGNHDLHLLAVLYGHGTMKKRDTIEPIVKHKHADKMRDWLRHQPLLVQKDSYLMVHAGLLPQWTAVQAAEFAREVEHSMRRSKHGEYFAEMYGNKPAAWSEDLRGADRLRLLVNVFTRMRALNADGSLDYDFKSTPSEMPPHLHAWFDAPNRRHLDHTIVFGHWSALGLLDSAEKKVLALDTGALWGGCLTAVNLADHSIVQEAAHGRLDW
>LS483435.1|SQH50678.1|1899370_1900906_-|sodium-dependent-inner-membrane-transport-protein
MSEQQQSQRETFSSRKAFMFAAIGSAVGLGNIWRFPYVAYDNGGGAFIIPYLIALITAGIPLLLLDYAIGHRYRGSPPLAFRHVSKYFEPFGWWNVLTNVVICTYYAVILGWAVSYTFYSVTGTWGAQPESFFFGEYLKMAKDPGLGLDFVGTVLWPLIGVWLFTIFILAAGVQKGVARASTFFMPLLVVMFVLMVGISLTLPGATKGLDALFTPNWSKLTEPGVWVAAYGQIFFSLSICFGIMITYSSYLKPKSDLGSTGLVVGFANSSFEVLAGIGVFAALGFMAASQGKEVSDVASSGIGLAFIAFPTIINQVQAPLGSIIGVLFFGSLVFAGITSLISVVEVIVAAVQDKWKVARVPATLAVCIPMAVISTLLFGTTTGLPVLDVLDKFINVYGIVAAGFMYVLALVVWEKLPLLRKHVNSVSSFKIGIVWNFFILTTLNVLGYMLFLDTRDLLAKNYSGYPDWFLNILGWGMAGGLIVLSVILTFLPWHRSAATIAPIDNNEGDLE
>LS483435.1|SQH50677.1|1899263_1899374_-|Uncharacterised-protein
MSTNAIIMMMISLVVIWGGFVVSILRLPKEQKGQEE
>LS483435.1|SQH50676.1|1898138_1899035_-|Hsp33-like-chaperonin
MNPNNQDLRTRFIFDDMPVRGLHVRLEEVWRHIVGRKQYPAAIRRALGELLAAGALLSSNLKLEGTLIVQVQGQGRLKMLVVEATSNQTCRATARWDETAQIGGNETLRNLLGENGVFVITVQPQDGEPWQGVVPLEGGSIAEMLTHYMLRSEQLETHITLAADGDTASGLLLQRLPEEALDEDAWAHVTALADTVTAEELLKLDAQHLLYRLFHETPPRVFEPETLEFACTCSRGKVSDMLLMLGGEEVGSIVAEEGSISVDCDFCNEKYVFDETDVNALFGADVVNAVREEQHRLQ
>LS483435.1|SQH50675.1|1897575_1897896_-|Inner-membrane-protein-yjcH
MDKQTTSKVLSHPKFQTMAKQKSILGWTFSAVMFVVYTLFVAYLGIDPQAFATPVSEGGITTWGIYIGLAVIVFAVAITGIYVYVANGRFEETTREVVREVTEGKK
>LS483435.1|SQH50674.1|1895890_1897579_-|sodium/proline-symporter
MKKMNKFYFAFAACLAANTAWAADAISGEVQQRPLNIPAVVMFFIFVGATLFITKWAAKKNKSSKDFYTAGGGISGFQNGLAIAGDFMSAASFLGISAMVFTRGYDGLIYSTGFLVGWPLVLFLVAERLRNLGKFTFSDVVAYRLQQTPVRLLAASGSILVVMLYLIAQIVGAGKLIQLLFGMNYLSAVVIVGVLMVAYVLFGGMLATTWVQMIKAVLLLSGASFMAFVILKASGFSMEQMFAKAVSIHEKGSKILEPGGLVKDPIDALSLGLALMFGTAGLPHILMRFFTVPDAKEARKSVFVATGFIGYFYILTFIIGFGAIIFVTKDNPNFFAEMVKDGKTVYEMIGGSNMAAVHLSEALGGNMFLGFISAVAFATILAVVAGLTLSGASAVSHDIYASVIRKGKATSHEEMRVSRATVLILGVLSIIFGLIFENQNVAFMVGLAFAVAASANFPILALSMFWKGLTTRGAVVGGYTGLLLSLVMIILGPSVWVSVFHFESPIFPYGSPAIFSIPAAFIAAWLASITDKSARAEEDKAGYEEQYVRSMTGIGAEKASDH
>LS483435.1|SQH50684.1|1905653_1905947_-|CRISPR-associated-endoribonuclease-Cas2
MLMLITYDISLEDAEGKARLRRVAKLCLDYGVRVQYSVFECDIAPDQWVVLKDKLLKTYNPETDSLRFYHLGSKWRRKVEHHGAKPAVDVFKDTLIV
>LS483435.1|SQH50685.1|1906021_1907035_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG
MRKLQNTLYITTQGSYLHKERETLVVEQGRKKVAQLPVHSIGHIFCFGNVLVSPFLLGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYRVSEQNPVPIARNIIAAKIQASKRVLQRQIRNYGENAAIQSAVDSLNISLRQLKSAAELDVVRGIEGDAAARYFGVFGQLLSEKSGFTFDGRNRRPPRDRVNALLSFVYSILGKDISGALQGVGLDPQVGFLHADRPGRDSLAQDILEEFRAWWADRLVLSLINRGQIKPQDFVAEASGAVSLKADARKLLFQALQAKKQEKIVHPFLGEEVEIGLLPYIQSMLLARHLRGDLAEYPPFLMR
>LS483435.1|SQH50686.1|1907096_1908242_-|Uncharacterised-protein
MKILDFVFDFGKASLNGTGGLCRVRTYAGKDSKPVTFLTELDKNDGQSVTNAVEFIIEKLILDRGFNNHIFIEHYERDNNVFFHDTFYIVFIKNQKPKWNQLSQIEVENLIGNDNFTDLKNDRSSKNERILKQADSIRFKRNPWIDSPYQQSDSFIQRKLSIEKQMKSKNDLIKLVESKCIEQNLLTFLKQDLSFFGEVYSNPEDEYIVFSEFPIENGSKDKNGFIDFVVFTGRSRMDVILIEIKGANFNLFNQNGYQQPHADISKAEQQIRDRLEAVYYKDMSSFRKQCHIFRDEAENGKSTFKNYLVGAEGKLLVDPNKEIKIRTVIIGGRTQDDQKESLERHKFERAHTIPITLESWDTWIRKLKRENQFEIISVISY
>LS483435.1|SQH50687.1|1908386_1909217_-|CAAX-amino-terminal-protease-self--immunity
MQDKYSRNLDVNYSHPWQYFLLVYALSAPFWLLSLFLKHSPLPDNLPLTDIGAALTPMIAAALLRYREGGMAAVRGLFGRVFDYGRIKHFSYFWTAILIFPLLYLLTYVAIRQTGQTIPALSVSFVPLAGAFVMFFIAAVAEELGYAAYATESLQRRFTPLVTALIIGVPWALWHLPSMIAVGQSAELIAWGLAGTVAVRIIYVWLYNGSGDSVFVLIACHTVANTARTGFPGGRAAYENGDGMIPYGIIIIAAAIVMVFLCKAMCSPYDRGKLYS
>LS483435.1|SQH50688.1|1909265_1909883_-|recombinase-B
MTALLTESQGENQDTRLIPLSALQHYAFCPRQCALIHNEQAWAENYLTAQGRALHERVDSGEPETRKGVRFERTVHVSAEKLGISGVLDLVEVDTKTGRLKPVEYKRGKPKPDPMDEIQLCAQGLCLEEMTGQTVSEGALWYMQTRHRVPVVFSDDLRTQTLARHYRRRPRTSKQRPNPAAQLRQTLQILLAGGDLPAGVVRDTG
>LS483435.1|SQH50689.1|1909897_1910215_-|phage-associated-protein
MHGFISANLAAKTGFSDDDLAKLWQALTLMFEHDRFAARGEMAARKLIVFKHDSALGSQPAHKLFDAVKVERVNGESGTPASGFGDYKISVVSDGLNGVSVEELL
>LS483435.1|SQH50690.1|1910154_1910439_-|phage-associated-protein
MCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIVPLEVSITRMAVTNEKDLEKERTMGANTSSLTRSTACTALFQLTLPPKPVFQTTT
>LS483435.1|SQH50691.1|1910746_1911502_-|Uncharacterised-protein
MPFTLAHPIAVLPFTLAHPIAVLPFSRCRYCHFPALVIGSLSPDFVYFLHGRAVSGGHGLADMLWPNLPLCFAVYWLYLALWRDTLSDFLPNCLNAAPYRPSENVDFHKIKEVAFIPSALFGMGTHLFLDAFTHPTGWFVQHFLVLQQTVLFLPIFKWLQYGGGVIGVTACLYFIFHTARRRPYRSRQTIGQKYRFWILCTILSLLGFSIWQIIAPVPLGHAATQTIRLIDCAVISFSILCLRHIARRENG
>LS483435.1|SQH50692.1|1911781_1912231_-|Uncharacterised-protein
MNRLCALLTGLWLGMQIMAGYVAAPILFERLGKQEAGNIAGVLFSINNYFGLLAWAMAWLVVRSNSNRSFSNNGKVAPKFIILLLLLTAANQFLMTPVIAAHKAGTENWLLSLLGGSFGMWHGISNVIYLVCSFLGLGLLLRYLKFEKN
>LS483435.1|SQH50693.1|1912301_1913687_-|integral-membrane-protein
MAATPSRWLPLLLAVCIFMQMLDATVLNTALPQMAADLQQSPLNMQSAVISYALTLALFMPMSGYLTDRYGTKKVFSVSMALFVLGSLMCAAAPNLPLLVFARVVQGMGGAMMVPVPRLIILRAYDKAELINRMNFVVMPALLGPIAGPLVGGYLVEYASWHWVFLINVPIGLAGIVWAAKIMPDFSAPEGSVPHFDLTGFLLFGAAAVGLSLSVELLMHPGARLFSALCGTGGLAALWCYWRHARHDGDLALYPPRLRLVRTFRLGILGNLISRLGMGAMPFLMPLLLQVAFMRSASVSGQMLAPVALAALLTKPFVKPLIVRFGYRRVLIWNTRIIGLLIMSMALPDASTPVWLIVPVLFVLGMCNSLQYSSMNTLTLADLRPQMEGSGNSLMAVNQQLAISFGIALGALLLNFFGSGNPRTGNVHQAFQYTFLVIGTITFCASWVFVYLHPKDGSNLV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483435_1	1.10\|1905399\|34\|LS483435\|CRISPRCasFinder,CRT,PILER-CR	1905399-1905432	34	LS483435.1	393637-393670	2	0.941

1. spacer 1.10|1905399|34|LS483435|CRISPRCasFinder,CRT,PILER-CR matches to position: 393637-393670, mismatch: 2, identity: 0.941

tccgcatcatcggcagccgggcctggctgaccct	CRISPR spacer
tccgcatcatcggcaaccgagcctggctgaccct	Protospacer
***************.***.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483435_1	1.3\|1904944\|33\|LS483435\|CRISPRCasFinder,CRT,PILER-CR	1904944-1904976	33	NZ_CP034682	Klebsiella quasipneumoniae strain D120-1 plasmid pD120-1_13kb, complete sequence	1732-1764	6	0.818
LS483435_1	1.10\|1905399\|34\|LS483435\|CRISPRCasFinder,CRT,PILER-CR	1905399-1905432	34	NZ_CP021468	Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1	20686-20719	8	0.765
LS483435_1	1.1\|1904813\|35\|LS483435\|CRISPRCasFinder,CRT	1904813-1904847	35	MF919533	Propionibacterium phage Supernova, complete genome	17668-17702	9	0.743
LS483435_1	1.10\|1905399\|34\|LS483435\|CRISPRCasFinder,CRT,PILER-CR	1905399-1905432	34	NZ_CP016619	Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence	898281-898314	9	0.735
LS483435_1	1.10\|1905399\|34\|LS483435\|CRISPRCasFinder,CRT,PILER-CR	1905399-1905432	34	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	471772-471805	10	0.706
LS483435_1	1.10\|1905399\|34\|LS483435\|CRISPRCasFinder,CRT,PILER-CR	1905399-1905432	34	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	325258-325291	10	0.706
LS483435_1	1.10\|1905399\|34\|LS483435\|CRISPRCasFinder,CRT,PILER-CR	1905399-1905432	34	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	330777-330810	10	0.706
LS483435_1	1.10\|1905399\|34\|LS483435\|CRISPRCasFinder,CRT,PILER-CR	1905399-1905432	34	NZ_CP013635	Rhizobium sp. N324 plasmid pRspN324e, complete sequence	562529-562562	10	0.706
LS483435_1	1.10\|1905399\|34\|LS483435\|CRISPRCasFinder,CRT,PILER-CR	1905399-1905432	34	NZ_CP029986	Sphingomonas sp. FARSPH plasmid p01, complete sequence	62525-62558	10	0.706
LS483435_1	1.2\|1904879\|34\|LS483435\|CRISPRCasFinder,CRT	1904879-1904912	34	MN508622	UNVERIFIED: Enterobacter phage EC-W2, complete genome	17076-17109	11	0.676

1. spacer 1.3|1904944|33|LS483435|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034682 (Klebsiella quasipneumoniae strain D120-1 plasmid pD120-1_13kb, complete sequence) position: , mismatch: 6, identity: 0.818

gttggccaaaacctgcactgttggacgttcggg	CRISPR spacer
ggtgtgtaaaacctgcacttttggacgttccgg	Protospacer
* **  .************ ********** **

2. spacer 1.10|1905399|34|LS483435|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021468 (Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1) position: , mismatch: 8, identity: 0.765

tccgcatcatcggcagccgggcctggctgaccct--	CRISPR spacer
tccacatcatcggcggccgggcctg--cggcctgtt	Protospacer
***.**********.**********  .*.**.

3. spacer 1.1|1904813|35|LS483435|CRISPRCasFinder,CRT matches to MF919533 (Propionibacterium phage Supernova, complete genome) position: , mismatch: 9, identity: 0.743

cactcaccaccaccgtcatcatccaaccctaggag	CRISPR spacer
cctacaccaccaccgacatcatccaagccgcgcaa	Protospacer
* . *********** ********** **  * *.

4. spacer 1.10|1905399|34|LS483435|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

tccgcatcatcggcagccgggcctggctgaccct	CRISPR spacer
gcaggatcatcggcagccgggcttggttgtgatt	Protospacer
 * * *****************.***.**   .*

5. spacer 1.10|1905399|34|LS483435|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 10, identity: 0.706

tccgcatcatcggcagccgggcctggctgaccct	CRISPR spacer
gcaggatcatcggcaggcgggcctggttgtggtc	Protospacer
 * * *********** *********.**   ..

6. spacer 1.10|1905399|34|LS483435|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 10, identity: 0.706

tccgcatcatcggcagccgggcctggctgaccct	CRISPR spacer
gcaggatcatcggcaggcgggcctggttgtggtc	Protospacer
 * * *********** *********.**   ..

7. spacer 1.10|1905399|34|LS483435|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 10, identity: 0.706

tccgcatcatcggcagccgggcctggctgaccct	CRISPR spacer
gcaggatcatcggcaggcgggcctggttgtggtc	Protospacer
 * * *********** *********.**   ..

8. spacer 1.10|1905399|34|LS483435|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 10, identity: 0.706

tccgcatcatcggcagccgggcctggctgaccct	CRISPR spacer
gcaggatcatcggcaggcgggcctggttgtgatc	Protospacer
 * * *********** *********.**   ..

9. spacer 1.10|1905399|34|LS483435|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029986 (Sphingomonas sp. FARSPH plasmid p01, complete sequence) position: , mismatch: 10, identity: 0.706

tccgcatcatcggcagccgggcctggctgaccct	CRISPR spacer
ggcgcatcatcggctggcgggcctggacgtcgag	Protospacer
  ************ * ********* .* *

10. spacer 1.2|1904879|34|LS483435|CRISPRCasFinder,CRT matches to MN508622 (UNVERIFIED: Enterobacter phage EC-W2, complete genome) position: , mismatch: 11, identity: 0.676

ctggcgcagcggatcagccagttctttattgaga	CRISPR spacer
atccgacagcgcatcagccagttcttttttactc	Protospacer
 *   .***** *************** **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

108946 : 159186

Cyanophage(20.0%)

transposase,integrase,tRNA

attL 118596:118617|attR 163516:163537

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH48991.1\|108946_110149_+\|transposase	transposase	NA	NA	NA	NA
SQH48992.1\|110240_111920_+	NAD-dependent DNA ligase C4 zinc finger domain	NA	NA	NA	NA
SQH48993.1\|111916_112321_+	S-adenosylmethionine decarboxylase proenzyme precursor	A0A1D7SEZ2	Cyanophage	1.7e-17	53.1
SQH48994.1\|112445_113864_+	protein GlnA	NA	NA	NA	NA
SQH48995.1\|113966_115166_+	NYN domain	NA	NA	NA	NA
SQH48996.1\|115787_116309_+	periplasmic thioredoxin	NA	NA	NA	NA
SQH48997.1\|116488_117871_-	outer membrane efflux protein	NA	NA	NA	NA
SQH48998.1\|118069_118375_-	Pathogenicity locus	NA	NA	NA	NA
118596:118617	attL	NA	NA	NA	NA
SQH48999.1\|118666_120604_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-39	42.7
SQH49000.1\|120700_121879_-	ABC transporter periplasmic protein	A0A140XAI1	Dickeya_phage	2.3e-06	60.4
SQH49001.1\|122269_122773_+	Uncharacterised protein	NA	NA	NA	NA
SQH49002.1\|123121_123604_+	Uncharacterised protein	NA	NA	NA	NA
SQH49003.1\|124586_124763_+	Uncharacterised protein	NA	NA	NA	NA
SQH49004.1\|124841_125369_+	Uncharacterised protein	NA	NA	NA	NA
SQH49005.1\|125965_126445_+	SMI1 / KNR4 family	NA	NA	NA	NA
SQH49006.1\|127627_128092_+	Uncharacterised protein	NA	NA	NA	NA
SQH49007.1\|128568_130368_+	TpsA2 activation/secretion protein TpsB2	NA	NA	NA	NA
SQH49008.1\|130615_131308_+	Integrase core domain	NA	NA	NA	NA
SQH49009.1\|131465_132914_-	Divergent AAA domain	NA	NA	NA	NA
SQH49010.1\|133007_133766_+	Uncharacterised protein	NA	NA	NA	NA
SQH49011.1\|133926_134637_-\|transposase	IS1106A3 transposase	NA	NA	NA	NA
SQH49012.1\|134765_136109_+	dihydrolipoamide dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	3.3e-97	43.7
SQH49013.1\|136185_136581_-\|transposase	IS1106A3 transposase	NA	NA	NA	NA
SQH49014.1\|136691_136916_+	FMN oxidoreductase CC3083	NA	NA	NA	NA
SQH49015.1\|136983_138747_-	glutathione-regulated potassium-efflux system protein	NA	NA	NA	NA
SQH49016.1\|138877_139843_-	Alkanal monooxygenase alpha chain	NA	NA	NA	NA
SQH49017.1\|140022_140922_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQH49018.1\|141159_142167_-\|transposase	IS1106A3 transposase	NA	NA	NA	NA
SQH49019.1\|142177_142375_-	Uncharacterised protein	NA	NA	NA	NA
SQH49020.1\|142725_143574_-	Uncharacterised protein	NA	NA	NA	NA
SQH49021.1\|144072_144483_-	Uncharacterised protein	NA	NA	NA	NA
SQH49022.1\|144484_146524_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQH49023.1\|146526_148047_-\|integrase	integrase	NA	NA	NA	NA
SQH49024.1\|148033_148990_-	site-specific tyrosine recombinase XerC	NA	NA	NA	NA
SQH49025.1\|149462_149984_-	single-stranded DNA binding protein	F8TUL2	EBPR_podovirus	1.1e-40	60.6
SQH49026.1\|149987_151370_-	Drug resistance translocase family protein	NA	NA	NA	NA
SQH49027.1\|151646_152657_+\|tRNA	tryptophanyl-tRNA synthetase	NA	NA	NA	NA
SQH49028.1\|152727_153513_+	Protein of uncharacterised function (DUF3298)	NA	NA	NA	NA
SQH49029.1\|153597_153981_+	4'-phosphopantetheinyl transferase	NA	NA	NA	NA
SQH49030.1\|154159_154627_-	pilin	NA	NA	NA	NA
SQH49031.1\|154704_155091_-	type IV pilus assembly protein	NA	NA	NA	NA
SQH49032.1\|155287_156505_-	putative hemagglutinin/hemolysin	NA	NA	NA	NA
SQH49033.1\|156840_157500_-	Uncharacterised protein	NA	NA	NA	NA
SQH49034.1\|157516_158164_-	NTP-binding protein TniB	NA	NA	NA	NA
SQH49035.1\|158163_159186_-\|integrase	integrase	NA	NA	NA	NA
163516:163537	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1592930 : 1644359

Burkholderia_phage(21.43%)

portal,terminase,integrase,transposase,tRNA,capsid

attL 1633419:1633435|attR 1654338:1654354

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH50364.1\|1592930_1594034_-\|tRNA	tRNA-specific 2-thiouridylase MnmA	NA	NA	NA	NA
SQH50365.1\|1594531_1595389_-	Replication gene A protein	A0A0M3ULG0	Salmonella_phage	2.9e-30	50.4
SQH50366.1\|1595385_1595985_-	Uncharacterised protein	NA	NA	NA	NA
SQH50367.1\|1596068_1596362_-	Uncharacterised protein	NA	NA	NA	NA
SQH50368.1\|1596351_1596798_-	Uncharacterised protein	NA	NA	NA	NA
SQH50369.1\|1596892_1597177_+	Uncharacterised protein	NA	NA	NA	NA
SQH50370.1\|1597387_1597528_+	Uncharacterised protein	NA	NA	NA	NA
SQH50371.1\|1597720_1598416_+	putative transcriptional regulator	E5FFF8	Burkholderia_phage	2.0e-26	33.5
SQH50372.1\|1598481_1599621_+	Uncharacterised protein	Q7Y4B3	Escherichia_virus	5.7e-58	40.5
SQH50373.1\|1599630_1600638_+	Uncharacterised protein	NA	NA	NA	NA
SQH50374.1\|1600642_1601584_-	DcmB	Q7Y4B5	Escherichia_virus	1.2e-122	67.3
SQH50375.1\|1601667_1602168_-	Head completion/stabilization protein	A0A077K9R2	Ralstonia_phage	7.8e-12	40.2
SQH50376.1\|1602275_1602905_-\|terminase	phage terminase, endonuclease subunit	K4NX86	Burkholderia_phage	3.9e-24	36.6
SQH50377.1\|1602987_1604037_-\|capsid	phage major capsid protein GpN, P2 family	Q19UT3	Mannheimia_phage	1.7e-61	45.0
SQH50378.1\|1604076_1604931_-\|capsid	Presumed capsid scaffolding protein GpO	A0A2H4J928	uncultured_Caudovirales_phage	4.6e-28	44.7
SQH50379.1\|1605090_1606890_+	Terminase, ATPase subunit	E5FFI8	Burkholderia_phage	1.2e-158	50.2
SQH50380.1\|1606903_1607884_+\|capsid,portal	phage capsid portal protein	A4JWV0	Burkholderia_virus	4.1e-81	47.5
SQH50381.1\|1608594_1609980_-	pyridine nucleotide transhydrogenase	NA	NA	NA	NA
SQH50382.1\|1610078_1611620_-	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA
SQH50383.1\|1611907_1612315_+	lactoylglutathione lyase	NA	NA	NA	NA
SQH50384.1\|1612399_1613692_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.6e-96	52.7
SQH50385.1\|1613814_1615227_-	NadC family protein	NA	NA	NA	NA
SQH50386.1\|1615406_1615850_-	Uncharacterised protein	NA	NA	NA	NA
SQH50387.1\|1616131_1616626_-	Uncharacterised protein	NA	NA	NA	NA
SQH50388.1\|1616816_1618442_-	putative ABC-transporter, ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-57	28.1
SQH50389.1\|1618542_1619034_-	Membrane protein	NA	NA	NA	NA
SQH50390.1\|1619173_1620280_-	FtsW	NA	NA	NA	NA
SQH50391.1\|1620276_1622331_-	penicillin-binding protein 2	NA	NA	NA	NA
SQH50392.1\|1622327_1622831_-	rod shape-determining protein MreD	NA	NA	NA	NA
SQH50393.1\|1622837_1623713_-	rod shape-determining protein MreC	NA	NA	NA	NA
SQH50394.1\|1623731_1624775_-	cell division protein	NA	NA	NA	NA
SQH50395.1\|1624970_1625261_+\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit C	NA	NA	NA	NA
SQH50396.1\|1625289_1625775_+	Uncharacterised protein	NA	NA	NA	NA
SQH50397.1\|1625657_1625939_-	Uncharacterised protein	NA	NA	NA	NA
SQH50398.1\|1625992_1626592_+	Uncharacterised protein	NA	NA	NA	NA
SQH50399.1\|1626715_1627297_+	Uncharacterised protein	NA	NA	NA	NA
SQH50400.1\|1627376_1628825_+\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit A	NA	NA	NA	NA
SQH50401.1\|1629111_1631049_+	ATP-dependent DNA helicase pcrA	NA	NA	NA	NA
SQH50402.1\|1631180_1631801_+	Predicted membrane protein	NA	NA	NA	NA
SQH50403.1\|1631906_1633337_+\|tRNA	aspartyl/glutamyl-tRNA amidotransferase subunit B	NA	NA	NA	NA
1633419:1633435	attL	NA	NA	NA	NA
SQH50404.1\|1633502_1633922_+	Uncharacterised protein	NA	NA	NA	NA
SQH50405.1\|1634140_1634443_+	Uncharacterised protein	NA	NA	NA	NA
SQH50406.1\|1635214_1635541_+	Uncharacterised protein	NA	NA	NA	NA
SQH50407.1\|1636039_1636318_+	putative Ner-like DNA-binding prophage protein	F6MII4	Haemophilus_phage	1.0e-13	45.1
SQH50408.1\|1636426_1636798_+	putative N-6adenine-specific DNA methylase	A0A0R6PHB4	Moraxella_phage	3.5e-25	48.2
SQH50409.1\|1636990_1637527_-	Uncharacterised protein	NA	NA	NA	NA
SQH50410.1\|1637596_1637884_+	Uncharacterised protein	NA	NA	NA	NA
SQH50411.1\|1637948_1638593_+	integral membrane protein	NA	NA	NA	NA
SQH50412.1\|1638661_1639105_-	Molybdopterin adenylyltransferase	NA	NA	NA	NA
SQH50413.1\|1639138_1639240_-	Molybdopterin adenylyltransferase	NA	NA	NA	NA
SQH50414.1\|1639602_1640169_-	Respiratory nitrate reductase 1 alpha chain	NA	NA	NA	NA
SQH50415.1\|1640253_1643115_-	Respiratory nitrate reductase 1 alpha chain	NA	NA	NA	NA
SQH50416.1\|1643229_1643577_+\|transposase	transposase	NA	NA	NA	NA
SQH50417.1\|1643762_1644359_+\|integrase	integrase	NA	NA	NA	NA
1654338:1654354	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2002823 : 2036317

Bacillus_phage(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH50778.1\|2002823_2003000_+\|transposase	IS1016 transposase	NA	NA	NA	NA
SQH50779.1\|2003049_2003559_+\|transposase	IS1016 group transposase	NA	NA	NA	NA
SQH50780.1\|2003576_2004266_-	Uncharacterised protein	NA	NA	NA	NA
SQH50781.1\|2004549_2004729_+\|transposase	IS1016 transposase	NA	NA	NA	NA
SQH50782.1\|2004759_2005668_+\|transposase	IS1106A3 transposase	NA	NA	NA	NA
SQH50783.1\|2005730_2006015_+	Uncharacterised protein	NA	NA	NA	NA
SQH50784.1\|2006028_2006319_+	Citrate lyase beta subunit	NA	NA	NA	NA
SQH50785.1\|2006370_2007069_+	Site-specific recombinase XerD	A0A0M3LQJ3	Mannheimia_phage	9.8e-61	47.8
SQH50786.1\|2007228_2007600_+	ribosome-binding factor A	NA	NA	NA	NA
SQH50787.1\|2007601_2008132_+	Uncharacterised protein	NA	NA	NA	NA
SQH50788.1\|2008239_2009154_+\|tRNA	tRNA pseudouridine synthase B	NA	NA	NA	NA
SQH50789.1\|2009704_2010454_+	Uncharacterised protein	NA	NA	NA	NA
SQH50790.1\|2010659_2012183_-	fumarate hydratase	NA	NA	NA	NA
SQH50791.1\|2012363_2013026_+	oxidoreductase, NAD(P)H-flavin	NA	NA	NA	NA
SQH50792.1\|2013103_2013559_+	Uncharacterised protein	NA	NA	NA	NA
SQH50793.1\|2013644_2014217_-\|tRNA	peptidyl-tRNA hydrolase	NA	NA	NA	NA
SQH50794.1\|2014224_2014515_-	Protein rnfH	NA	NA	NA	NA
SQH50795.1\|2014507_2014939_-	oligoketide cyclase/lipid transport protein	NA	NA	NA	NA
SQH50796.1\|2015052_2016099_-	Inner membrane ABC transporter permease protein yejB	NA	NA	NA	NA
SQH50797.1\|2016127_2016331_-	Protein of uncharacterised function (DUF2788)	NA	NA	NA	NA
SQH50798.1\|2016466_2017636_-	putative O-succinylhomoserine sulfhydrolase	NA	NA	NA	NA
SQH50799.1\|2017771_2018449_-	putative lipoprotein releasing factor ATP-binding protein	G9BWD6	Planktothrix_phage	8.1e-36	38.6
SQH50800.1\|2018441_2019692_-	lipoprotein releasing system transmembrane protein	NA	NA	NA	NA
SQH50801.1\|2019859_2020795_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	3.9e-113	78.1
SQH50802.1\|2020972_2021761_-	RNA methyltransferase	NA	NA	NA	NA
SQH50803.1\|2022184_2023462_-	putative O-succinylhomoserine sulfhydrolase	A0A0B5JD48	Pandoravirus	2.5e-14	28.5
SQH50804.1\|2023654_2026420_-	DNA gyrase subunit A	A0A172JHV7	Bacillus_phage	1.6e-93	32.3
SQH50805.1\|2027402_2027561_+	Predicted protein tyrosine phosphatase	NA	NA	NA	NA
SQH50806.1\|2027653_2028196_-	lipoprotein	A0A1V0DZX6	Clostridioides_phage	3.8e-20	38.5
SQH50807.1\|2028279_2029245_-	PhoH-related protein	H6X2N1	Pseudomonas_phage	3.2e-46	49.8
SQH50808.1\|2029422_2029920_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase	NA	NA	NA	NA
SQH50809.1\|2030031_2030682_+	Deoxyguanosine kinase	S5M586	Bacillus_phage	1.7e-11	25.4
SQH50810.1\|2030688_2031477_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.7e-40	35.3
SQH50811.1\|2031655_2032477_+	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA
SQH50812.1\|2032574_2032964_-	Ribonuclease, putative	NA	NA	NA	NA
SQH50813.1\|2033400_2034408_+\|transposase	IS1106A3 transposase	NA	NA	NA	NA
SQH50814.1\|2035326_2035635_-	Domain of uncharacterised function (DUF3578)	NA	NA	NA	NA
SQH50815.1\|2035870_2036317_+\|transposase	transposase, IS30 family	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage