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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS483423 Jonesia denitrificans strain NCTC10816 genome assembly, chromosome: 1 1 crisprs DEDDh,csa3,DinG,cas4,WYL,cas3 0 3 2 0

Results visualization

1. LS483423
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483423_1 57663-57751 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LS483423_2 2.1|1925758|34|LS483423|CRISPRCasFinder 1925758-1925791 34 NZ_CP015446 Streptomyces sp. S8 plasmid unnamed, complete sequence 46058-46091 7 0.794
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 NZ_AP014579 Burkholderia sp. RPE67 plasmid p1, complete sequence 179626-179655 7 0.767
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 1485873-1485902 7 0.767
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 LC589952 Enterobacter phage vB_EkoM5VN DNA, complete genome 51650-51679 8 0.733
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 KX431560 Cronobacter phage vB_CsaM_leN, complete genome 2787-2816 8 0.733
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 NC_048646 Cronobacter phage vB_CsaM_leE, complete genome 2787-2816 8 0.733
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 MN508621 UNVERIFIED: Enterobacter phage EC-W1, complete genome 18717-18746 8 0.733
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 MT341500 Enterobacter phage EBPL, complete genome 5018-5047 8 0.733
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 JN882287 Cronobacter phage vB_CsaM_GAP161, complete genome 1888-1917 8 0.733
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 NC_048645 Cronobacter phage vB_CsaM_leB, complete genome 2787-2816 8 0.733
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 NZ_CP029356 Azospirillum sp. CFH 70021 plasmid unnamed1 10228-10257 8 0.733
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 MN508623 UNVERIFIED: Enterobacter phage EC-F1, complete genome 127401-127430 8 0.733
LS483423_4 4.1|2598120|30|LS483423|CRISPRCasFinder 2598120-2598149 30 MN508624 UNVERIFIED: Enterobacter phage EC-F2, complete genome 127957-127986 8 0.733
LS483423_1 1.1|57691|33|LS483423|CRISPRCasFinder 57691-57723 33 NZ_CP034939 Pectobacterium odoriferum strain JK2.1 plasmid p.Jk2_1, complete sequence 92904-92936 10 0.697
LS483423_1 1.1|57691|33|LS483423|CRISPRCasFinder 57691-57723 33 NZ_CP027261 Pectobacterium parmentieri strain IFB5427 plasmid pPAR01, complete sequence 59101-59133 10 0.697

1. spacer 2.1|1925758|34|LS483423|CRISPRCasFinder matches to NZ_CP015446 (Streptomyces sp. S8 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

-tcacagtgccccctccacctcccccgaacacacc	CRISPR spacer
gtcaccg-gccacctccacctcccccgcacaccgg	Protospacer
 **** * *** *************** ****   

2. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
cgcttcttcatggggctgggactgggcgcg	Protospacer
 .*.*  **.**************** ***

3. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.767

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
cgcttcttcatggggctgggactgggcgcg	Protospacer
 .*.*  **.**************** ***

4. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to LC589952 (Enterobacter phage vB_EkoM5VN DNA, complete genome) position: , mismatch: 8, identity: 0.733

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
gaactgatcggggcgctgggactgggtagt	Protospacer
.* ******* ** ************ .  

5. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to KX431560 (Cronobacter phage vB_CsaM_leN, complete genome) position: , mismatch: 8, identity: 0.733

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
gaactgatcggggcgctgggactgggtagc	Protospacer
.* ******* ** ************ .  

6. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to NC_048646 (Cronobacter phage vB_CsaM_leE, complete genome) position: , mismatch: 8, identity: 0.733

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
gaactgatcggggcgctgggactgggtagc	Protospacer
.* ******* ** ************ .  

7. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to MN508621 (UNVERIFIED: Enterobacter phage EC-W1, complete genome) position: , mismatch: 8, identity: 0.733

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
gaactgatcggggcgctgggactgggtagc	Protospacer
.* ******* ** ************ .  

8. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to MT341500 (Enterobacter phage EBPL, complete genome) position: , mismatch: 8, identity: 0.733

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
gaactgatcggggcgctgggactgggtagt	Protospacer
.* ******* ** ************ .  

9. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to JN882287 (Cronobacter phage vB_CsaM_GAP161, complete genome) position: , mismatch: 8, identity: 0.733

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
gaactgatcggggcgctgggactgggtagt	Protospacer
.* ******* ** ************ .  

10. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to NC_048645 (Cronobacter phage vB_CsaM_leB, complete genome) position: , mismatch: 8, identity: 0.733

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
gaactgatcggggcgctgggactgggtagc	Protospacer
.* ******* ** ************ .  

11. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 8, identity: 0.733

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
gacctgatccaggggctgggactgctcggc	Protospacer
.********  *************   *  

12. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to MN508623 (UNVERIFIED: Enterobacter phage EC-F1, complete genome) position: , mismatch: 8, identity: 0.733

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
gaactgatcggggcgctgggactgggtagt	Protospacer
.* ******* ** ************ .  

13. spacer 4.1|2598120|30|LS483423|CRISPRCasFinder matches to MN508624 (UNVERIFIED: Enterobacter phage EC-F2, complete genome) position: , mismatch: 8, identity: 0.733

aacctgatcgtggggctgggactgggggcg	CRISPR spacer
gaactgatcggggcgctgggactgggtagt	Protospacer
.* ******* ** ************ .  

14. spacer 1.1|57691|33|LS483423|CRISPRCasFinder matches to NZ_CP034939 (Pectobacterium odoriferum strain JK2.1 plasmid p.Jk2_1, complete sequence) position: , mismatch: 10, identity: 0.697

ggtgcggggtgaggtgagggtggggcggttgcg	CRISPR spacer
tggatttggggaggtgagggtggggcgattggt	Protospacer
 * ..  ** *****************.***  

15. spacer 1.1|57691|33|LS483423|CRISPRCasFinder matches to NZ_CP027261 (Pectobacterium parmentieri strain IFB5427 plasmid pPAR01, complete sequence) position: , mismatch: 10, identity: 0.697

ggtgcggggtgaggtgagggtggggcggttgcg	CRISPR spacer
tggatttggggaggtgagggtggggcgattggt	Protospacer
 * ..  ** *****************.***  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2328333 : 2348207 37 Mycobacterium_phage(22.22%) portal,terminase,capsid NA
DBSCAN-SWA_2 2461727 : 2482923 45 Gordonia_phage(22.22%) portal,terminase,capsid NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage