CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483424	Bordetella parapertussis strain NCTC10520 genome assembly, chromosome: 1	8 crisprs	cas3,DinG,DEDDh,csa3,RT	1	2	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483424_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483424_1

614862-614955

Orphan

Consensus_repeat	Method
GTGCCTGTCCCGGCGGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483424_1

>merge|LS483424|1|614862-614955|CRISPRCasFinder
GTGCCTGTCCCGGCGGGGACAGGCACGCCCGCACAGCGGGCGCAGCGTGGGGGTTTTCCTGGGCCCGGGTGCCTGTCCCGGCGGGGACAGGCAC

>LS483424|1|1|614862-614955|CRISPRCasFinder
GTGCCTGTCCCGGCGGGGACAGGCAC	GCCCGCACAGCGGGCGCAGCGTGGGGGTTTTCCTGGGCCCGG
GTGCCTGTCCCGGCGGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483424.1\|SQH15493.1\|608285_609209_-\|acetoin-dehydrogenase-E2-subunit-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|378820
LS483424.1\|SQH15508.1\|617299_617818_-\|putative-Mg(2+)-transport-ATPase	unknown	unknown	gnl\|CDD\|224204
LS483424.1\|SQH15502.1\|612990_613461_+\|Putative-universal-stress-protein-SAV1710	unknown	unknown	gnl\|CDD\|366180
LS483424.1\|SQH15514.1\|620105_620891_+\|Probable-enoyl-CoA-hydratase-echA8	unknown	unknown	gnl\|CDD\|181723
LS483424.1\|SQH15491.1\|607824_608280_+\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|226610
LS483424.1\|SQH15524.1\|625335_626529_+\|Acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180775
LS483424.1\|SQH15522.1\|624241_625270_+\|putative-acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|366103
LS483424.1\|SQH15504.1\|613603_614824_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|225995
LS483424.1\|SQH15498.1\|611012_612458_+\|2-aminoadipate-transaminase	unknown	unknown	gnl\|CDD\|224089
LS483424.1\|SQH15500.1\|612557_612902_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|225984
LS483424.1\|SQH15495.1\|609298_609958_-\|Cysteine/O-acetylserine-efflux-protein	unknown	unknown	gnl\|CDD\|224199
LS483424.1\|SQH15497.1\|609954_610929_-\|carboxylate/amino-acid/amine-transporter	unknown	unknown	gnl\|CDD\|223769
LS483424.1\|SQH15520.1\|623042_624215_+\|Acyl-CoA-dehydrogenase-fadE12	unknown	unknown	gnl\|CDD\|173841
LS483424.1\|SQH15510.1\|617928_618684_+\|integral-membrane-protein,-YkoY-family	unknown	unknown	gnl\|CDD\|223930
LS483424.1\|SQH15518.1\|621939_622857_-\|Ben-and-cat-operon-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
LS483424.1\|SQH15512.1\|618879_620109_+\|Formyl-coenzyme-A-transferase	unknown	unknown	gnl\|CDD\|367110
LS483424.1\|SQH15489.1\|606910_607828_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|212118
LS483424.1\|SQH15487.1\|606496_606892_-\|GtrA-like-protein	unknown	unknown	gnl\|CDD\|377229
LS483424.1\|SQH15506.1\|615185_617303_+\|Elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
LS483424.1\|SQH15516.1\|620957_621929_+\|Argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|270234

Protein	Function_ID	Function_description	E-value
LS483424.1\|SQH15493.1\|608285_609209_-\|acetoin-dehydrogenase-E2-subunit-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	6.02976e-19
LS483424.1\|SQH15508.1\|617299_617818_-\|putative-Mg(2+)-transport-ATPase	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.18053e-44
LS483424.1\|SQH15502.1\|612990_613461_+\|Putative-universal-stress-protein-SAV1710	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
LS483424.1\|SQH15514.1\|620105_620891_+\|Probable-enoyl-CoA-hydratase-echA8	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	3.47115e-155
LS483424.1\|SQH15491.1\|607824_608280_+\|Predicted-membrane-protein	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	1.97335e-52
LS483424.1\|SQH15524.1\|625335_626529_+\|Acetyl-CoA-acetyltransferase	gnl\|CDD\|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	2.86943e-175
LS483424.1\|SQH15522.1\|624241_625270_+\|putative-acyl-CoA-dehydrogenase	gnl\|CDD\|366103	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain. C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.	1.19321e-12
LS483424.1\|SQH15504.1\|613603_614824_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.63558e-80
LS483424.1\|SQH15498.1\|611012_612458_+\|2-aminoadipate-transaminase	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.70342e-111
LS483424.1\|SQH15500.1\|612557_612902_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
LS483424.1\|SQH15495.1\|609298_609958_-\|Cysteine/O-acetylserine-efflux-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	4.25651e-32
LS483424.1\|SQH15497.1\|609954_610929_-\|carboxylate/amino-acid/amine-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.6581e-12
LS483424.1\|SQH15520.1\|623042_624215_+\|Acyl-CoA-dehydrogenase-fadE12	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	3.96966e-84
LS483424.1\|SQH15510.1\|617928_618684_+\|integral-membrane-protein,-YkoY-family	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
LS483424.1\|SQH15518.1\|621939_622857_-\|Ben-and-cat-operon-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.19908e-60
LS483424.1\|SQH15512.1\|618879_620109_+\|Formyl-coenzyme-A-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	6.62375e-118
LS483424.1\|SQH15489.1\|606910_607828_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|212118	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria. This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.	1.57664e-91
LS483424.1\|SQH15487.1\|606496_606892_-\|GtrA-like-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	8.84202e-15
LS483424.1\|SQH15506.1\|615185_617303_+\|Elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
LS483424.1\|SQH15516.1\|620957_621929_+\|Argininosuccinate-lyase	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117

>LS483424.1|SQH15504.1|613603_614824_+|Transposase-and-inactivated-derivatives
MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCEQCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVTDRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFALHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYELEIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNRDNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGIAALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRAAFPGNAR
>LS483424.1|SQH15502.1|612990_613461_+|Putative-universal-stress-protein-SAV1710
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>LS483424.1|SQH15500.1|612557_612902_+|Uncharacterized-protein-conserved-in-bacteria
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>LS483424.1|SQH15498.1|611012_612458_+|2-aminoadipate-transaminase
MTVATSSPSGAGWQPVRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRRGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPTGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYRRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>LS483424.1|SQH15497.1|609954_610929_-|carboxylate/amino-acid/amine-transporter
MRRHGKPGRPLSPIQRQIFPMSPPSAQASAPSASPHAPSWEGYGYGLIGVLVFALTLPMTRLAVGELSPLLVGLGRALLAAVPAAALLWLTRSRRPDRAEWSGIVLAAVGIVVGWPVASTLAMASVPAAHGAVFNGLLPLSTAVFAAWRSGERPSPAFWSFAVLGAVLVAGYALRQGHGALQPGDLWLLLAVVLGGMGYAEGARASRTLGGWRTICWALVVSVPALLPAVLWLAHDAAWPSLPVAGAFAYLAFGSMFLGFFAWYRGLAIGGIARVGQIQLLQPFLTVVAAALLFNEQVEPITYVFAVAVVLVIAGGRRAMVRKA
>LS483424.1|SQH15495.1|609298_609958_-|Cysteine/O-acetylserine-efflux-protein
MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSGLTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLERLPWLYSTLKYGGAAYLLYLAWKIATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIATLVCGVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG
>LS483424.1|SQH15493.1|608285_609209_-|acetoin-dehydrogenase-E2-subunit-dihydrolipoyllysine-residue-acetyltransferase
MVCLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQRWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWTGMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLGGAIAIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTTLMLLLHGTADRVVPHTMSDELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVADFVRDAGRGYAGRQGAPTPLTASRPGT
>LS483424.1|SQH15491.1|607824_608280_+|Predicted-membrane-protein
MSSSSKQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDMGVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTMPVRVAHAVGFELGLVLIIVLLAAWWLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA
>LS483424.1|SQH15489.1|606910_607828_+|Uncharacterized-protein-conserved-in-bacteria
MRNQAGDVRCRRIAVCGDDFGMNEAIDGALIELAGAGRLSAVSCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLDPDWIDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAPGLQFGLPLAEAAKARLIGALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHHWLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHPELGTWLARNGLRIVRLSQVRGRQASQESGKVRNVPHSGSFRRLASRL
>LS483424.1|SQH15487.1|606496_606892_-|GtrA-like-protein
MRGLLRQIAWFIAVGCAAAATHWAVAVACVEWAGLPPLGANVVGWLLAFVVSFTGHFRLTFRHLAASWTIAARRFFLVSALGFAINELSYAWLLHATSLPYDVLLALVLIGLAFLTFVASRLWAFRHRHAP
>LS483424.1|SQH15506.1|615185_617303_+|Elongation-factor-G
MTRRTSIERYRNIGISAHIDAGKTTTTERILFYTGITHKLGEVHEGAATMDWMEQERGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWRQANKYGVPRIAFVNKMDRVGADFFRVQRQIVERLKGDAVPIQIPVGAEDHFEGVVDLVKMKAIIWDDASQGVRFEYRDIPPELQAQAEQWREKMIEKAAEANEALLEKYLSGQPLSEDEIKSGLRARTVANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAIIGHDERDREIERHPADDEPFSALAFKIMTDPFVGQLVFFRVYSGVVKSGDSVLNPLKSKKERLGRILQMHANERREISEVYAGDIAAAVGIKEITTGDTLTDPAHVIILERMTFPEPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREFGVEANVGKPQVAYRETIRSTVTDVEGKFVKQSGGRGQYGHVVLKLEPQEQGKGYEFVDAIKGGVVPREFIPAVDRGVRETLNTGVLAGYPVVDVKVTLVFGSYHDVDSNENAFRMAASMAFKEGMRRAKPVLLEPMMHVEVETPEDFTGNVMGDLSSRRGMVQGMEDIAGGGGKLVRAEVPLAEMFGYSTSLRSLTQGRATYSMEFKHYAEAPRQVAEQIIAARGSGAAARG
>LS483424.1|SQH15508.1|617299_617818_-|putative-Mg(2+)-transport-ATPase
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGAIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRHLEKRIAARDDKRVVAQPPP
>LS483424.1|SQH15510.1|617928_618684_+|integral-membrane-protein,-YkoY-family
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>LS483424.1|SQH15512.1|618879_620109_+|Formyl-coenzyme-A-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAGHRRGPPASGGNRS
>LS483424.1|SQH15514.1|620105_620891_+|Probable-enoyl-CoA-hydratase-echA8
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSRQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVPEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>LS483424.1|SQH15516.1|620957_621929_+|Argininosuccinate-lyase
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>LS483424.1|SQH15518.1|621939_622857_-|Ben-and-cat-operon-transcriptional-regulator
MELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>LS483424.1|SQH15520.1|623042_624215_+|Acyl-CoA-dehydrogenase-fadE12
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAAGAPVSAHWIADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGASEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRRDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>LS483424.1|SQH15522.1|624241_625270_+|putative-acyl-CoA-dehydrogenase
MVSTMQQDLYETFARALAGLCPLERVRELEAAADPRAGAARAWNEVDALGYGDALSPAEHGGAGLSLADAEGLLRAAGAMALPFPFADTLLARALLRAAGQAVPDGPIALGVALPHGAGWRCAPIAGVALAQAVAVEHDGCLALWPAPDAVQPGLFRPRASGAPAWRGTPAQAGRAGAPAGAVQAWRNAADAAGMAGAMQAVLDRCVAYVQERQQFGRALGRFQAVQQDISMLAEQVAAVAMAARLACASGALFPDPALAACARLRACEAVPVVCALAHAVHGAIGITEELPLGLYTARLHEWRATGMSEDDCAELLGRRVLADGERTLLDVVRGMVSAAHA
>LS483424.1|SQH15524.1|625335_626529_+|Acetyl-CoA-acetyltransferase
MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQAGLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLPTDVQATTLSKMCGSGMKAAMLAHDMLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRLMGHYADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPIAGLARRGAPAAMVAVDETPGLCDVSRLASLKPVFNADGTVTAGNASSISDGAAALVLTRQAHAERLGLAPQARIVGHATAALPPGQFPAAPVRAIARLFERVGWDRDSVDLFEINEAFAVVTMIALRELGLPAERVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAIERA

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Crispr_ID: LS483424_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483424_2

825541-825625

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483424_2

>merge|LS483424|2|825541-825625|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAGGGTGCCTGTCCCCGCGGGGACAG

>LS483424|2|2|825541-825625|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAG
GGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483424.1\|SQH15901.1\|831334_832726_+\|Fumarate-hydratase-class-II	unknown	unknown	gnl\|CDD\|234779
LS483424.1\|SQH15903.1\|832742_833654_-\|auxin-efflux-carrier	unknown	unknown	gnl\|CDD\|223751
LS483424.1\|SQH15896.1\|829330_830575_-\|N-acetylmuramoyl-L-alanine-amidase-AmiC-precursor	unknown	unknown	gnl\|CDD\|182376
LS483424.1\|SQH15893.1\|826573_828463_-\|DNA-mismatch-repair-protein-mutL	unknown	unknown	gnl\|CDD\|234630
LS483424.1\|SQH15886.1\|823526_824228_-\|DnaA-homolog-protein-hda	unknown	unknown	gnl\|CDD\|236347
LS483424.1\|SQH15874.1\|816492_818595_+\|Neu5Ac-permease	unknown	unknown	gnl\|CDD\|129868
LS483424.1\|SQH15888.1\|824480_825530_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
LS483424.1\|SQH15891.1\|825635_826577_-\|tRNA-dimethylallyltransferase	unknown	unknown	gnl\|CDD\|234626
LS483424.1\|SQH15899.1\|830646_831183_-\|ADP-binding-protein	unknown	unknown	gnl\|CDD\|223873
LS483424.1\|SQH15884.1\|822831_823530_-\|Phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|319796
LS483424.1\|SQH15878.1\|820012_820969_+\|Argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|270296
LS483424.1\|SQH15880.1\|820987_821479_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase	unknown	unknown	gnl\|CDD\|172582
LS483424.1\|SQH15906.1\|834906_835803_-\|Cyn-operon-transcriptional-activator	unknown	unknown	gnl\|CDD\|176107
LS483424.1\|SQH15908.1\|835909_837664_+\|Gamma-glutamyltranspeptidase-precursor	unknown	unknown	gnl\|CDD\|223482
LS483424.1\|SQH15872.1\|815281_816322_-\|Neu5Ac-binding-protein	unknown	unknown	gnl\|CDD\|270320
LS483424.1\|SQH15905.1\|833858_834842_+\|Argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|270295
LS483424.1\|SQH15895.1\|828549_829188_+\|SNARE-associated-Golgi-protein	unknown	unknown	gnl\|CDD\|182775
LS483424.1\|SQH15871.1\|814494_815208_-\|HTH-type-transcriptional-regulator-mcbR	unknown	unknown	gnl\|CDD\|224715
LS483424.1\|SQH15882.1\|821475_822831_-\|Poly(A)-polymerase-precursor	unknown	unknown	gnl\|CDD\|130997
LS483424.1\|SQH15876.1\|818591_819986_+\|MmgE/PrpD-family	unknown	unknown	gnl\|CDD\|377179

Protein	Function_ID	Function_description	E-value
LS483424.1\|SQH15901.1\|831334_832726_+\|Fumarate-hydratase-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
LS483424.1\|SQH15903.1\|832742_833654_-\|auxin-efflux-carrier	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.49124e-41
LS483424.1\|SQH15896.1\|829330_830575_-\|N-acetylmuramoyl-L-alanine-amidase-AmiC-precursor	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	7.29619e-86
LS483424.1\|SQH15893.1\|826573_828463_-\|DNA-mismatch-repair-protein-mutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
LS483424.1\|SQH15886.1\|823526_824228_-\|DnaA-homolog-protein-hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	8.14329e-101
LS483424.1\|SQH15874.1\|816492_818595_+\|Neu5Ac-permease	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.19046e-96
LS483424.1\|SQH15888.1\|824480_825530_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
LS483424.1\|SQH15891.1\|825635_826577_-\|tRNA-dimethylallyltransferase	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.00887e-155
LS483424.1\|SQH15899.1\|830646_831183_-\|ADP-binding-protein	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	5.46598e-54
LS483424.1\|SQH15884.1\|822831_823530_-\|Phosphoserine-phosphatase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.35754e-64
LS483424.1\|SQH15878.1\|820012_820969_+\|Argininosuccinate-lyase	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.01101e-118
LS483424.1\|SQH15880.1\|820987_821479_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase	gnl\|CDD\|172582	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	1.33001e-89
LS483424.1\|SQH15906.1\|834906_835803_-\|Cyn-operon-transcriptional-activator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.752e-38
LS483424.1\|SQH15908.1\|835909_837664_+\|Gamma-glutamyltranspeptidase-precursor	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
LS483424.1\|SQH15872.1\|815281_816322_-\|Neu5Ac-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.18155e-85
LS483424.1\|SQH15905.1\|833858_834842_+\|Argininosuccinate-lyase	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	3.25651e-157
LS483424.1\|SQH15895.1\|828549_829188_+\|SNARE-associated-Golgi-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	1.10927e-69
LS483424.1\|SQH15871.1\|814494_815208_-\|HTH-type-transcriptional-regulator-mcbR	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.62547e-43
LS483424.1\|SQH15882.1\|821475_822831_-\|Poly(A)-polymerase-precursor	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	7.39002e-147
LS483424.1\|SQH15876.1\|818591_819986_+\|MmgE/PrpD-family	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	3.67215e-107

>LS483424.1|SQH15888.1|824480_825530_+|Phosphoribosylformylglycinamidine-cyclo-ligase
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLVGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQDGMAQTVVV
>LS483424.1|SQH15886.1|823526_824228_-|DnaA-homolog-protein-hda
MNRQLLLDVLPAPAPTLNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITTPLLRAMLADPHSQAT
>LS483424.1|SQH15884.1|822831_823530_-|Phosphoserine-phosphatase
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTAQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>LS483424.1|SQH15882.1|821475_822831_-|Poly(A)-polymerase-precursor
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLAQWWMDLANGDDATRAEMIEETAHLPREASDAPAQKRRRPRRRPSNRPREPQ
>LS483424.1|SQH15880.1|820987_821479_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridinepyrophosphokinase
MNGSPASALAYVGLGANLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVDAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRIHERAFVLAPLCELAPGLRLAQGDCAALLAALEDQAIEPLR
>LS483424.1|SQH15878.1|820012_820969_+|Argininosuccinate-lyase
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGIQALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>LS483424.1|SQH15876.1|818591_819986_+|MmgE/PrpD-family
MTMNQAVSPLAGTPAVSAELARFAATSRWEDVPQAVRHEGRRSLLNYFAVALAAARDPVLDTATRTYARFASDARASLVGRARRLDMLNAAALNAMAANVYDFDDTHHPTIIHPTAPVAPALFALAETRPLSGAQLLHAFVLGVEATCRIGNAMSPGHYARGWHITSTCGVFGAALGAARCLGLPGDAMVAALGCAAVQAGGLVETLGTAAKSISVGNAARNGLLSALLAAEGFDGPPQPLEGVRGYLRVAADAPDIAAVSAGLGERWEVLNNTYKPYPCGVVLNPVIDACLALAADPRIAGGGWAAIERIELTGHPLLKQRTDRPGVATGRQSQVSAQHAVAVALVRGRAGLPEFSDEAVADAGLRALGLRLGFRDDASMSVDAVKVRIAFQDGTLLEREVQAARGSRERPLQDGEIEEKLRELCRHGGARVDADRLIEAVWTLDEAGDAAAVMRLAAEQPAA
>LS483424.1|SQH15874.1|816492_818595_+|Neu5Ac-permease
MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRACGALATVALLLMALSMCYEIFSRYLFNAPTAWATEISGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTPQWMPELAVSVGIVVFCMSILVDIYRLSPPAQAWRRWLTPTLLALLAAALVALGANAVPMAAGGRFDWGMALIVAALLACAWAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMIERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>LS483424.1|SQH15872.1|815281_816322_-|Neu5Ac-binding-protein
MSQRFPLPRGFQAALAAAALCTASWSGAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPINGWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTTLGKSASN
>LS483424.1|SQH15871.1|814494_815208_-|HTH-type-transcriptional-regulator-mcbR
MTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLADAAATAE
>LS483424.1|SQH15891.1|825635_826577_-|tRNA-dimethylallyltransferase
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAKFRADALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQRIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>LS483424.1|SQH15893.1|826573_828463_-|DNA-mismatch-repair-protein-mutL
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVDHVLPVQAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDAAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>LS483424.1|SQH15895.1|828549_829188_+|SNARE-associated-Golgi-protein
MLDFFNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>LS483424.1|SQH15896.1|829330_830575_-|N-acetylmuramoyl-L-alanine-amidase-AmiC-precursor
MRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRYFTANPPLARVGDVS
>LS483424.1|SQH15899.1|830646_831183_-|ADP-binding-protein
MSAPPTTLCLHLPDEAATEDLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNAIVPPPTARSLPAPPPADA
>LS483424.1|SQH15901.1|831334_832726_+|Fumarate-hydratase-class-II
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVVAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>LS483424.1|SQH15903.1|832742_833654_-|auxin-efflux-carrier
MSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAVYGLARHSGNGLLRELARNPLLVSTLLGLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPN
>LS483424.1|SQH15905.1|833858_834842_+|Argininosuccinate-lyase
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSLGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD
>LS483424.1|SQH15906.1|834906_835803_-|Cyn-operon-transcriptional-activator
MRLRHIEIFEAIRRTGSLTEAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATRETEILAPEVARLNQDLGSVRRLAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANDHPGLTRTSLGHTELVHLSRRPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>LS483424.1|SQH15908.1|835909_837664_+|Gamma-glutamyltranspeptidase-precursor
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIEVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPRREGLALGD

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Crispr_ID: LS483424_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483424_3

978568-978649

Orphan

Consensus_repeat	Method
GGCGCCTGTCCCGGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483424_3

>merge|LS483424|3|978568-978649|CRISPRCasFinder
GGCGCCTGTCCCGGCGGGGACAGACGCCGTCTTGGCAGTGGCGCTCATGGCGCACGACGGGTGCCTGTCCCGGCGGGGACAG

>LS483424|3|3|978568-978649|CRISPRCasFinder
GGCGCCTGTCCCGGCGGGGACAG	ACGCCGTCTTGGCAGTGGCGCTCATGGCGCACGACG
GGTGCCTGTCCCGGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483424.1\|SQH16089.1\|986452_987709_+\|Isocitrate-dehydrogenase-[NADP]	unknown	unknown	gnl\|CDD\|180792
LS483424.1\|SQH16084.1\|982803_983976_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226346
LS483424.1\|SQH16083.1\|982245_982800_+\|N-acyltransferase-YncA	unknown	unknown	gnl\|CDD\|224168
LS483424.1\|SQH16074.1\|971751_972756_+\|Heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
LS483424.1\|SQH16087.1\|985411_985774_+\|Cytochrome-c-554(548)	unknown	unknown	gnl\|CDD\|225418
LS483424.1\|SQH16072.1\|969405_970722_-\|Recombination-protein-N	unknown	unknown	gnl\|CDD\|223571
LS483424.1\|SQH16080.1\|977426_978560_+\|Heat-shock-protein-J	unknown	unknown	gnl\|CDD\|236757
LS483424.1\|SQH16079.1\|975400_977326_+\|Heat-shock-protein-70	unknown	unknown	gnl\|CDD\|234715
LS483424.1\|SQH16086.1\|985045_985399_+\|Cytochrome-c-554(548)	unknown	unknown	gnl\|CDD\|225418
LS483424.1\|SQH16090.1\|987995_988889_+\|lipopolysaccharide-heptosyltransferase-I	unknown	unknown	gnl\|CDD\|340821
LS483424.1\|SQH16076.1\|973983_974226_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483424.1\|SQH16082.1\|981833_982208_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483424.1\|SQH16075.1\|972813_973902_+\|Ferrochelatase	unknown	unknown	gnl\|CDD\|234585
LS483424.1\|SQH16088.1\|985824_986250_-\|Domain-of-uncharacterised-function-(DUF1841)	unknown	unknown	gnl\|CDD\|370177
LS483424.1\|SQH16073.1\|970737_971637_-\|Probable-inorganic-polyphosphate/ATP-NAD-kinase	unknown	unknown	gnl\|CDD\|179379
LS483424.1\|SQH16081.1\|978750_981501_-\|Protease-3-precursor	unknown	unknown	gnl\|CDD\|223685
LS483424.1\|SQH16077.1\|974367_974922_+\|HSP-70-cofactor	unknown	unknown	gnl\|CDD\|237621
LS483424.1\|SQH16071.1\|969061_969409_-\|Recombination-protein-N	unknown	unknown	gnl\|CDD\|223571
LS483424.1\|SQH16085.1\|983997_984885_-\|ATPase-family-associated-with-various-cellular-activities-(AAA)	unknown	unknown	gnl\|CDD\|223786
LS483424.1\|SQH16078.1\|974929_975310_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|239245

Protein	Function_ID	Function_description	E-value
LS483424.1\|SQH16089.1\|986452_987709_+\|Isocitrate-dehydrogenase-[NADP]	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
LS483424.1\|SQH16084.1\|982803_983976_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226346	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown].	0
LS483424.1\|SQH16083.1\|982245_982800_+\|N-acyltransferase-YncA	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	1.00531e-60
LS483424.1\|SQH16074.1\|971751_972756_+\|Heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.1274e-145
LS483424.1\|SQH16087.1\|985411_985774_+\|Cytochrome-c-554(548)	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	2.60442e-23
LS483424.1\|SQH16072.1\|969405_970722_-\|Recombination-protein-N	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.81994e-143
LS483424.1\|SQH16080.1\|977426_978560_+\|Heat-shock-protein-J	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
LS483424.1\|SQH16079.1\|975400_977326_+\|Heat-shock-protein-70	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
LS483424.1\|SQH16086.1\|985045_985399_+\|Cytochrome-c-554(548)	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	6.05638e-23
LS483424.1\|SQH16090.1\|987995_988889_+\|lipopolysaccharide-heptosyltransferase-I	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.77841e-14
LS483424.1\|SQH16075.1\|972813_973902_+\|Ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	7.84073e-159
LS483424.1\|SQH16088.1\|985824_986250_-\|Domain-of-uncharacterised-function-(DUF1841)	gnl\|CDD\|370177	pfam08897, DUF1841, Domain of unknown function (DUF1841). This family of proteins are functionally uncharacterized.	1.92899e-74
LS483424.1\|SQH16073.1\|970737_971637_-\|Probable-inorganic-polyphosphate/ATP-NAD-kinase	gnl\|CDD\|179379	PRK02155, ppnK, NAD kinase.	0
LS483424.1\|SQH16081.1\|978750_981501_-\|Protease-3-precursor	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.06874e-64
LS483424.1\|SQH16077.1\|974367_974922_+\|HSP-70-cofactor	gnl\|CDD\|237621	PRK14139, PRK14139, heat shock protein GrpE; Provisional.	1.18525e-78
LS483424.1\|SQH16071.1\|969061_969409_-\|Recombination-protein-N	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.47175e-51
LS483424.1\|SQH16085.1\|983997_984885_-\|ATPase-family-associated-with-various-cellular-activities-(AAA)	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.85673e-44
LS483424.1\|SQH16078.1\|974929_975310_+\|Uncharacterised-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.07863e-05

>LS483424.1|SQH16080.1|977426_978560_+|Heat-shock-protein-J
MAKRDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYGHAGVDPNAAGMGGGMGGGMGGGFADAFGDIFGEIFGAGRRGGGGPQVYRGADLKYALEITLEQAASGFDTEIRVPSWENCDTCHGSGAKAGTSPKTCRTCGGSGAVRMQQGFFSVQQTCPTCHGTGKEITDPCPSCDGVGRTRRNKTLQVKIPAGIDDGMRIRSSGNGEPGINGGPPGDLYVEIHIKQHKIFQRDGDDLHCELTIPFTTAALGGELQVPTLGGKAEISIPEGTQSGKTFRLRAKGIRGVRGSYPGDLYCHVVVETPVRLSDEQKAILRQFEASLNDGGDRHSPQSKSWTDRVKEFFS
>LS483424.1|SQH16079.1|975400_977326_+|Heat-shock-protein-70
MSKIIGIDLGTTNSCVAVLDGGQVKIIENAEGARTTPSIVAYMDDGETLVGAPAKRQAVTNPKNTLYAVKRLIGRKFDEKAVQKDIDLMPYSIVKADNGDAWVEVHGKKLAPPQVSAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKTEKGDRKIVVYDLGGGTFDVSIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDYIISEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTEINLPYITADASGPKHLNLKITRAKLEALVEELIERTIEPCRVAIKDAGVKVSDIDDVILVGGMTRMPKVQDKVKEFFGREPRKDVNPDEAVAAGAAIQGSVLSGERKDVLLLDVTPLSLGIETLGGVMTKMIQKNTTIPTRYSQTFSTADDNQPAVTIKVFQGEREIAAGNKGLGEFNLEGIPPAPRGLPQIEVTFDIDANGILHVSAKDKGTGKENKITIKANSGLSEDEIQRMVKDAEANAEEDHRLAELAQARNQADALVHATRKSLTEYGEKLEAAEKESIEAAIKDLEDILKTGDKAEIDAKVEALSTASQKLGEKMYADMQAQQQAQQQQAADNAKPVDDNVVDADFKEVKRDQ
>LS483424.1|SQH16078.1|974929_975310_+|Uncharacterised-protein
MAAAPFDPAEVFQVFGMRRVDSASFDEQVVQAPGDDLRCVFLWGQDCYNCGIFKQTALLQRQALLALELSWFEADVYADEALGRRFSLHGVPTFVLYRSGKRLGRVTGWPGLPQFSAAMQRLRDGT
>LS483424.1|SQH16077.1|974367_974922_+|HSP-70-cofactor
MTAPQEPVDSTPESGENAATPGLEDDLSAELAALRAELEAAQATVKAQQEQVLRAAAEAENVRRRAQEDVAKARKFGIESFAESLVPVKDSLEAALAQPDQAAQAWREGVEVTLKQLTAAFERNLLKEIAPAQGDKFDPHLHQAISSVPADQPANTVLQLLQKGYVIADRTLRPALVVVSAGQG
>LS483424.1|SQH16076.1|973983_974226_+|Uncharacterised-protein
MNPPRKPTIGTSGPPGHANLEEDQLERELDEALLETFPASDPIAITSEDERDEPDDKVDEALEDTFPASDPPAPAQPGKK
>LS483424.1|SQH16075.1|972813_973902_+|Ferrochelatase
MFLRLFKYLWPERYLPEIPAQDPFDENPPPCGPGRVGVLLVNLGTPDEPTRGAIRRYLGEFLSDPRVIEIPRYLWMPILHGLVLAMRPKKLAPRYAGIWMEEGSPLLVYSQRQAAGVRQGLAARGVHAEVELAMRYGKPSIPAAITALRERGCDHILAVPLYPQYAASTTATVVDAVTRHAGRLRDQPALRFVKRFHNDPAYVEAQAGRIAEFWQAHGRPQKLVMSFHGLPRYSIELGDPYYRDCLDTARLLRERLGLREDEVEVTFQSRFGSARWLEPYTEPTLAELARQGVTEVDVVCPGFVADCLETLEEISQECRDAFVAAGGRQFRYIPALNDCPPWIEGLTDLVERQLRGWPTGNP
>LS483424.1|SQH16074.1|971751_972756_+|Heat-inducible-transcription-repressor-HrcA
MDDRARALLKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHSPHTSAGRVPTPRGYRMFVDSLLAVRAYQFEPAHIGELLPVSEPSRAVNAAAALLSNLTQFAGVVLTPKRTQIFRQIEFIRLSDKRVLLIIVTPEGDVQNRILSAQRDYTEAELLEAGNFFNVHFSGKSFDAVRRTLSTELAQLRDDISRLMQAAVEAGAEAADDGEAVVISGERKLLDVTDIASDMDRLRKMFSLFEKKTDLLQLLDVSSRAQGVQIYIGGDSQLVPMEEVSVITAPYGVDGKVIGTLGVIGPTRMAYERVIPIVDITARLLSNALSHNQ
>LS483424.1|SQH16073.1|970737_971637_-|Probable-inorganic-polyphosphate/ATP-NAD-kinase
MYFPIVALIGRYQDTGLDAPLTALAQMLTQAGRRVLVEAETARNAGVSGYPVADWDEIGRTATLAVVMGGDGTVLGAARHLAPYGVPLIGINHGRLGFITDIPLQDAHDALGRVLEGNYQAEDRMLLQGGVWRGEQQMYSASAVNDVVLNRAGRGGMIEVRVELDGAFMYTQRADGLIIATPTGSTAYSLSANGPILHPGMNAMVLVPVAPQTLSNRPIVIPDSGVLNMTLTAMGRVEIGASVHFDMQTWSDLQPGDRITVQRAPHTIRFVHPEGYSFFSTLRRKLHWNLMPQATDNLE
>LS483424.1|SQH16072.1|969405_970722_-|Recombination-protein-N
MLRTLHIRDFVIVEQTELHFGDGFTVFSGETGAGKSILIDALALTLGERGDASMLREGAARADITAVFDAPPALRDWLAERELDSGDELALRRVIDSQGRSRAYINGMPATIAQLRELGDGLVDIHGQHAHQSLMRPEAQRDLLDAHGGHAELRQTVAQAWKQWRALARQLDTAEQDAEALAAERDRLQWQSDELDRLGLGPDEWDALQTEHTRLSHAQSLLDGASRILEALDGEHDSAQYRLNGAAHQLQQMLRHDPALQGIGDELESARIAITEAVSDLNNYVSRVELDPQRLADVEARLSAVFETARKFKCEPHGLPALRDSLHGKLAEMQAASDVQALRAQAEAAQARYEAAAARLSAARRKIAKDLGKQVTQAMQTLSMQGGRFEAALTGGAPSAHGSEQVEFLVAGHAGSTPRPLAKVASGANCRVFRWRCR
>LS483424.1|SQH16071.1|969061_969409_-|Recombination-protein-N
MIASRAARVPTLIFDEVDSGVGGAVAEAVGKLLRELGQRHQVLCVTHLPQVAACAHAQYRVSKVESGGSTRSRIAELDAEARVEEVARMLGGIKITATTRDHAREMLGGHTAPAA
>LS483424.1|SQH16081.1|978750_981501_-|Protease-3-precursor
MRLPLLSRRLNALLVSSFLAFQAGAASLPAGVSEVSSIEGITEYRLANGLRVLLAPDASKPTTTVNMTYLVGSRNENYGQTGMAHLLEHMLFKGTPAIRNALGEFSRRGLQANGSTSSDRTNYFASFAANPETLKWYLGWQADAMVNSLIAKEDLDSEMTVVRNEMESGENNPFRVLMQKMQAAAYQWHNYGKSTIGARSDVENVDIAQLRAFYHEYYQPDNAVLIVAGKFDPQTALADIQSSLGKLPKPKRTLPPEYTVEPVQDGERSVTLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSGRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWRLFFLQRDRVRDAKLDDVQRAAVAYLVRSNRTEGRYIPTEKPQRAPLAQRADLAAVFKDYKGDPNFKAVEAFDPSPANIDKRTLRRTLDLPNGQVELALLPKATRGDRVQAELLIQFGDAEALRGQRVPLAAAAALLDRGTDKLSRQAIQDRLDQLQAEAAINGSGTNLVVNISTLGKNLPDVMALVLDVVRNASFPQDQVEEYKRQAITMVQDAMTDPTALASRALARHNNPWPADDVRYVPTFDEALEQLRSLSRDDLAAVSGKLYGAGRIKFSAVGEFDPAAVEAVLRKGLDGWRSAPAYTRLPDPYRAVPAQQFDIATPDKANAFYISRMPLQLQDTNADYPALYLANFLLGTSETSRLWHRVRETEGLSYNVRSNLSVSSYEPSANWTIYAIYAPQNRARLEKAISEELARALKDGFTDQEVRDGVVALLNYRNLARAQDDVLADTWVNYMQTGRSFQWSADMDRKLEALTPDQVNAALRKYLKPDAFSTAVAGDFTKKSAP
>LS483424.1|SQH16082.1|981833_982208_+|Uncharacterised-protein
MLTDIVTRALSQLLGNSLSGDVIKGRFRYAYASDDGRFVAILGHDLTTYVVDVDAQRYFAECAGVPCGFAGHVLEMEGAQEHGHPWPAVNDLFDLDMDGDEIAWRRCPGAVALAATRQAQSRVA
>LS483424.1|SQH16083.1|982245_982800_+|N-acyltransferase-YncA
MNATPSPAPTGATLVDCTHDRHAAAILDIFNDAILTSTALYDYQPRALASMEAWFLAKRQGGFPVVGFEDAAGVLMGFASYGTFRAWPAYKYSVEHSVYVDRRYRGRGLGEALLRALIERARLQQVHVLVGGIDATNAGSVALHRKLGFVHAGTITQAGFKFGRWLDLAFYQLTLDTPLRPVDG
>LS483424.1|SQH16084.1|982803_983976_-|Uncharacterized-protein-conserved-in-bacteria
MLIDFFYHLRAHKLPVSVQEYLTLLEALRQRLMAPTLDDFYFLARTALVKDESLYDRYDAAFGAYYRGIAAALPADRDIPLDWLIKEFEKTLTPEEKAAIEAHGWDKLMELFKQRLEEQQERHAGGSKWIGTGGTSPFGNGGYHPEGIRVGGDSAGNRTAVKVWDMRQFRDYDDQLELGTRNFKVALRRLRRFARQGADLELDLDDTIASTARNAGHLDLRLVPERRNTVKVLMLLDVGGSMDDHIARVEELFSAARSEFRHLDVYYFHNCPYENLWQNNRRRQNERFDTWDVLRKYNADWRLIIVGDATMSPYEILQPGGSVEHYNKEAGAVWLRRLLDAWPKAAWLNPEPTASWRYRQSIALLRDIMQDRMYPVTVAGLEQAMRQLSK
>LS483424.1|SQH16085.1|983997_984885_-|ATPase-family-associated-with-various-cellular-activities-(AAA)
MPTSASSSSAPAQPARFEGTDRYVATDDLKLAVNAALTLQRPLLIKGEPGTGKTILAEEVARALDRPLLQWHIKSTTKAHQGLYEYDAVSRLRDSQLGDEKVRDIRNYIVQGTLWQAFEAPEPVVLLIDEIDKADIEFPNDLLRELDRMEFHVYETRQTVQARHRPLVIITSNNEKDLPDAFLRRCFFHYIRFPDRDTMRDIVGVHYPDIRQDVLRAALDTFFALREAPGLKKKPSTSELLDWLRLLLAEAIPAAEIDAHAATAVPVLAGALLKNEQDVHLLERLGAMARGAQRR
>LS483424.1|SQH16086.1|985045_985399_+|Cytochrome-c-554(548)
MKLRISMTRTVSVLAVLASCAIAGPAAAADAAPVGNAQNARDKVSMCIGCHGIPGYKASFPELYHVPMIAGQNAKYIEAALNEYRKGARSHPTMDAVAGSLSDQDIADLAAYYSSLK
>LS483424.1|SQH16087.1|985411_985774_+|Cytochrome-c-554(548)
MKRFTFALAGIVLATAGVSAQAQDVVAGKAVFDKFNCASCHGADAKTSVQPEYPVLAGQHADYLAHALKAYKRGAAGSAATANVRKNPIMGAFAAQLSDQDIRNVAAWLAAQPSDLGVRQ
>LS483424.1|SQH16088.1|985824_986250_-|Domain-of-uncharacterised-function-(DUF1841)
MFNPSRDQVREFFIETWRKHRATEVLTPLESMALDWILEHPEYHGDLESPEAMTAEYPVEHGRTNPFLHLSMHLAIAEQLSIDHPRDIRAAYQRLVGRGDAHQAAHEIMECLGQVVWEAQRLGTPLDSDAYIELIRQRAER
>LS483424.1|SQH16089.1|986452_987709_+|Isocitrate-dehydrogenase-[NADP]
MSYQHIKVPTGGQKITVNADYSLNVPDQVIIPVIEGDGTGADITPVMIKVVDAAVQKAYAGKRKIHWMEVYAGEKATKVYGPDVWLPEETLDAVKDYVVSIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYFKGVPSPVREPEKTDMVIFRENSEDIYAGIEYMAESEQAKDLIQYLQTKLGATKIRFPNTSSIGIKPVSREGTERLVRKALQYAIDNDRASVTLVHKGNIMKFTEGGFRDWGYALAQNEFGAQPIDGGPWCKFKNPKTGREIIVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADLIIASMEKSILSKKVTYDFARLLEGATQVSCSGFGQVMIDNM
>LS483424.1|SQH16090.1|987995_988889_+|lipopolysaccharide-heptosyltransferase-I
MAPRLGDTLLMMNMARNLAAHGREVSIFGDYIHGLRDWFPGLDIRPSLSEEQAGQVLPGYDCAAQMHVGWPYALHAHQPNYFYYDAHVVITGRGFVKLFQIRDFCREQLGLAQAGADNGLRPPPQVQPHRSHPRRVALHPTSTGAQRCWAPRHFKELGLRLLHEGYEPNYIVAPHERAEWSWVLDHGLHLPQFPSLSEVAGFIHASGWFIGNESGIGHLASNVGVPTLSLTGRPTRTRAWRPAWSTSRIVYPALIPGGRWRDRLWREWLSPRRVMSAFHKLQADDRRQPVGVPWGKI

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Crispr_ID: LS483424_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483424_4

2547133-2547219

Orphan

Consensus_repeat	Method
CTGTCCCCGCGGGGACAGGCACACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483424_4

>merge|LS483424|4|2547133-2547219|CRISPRCasFinder
CTGTCCCCGCGGGGACAGGCACACTGCCGTACGCCATCGACGCTAGCCCGCCAAGACGGTATCTGTCCCTGCGGGGACAGGCACACT

>LS483424|4|4|2547133-2547219|CRISPRCasFinder
CTGTCCCCGCGGGGACAGGCACACT	GCCGTACGCCATCGACGCTAGCCCGCCAAGACGGTAT
CTGTCCCTGCGGGGACAGGCACACT

Protein	Signature genes	Signature genes Name	Protein_function
LS483424.1\|SQH17523.1\|2539738_2541052_-\|Putative-pyrimidine-permease-RutG	unknown	unknown	gnl\|CDD\|132655
LS483424.1\|SQH17535.1\|2555955_2556897_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226706
LS483424.1\|SQH17530.1\|2548227_2549448_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|225995
LS483424.1\|SQH17524.1\|2541185_2542631_+\|Phosphoglycerate-transport-regulatory-protein-pgtC-precursor	unknown	unknown	gnl\|CDD\|270236
LS483424.1\|SQH17519.1\|2534976_2535579_+\|RNA-binding-protein-YhbY	unknown	unknown	gnl\|CDD\|198171
LS483424.1\|SQH17529.1\|2547281_2548046_-\|Uncharacterized-oxidoreductase-SAV2478	unknown	unknown	gnl\|CDD\|235910
LS483424.1\|SQH17522.1\|2538076_2539708_+\|Aspartate-chemoreceptor-protein	unknown	unknown	gnl\|CDD\|185001
LS483424.1\|SQH17526.1\|2544413_2545499_+\|Spermidine/putrescine-import-ATP-binding-protein-PotA	unknown	unknown	gnl\|CDD\|226361
LS483424.1\|SQH17527.1\|2545546_2546446_+\|HTH-type-transcriptional-activator-CmpR	unknown	unknown	gnl\|CDD\|223656
LS483424.1\|SQH17534.1\|2554629_2555910_-\|Lipoprotein-releasing-system-transmembrane-protein-lolE	unknown	unknown	gnl\|CDD\|274034
LS483424.1\|SQH17538.1\|2559815_2560571_+\|Benzil-reductase	unknown	unknown	gnl\|CDD\|180796
LS483424.1\|SQH17536.1\|2556842_2558579_+\|Single-stranded-DNA-specific-exonuclease-recJ	unknown	unknown	gnl\|CDD\|182944
LS483424.1\|SQH17531.1\|2549568_2552799_-\|Extracellular-serine-protease-precursor	unknown	unknown	gnl\|CDD\|377133
LS483424.1\|SQH17528.1\|2546456_2547101_+\|Phosphoglyceromutase	unknown	unknown	gnl\|CDD\|366010
LS483424.1\|SQH17521.1\|2536970_2537447_-\|Transcript-cleavage-factor-greA	unknown	unknown	gnl\|CDD\|234693
LS483424.1\|SQH17520.1\|2535718_2536669_+\|insertion-element-IS2-transposase-InsD	unknown	unknown	gnl\|CDD\|289759
LS483424.1\|SQH17532.1\|2553080_2553908_-\|Uncharacterized-deoxyribonuclease-YjjV	unknown	unknown	gnl\|CDD\|238635
LS483424.1\|SQH17537.1\|2558904_2559786_+\|Peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
LS483424.1\|SQH17525.1\|2542707_2544417_+\|Spermidine/putrescine-transport-system-permease-protein-PotB	unknown	unknown	gnl\|CDD\|224099
LS483424.1\|SQH17533.1\|2553941_2554637_-\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|213222

Protein	Function_ID	Function_description	E-value
LS483424.1\|SQH17523.1\|2539738_2541052_-\|Putative-pyrimidine-permease-RutG	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
LS483424.1\|SQH17535.1\|2555955_2556897_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	1.75258e-20
LS483424.1\|SQH17530.1\|2548227_2549448_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.13968e-78
LS483424.1\|SQH17524.1\|2541185_2542631_+\|Phosphoglycerate-transport-regulatory-protein-pgtC-precursor	gnl\|CDD\|270236	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. On the other hand, thiamin is an essential cofactor in all living systems. Thiamin diphosphate (ThDP)-dependent enzymes play an important role in carbohydrate and branched-chain amino acid metabolism. Most prokaryotes, plants, and fungi can synthesize thiamin, but it is not synthesized in vertebrates. These periplasmic domains have high affinities for their respective substrates and serve as the primary receptor for transport. After binding iron and thiamine with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The iron- and thiamine-binding proteins belong to the PBPI2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.57311e-40
LS483424.1\|SQH17519.1\|2534976_2535579_+\|RNA-binding-protein-YhbY	gnl\|CDD\|198171	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome.	5.40171e-31
LS483424.1\|SQH17529.1\|2547281_2548046_-\|Uncharacterized-oxidoreductase-SAV2478	gnl\|CDD\|235910	PRK07024, PRK07024, SDR family oxidoreductase.	4.78988e-141
LS483424.1\|SQH17522.1\|2538076_2539708_+\|Aspartate-chemoreceptor-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.67757e-117
LS483424.1\|SQH17526.1\|2544413_2545499_+\|Spermidine/putrescine-import-ATP-binding-protein-PotA	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.76041e-148
LS483424.1\|SQH17527.1\|2545546_2546446_+\|HTH-type-transcriptional-activator-CmpR	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.08863e-33
LS483424.1\|SQH17534.1\|2554629_2555910_-\|Lipoprotein-releasing-system-transmembrane-protein-lolE	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	9.67778e-160
LS483424.1\|SQH17538.1\|2559815_2560571_+\|Benzil-reductase	gnl\|CDD\|180796	PRK07023, PRK07023, SDR family oxidoreductase.	5.47641e-103
LS483424.1\|SQH17536.1\|2556842_2558579_+\|Single-stranded-DNA-specific-exonuclease-recJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
LS483424.1\|SQH17531.1\|2549568_2552799_-\|Extracellular-serine-protease-precursor	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	1.2867e-46
LS483424.1\|SQH17528.1\|2546456_2547101_+\|Phosphoglyceromutase	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	5.12316e-70
LS483424.1\|SQH17521.1\|2536970_2537447_-\|Transcript-cleavage-factor-greA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	7.10406e-83
LS483424.1\|SQH17520.1\|2535718_2536669_+\|insertion-element-IS2-transposase-InsD	gnl\|CDD\|289759	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481. This is the upstream region of the conjoined ORF AB of insertion element 481. The significance of IS481 in the detection of Bordetella pertussis is discussed in. The B portion of the ORF AB carries the transposase activity in family rve, pfam00665.	3.75329e-40
LS483424.1\|SQH17532.1\|2553080_2553908_-\|Uncharacterized-deoxyribonuclease-YjjV	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.42767e-89
LS483424.1\|SQH17537.1\|2558904_2559786_+\|Peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
LS483424.1\|SQH17525.1\|2542707_2544417_+\|Spermidine/putrescine-transport-system-permease-protein-PotB	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	3.58657e-90
LS483424.1\|SQH17533.1\|2553941_2554637_-\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.7791e-114

>LS483424.1|SQH17528.1|2546456_2547101_+|Phosphoglyceromutase
MTEIWFIRHGETDWNRQRRLQGWQDIPLNESGREQARLLAERLRDTASEHPFAALYSSDLKRAHDTAASLSAALQLRVRTEPGIRERGFGVLEGLEMENLEQQAPQAAQAWRSRDPLRALEGGETLGQFQARIIATVDDLAARHASERILAVTHGGALDIIWRHASGVPLDAPRYAALLNVSINRVAIAQRKWEVLGWGDVEHIGAETGNDVTP
>LS483424.1|SQH17527.1|2545546_2546446_+|HTH-type-transcriptional-activator-CmpR
MEIYQIRAFVTVARLGNLTKAAEALSLTQPAVTAQLKALEQSLGVALFDRAAGRLSLAKAGEALLPTAEALLVLGAQLKSEARQLQGQLQGVIDLGVPSEQPDFLRLGELAAALRQRLPLVELKTHVLPSTALLEQVGTARLAGALTIVAHPPRGVTWHALRSVRYRIALPASLADTLKRAGWRDIAQLPWLDGPSGSHLHLLLRDMFERHGLAPRVVMQNDDQSNLDALVRAGAGCALLREETALAGAAAGDFIVWGQARADATLGFIAPPEQAGEPMLVALISMIQKIWKPGAAVAT
>LS483424.1|SQH17526.1|2544413_2545499_+|Spermidine/putrescine-import-ATP-binding-protein-PotA
MKKVSVECRNIRLSYGRNEVLKDISIHIEPGEFFALLGPSGSGKSTLLRLIAGFNRQSHGQLLVDGRDIGATPPWDRNIGMVFQNYALWPHMTVWDNVAFGLVERRLPRAEIRDKVAAALELVGLADFGRRRPNQLSGGQQQRVALARTIVIEPQVLLLDEPLSNLDKKLRVQMRQDLLSLQRRLGITTIFVTHDQEEAMTTADRMAVLDHGVVQQIGAPSTLFDYPVNRFVANFVGTMNVLEGEVRERSRGGVVLAVDGVGELHLPVNGDAPQAGRLAASFRPHTVLIEMADGTGDARYVWLPGVVESSEFLGEFTRYQVQVGEQRLTADQHHLAGLSPFPVGAPVAVGLEPTQIRLLAA
>LS483424.1|SQH17525.1|2542707_2544417_+|Spermidine/putrescine-transport-system-permease-protein-PotB
MTSTGTFRLPAGPALAALLVLAFLALFLVFPVGTVFYTAFVNADGSFTLGHFGAVFNQPLMKEAFFNSLYVAGWSSLLASLIAVPLAYFTVRFEFRGALLIQTLGVLPLIMPPFVGAMAMQLIFGRSGSVNLLLDDWLGITLPFMDGLNGVIFVESLHYFPFILMNLVVALRNIDGSMEEAAFNLGSRGFRLFCRIIFPLALPGYLAGTSLVFVKVFDDLGTPLVLGTTNMLAPQAYLRITQVGLEDPLGYVISVIMIGFSILALWLSARVLKGKDYSTLQKGGNAIHKRRLRPVESVLAYAWIGAVLLLVLSPHLGVLLLSLASVWSYAPLPDGYTLAHYTAVFTESQGMIANTLLYCGLAAGVDVVLGTAIAYLMLRTRLPARQWLDFIASAALAIPGIVLAIGYLRTFRGVEIPGTGVLLTSSWVLIMIAYSVRRLPYALRSCVAALQQINVSLEEAAESLGASRLRTIRRIVVPLMAGGMLAGFVTSFITAAVELSATIMLVTRDSQAPMSYGIYLYMQSAAGRGPGAALGVLAVVAVGIGTYVSHLLVERASARQRPARSGESS
>LS483424.1|SQH17524.1|2541185_2542631_+|Phosphoglycerate-transport-regulatory-protein-pgtC-precursor
MTVSSVSSRISAGAFDQYARQLRDRAAASGAKDEAGSPAAEALQALQRQLAAIMAACAPALAGTVTVITSFPKDLTQAYKAAFEKAHPDIKLEILNKNTVSGIAFVRATPAGQRPEVFWASAPDAFEVLGRDKLLAKAPDVANPAVPDKIGSYPINDPSGMYMGQALAGYGIIYNTRYIKANKLPAPVEWKDLLAPHWFGHVGITAPSRSGTMHLTVETILQGEGWNDGWGTLLRMSGNASAVTERSFGVPDGVNNGQFGAGPVIDFFGLSSKYSKFPVDFVYPSETAIVPANIALIEGAKNTEEGKKFIAFTLSQAGQELLLEPKISRLPVLPYAALAGKIPPGYPDPAEIAKRSKVHFDADLSQARYYVVQSLFDQTITFRLKELQAATKAIYDAEAKLGERAGQGKAAELLAQARQLAWTPLVDAQRAADPAFLKLFAGNKKDAAVNQQITQLEGEWNGKARANYEQAQKLAREAAAL
>LS483424.1|SQH17523.1|2539738_2541052_-|Putative-pyrimidine-permease-RutG
MSNTYFPRWRLADDTVPGAVIAPDERLSWPKNIAMGAQHVVAMFGSTVLAPLLMGFDPNVAILMSGIGTLIFFLFVGGRVPSYLGSSFAFIGGVVAVTGYVAPGANANIGVALGAIIACGLVYALIGLVVWAASARGNGARWIEAMMPPVVTGAVVAVIGLNLAPIAAKGAMGSSGFEASMALMTILCVGGIAVYTRGMVQRLLILVGLVLACVIYAVCANGLGLGAPMDFAKVAAAPWFGLPSFAAPVFEPQAMGLIVPVAIILVAENLGHVKAVAAMTGQDLDRCVGRAFVGDGVATMVSGAVGGTGVTTYAENIGVMAVTRIYSTLVFVVAAVIALVLGFSPKFGALIQTIPGPVLGGMSVVVFGLIAIAGARIWVVNQVDFSDNRNLIVAAVTLVLGAGDFSVKLGDFSMNGIGTATFGAIILYALLGLARRR
>LS483424.1|SQH17522.1|2538076_2539708_+|Aspartate-chemoreceptor-protein
MLERIKVRTAMVAVFACFLAVLMLSGALTWRNAGRSAAEIEGLNQVAVNQVDPLFEASGAALRARVALLEALANLQANHLDPVATLHQQAGAAQRQAATQFQRYVDVPKEPAAAELAATLQTRWRAYQSVLDELAAAVDAGQAEPALAAMNRAQQAEHAFQRDMEAFLARVQAHSDEVRSGAEDTHVVARWSAIALAALGVLLTLAGWLFVRRAVLRPLLEAGHHFDRIADGDLTARIEVRSANEIGALFAALKRMQEGLTRTIAVMRRGVDEINVGAAEISAGNANLSSRTEEQAAALEETAATMEELATTVKQNADNAAQANQLAAVSMQVAQRGGESVAQVVQTMHGISASSRQIADIVTVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRAAQAAKEIKALIESSVATVRAGSQQVASAGGTMDEVVASVQRVADIMGEISAASAQQASGIDQVSLAISQMDETTQQNTALVEQAAAAATAMEEQARHLAAAAAVFRTQGGAIIDVAAAPLAGPAGGHAALPPAAAR
>LS483424.1|SQH17521.1|2536970_2537447_-|Transcript-cleavage-factor-greA
MSAIPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEGRISELEGTLSNAHLIDPTALDAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLISVSSPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL
>LS483424.1|SQH17520.1|2535718_2536669_+|insertion-element-IS2-transposase-InsD
MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVARYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNRGIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSGYVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDT
>LS483424.1|SQH17519.1|2534976_2535579_+|RNA-binding-protein-YhbY
MPISELTSRERSDLRSAAHPLRPVVLIGDNGLTDAVLKEIDLALTAHELIKVRAGGDDREAREAMLATICDTLSCAAVHHLGKTLILFRPDLRAAAAKAAADTPAKRRPSEPHTPKKMAAEGKRLTKTRPARKAAEAAAPAAGARPGRDDLNQAGRPARPSTRKASPGHAIPRRSGSALSLRAGARGGLAGRKPARANKQ
>LS483424.1|SQH17529.1|2547281_2548046_-|Uncharacterized-oxidoreductase-SAV2478
MQHVFITGASSGLGQALARRYAADGARLGLLGRRAQALEALASSLPGQHRCYAVDVRDRAALHAAAQDFIAHCGGRVDVVIASAGVSAGTLTEAGEDYAVFKEIVDTNLLATVATFEPFIAGMRAARAGRLVGIASVAGVRGLPGAGAYSASKAAVATYCESLRLELAQAGVRVVTIAPGYVKTAMTAHNPYAMPFLMEADAFAGRAHAAIARGVSYRVIPWQMGVVAKLMRLLPDAVYDRLARDAPRKPRRGQ
>LS483424.1|SQH17530.1|2548227_2549448_+|Transposase-and-inactivated-derivatives
MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCEQCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVTDRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFALHKGHRYATVVVDPISRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYELEIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNRDNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYKQAEQSGIAALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFSLKIRAAFPGNAR
>LS483424.1|SQH17531.1|2549568_2552799_-|Extracellular-serine-protease-precursor
MAQASARGMGLRITSLAAALLGVYGAAGAAENRLECIGACPPGQPVAGAHYSGTNLSANREWVVYGEGSNAVFTLQGGSVTASGGLMGAVNAADGARVYLNQVSVRTDAGNGWEAPGVRAEYGALVNVRGGSIATVGGGSYGVQSLDSGTMIELNGTDIRTTDAYSDGLRAEFGGSIRAVGLTINTTGEHAVGAMGADDGTIALRDSRITTSGVDAYGLGTESQVLSPGGVLQVSNTAIQTSGKNAHGVYLQGGSSLNMSGGSIRTTGSGAAGLRVSNGSSVALNGVEVVASGPSLLSTLSATRQQSIVVGAGSNLTRNDGRLLLVRRVAGGELGQVTLTLKSGSYAAGNIENLAADGSRESSALTIVDVQSGAQWAGLVIDDTTAIVNGSQSGQHSGFSTAGDMVLEGGSAPVTFTGVSNIGGSSSLGAGSQTTFGGATTIGQSLAVLPGGSVAFNGPLTIGESVTGGQGTALSFNAPAIIGANVQGAGGAAFTFSGPAQVGGSVQGLDGASFRFSTSAPTAIAGGLSLAGGSSLGGGSPTTPIVVTGGADAVSGAILGGNLDIGGALRMTGASLAPGNSIGTVTVGSVGALSGSTYLAEVNAKGQSDLLVVRSGNVDLAGVSLVVGQENGTGGYVLNHDYTIIKTEAGKIVGEFAAASLDESLASTLVKLDPVKYGAQATQVSLSPDADKLAAARAGLTRNQSAVLDGALSVAGRNASADAVMLMSDTGQRAGALDQLSGEVHGSAVSALYSNTQLLNRTVARRMSANLGAGLLAGAPTAQAAGPAAASAMPGTAAYPLWADVVGNWSSFDAKDNAAKAKSNTAGLFIGGDVAVGAGWRVGGALGFTDGRIKADAVDSRSDVTSYTAALYGGNSWAAGKGKLNFLAGVGYTHHDIDSRRSVDVGGAQTLKADYKANTTQLFAELGYQVPVGASSSVEPYAGLAWFNNHSDSFDEDGGPAALHGSGQTDQITTFTLGLRGNTALQLGATETRLSAGLGWRHANGDVDATRKLAFIQGGGTAFTVAGSPVARDAAVLDLAAEVDVGRNAALGLAYGGQFGNGNKENTGSLYLKVRF
>LS483424.1|SQH17532.1|2553080_2553908_-|Uncharacterized-deoxyribonuclease-YjjV
MLIDTHCHLDAAEFDADRMAVARAAREAGVQAIVIPAVERANFATVRQLAHAVDSGAYALGIHPLYVARARDEDLDSLRRAIESALPDPRFVAIGEIGLDFFVAEIASGAPRERQERFYAAQLDLAAEYGLPVLLHVRRSQDILLKHLRRRPGVPGGIAHAFNGSAQQAGAFVEQGFALGLGGAMTYPRALQIRRHAADIGLDHLVLETDAPDIPPAWLYEPERRNTPGQLPRIAAELAALRGQAVADVARATTTTALRVLPRLGALLQDRAATP
>LS483424.1|SQH17533.1|2553941_2554637_-|Lipoprotein-releasing-system-ATP-binding-protein-LolD
MTEPNDTGPALQAEHLGKVYDEGPARIEVLSDVSLSVARGEMVAIVGASGSGKSTLLHILGLLDVPSSGTVSVDGVPAAGLSEKRKSALRNRSLGFVYQFHHLLPEFSALDNVAMPLIVRRENRDRARAQAREVLELVGLAAREEHFPGQLSGGERQRVALARALVTRPACVLADEPTGNLDRHTAHNMFELLTRVNRESGTAFVIVTHDPELAARADRQLHMENGRLQPD
>LS483424.1|SQH17534.1|2554629_2555910_-|Lipoprotein-releasing-system-transmembrane-protein-lolE
MLKIPYELWIGARYAGMARIRQRRGRRDRFISFIAATSMAGIALGVAALIVVLSVMNGFQKEVRDRMLSVLPHIELYIPGAAPERVLQQWRQFAQAARANPEVKGEAPFVAAQGMLVRGQALRGVQVRGIDPATEGNVSNIPRQMVSGKLSDLVAGGFGAVLGSDLADGLGVKTGDTVLMLAPQGSISPAGFAPRMRQFTVVGIFSSGHYEYDSTLVFIDDEDAAKVFRESGTAGVRLRVADMQRAPEVAAELTKVLPPYVMAADWSRNNRTWFAAVQTEKRMMFLILALIVAVAAFNLLSSLVMAVKDKQSDIAILRTLGAGPGEVARIFLVQGALIGVVGTLLGVAGGIAIAYNVDVIVPFIERLLGVQFLPREVYFISALPSDPQADDIITIGLTSLVLSLLATLYPSWRASRLQPAQVLRHD
>LS483424.1|SQH17535.1|2555955_2556897_+|Uncharacterized-protein-conserved-in-bacteria
MLIVIPGALPAAAVAPELARLLPQHAPTLHGWLQAASARVQAFDAARQGCTPFEGWQLEQAGYQPQPGLPLGAGLGPLRAAGGTPGQPVWLADLAHLMLGADQAALLDPALLDLRADESAQLFEAAAPLFADSGFGATPIDAARWRLTLPAGMAPQTASPAAVAGQRLRAWWTQDVAMRPWRRLLNEIQMVWYEHPVNEARAARGAAPINALWLYGGATPWPAGAPAPARVCDELAAAQRAGDWAAWLDALAVLDAAQLAPLAGPHGRPVQPLQLLLLGDDRRAALTLKPRAGLARWLPAPKHNWNAWWSRPV
>LS483424.1|SQH17536.1|2556842_2558579_+|Single-stranded-DNA-specific-exonuclease-recJ
MAARAQAQLERLVVSPRLIIRTADLQACQHLEAAGIHPLLSRLWAARGVIHPEQTRMAWPALLPPDRLTHSAHAAAVLADAIEQGKRLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQRMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQALEMARELDNINRERRTIEAEMRDQALAAMEAPDAAAGATVCVFDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAGLTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQQVWGAGFAAPLFLDEFTVRSQRLVGGKHLKLALERGHQRFDAIWFGHDQSLPERIQAAYRLEQNIWNGMVSVQLVIEHAA
>LS483424.1|SQH17537.1|2558904_2559786_+|Peptide-chain-release-factor-2
MGSGLADSCELVELALADSDDATLEAIEHDVDRFQEKLETLEFRRMFANPADPLNCFVDIQAGAGGTEAQDWASMLLRQYLKYAERKGFKAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRIDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMTEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQGV
>LS483424.1|SQH17538.1|2559815_2560571_+|Benzil-reductase
MTDTVAILTGASRGLGAALARGLLAPGTRLITLARRADPDLEAAARTRGASLEQVQVDLSDPAAAGAAAKRLCAALPRDARRYLLINNAGTVSPVAQAAGLTDGAAIAGALNLNVTAVVLLTARFVAALQGLPADRRVLNISSGAGRNPNAGWGVYCAAKAALDMYSRVLKQEQGQDGVRVVALAPGIVDTDMQGAIRASDPADFPALERFREFHATGKLSAPADVAARILAYLDRDDFGTTEIDDIRNYQ

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Crispr_ID: LS483424_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483424_5

2848374-2848447

Orphan

Consensus_repeat	Method
GGCGCCTGTCCCGGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483424_5

>merge|LS483424|5|2848374-2848447|CRISPRCasFinder
GGCGCCTGTCCCGGCGGGGACAGATACCGTCTTGGCAGGCCAGCGGGACGGGGTGCCTGTCCCGGCGGGGACAG

>LS483424|5|5|2848374-2848447|CRISPRCasFinder
GGCGCCTGTCCCGGCGGGGACAG	ATACCGTCTTGGCAGGCCAGCGGGACGG
GGTGCCTGTCCCGGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483424.1\|SQH17814.1\|2846403_2846763_+\|holin-like-protein	unknown	unknown	gnl\|CDD\|377131
LS483424.1\|SQH17819.1\|2851064_2852312_-\|Fosmidomycin-resistance-protein	unknown	unknown	gnl\|CDD\|340883
LS483424.1\|SQH17812.1\|2844329_2844983_+\|pimelyl-[acyl-carrier-protein]-methyl-ester-esterase	unknown	unknown	gnl\|CDD\|273783
LS483424.1\|SQH17820.1\|2852481_2853054_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
LS483424.1\|SQH17811.1\|2843139_2844333_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|273303
LS483424.1\|SQH17816.1\|2847509_2848220_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483424.1\|SQH17809.1\|2840953_2841697_-\|Probable-copper-importing-P-type-ATPase-A	unknown	unknown	gnl\|CDD\|319774
LS483424.1\|SQH17825.1\|2857274_2858696_-\|Outer-membrane-protein-oprM-precursor	unknown	unknown	gnl\|CDD\|182103
LS483424.1\|SQH17810.1\|2841761_2843036_-\|Adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	unknown	unknown	gnl\|CDD\|235656
LS483424.1\|SQH17824.1\|2856531_2857278_-\|Pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|235380
LS483424.1\|SQH17817.1\|2848595_2849918_-\|Isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
LS483424.1\|SQH17826.1\|2858692_2860117_-\|Probable-efflux-pump-membrane-transporter-TtgB	unknown	unknown	gnl\|CDD\|273335
LS483424.1\|SQH17823.1\|2855985_2856447_-\|Holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|234610
LS483424.1\|SQH17822.1\|2854885_2855947_-\|Beta-hexosaminidase	unknown	unknown	gnl\|CDD\|235417
LS483424.1\|SQH17821.1\|2853093_2854923_-\|Excinuclease-ABC-subunit-C	unknown	unknown	gnl\|CDD\|234792
LS483424.1\|SQH17815.1\|2846755_2847499_+\|Inner-membrane-protein-yohK	unknown	unknown	gnl\|CDD\|377236
LS483424.1\|SQH17813.1\|2844979_2846416_+\|Malonyl-CoA-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|379223
LS483424.1\|SQH17808.1\|2840722_2840923_-\|Copper-exporting-P-type-ATPase-A	unknown	unknown	gnl\|CDD\|225127
LS483424.1\|SQH17807.1\|2840582_2840726_-\|Uncharacterized-protein,-possibly-involved-in-nitrogen-fixation	unknown	unknown	gnl\|CDD\|377073
LS483424.1\|SQH17818.1\|2850236_2851058_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase	unknown	unknown	gnl\|CDD\|236986

Protein	Function_ID	Function_description	E-value
LS483424.1\|SQH17814.1\|2846403_2846763_+\|holin-like-protein	gnl\|CDD\|377131	pfam03788, LrgA, LrgA family. This family is uncharacterized. It contains the protein LrgA that has been hypothesized to export murein hydrolases.	2.10855e-25
LS483424.1\|SQH17819.1\|2851064_2852312_-\|Fosmidomycin-resistance-protein	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.90543e-25
LS483424.1\|SQH17812.1\|2844329_2844983_+\|pimelyl-[acyl-carrier-protein]-methyl-ester-esterase	gnl\|CDD\|273783	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam00561). Members of this family are restricted to the Proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	4.76982e-07
LS483424.1\|SQH17820.1\|2852481_2853054_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	3.46977e-48
LS483424.1\|SQH17811.1\|2843139_2844333_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|273303	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase. 7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	6.06104e-142
LS483424.1\|SQH17809.1\|2840953_2841697_-\|Probable-copper-importing-P-type-ATPase-A	gnl\|CDD\|319774	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase. Heavy metal-transporting ATPases (Type IB ATPases) transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. These ATPases include mammalian copper-transporting ATPases, ATP7A and ATP7B, Bacillus subtilis CadA which transports cadmium, zinc and cobalt out of the cell, Bacillus subtilis ZosA/PfeT which transports copper, and perhaps also zinc and ferrous iron, Archaeoglobus fulgidus CopA and CopB, Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase, and Escherichia coli ZntA which is selective for Pb(2+), Zn(2+), and Cd(2+). The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This family belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	3.24681e-21
LS483424.1\|SQH17825.1\|2857274_2858696_-\|Outer-membrane-protein-oprM-precursor	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	6.39103e-107
LS483424.1\|SQH17810.1\|2841761_2843036_-\|Adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	gnl\|CDD\|235656	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional.	0
LS483424.1\|SQH17824.1\|2856531_2857278_-\|Pyridoxine-5'-phosphate-synthase	gnl\|CDD\|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	5.79242e-145
LS483424.1\|SQH17817.1\|2848595_2849918_-\|Isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
LS483424.1\|SQH17826.1\|2858692_2860117_-\|Probable-efflux-pump-membrane-transporter-TtgB	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
LS483424.1\|SQH17823.1\|2855985_2856447_-\|Holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	1.59551e-52
LS483424.1\|SQH17822.1\|2854885_2855947_-\|Beta-hexosaminidase	gnl\|CDD\|235417	PRK05337, PRK05337, beta-hexosaminidase; Provisional.	0
LS483424.1\|SQH17821.1\|2853093_2854923_-\|Excinuclease-ABC-subunit-C	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
LS483424.1\|SQH17815.1\|2846755_2847499_+\|Inner-membrane-protein-yohK	gnl\|CDD\|377236	pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance.	3.62626e-69
LS483424.1\|SQH17813.1\|2844979_2846416_+\|Malonyl-CoA-O-methyltransferase-BioC	gnl\|CDD\|379223	pfam13500, AAA_26, AAA domain. This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif.	8.71449e-67
LS483424.1\|SQH17808.1\|2840722_2840923_-\|Copper-exporting-P-type-ATPase-A	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	2.68159e-11
LS483424.1\|SQH17807.1\|2840582_2840726_-\|Uncharacterized-protein,-possibly-involved-in-nitrogen-fixation	gnl\|CDD\|377073	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type.	1.64467e-12
LS483424.1\|SQH17818.1\|2850236_2851058_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	0

>LS483424.1|SQH17816.1|2847509_2848220_-|Uncharacterised-protein
MALVLARFGFGFCMLLAALVLLAAATLLATRLVGWAVRAFALERSQALASGVAIFILVALALWGCHAVGEVLYGAIGATALVGGAPHWLAGNSHVSAAALMGATTAAAMLAGGPAFWRWLRARRAAAAEQPAPRKAAPPKGAKPAARAAKAAAKTQIAPRGQRIPWLGWTAFFLLFIGAAVLAFAYIVAPIEAGASGLRLEHATRARPVYLAGLTLLGGGAFFLLAWLSRRRLPGD
>LS483424.1|SQH17815.1|2846755_2847499_+|Inner-membrane-protein-yohK
MPDFVNLWIYLSSTPLFGLTATLTVYLSAHAMYLRLGQVPLANPVLWSMVVLAAGLLAFGVPYPTYFAGAQFIHFLLGPAVVALAWPLWMRRAELRRRWARLLWAALFGGAVACASAVLLGWAVGLPRDIILSLAPKSVTAPVAMGLSETLGGIPALSAVFAALTGLVGALTGKYLFDLLGAVRGRQDWADRGFALGTVSHGIGAARAIQVNADAGAYAGLALGLQVILASLLIPVAFRLAAGLGGS
>LS483424.1|SQH17814.1|2846403_2846763_+|holin-like-protein
MQALTGFTWLLALQALGEACSRLLHFPIPGPVTGMLLLLVALRWPLVREPVALAAQFLLSHLSLLFVPVGVGVMTHIALLAEYGLRMAAVIALSTLAGMAATYWALRVGRSAAPETDDA
>LS483424.1|SQH17813.1|2844979_2846416_+|Malonyl-CoA-O-methyltransferase-BioC
MSTRSTPTIGQRFDRAAARYETHAEVQRHAAEQLAERIAALPLPAEPRILEIGCGTGLLTRALARRLGRADWTITDIAPAMLAAQQAGPPPAGRVRHQLVDGEHPAGLPGGYDLICSSLAVQWFGDLDAGLARLAGLLAPGGLLAIATLAEHTFSEWRAAHQAHGLHAATPAYPPAERIGRTLAGLRGGITREAYRQRHPDALHFVRSLKAIGASAPAAGHAPLSPAAFRRVLAQFDRQGNHVTYDLAYGLWRKQAPGVFVTGTDTGVGKTLVSAILARAWRAHYWKPLQTGVAEEPGDTETVAALAGLEPARLHPPAHVLQAPLSPWAAAPLEGVTLDAAAIAPPQVDGPLVVEGAGGLYVPIDERHMMIDLIARLGMPVVLAARSGLGTINHTLLSLHALRERRLPVLGVIMLGEPSAGNRHAIEHFGGVPVLAQIPRLARVDAEAVEAWAARIPPLADCLARRWPDTQETPACRP
>LS483424.1|SQH17812.1|2844329_2844983_+|pimelyl-[acyl-carrier-protein]-methyl-ester-esterase
MSAPRPLLRFEHGWAHDAGVWAPLRAALADWPQQAADAGYFGPAVEPPPDGAPVVAIGHSLGFLKILQSPAPGCIAYIAINGFARFAGGADYPPGVAPRLLERMLARLELDPAAVVDDFRRRAGSAPHAGTPRPEPLRHDLRRLREADERQALAASRLPLLALAGTADPIVAPALTRAQFGACAGLRWRDGGGHLLPTSDPDWCAGRIRAFLAGLPA
>LS483424.1|SQH17811.1|2843139_2844333_+|8-amino-7-oxononanoate-synthase
MSKLDSLFTAALEQAAQRQVRRRLRRATAAPPGRLALDGRTLVNFSSNDYLGLARHPLLAERASLWATRHGAGAQASRLVCGNLDLHEQVEAKLARLKGTEAALLLASGWQANAAVLPALFKAAAAQGEPQVYTDRLNHASLHHGCQAAGVRQIRFRHNDLAHLEHLLAERAGAPGARFIVTESVFSMDGDRADVPALAALAARHHTFLYLDEAHATGVLGPRGMGLAGLAPGGVDLAMGTFSKGLGSFGAYVAGSRALCDYLVNACSGFIYTTALPPAVLGAIDAALDLVPRLDQARAALLGHGERLRASLAAQGIDCGASSTQIVPAIVGDAGHALALAAELERRGLLAVAIRPPTVPAGTSRLRIALSAAHGETELDQLIEALAAGWRAVRQAA
>LS483424.1|SQH17810.1|2841761_2843036_-|Adenosylmethionine-8-amino-7-oxononanoate-aminotransferase
MSDTTPAWMAQGYPHIWLPYAQMKTAAPPLPVVRSHGSLLELADGRTLIDGVASWWTACHGYNHPHIAQAVREQLDRMPHVMFGGLAHEPALNLASRLSALLGPGLERVFYTDSGSVAVEVAMKMAVQFWLNQGERGRTRFVAFRGGYHGDTFGTMAVCDPDEGMHAMFRGLLPEHDVLALPRDEAALAALQAHLERHAGRIAGMLVEPLVQGAGGMLLHDPQVLARLRELADRYGILLIFDEIFTGFGRTGTMFAFEQAGVRPDIITLSKALTGGTLPLAATVASARVFEGFWSDDPGHALMHGPTFMGCALACAAANASLDLFEREPRLRQVAALEQALRAGLEPCRDLPWVRDVRVLGAIGVIELDGIGARDDLRRRLVDAGVWVRPFGNIVYLTPAFTIAEDELQALLAAVRQVVAERRP
>LS483424.1|SQH17809.1|2840953_2841697_-|Probable-copper-importing-P-type-ATPase-A
MRPTSILAVPADLPGADRQARRHALVRLGVAWLAMMQVMMFAWPGYVRNDGIPADALATLDWAIVLMNWAALLMTVPVVLYCAWPIWRGAASGLRRGRAGMDAPVALGIVAAFVPSVHATWTGRGEVYFDSVTMFVAFLLTARYLELCARQACGASALATPLVRRLHQAGGELGAAADRLATRFVFVQVALALAAGAAWTQIDAAHAVPVMVALLVMSCPCAMSMAVPSAMACAHSALLARPEATAA
>LS483424.1|SQH17808.1|2840722_2840923_-|Copper-exporting-P-type-ATPase-A
MARQNLYGSLAWHLLMTPLALAGWVAPWLAAITMLLSSLAVVGNAWRLRRHRWDAAPAAAVAQPAP
>LS483424.1|SQH17807.1|2840582_2840726_-|Uncharacterized-protein,-possibly-involved-in-nitrogen-fixation
MSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDNDN
>LS483424.1|SQH17817.1|2848595_2849918_-|Isocitrate-lyase
MSNRETEIRNLQKDWAENTRWQGIKRAYSAEDVIRLRGSVAVEHSLARRGATRLWDSLHSEPFVNSLGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPQVVRRINNALARCDQIQWMEGKNPGDQDYIDYYAPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVSKLVSARLAADVMGTPTILLARTDADAADLVTSDVDENDRPFITGERTVEGFFRTRAGLDQAISRGLAYAPYADLIWCETSTPNLEYARKFAEAVHRQFPGKLLAYNCSPSFNWKKNLDDGTIAKFQRELGAMGYKFQFITLAGFHALNYGMFELAHGYARRQMSAFVELQQKEFAAAELGFTAVKHQREVGTGYFDAVTQTIEGGQSSTTALTGSTEEAQFEHGGQAVKAA
>LS483424.1|SQH17818.1|2850236_2851058_+|NADPH-dependent-7-cyano-7-deazaguanine-reductase
MSLSNAPLGQHVAYPSQYDPGLLFPIPRATNRASLQLGATLPFTGVDLWNAYELSWLDARGKPRVAMATFSFPADSPNIVESKSFKLYLNSFNQTRLPNAQALRDRLERDLAAAAGAPVGLKFISPQRFGELNMAELDGIYIDKLDIEIDTYEPAPQLLQCAPGDEVEETLATRLLKSNCPVTGQPDWASLQVRYRGRPIDRAALLKYVVSFRQHAEFHEHCVERIFGDIMRACQPRQLTVYARYTRRGGLDINPWRSNFESAPPADVRTARQ
>LS483424.1|SQH17819.1|2851064_2852312_-|Fosmidomycin-resistance-protein
MNSETAVLDSPALRRRDWQIILLIGVAHSSSHFFQLVLPSLYVSLGTEFGLDFARLGLLVSVFYVVSGLGQASSGFVVDRIGARPVLWFGLACFVLSAVLIGAVSGYAMLMLAAAIGGIGNSVFHPADYSIINHRVSPPRLGHAFSLHGLTGNLGWALTPVFITTITLLASWRVAAFSAAALVAVVLLMTVIGRDLLGGAAPAEAGGKSAARPAAQESVWQTLAALLARPALWGAFLFFACTSIALSSVQNYTIPLLGQLYDLSKVAASSALSGYMVASALGMAAGGFLVSANPRTELTVTAALIMAGLTLVVLAMGWVPAGWAALVVGLAGFCSGVAAPSRDMLIRRVTPKGATGSVYGLVYSGMDVGSALGPLGFGLLLDAGMAHGPWVGAGVAFAAAALLAQWIAMQARRTA
>LS483424.1|SQH17820.1|2852481_2853054_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MPINVPIFLTWLRIAMIPLVVGLFYLPESWMSVPMRDTFAAWAFIIAALTDWFDGWLARRWNQTSAFGAFLDPVADKLMVCAALIVLLDLSRVDAFISLIIIGREITISALREWMAKIGASASVAVHRLGKFKTAAQMVAIPCLLYDQPLFGLSSRLIGDVLIVVAAVLTVWSMLYYLQRAWPAIREKSQ
>LS483424.1|SQH17821.1|2853093_2854923_-|Excinuclease-ABC-subunit-C
MPDDFNLKSFLADLPHLPGVYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTRSEAEALLLENNLIKSLRPRYNILFRDDKSYPYLLITGHAWPRIAYYRGATSKRGQYFGPYPNSWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAGDYAHDVQRAVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDDTDVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPPVLVCSHALPDSGLVGLLAEQGGTRAARVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAGRTLALAEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRRYNIVGITPGDDYAAMRQVLTRRFGKVADGEAPMPGLVLIDGGKGQVEVARQVFVELGLDIQSLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEAHRFAITGMRARRAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEGISQELAVRIYDALHG
>LS483424.1|SQH17822.1|2854885_2855947_-|Beta-hexosaminidase
MSSKKKTKPVLPPGPVMVDVAGTTLTKDEKRRLRNPLVGGVILFARNFTDRRQLCALTRAIHKARKEPLLIAVDHEGGRVQRFRDDGFTALPPMQELGKLWDRDPLAAMRLATEAGYVLAAELRACGVDLSFTPVLDLDYGVSKVIGNRAFHHDARVVTMLSRALAQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLARILKDDAAPYAWLGDLVMPAVMPAHVIYPKVDAQPAGFSRRWVSEILRERLGYDGVVFSDDLTMEGASVAGDILARAEAALGAGCDMVLVCNRPDLADELLDRLQVQHPAASVERIRRLMPRFAAPDWDTLQNDSRYQHARRLQSQIVSG
>LS483424.1|SQH17823.1|2855985_2856447_-|Holo-[acyl-carrier-protein]-synthase
MSSVSAAGATPPASPGCIAGIGMDLLRIERIERALARHGDRFAQKILGPEELAKFHARRRRDPARGVRFLATRFAAKEAFSKAIGLGMRMPMSWRRVQTLNAPGGRPVLVIGAELADWFDARFGAAHVSITDESDMAAAYVIVERKPAPDGRP
>LS483424.1|SQH17824.1|2856531_2857278_-|Pyridoxine-5'-phosphate-synthase
MIELGVNIDHVATLRQQRHTAYPDPVQAALRAEDAGADLITLHLREDRRHIQDADVYAIRPLLRTRMNLECAVTPEMLEIACAVKPSDVCLVPEKRTELTTEGGLDVAGAQAAVTDAVQLLAEAGIRVSLFIDPDARQIEAAARAGAPVIELHTGAYAEARDDAAVQAELARVRAAVAEGLRHGLRVNAGHGLHYGNVQAVAALDGIAELNIGHAIVAQSIFDGWDKAVRDMKALMVQARLAAVRGHA
>LS483424.1|SQH17825.1|2857274_2858696_-|Outer-membrane-protein-oprM-precursor
MMAVMYKRSALSVLVAAALAGCSLAPDYKRPEAPVQANWPDQPKVQYGAYASPTSLGEQPAAAVAPQGATPADEIGWREFFRDARLQKLIELALVNNRDLRVAVQRVEEARAQYGVQRGAQWPSIGAGIQGQRQHLPPDMRPLGPDSTSISSQYQAGLGLTTFEIDLFGRLRNLSEAAYQQYLSTEQAQRSVHITLVGAVAQSYFNLRAAEVQLELTQKTLASRQESYNLVKTRFDGGVASELDLNQSKSLLDSASADLAALARARAQAANALVVPAGLPSDLLTRRPDILAAENQLKAANANIGAARAAFFPTISLTGLLGVASPSLDNLFKGGQGYWSFSPSITTPLFAGGSIREGLNLAKARDNIAVAQYEQSIQQAFREVSDALAGEATYSAQLDAQRALQVAAGRTLELSNLRYNNGIDSYLQVQTAQVDFFNAQLGLVQTGLAALINRVELYKALGGGWQESTTKQP
>LS483424.1|SQH17826.1|2858692_2860117_-|Probable-efflux-pump-membrane-transporter-TtgB
MENVITVQGYSFNGNGLNAAIAFTTLKDFSERKSRADSAGAIAFTAFSKQLMGIHDAQVFTLVPPAISSLGNASGFDFRLQDRGGAGTEALGAATAELMGMAAKSPVLSQVRITGLGPGSQLSLTIDRDKAAALGVNFDEAATLISTAVGSAFLNKFPNMGRMQNIWVQADQQYRMQVEDLLKLNARNNQGGMVPLSTFVSAKWVQGPVQVVRYNSYESVRIGGDAAAGYTTGEAMQEMQDLVARLPQGFGYEWNGLSYQERLAGNQAPILMGLALLVVFLVLAALCESWAIPLSVMLVVPLGMLGAVALVTVLGMSNDVYFQVGMVTVIGLAAKNAILIVEFAKDQYARGQGLYESAVEAARLRFRPILMTSLAFILGVVPLAIATGAGAASQRAVGIGVLGGMLAATPFAVIFVPTFFVVVLGLFKTRPRLLGAELRAFEEEQAAKRAAEQQQPQDGAATPAPQTGGQENKE

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Crispr_ID: LS483424_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483424_6

3160029-3160103

Orphan

Consensus_repeat	Method
TGCCTGTCCCCGCGGGGACAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483424_6

>merge|LS483424|6|3160029-3160103|CRISPRCasFinder
TGCCTGTCCCCGCGGGGACAGGCGCCCCGCACCCTGCGCCACGCCCATTCGGTGCCTGTCCCTGCGGGGACAGGC

>LS483424|6|6|3160029-3160103|CRISPRCasFinder
TGCCTGTCCCCGCGGGGACAGGC	GCCCCGCACCCTGCGCCACGCCCATTCGG
TGCCTGTCCCTGCGGGGACAGGC

Protein	Signature genes	Signature genes Name	Protein_function
LS483424.1\|SQH18120.1\|3153758_3154241_+\|FlgN-protein	unknown	unknown	gnl\|CDD\|377465
LS483424.1\|SQH18131.1\|3165411_3167469_-\|Chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|236712
LS483424.1\|SQH18126.1\|3160756_3161146_-\|Chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|170568
LS483424.1\|SQH18123.1\|3157114_3158731_-\|Flagellar-biosynthesis-protein-flhA	unknown	unknown	gnl\|CDD\|235672
LS483424.1\|SQH18119.1\|3153451_3153742_+\|Anti-sigma-28-factor	unknown	unknown	gnl\|CDD\|274802
LS483424.1\|SQH18121.1\|3154748_3156617_-\|Flagella-associated-GTP-binding-protein	unknown	unknown	gnl\|CDD\|237802
LS483424.1\|SQH18134.1\|3168850_3169726_-\|Chemotaxis-protein-MotA	unknown	unknown	gnl\|CDD\|181655
LS483424.1\|SQH18125.1\|3160115_3160748_-\|chemotaxis-regulator-CheZ	unknown	unknown	gnl\|CDD\|236868
LS483424.1\|SQH18129.1\|3163116_3164823_-\|Dipeptide-chemoreceptor-protein	unknown	unknown	gnl\|CDD\|185008
LS483424.1\|SQH18124.1\|3158734_3159889_-\|Flagellar-biosynthetic-protein-flhB	unknown	unknown	gnl\|CDD\|235569
LS483424.1\|SQH18127.1\|3161198_3162251_-\|Chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
LS483424.1\|SQH18117.1\|3152023_3152431_-\|Putative-proximal-rod-protein	unknown	unknown	gnl\|CDD\|180196
LS483424.1\|SQH18118.1\|3152578_3153325_+\|flagellar-basal-body-P-ring-biosynthesis-protein-FlgA	unknown	unknown	gnl\|CDD\|180794
LS483424.1\|SQH18115.1\|3150839_3151544_-\|Basal-body-rod-modification-protein-flgD	unknown	unknown	gnl\|CDD\|183638
LS483424.1\|SQH18130.1\|3164896_3165397_-\|Chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|182587
LS483424.1\|SQH18122.1\|3156613_3157111_-\|Flagellar-biosynthesis-protein-flhA	unknown	unknown	gnl\|CDD\|235672
LS483424.1\|SQH18116.1\|3151591_3152011_-\|Putative-proximal-rod-protein	unknown	unknown	gnl\|CDD\|235556
LS483424.1\|SQH18128.1\|3162247_3163108_-\|Chemotaxis-protein-methyltransferase	unknown	unknown	gnl\|CDD\|236725
LS483424.1\|SQH18132.1\|3167495_3167876_-\|Chemotaxis-protein-CheY-homolog	unknown	unknown	gnl\|CDD\|381110
LS483424.1\|SQH18133.1\|3167890_3168838_-\|Chemotaxis-protein-MotB	unknown	unknown	gnl\|CDD\|236365

Protein	Function_ID	Function_description	E-value
LS483424.1\|SQH18120.1\|3153758_3154241_+\|FlgN-protein	gnl\|CDD\|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	5.22082e-22
LS483424.1\|SQH18131.1\|3165411_3167469_-\|Chemotaxis-protein-CheA	gnl\|CDD\|236712	PRK10547, PRK10547, chemotaxis protein CheA; Provisional.	0
LS483424.1\|SQH18126.1\|3160756_3161146_-\|Chemotaxis-protein-CheY	gnl\|CDD\|170568	PRK10610, PRK10610, chemotaxis protein CheY.	5.00518e-68
LS483424.1\|SQH18123.1\|3157114_3158731_-\|Flagellar-biosynthesis-protein-flhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
LS483424.1\|SQH18119.1\|3153451_3153742_+\|Anti-sigma-28-factor	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	2.0327e-15
LS483424.1\|SQH18121.1\|3154748_3156617_-\|Flagella-associated-GTP-binding-protein	gnl\|CDD\|237802	PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.	0
LS483424.1\|SQH18134.1\|3168850_3169726_-\|Chemotaxis-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	1.34135e-169
LS483424.1\|SQH18125.1\|3160115_3160748_-\|chemotaxis-regulator-CheZ	gnl\|CDD\|236868	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional.	8.42025e-119
LS483424.1\|SQH18129.1\|3163116_3164823_-\|Dipeptide-chemoreceptor-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	3.93344e-130
LS483424.1\|SQH18124.1\|3158734_3159889_-\|Flagellar-biosynthetic-protein-flhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	0
LS483424.1\|SQH18127.1\|3161198_3162251_-\|Chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
LS483424.1\|SQH18117.1\|3152023_3152431_-\|Putative-proximal-rod-protein	gnl\|CDD\|180196	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.	1.51778e-66
LS483424.1\|SQH18118.1\|3152578_3153325_+\|flagellar-basal-body-P-ring-biosynthesis-protein-FlgA	gnl\|CDD\|180794	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA.	5.34005e-83
LS483424.1\|SQH18115.1\|3150839_3151544_-\|Basal-body-rod-modification-protein-flgD	gnl\|CDD\|183638	PRK12633, flgD, flagellar basal body rod modification protein; Provisional.	1.48092e-136
LS483424.1\|SQH18130.1\|3164896_3165397_-\|Chemotaxis-protein-CheW	gnl\|CDD\|182587	PRK10612, PRK10612, chemotaxis protein CheW.	9.03634e-84
LS483424.1\|SQH18122.1\|3156613_3157111_-\|Flagellar-biosynthesis-protein-flhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	3.97046e-54
LS483424.1\|SQH18116.1\|3151591_3152011_-\|Putative-proximal-rod-protein	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	7.50281e-77
LS483424.1\|SQH18128.1\|3162247_3163108_-\|Chemotaxis-protein-methyltransferase	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	7.35944e-146
LS483424.1\|SQH18132.1\|3167495_3167876_-\|Chemotaxis-protein-CheY-homolog	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.58059e-44
LS483424.1\|SQH18133.1\|3167890_3168838_-\|Chemotaxis-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	0

>LS483424.1|SQH18124.1|3158734_3159889_-|Flagellar-biosynthetic-protein-flhB
MAEESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVVGVWLSGSMLYQGLTGVLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFSTKPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWVIWHYHDDMLGLMHVAPSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKESEGDPHVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIAARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAVAEVLAWVFQLRSWRPGLGREPQAPTALAVPAELDPHSPPATQGA
>LS483424.1|SQH18123.1|3157114_3158731_-|Flagellar-biosynthesis-protein-flhA
MSALLSMLKTNGAANAKLLAGPILIVLVLGMMVLPLPTFLLDLLFTFNIALSVMILLVAMFTRKPLDFAAFPSVLLFATLLRLSLNVASTRVVLLNGHQGPDAAGKVIEAFGHFLVGGNFAVGIILFVILTIINFIVITKGAGRIAEVGARFTLDAMPGKQMAIDADLNAGLIGEDEARKRRAEVAQESDFFGSMDGASKFVRGDAIAGLLIMVINVIGGLIVGVAQHDLSVGESARVYTLLTIGDGLVAQIPALVISTAAGVVVSRVATDQDVGQQILSQLFSNPNVMFLTAAIVGIMGLIPNMPHLAFLTLAALLAGCGWMVYKRNLAAASQAQQPAETAAAQAQAAASEATWEDVSMVDQLGLEVGYRLIPLVDHAQNGELLHRIRSLRKKFAQDVGFLPPVVYIRDNLELKPNDYRILLSGVEIGRGVAMPGQWLAIDPGGVAMQVKGTPTTDPAFGLPALWIDSGQRDQAQVAGYTVVDASTVVATHLNHLMHRHGDNLLGRQEVQALIERIGRESPKLVEDLVPKTLSLTTL
>LS483424.1|SQH18122.1|3156613_3157111_-|Flagellar-biosynthesis-protein-flhA
MLQGLLAEEVPIRDMRTIVDTLSEHAPRLAALAANAGGQPDVHELVALTRRSLGRAITQQWFPGEGELRVIGLDVRLERVLTQAMATSGGLEPGLAETLLRETEAALARQEAQGNAPVLLTSPPLRAPLSRFLRHHLPQLGVLSNAEIPDERVVRVTVLIGGNGE
>LS483424.1|SQH18121.1|3154748_3156617_-|Flagella-associated-GTP-binding-protein
MKLSRFVAASSREVMRLVREALGPDALIVSNRSVAEGIEVVATLDETPAAASATPLPDAPAAPPADMPAADAPAPLSMARLPDAPMPAAMPAGRVSPGLEAGVQAAIDALRGSLESRMDGLLWSTREGPGREPVGAGLFRALLEAGFSMPLARILLERLPQALDATQALAWARNELVTHLPVLRREDDLLAGGGVFALVGPTGVGKTTTLAKLAARCVAREGREQVAMLTTDNFRIGALEQLQIYGRLMGIPAHSVRDADELRDALGSLGNRRIILIDTTGISQRDRQVAGQAAMLCNAGKPVRRLLVLNAASQGDTLDEVAHAYRNGVGEDVVGCIITKLDEASRLAPALDTAIRHRLPIHYVSYGQKVPEHMALARADELIDRTLATLQRVKPLYAPSEADLAALCSASREQARDEPAQRRQMLAATLLGQGGAAARDLDGALDWLRDDPACAQARGHGRPGHGPGAGRRGAGPGAPGLSRRQQPLSAGHARQGGAARRRPAAGHLAVGFADERPRRGAGRARPAIDAAAWPAGGVRAGRTGRRQSDSGPAGAHRLPVGRAGSIAARACVRRRLGPAMAGAGRAGRRVAGALRRRHAGAAGPVSHFAQGRGPRAGIPAGG
>LS483424.1|SQH18120.1|3153758_3154241_+|FlgN-protein
MNSAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSDAGLASGPAGTDAAAAAHPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQAAGTGAAATYDAQGRGKRGYSSAASGRAIVAT
>LS483424.1|SQH18119.1|3153451_3153742_+|Anti-sigma-28-factor
MKIQSSTSHPVGPNAVGARAEHAVAQAYGGGAQAGSGSAQVALSPASRQLLAQEGGSDIDVERVAAIRAAIASGQLRIDPTRIADSLIASARDLLK
>LS483424.1|SQH18118.1|3152578_3153325_+|flagellar-basal-body-P-ring-biosynthesis-protein-FlgA
MRGTAPFYNLPIMKSPRSRSIARLAALAILAGAMPRAAAEPPAQDPAELAAAAESYLRQQLAALPGEPSITLDPLRTDRLDACEALTPFMPSGMRVRARMTVGLRCVAPRTWTVYAQATVSVPGQYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAAAILGMRPAHRIAAGQPIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPSATVQVRTASGQVVSGIVQAAGLVEIQL
>LS483424.1|SQH18117.1|3152023_3152431_-|Putative-proximal-rod-protein
MLDRLNEDFRFFQQSIALRAQRQEVLSSNIANADTPNYKARDFDFKAAMQGALEQRMRLPDTNLALTSARHIPGQATTPSPAELMYRLPYQPSLDGNTVDMDSERVRFADNTLHYQSSLQVLSGRIRSLMSAIQE
>LS483424.1|SQH18116.1|3151591_3152011_-|Putative-proximal-rod-protein
MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRARQVVFQVNPPPGQAFGQEIGGVRVAGVVEDQSPFKKIYDPKHPMADAQGYVNMPNVDPVAETVNMIAASRSYQANVEVLNTAKQLMLKTLTIGQS
>LS483424.1|SQH18115.1|3150839_3151544_-|Basal-body-rod-modification-protein-flgD
MTTVNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSASDADANPVKTEALTYGQVKSVAYSTNGLRLDLGLAGQISMLDVRKVIGASGSA
>LS483424.1|SQH18125.1|3160115_3160748_-|chemotaxis-regulator-CheZ
MNATDTGMQADPTDLIQRIASLTRMLRDSMRELGLDQAIKDAAEAIPDARDRLRYLAQMTEQAANRVLNAIEAAGPIQDGMARGAQALDERWQQWYDQPLELPQARALVQDTRAFLAAVPQHTQQTQAKLMEIVMAQDFQDLTGQVIMRMMDVVGAIERELLQVLLDNVPQERRDEANSLLNGPQVNPGGKADVVTSQDQVDDLLASLGF
>LS483424.1|SQH18126.1|3160756_3161146_-|Chemotaxis-protein-CheY
MVDKGMKILVVDDFPTMRRIIRNLLKELGFENVDEAEDGAIGLEKLRNGAFQFVVSDWNMPNLDGLEMLKQIRADAALKSLPVLMVTAEAKKENIVAAAQAGANGYVVKAFTAATLEEKLNKIFEKLAG
>LS483424.1|SQH18127.1|3161198_3162251_-|Chemotaxis-response-regulator-protein-glutamate-methylesterase
MKKIKVLCVDDSALVRGLMTEIINSHPDMEVVATAPDPLVARELIKKHNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTERGGEITLRALELGAIDFVTKPKLGIRDGLIEYSEVIADKIRAASRARLRAPAPAGHAAPLRLRSPFASSEKLVIVGASTGGTEAIREVLQPLPADSPAILITQHMPAGFTRSFAQRLDALCAVTVREASDGERVLPGHVYLAPGGETHMRLGRSGANYVIGLQASEPVNRHRPSVDVLFHSAAEAAGGNAIGVILTGMGKDGAAGLLAMKRAGARTMAQDEASCVVFGMPREAIALGAADEVMPLADISERILTRLGDRGHRV
>LS483424.1|SQH18128.1|3162247_3163108_-|Chemotaxis-protein-methyltransferase
MATAMTTPAFSAERQFEFRDADFARVRQMIYARAGISLGAHKREMVYSRLARRLRALGQQEFRVYLDGLENEPAAPEWEDFVNALTTNLTAFFRESHHFPILADFARQRGGPVSVWCCAASTGEEPYSIAMTLVESLGARAQASQLLATDIDTNCLQRARAGVYPYERVAKLDPARLKRFFMRGRGANEGQVKVRAELADMVRFETLNLLAPHWPINEKFDAIFCRNVMIYFDKPTQARILRRFVPLLKPGGLLFAGHSENFTYISRDFRLRGQTVYEQASGELPV
>LS483424.1|SQH18129.1|3163116_3164823_-|Dipeptide-chemoreceptor-protein
MRKFLANLSIRGSLLGVLAFFSFMLVVGAALGVLSLRVSNDTLQGVKQTQDVADAMDRVVNSYKDAFNGLGRAAASHYGAIVSAIGQPVQVEQGLGSEAAGLLQRAKASLNRAETEYEYYKGLARPASAADSLKEVENAFEALVGQGLHPLAAALEKGDMAGYQSHAQNVLDALEGRFSGAIAAFDFWRASELLDAHEVAETRYRFVLAAVAAGGVLAALLVFSTYLFLRRRVLQPLREVGQHFDKIAAGDLTARVDVRNSNEIGQLFAGLKRMEESLTRTVAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQANQLAGVASDVAERGGSAVSEVVATMQDISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVGKVGTGSQQVERAGATMQEIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQEQAQRLAEAVAVFRINAGEVIEVPAHQLGSRQAPGARETALAHDDALALGH
>LS483424.1|SQH18130.1|3164896_3165397_-|Chemotaxis-protein-CheW
MAAKPHTQATRAEDVGNEFLVFTLGEEEYGIDILKVQEIRGYDAATVTRIANVPSFIKGVTNLRGIIVPIVDLRIKFNLGSVEYNEQTVVIILNLDRRVVGIVVDGVSDVLMLNAAQVRPAPEFGATLSTEYLTGLGTVDERMLILVDIEKLMTSDEMALVEKVAS
>LS483424.1|SQH18131.1|3165411_3167469_-|Chemotaxis-protein-CheA
MSSGLDLSQFYETFFDEADELLAQMEQLLLELDVGAPDIEQLNAIFRAAHSIKGGAATFGCFQKLAGTTHLLENLLDAIRRGEMGLRADMVDIFLETKDVLKSQLDAYRASEEPEDAVFERICAVLRQLALEGGQAPAAAAPAPVAASEPGPEPEPAPQPAAASTAAGLPLRVRFSKVSDKDAQSLLEEMGNLGDVRASERAGQTLTVWVDTTCSPDDIEAVCCFIIDADQLEIAREAEPAHASAQAAVAAAPDAAATPAPVAAPAAAQAAEPARAARPSIAPAHADKESTSIRVGVEKVDQVINLVGELVITQAMLAQTASTLDPVLHDRLLNGMEQLERNARDLQEAVMSIRMMPMDYVFSRFPRLVRDIAGKMGKQIELQTYGRATELDKSLIERIIDPLTHLVRNSLDHGIETPDKRVAAGKEPVGQLVLSAQHNGGNIVIEVSDDGGGLSRERILRKAVAQGLTVNENSPDDEIWQLIFAPGFSTGDQVTDISGRGVGMDVVRRNIQDMGGHVQLSSVPGQGTTTRIVLPLTLAILDGMSVRVGEETFILPLNHVTESLQPQADQIYSVAGNERVMQVRGEYLPLVEMHRVFSVGQAQADPTQAIAVIMQAEERRFALLVDHLVGQHQVVVKNLESNYRKVPGISAATILGDGSVALIVDVFALARANREKWSQPEAILN
>LS483424.1|SQH18132.1|3167495_3167876_-|Chemotaxis-protein-CheY-homolog
MTARILVADDSATMRMIVQAALTGAGWQVVTASDGKQALELAQAQAVDLVVSDWNMPVMGGLDLIRGLRGQARYQDLPVLVLTTEDDGDSKAAARDLGVCGWLNKPLDPDVLVDLAAELLGVAPGA
>LS483424.1|SQH18133.1|3167890_3168838_-|Chemotaxis-protein-MotB
MSTVNNHRVVIRRRKVRRGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYFRMPLRVALTGGPSSSAETSAIPGGGQDPLRSQGDVRRAEGNRVEAQPMGDAERRDRHRLERLKVRLENLIEESPVLKNFRPQLLIDMTTEGLRIQIVDNQNRPMFATGSADVQPYMRDILRELGPVLNDLPNKISIAGHTDASQYARGERAYSNWELSADRANASRQELVAGGMHEGKVLRIQGLASSMSLVKDDPFAAVNRRISLVVLNASTQRRIENENAAAADVNARDAQGVGAALAGQLAASGSDGGAR
>LS483424.1|SQH18134.1|3168850_3169726_-|Chemotaxis-protein-MotA
MLIVIGYAVVILAVVGSFIGLGGHLGALYQPFELTLIAGAAVGAFMAGNSRKSLGLVAKAIPEAFRSSPYSKDVYMELMALLYVLLNKARREGLMAIESHIEDPLSSPIFNEYPRIMKDAKLMEFITDYLRIMISGNMSSFEIETLMDEEIETYRHEREVPTHALQQVADALPAFGIVAAVLGVIKALAAVDQPPAILGDLISKAMVGTFLGVLLAYGFVAPMAARIERRTSESVKVLECIKVTLLASMNGYPPQLAVEFGRKVLFSAVRPSFGELEEHVRQAKSAATGRA

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Crispr_ID: LS483424_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483424_8

3693563-3693649

Orphan

Consensus_repeat	Method
GTCCCCGCGGGGACAGGCACCACG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of LS483424_8

>merge|LS483424|8|3693563-3693649|CRISPRCasFinder
GTCCCCGCGGGGACAGGCACCACGTTCCCCCGCACCACCCTCCCCGCTCCTAAGACGGTATCCGTCCCCGCGGGGACAGGCACCACG

>LS483424|8|8|3693563-3693649|CRISPRCasFinder
GTCCCCGCGGGGACAGGCACCACG	TTCCCCCGCACCACCCTCCCCGCTCCTAAGACGGTATCC
GTCCCCGCGGGGACAGGCACCACG

Protein	Signature genes	Signature genes Name	Protein_function
LS483424.1\|SQH18631.1\|3685916_3687209_+\|putative-glutamate-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|274820
LS483424.1\|SQH18645.1\|3708643_3709012_-\|Protein-of-uncharacterised-function-(DUF861)	unknown	unknown	gnl\|CDD\|225981
LS483424.1\|SQH18629.1\|3684160_3685441_-\|Arsenic-efflux-pump-protein	unknown	unknown	gnl\|CDD\|185342
LS483424.1\|SQH18639.1\|3701201_3703178_+\|Regulator-of-CsrB-and-CsrC-decay-CsrD	unknown	unknown	gnl\|CDD\|379843
LS483424.1\|SQH18643.1\|3705307_3706000_-\|putative-hydrolase	unknown	unknown	gnl\|CDD\|182251
LS483424.1\|SQH18638.1\|3700502_3701186_+\|Bacterial-protein-of-uncharacterised-function-(DUF920)	unknown	unknown	gnl\|CDD\|226198
LS483424.1\|SQH18641.1\|3704042_3704951_-\|Aromatic-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|181731
LS483424.1\|SQH18636.1\|3692874_3693540_+\|Transcriptional-regulatory-protein-uhpA	unknown	unknown	gnl\|CDD\|225107
LS483424.1\|SQH18627.1\|3681974_3683111_+\|Crotonobetainyl-CoA:carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|367110
LS483424.1\|SQH18634.1\|3689233_3691408_+\|RTX-I-toxin-determinant-B	unknown	unknown	gnl\|CDD\|274550
LS483424.1\|SQH18633.1\|3689040_3689256_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483424.1\|SQH18637.1\|3693774_3700422_+\|Staphylococcus-aureus-surface-protein-A	unknown	unknown	gnl\|CDD\|333740
LS483424.1\|SQH18632.1\|3687560_3689030_+\|Outer-membrane-efflux-protein-BepC-precursor	unknown	unknown	gnl\|CDD\|273829
LS483424.1\|SQH18642.1\|3704920_3705235_-\|Aromatic-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|181731
LS483424.1\|SQH18635.1\|3691410_3692853_+\|Type-I-secretion-system-membrane-fusion-protein-PrsE	unknown	unknown	gnl\|CDD\|130902
LS483424.1\|SQH18630.1\|3685437_3685764_-\|Probable-HTH-type-transcriptional-regulator-ygaV	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
LS483424.1\|SQH18640.1\|3703226_3703853_-\|nicotinamidase/pyrazinamidase	unknown	unknown	gnl\|CDD\|238494
LS483424.1\|SQH18646.1\|3709334_3710225_+\|Glyoxalase-like-domain	unknown	unknown	gnl\|CDD\|379203
LS483424.1\|SQH18628.1\|3683154_3684120_+\|Argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|270234
LS483424.1\|SQH18644.1\|3706048_3708544_-\|Copper-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783

Protein	Function_ID	Function_description	E-value
LS483424.1\|SQH18631.1\|3685916_3687209_+\|putative-glutamate-synthase-subunit-beta	gnl\|CDD\|274820	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.	1.21991e-156
LS483424.1\|SQH18636.1\|3692874_3693540_+\|Transcriptional-regulatory-protein-uhpA	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.19301e-24
LS483424.1\|SQH18629.1\|3684160_3685441_-\|Arsenic-efflux-pump-protein	gnl\|CDD\|185342	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB.	0
LS483424.1\|SQH18639.1\|3701201_3703178_+\|Regulator-of-CsrB-and-CsrC-decay-CsrD	gnl\|CDD\|379843	pfam16448, LapD_MoxY_N, LapD/MoxY periplasmic domain. This domain is the N-terminal periplasmic domain of the LapD and MoxY receptor proteins.	3.66319e-38
LS483424.1\|SQH18643.1\|3705307_3706000_-\|putative-hydrolase	gnl\|CDD\|182251	PRK10119, PRK10119, putative hydrolase; Provisional.	2.80135e-80
LS483424.1\|SQH18641.1\|3704042_3704951_-\|Aromatic-amino-acid-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
LS483424.1\|SQH18638.1\|3700502_3701186_+\|Bacterial-protein-of-uncharacterised-function-(DUF920)	gnl\|CDD\|226198	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General function prediction only].	8.27062e-29
LS483424.1\|SQH18627.1\|3681974_3683111_+\|Crotonobetainyl-CoA:carnitine-CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.85561e-148
LS483424.1\|SQH18634.1\|3689233_3691408_+\|RTX-I-toxin-determinant-B	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
LS483424.1\|SQH18645.1\|3708643_3709012_-\|Protein-of-uncharacterised-function-(DUF861)	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	1.25112e-24
LS483424.1\|SQH18637.1\|3693774_3700422_+\|Staphylococcus-aureus-surface-protein-A	gnl\|CDD\|333740	NF012211, tand_rpt_95, tandem-95 repeat protein. This 95-amino acid repeat occurs in tandem in proteins that may be several thousand amino acids long.	1.20527e-16
LS483424.1\|SQH18632.1\|3687560_3689030_+\|Outer-membrane-efflux-protein-BepC-precursor	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.98618e-74
LS483424.1\|SQH18642.1\|3704920_3705235_-\|Aromatic-amino-acid-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	5.53287e-47
LS483424.1\|SQH18635.1\|3691410_3692853_+\|Type-I-secretion-system-membrane-fusion-protein-PrsE	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.83731e-118
LS483424.1\|SQH18630.1\|3685437_3685764_-\|Probable-HTH-type-transcriptional-regulator-ygaV	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	2.26872e-12
LS483424.1\|SQH18640.1\|3703226_3703853_-\|nicotinamidase/pyrazinamidase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	1.08247e-67
LS483424.1\|SQH18646.1\|3709334_3710225_+\|Glyoxalase-like-domain	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.79093e-31
LS483424.1\|SQH18628.1\|3683154_3684120_+\|Argininosuccinate-lyase	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.10162e-113
LS483424.1\|SQH18644.1\|3706048_3708544_-\|Copper-transporting-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>LS483424.1|SQH18636.1|3692874_3693540_+|Transcriptional-regulatory-protein-uhpA
MHATPVLLVTDDDLLWQHWRGLDAARWLPARGRGLASLQQWQGQGRQLVVLDASVARLPAWDAPQWQELTVGLRLVVASSRPSDAQGTQVFAAGAYGYCHSHAPLASLMQVLEVVSGGGIWMGRSLVTRLLKLVDERVPSAPAPWQHDRLTERENAVALRAAHGDSNADIAGELGITERTVKAHLSAAFEKLGVSDRLQLALCVHGISTRTPAPRTGTDGR
>LS483424.1|SQH18635.1|3691410_3692853_+|Type-I-secretion-system-membrane-fusion-protein-PrsE
MQNTQNATLAAPPARQGSLLGALWRVPRGWIMGLFDRLLDGAERKDGPSPANYVGNAEWAIRQADARGSRVLLWASLLATLALLLWAGFGYIDEVVRGEGKVVPSRQVQIVQSLDGGIVEEILVRPGEAVETGQVLLKIDPTRFASSLGENNAEYLSLLAKAARLKALATGEPFVAPEKVLQEAPAIVEMERNTWQARTSELNATVNVAREQLKQREEELRETIAKRDQASASCGLTSRELQVTRPLLKSGAVSEVDLLRLQRDVARYCGEQKGAEAQIDRIGASIKEAQSKLQEAELNIRNQARSELSETNTKLATLREGQAALADRVKLADIRSPVRGTVKSLFSNTVGGVVQPGKDIIEIVPTDDTLLLEVRVLPRDIGFLHPDQKAEVKFTAYDFAIYGGLEGHVEQIGADTVTDEKGNSFYIVRVRTNSATLGDRKLPIIPGMVAEVHILTGKRTVLQYLLKPILRAKENAFTER
>LS483424.1|SQH18634.1|3689233_3691408_+|RTX-I-toxin-determinant-B
MTTDKFSDPATRSWRADPHASHEDPLLDCLVELTRIHGVPATAQAPSSGLPLVEHRLTPALLPRAAARAQMSARTVKRTLDEISPELLPAILLLRGERACLLLGTAPGGKYLISHPELGASAVEMDADLLQEDYTGLACFVRPQFRFDARAPEVVKVRSRHWFWAAIAENRRLYRDALIAALLINVFAMAMPLFTMNVYDRVVPNNAIETLWVLALGIGLVVLFNLVLTTARAHVVDSASKRVDIRLSAQIMERVLDLRMEGRPVSVGSFAANLRSFESIRDFIASASITTLVDLPFTLLFLAALAWISPWLIAPPLVAIALILLVSLAAQARMETLTMASYQASAQRNATLVEALAGFEAVKTLNGQGAIQRNWERSTEFIAQNGGKLKLISASTVGFVQAMQQLVSVAVVIIGVFQAQESAMSMGGIIAASMIAGRCLTPFGQVAALLMQYQNARTSLGSIDNYMNLPVERPAGTEFLHRPVFQGGIEFRDVTFAYPGASQPALKKVSFKLAPGEKVGVIGRIGSGKTTLEKLALALYQPTEGAVLVDGVDVRQIDPADLRRAIGHVPQDPVLFYGSLRHNLAMGAPHADDASILAAANAAGVTEFANVHPNGFDMMIGERGESLSGGQRQSVAIARALINDPPILLLDEPSSNMDHQSESQLRKRLKAASADKTILLVTHRTALLDLVERLIVIDNGHIVADGPKEQVVEALRQGRVGRGS
>LS483424.1|SQH18633.1|3689040_3689256_+|Uncharacterised-protein
MSASNDNGFSKLDADFVRVLEDLIDALIKNGTLRLTDLPPQAQRKLTERKRHRARLAEDLDLLDDDDGQVL
>LS483424.1|SQH18632.1|3687560_3689030_+|Outer-membrane-efflux-protein-BepC-precursor
MPTFSFKRTTAIVAVLFAPAAYAQQQAGTTLNQVVEQTLLSNPEIQAKYHDFRASMEGQNVARGGLRPQVNAQGFVGKEWRSNVPDRGSYNWSRPGYSVELRQLIFDGFRTSNDVKQAGYDKLGRFYELLATSDSTAYSAVQAYVDLQRYREMELLARQNYSLHEDTLKQIREHAESGVGRRVDLEQAGGRLALAQTNLMTESANLIDVQQRFQRITGMTPAVDLQPVPDVAGKLPQQPANFDDSLRMNPSFLAKQAYLQAANAGVASAKGAFSPKFEFVAATGRDREQPEPQYRDVQSSSVQLVMSYNLYRGGADSARVRQTAEQSYAARDVRDYTCRNVQQDLAVAWNNIVRLREQIPFLRDHEIATAKVRNAYREQFQIGQRSLLDLLDTENELFESRRALANGMADLQLAQYRWLALSHKILPALSVQPARDEMPEENAVLETTDEVLKLCNSPVPDVSRLAPVQVIYNSGAKPPTFVPADKARP
>LS483424.1|SQH18631.1|3685916_3687209_+|putative-glutamate-synthase-subunit-beta
MSPDSLSAVAAPQAGAPSPRAARVAIIGAGPAGLMAAETLAGHGLRIDVYDAMPSVGRKFLLAGRGGLNLTHSEAPQAFGARYGARADWVAQWLAQWDAQALRAWAHGLGVETFVGTSGRVFPREMKAAPLLRAWLARLRGAGVGFHMRHRWLGWPAGEPASPQALRFGTPDGALAVRADAVVLALGGASWARLGSDGAWTATLREHGVAVAPLRPANCGFEADWSEPMRQRATGQPAKAVAMALAPDGPWRRGEFVVTDSGIEGSLVYACSAGLRDAIDVRGAATAWLDLLPDWPAERVAAAVMHPRGARSMSSHLQSRLGIKGVKAALLRECAGAEAYADAGLLARRIKALPLRLLRTRPIDEAISSAGGVERAALDARLMLAKAPDVFCAGEMLDWEAPTGGYLLTAVMASGVVAGRGVLAWLRDGL
>LS483424.1|SQH18630.1|3685437_3685764_-|Probable-HTH-type-transcriptional-regulator-ygaV
METNAAIKALVVLGHASRLTAFRLLVQAGAEGVAAGQLAQAMGIAPSSLSFHLKELVQAGLLEARQDGRFVIYAARYDTMAGLIAYLTDNCCQGAPCDAAPCTREPRA
>LS483424.1|SQH18629.1|3684160_3685441_-|Arsenic-efflux-pump-protein
MITAAVIFLFTLTLVIWQPRGLGIGWSACLGAAISLATGVVHWSDIPVVWGIVWNATAAFIAIIIVSLLLDEAGFFEWAALHVARWGRGRGRMLFAWIVLLGAAVSALFANDGAALILTPIVMAMLAALGFGAGATLAFVMAAGFVADTASLPLIVSNLVNIVSADYFGIGFNRYAAVMIPVTLVSVAATLAVLLLRFGASVPARYDASQLKAPRAAIRDPRTFRAGWMVLALLLVGFFGLEPLGVPVSATAAAAAAVLLAVAGRGHFISTRKVMREAPWHIVVFSLGMYLVVFGLRNAGLTQSLADLFGWFASHGLWAATYGVGLVTALLSSVMNNLPTVLVGALSIDASSASGAAREAMVYANVIGSDLGPKITPIGSLATLLWLHVLARKGVRISWGYYFKVGIVLTLPVLLLTLGALALRLS
>LS483424.1|SQH18628.1|3683154_3684120_+|Argininosuccinate-lyase
MHSFKSALLASAVLALAAGTAGAADTYPGDKPIKIVAAFSPGSATDTSARIIAEELRKDLGANVIVENKPGAQGLIGTEYAVRQPGDGYTLTIASSSLNSINPGLFKKLPYDAQKDFTHISRLTTMPMLVLVRGDGDIKTLDQLVQKAKAGSLNYGYGSPGGQVGAVAFNNIAGIRAEGVPYKSQPPALTDLAGGQVDYVLGDLSVATPLLRAGKIRALAVSTEQRLPDLPEVPTFAETDYKAFDLVVWVGLSGPAGIPPEVAQRLNDSVNKALARPEIQEKFKGLGMTTAPNTLAQQQQFVQSQLDTWGRRMREANIQPE
>LS483424.1|SQH18627.1|3681974_3683111_+|Crotonobetainyl-CoA:carnitine-CoA-transferase
MQSSDSGGALAGLRVIDASRVLAGPFCGQMLGDHGAEVIKIESPEGDECRGFGPPFVDGASAYFRAVNRNKRSMVLDLNSEAGRETLWQLLETADVLIENFKASTLRAWGIADPAEITARFPRLVHCRITGFGDDGPLGQLPGYDAAVQAIAGLLSINGEAGGPPVRLGVPVVDLTTGMNAAIAVLLALQARHRTGRGQMADVALYDSAVSVAHPFLTNYLASGKTPGPSGNGHPNIVPYNVYRTRTCPLFIAVANDRLFAKLCAQLGVAELAADARFATNGQRVVNREALDAALSQAFAQVDGEPFGQQLLAQNVPAAPILDIAAVAAAPHTAHRRMVVQQPDYTGPGIPIKLSHTPAAIRRGPPALGEMAAPPPKR
>LS483424.1|SQH18637.1|3693774_3700422_+|Staphylococcus-aureus-surface-protein-A
MANSSPAVVTAVTGRAWIRNSDGSLTELHEGSKVPQGSDIVTASGSTVALQVDGGMPLVIGEGREVAVTPDLNGGGGDASEAAVALPTTTDSERLLAALQDGRDPFDELDPTAAVIGGSGDSAGSSFVRLAKILESTTPMDLAYPNPGRGEDGVRTFLGGATAGADDEAAPAPANQAPNALDDLGQTRQGQTLRGNLMLNDSDPDGDPLAVVSVNGRPMTSGGLTLPGSGGGTFTVQPDGSYTFVPGNEHQSLGEGQTTTTTITYTITDPSGATSTATLTVTVTGTNDAPTLTPGVTLDDQANDDGEAITPVDISGQFEDIDNGDTLTFTADGLPPGLTLDPATGIISGTLDNSASQGGNNGVYTVTITATDSGGKSVSQTFEWDVTNPAPTAVADTGATDEDTTLTVTDPAQGVLRNDTDPDNDDLHVSAVNGQPANVGAAIAGDNGGTFTLNADGTYTFNPGPDFQNLAKDATAETSITYTVSDGEGGTSSATLTITVAGGNDAPILTPGVTLDDQANDDGEAITPVDISGQFTDPDTGDTLTFTADGLPPGLTLDPATGIISGTLDNSASQGGANNDGVYTVEITATDANGASVSQTFEWDVNNPAPTAVADTGTTDEDTTLTVTDPAQGVLKNDTDPDNDDLHVSAVNGQPGNVGAAIAGDNGGTFTLNADGTYTFNPGPDFQNLAKDATAETSITYTVSDGEGGTSSATLTVTVTGTNDAPTLTPNVTLDDQANNDGEAITPVDISGQFEDVDNGDTLTFTADGLPPGLTLDPATGIISGTLDNSASQGGANNDGVYTVEITATDANGASVSQTFEWDVNNPAPTAVADTGTTDEDTTLTVTDPAQGVLRNDTDPDNDDLHVSAVNGQPANVGVAIAGDNGGTFTLNADGTYSFNPGNAFQHLAQGDSVETSISYTVSDGEGGTSTTTLTVTVTGVNDTGAISVNLGADDGKVYEAGLDNAADDSETTGGTITVSASDGISSVTIGGQTFTVAQLSGDLSSLPAINTTEGTLTITGYTPSADGKSADITFSYTLNEAQTHSQPGNDTITDNIGVTVTGNGDSETSSSFNITIVDDVPTFQTVTDTVLANEAGQTQTGTLEFESGADGVGSLNITGITGLPNDWTTSAMNNASVNIFSPDGTHVFTVTLNTDGTYTVDQLATRPGTTESVNMGSQITNSPQASYDFGIASVTVLHSNQQVQFNGKGSNVPNVSHEFGIGNTWFEGGESFQMTFESPMLNFNFGIATVNNPGSVKVTLFDGVNTLTLTVPVNAGDTSLSITQDQIQAAAAAAVPPISFGEFSTATLEGVGGLKVSLTTLSYTNSVPADDMDFTVHVTGTDGDGDPAQTEFDVTSGAEAAVVDAFNRVMEDSGDTVGGSVMLSTALAVVSVSVNGTDVTNATAGNPVTFHTGKGTLIVTGYDPQSGALSYTYTEKGQAHNHGNGKNSVHDDFTVTVTDSDGQERSGDLVIQILDSVPTAHADLDNVTEGVTQNVSAADGVLANDTSADGWHHAGAIVGVAAGDTGAISHGKVGQAIDGLYGKLTLNANGSYSYKANASGQGALPGDGQDVFTYTVRDADGDLTSTTLTINIDQFVAGSNDNNTITGGAGNDVMLGDQGGIKQNVTAGTSYNIALVLDLSDSMNDKWGSGSNKPTRLQTAKDALKALLENQLAVHDGEINVSLITFNGSSSALKKSITGLTPENVDEMVDILMGLKASSATPYGAAFDRTTQWFEGQPTVDSEGKPYKNLTFFLTDGEPSTEWSYNRDNEFAELAAISDVHGIGIGSGVSTSTLNKYDNTGGYYTGGQETHVNFSGNSNANNVNTWDKDGTGTVTKNDNAMRITDTTADGQAFKVTMNPDHRMNVTSAGGASFSFALSMGNKNPADKFEWVLMKWDGTQWNEVERGTDASTRTGIHGPGQYGFQFIVNDNSGGGQFYATVDTIRSYTSGRTGNSQTVLDPSDLESALIGGSQSTELAPVGNDKLYGGDGNDILFGDAINTDNLPWGVAGNPAKPADLPNGSGLEALKDFLFLKNGVQPTDADLHKYISENHALFDVDGDTRGGNDELHGGAGSDELHGGEGKDLLIGGQGDDILYGGDGSDTFKWELNDQGVVGAPARDTIKDFSNADIADGGDVLDLGELLQGENSGNLTQFLKFSSDGQDTVIQVNTQGHVNTQGADQTIVLENIDLTAGGTKDDAAIIQDLLSRHKLQVDQ
>LS483424.1|SQH18638.1|3700502_3701186_+|Bacterial-protein-of-uncharacterised-function-(DUF920)
MPLSTRPRKAPRLALAALLSLACGWGGVHALDVDTGKLQSLAASRYGARGARAVDDWLQLLRNDTSASEANQLARVNAFWNQRVLSGEDTHIWGRADYWATPLETLGKGAGDCEDYVIGKYFSLISLGVPTEKLRFIYVRARIGGPYSNQQIAHMVLGYYPTPNAVPLVLDSLISTIMPANERRDLTPVFSFNADGVYVDGKQASPVDRLSRWRDLLLRMEREGLRP
>LS483424.1|SQH18639.1|3701201_3703178_+|Regulator-of-CsrB-and-CsrC-decay-CsrD
MSILRRLLLSLTLAIGIILLGTLVLSINAARGYLSDQLQVQSTDAAVSLALSLSQPANNDPVTQELLVSALFDGGHFSLVRLADPQGAVMVERGAQPAASVPAWFQALAPLANRAASHAVSDGWRQIGEVTLVANDAYAWETLWASSLRMAALIMGAGVLWALFAFALVRWIEKRLLFQVSEQVRAIDSRASGEQAFARVAEFSGIVDALAQTRERVRATAEEQSSHIESLEVELNQDPVTGLANRKYFINEFRRALDEKPADSPALPAPLSSAGGHVLVFRQRDLTALNRHMPRQFIDQWLQSVCQRISALVTAQGLAQSLVARLNGSDFAVLLPHCAAPQAQVIADLVRAELRTLRIPVGEGGLCRWAMALADYAPGTQFNGVLARLDFGLTRAESAGDDHAVLVGPDNADPFSAAGQSAWMDALVTALDQQRFSLAFEPLHAVDGRLVRMEAMLMLHNDDAREPIPAMLFIPAAVRLNLSAECDLQAVRLALDWLAAQPGELAVRLSLPSLGKRSFLRQLELMLADRRAQVGRLYLEVDAHGLVDREGDVIALERIAAHFGAHVGLRRLAQQFGAMSRLHSLPLAYVKLGGGFVGGMSQSPGSRQLAGSVIDTARALNIDVYAEDVPDAATRDILASMGVEVMRGPGVTPPPAQE
>LS483424.1|SQH18640.1|3703226_3703853_-|nicotinamidase/pyrazinamidase
MGKRYAKLDKNNVAVLMVDHQVGLLSLVRDIDPDKFKNNVLAVADLATYFKLPTILTTSFEDGPNGPLVQELKDQFPEAPYIARPGQINAWDNEDFVKAVKATGKKQLLIAGVVTEVCVAFPALSAIEEGYEVFVVTDASGTFNEVTRHSAWSRMEQAGAQLMTWFGVACELHRDWRNDIEGLGALFSSHIPDYRNLIAAYTTVKGGK
>LS483424.1|SQH18641.1|3704042_3704951_-|Aromatic-amino-acid-aminotransferase
MQTLGGSGALKVGADFLKRYFPKSEVWVSDPSWENHRTIFEGAGFAVHTYPYYDDASGGLRFDEMLATVGGLPAGSVVLLHACCHNPTGVDLDRAQWDALIPVLRERGLIAFVDMAYQGFGDGLDDDAYAVRALAEAGVTCVVANSFSKNFSLYGERCGGLSVVCETAEQAGCVLGQLTSTIRAIYSNPPTHGARIVAQVLGTPALRQSWEAELGAMRERIQAMRRAIHDGLAGRVEPRMLQRYLSQRGMFTYTGLGAEQVETLRRDQGVYLLRSGRMCVAGLNRDNVAVAADAIASVLARG
>LS483424.1|SQH18642.1|3704920_3705235_-|Aromatic-amino-acid-aminotransferase
MFEHVQAYPGDPILSLNEDFQKDPRAGKVNLTIGIYFDEAGRIPVMAAAREAEAALLADIGPRPYLPMAGLPAYRDLVQELVFGAGSAAPAVSPRCRRWAGRAR
>LS483424.1|SQH18643.1|3705307_3706000_-|putative-hydrolase
MTNPGDGAAGAVDCATLDHWRPRLAAIAAAAGQDDAAHDLGHLRRVWGAARAMLQAHPEADALVVLAASYLHDLVNLPKNHPERHLASRQAAAAARERLARAGFPAARLDAVAHAIEAHSFSAGIAPRTIEARIVQDADRLDALGPVGLARMFHVGGSLGRALAHPSDPLAAQRALDDSRYTLDHIEAKLARLPHGMQTEAGRRLGEQRLAWLRDFRAAFAAQWGGGQLR
>LS483424.1|SQH18644.1|3706048_3708544_-|Copper-transporting-P-type-ATPase
MNASSLAGAPSTGAISLPIEGMTCASCVGRVERALKAVPGVSDAVVNLATERADVRFAGAPDVGAAVQAVEQAGYAVAASTMELAVSGMTCASCVGRVERALKAVPGVRAASVNLATERAHVEIAGAVAPQALVQAVAAAGYEARPLDPGGAAADAAARRQAAELQGLRRALIVAAVFALPVFVLEMGSHMIPAFHHAVAGSIGVQNSWYIQFVLASIVLFGPGLRFFRKGVPALLRGAPDMNSLVAVGTAAAYAYSVIATFAAGVLPPGTVNVYYEAAAVIVALILLGRYLEARAKGNTSEAIKRLMGLQAKTARVRRDGATVEVPIAQVAAGDVVEVRSGERVPVDGQVIEGTSFVDESMISGEPVPVEKQPGAEIVGGTVNQNGALALRATKVGGDTVLAQIIRMVEQAQGSKLPIQALVDRITMWFVPAVMAVALATFAIWFVFGPDPALTFALVNAVAVLIIACPCAMGLATPTSIMVGTGRAAQLGVLFRKGEALQALKDARVVAVDKTGTLTKGRPELTDLVLAEGFERAAVLGKVAAVEAKSEHPIARAIVDAAQVEGARPGAIEAFESITGYGVAARVDGARVEIGADRYMARLELDVAVFAAEAARLGDEGKTPLYAAIDGHLAAMIAVADPIKNTTAAAIRALHGLGLKVAMITGDNRRTGEAIARQLGIDEVIAEVLPDGKVDAVKRLKAEHGALAYVGDGINDAPALAEADVGIAIGTGTGTDVAIEAADVVLMSGDLGGVPNAIALSQATMANIRQNLFWAFAYNVALIPVAAGVLYPVNGSLLSPVFAAGAMALSSVFVLSNALRLRRFAAPFAAR
>LS483424.1|SQH18645.1|3708643_3709012_-|Protein-of-uncharacterised-function-(DUF861)
MPQHDKSRLVRIDTGPMINPVAGKPSRPIAGDASFRTVTAFEGGQGKVESGVWESTSGSFQSNTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFVTHLA
>LS483424.1|SQH18646.1|3709334_3710225_+|Glyoxalase-like-domain
MPNLNLSLDHTGLIVFKLEDARQAFERLGFTLTPRSMHAGALTPGGPVVPWGSGNHCAMFRNGYFELLGLVEPDKPSTARRMLDRYEGLHIVAMDCESADAMHPQLTAAGVPAPAPATLERDAAFGPANDQTRRARFRNINLDGEAYPEARFIVIEHGTRDVLWQPHLLDHPNGATGLAAMYFAAADLSATLERFQRLLGTPSAHGDAYCFELRRGRFWVMSEAAMREHCPVLADGPVHRVAAACIEVRSLPALQEYLQARQIDYVAAPYLDGAAPSIWVAPAQASCAALQFIQAR

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Crispr_ID: LS483424_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483424_9

4747918-4748054

Orphan

Consensus_repeat	Method
ATGTTTCACGTGAAACAA	PILER-CR

2 spacers

The CRISPR arrays of LS483424_9

>merge|LS483424|9|4747918-4748054|PILER-CR
ATGTTTCACGTGAAACATGCGGCGCCTGTTCCGACCCTCAATAATGCGATTACATGTTCCACGTGAAACAATACTCCTTGATTCGGCATTGAGGCAGACTCACTCAAGCCGTCAGCGTGATGTTTCACGTGAAACAA

>LS483424|9|1|4747918-4748054|PILER-CR
ATGTTTCACGTGAAACAT	GCGGCGCCTGTTCCGACCCTCAATAATGCGATTAC
ATGTTCCACGTGAAACAA	TACTCCTTGATTCGGCATTGAGGCAGACTCACTCAAGCCGTCAGCGTG
ATGTTTCACGTGAAACAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483424.1\|SQH19623.1\|4744370_4745168_-\|Sporulation-initiation-inhibitor-protein-soj	unknown	unknown	gnl\|CDD\|379293
LS483424.1\|SQH19632.1\|4756049_4756730_-\|Transcriptional-regulatory-protein-BasR	unknown	unknown	gnl\|CDD\|185376
LS483424.1\|SQH19617.1\|4738654_4739188_-\|Transcription-antitermination-protein-nusG	unknown	unknown	gnl\|CDD\|180161
LS483424.1\|SQH19616.1\|4738159_4738591_-\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
LS483424.1\|SQH19630.1\|4753474_4754479_-\|Tripartite-tricarboxylate-transporter-family-receptor	unknown	unknown	gnl\|CDD\|225722
LS483424.1\|SQH19620.1\|4741602_4742604_-\|Probable-L-asparaginase	unknown	unknown	gnl\|CDD\|199208
LS483424.1\|SQH19619.1\|4739816_4741007_-\|Elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
LS483424.1\|SQH19628.1\|4751412_4752936_-\|Tripartite-tricarboxylate-transporter-TctA-family	unknown	unknown	gnl\|CDD\|225870
LS483424.1\|SQH19622.1\|4743557_4744364_-\|ribosomal-protein-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LS483424.1\|SQH19633.1\|4757287_4758562_+\|Major-Facilitator-Superfamily	unknown	unknown	gnl\|CDD\|340913
LS483424.1\|SQH19636.1\|4761581_4762556_+\|Glutathione-transport-system-permease-protein-gsiC	unknown	unknown	gnl\|CDD\|223674
LS483424.1\|SQH19625.1\|4745853_4747773_-\|Glucose-inhibited-division-protein-A	unknown	unknown	gnl\|CDD\|235362
LS483424.1\|SQH19629.1\|4752932_4753370_-\|Tripartite-tricarboxylate-transporter-TctB-family	unknown	unknown	gnl\|CDD\|377815
LS483424.1\|SQH19635.1\|4759975_4761562_+\|Glutathione-binding-protein-gsiB-precursor	unknown	unknown	gnl\|CDD\|173863
LS483424.1\|SQH19624.1\|4745164_4745857_-\|Ribosomal-RNA-small-subunit-methyltransferase-G	unknown	unknown	gnl\|CDD\|234637
LS483424.1\|SQH19618.1\|4739197_4739479_-\|Preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|235587
LS483424.1\|SQH19627.1\|4750170_4751337_+\|Methionine-aminotransferase	unknown	unknown	gnl\|CDD\|181642
LS483424.1\|SQH19631.1\|4754599_4756063_-\|Sensor-protein-qseC	unknown	unknown	gnl\|CDD\|182388
LS483424.1\|SQH19621.1\|4742596_4743514_-\|Probable-chromosome-partitioning-protein-parB	unknown	unknown	gnl\|CDD\|275105
LS483424.1\|SQH19634.1\|4758506_4759859_-\|tRNA-modification-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392

Protein	Function_ID	Function_description	E-value
LS483424.1\|SQH19623.1\|4744370_4745168_-\|Sporulation-initiation-inhibitor-protein-soj	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	1.37402e-85
LS483424.1\|SQH19632.1\|4756049_4756730_-\|Transcriptional-regulatory-protein-BasR	gnl\|CDD\|185376	PRK15479, PRK15479, transcriptional regulator TctD.	2.3231e-75
LS483424.1\|SQH19617.1\|4738654_4739188_-\|Transcription-antitermination-protein-nusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	2.39886e-102
LS483424.1\|SQH19616.1\|4738159_4738591_-\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	3.95413e-93
LS483424.1\|SQH19630.1\|4753474_4754479_-\|Tripartite-tricarboxylate-transporter-family-receptor	gnl\|CDD\|225722	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown].	3.55463e-94
LS483424.1\|SQH19620.1\|4741602_4742604_-\|Probable-L-asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	1.9851e-128
LS483424.1\|SQH19619.1\|4739816_4741007_-\|Elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
LS483424.1\|SQH19628.1\|4751412_4752936_-\|Tripartite-tricarboxylate-transporter-TctA-family	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
LS483424.1\|SQH19622.1\|4743557_4744364_-\|ribosomal-protein-alanine-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.34295e-10
LS483424.1\|SQH19633.1\|4757287_4758562_+\|Major-Facilitator-Superfamily	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.56725e-33
LS483424.1\|SQH19636.1\|4761581_4762556_+\|Glutathione-transport-system-permease-protein-gsiC	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.88123e-117
LS483424.1\|SQH19625.1\|4745853_4747773_-\|Glucose-inhibited-division-protein-A	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
LS483424.1\|SQH19629.1\|4752932_4753370_-\|Tripartite-tricarboxylate-transporter-TctB-family	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	2.45077e-07
LS483424.1\|SQH19635.1\|4759975_4761562_+\|Glutathione-binding-protein-gsiB-precursor	gnl\|CDD\|173863	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
LS483424.1\|SQH19624.1\|4745164_4745857_-\|Ribosomal-RNA-small-subunit-methyltransferase-G	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	1.9819e-75
LS483424.1\|SQH19618.1\|4739197_4739479_-\|Preprotein-translocase-subunit-SecE	gnl\|CDD\|235587	PRK05740, secE, preprotein translocase subunit SecE; Reviewed.	1.14356e-31
LS483424.1\|SQH19627.1\|4750170_4751337_+\|Methionine-aminotransferase	gnl\|CDD\|181642	PRK09082, PRK09082, methionine aminotransferase; Validated.	0
LS483424.1\|SQH19631.1\|4754599_4756063_-\|Sensor-protein-qseC	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	9.98232e-53
LS483424.1\|SQH19621.1\|4742596_4743514_-\|Probable-chromosome-partitioning-protein-parB	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	3.93163e-80
LS483424.1\|SQH19634.1\|4758506_4759859_-\|tRNA-modification-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0

>LS483424.1|SQH19625.1|4745853_4747773_-|Glucose-inhibited-division-protein-A
MDFPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMAIATDEAGIQFRILNSSKGPAVRATRVQADRVLYRNAMRARLENQPNLWLFQQAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLIHVGLQNYSGGRAGDPPANSLGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDLDPVPVFSFLGKASMHPRQLPCWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEGLNTHEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKAISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGKEPWVPRRDEAYLGVLVDDLVTRGVTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVERLKSTWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLEDDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHRPETIGQAARVSGVTPAAISLLLIHLKRLHYGSRKQAA
>LS483424.1|SQH19624.1|4745164_4745857_-|Ribosomal-RNA-small-subunit-methyltransferase-G
MSAVPDIPGGPAQRLAQACDALRLPADAGQQQKLLRYIEQMQRWNRTYNLTAIRDPGQMLVQHLFDSLSVVAPLERGLPAAGSGARVKLFDVGSGGGLPGVVLAIMRAHWDVTCVDAVEKKTAFVRQMAGALGLPNLQAAHTRIEQLEPAQCDVVISRAFASLQDFAKLAGRHVREGGTLVAMKGKVPDDEIQALQQHGHWTVERIEPLVVPALDAQRCLIWMRRSQGNI
>LS483424.1|SQH19623.1|4744370_4745168_-|Sporulation-initiation-inhibitor-protein-soj
MKNIPPSKSARVFCIANQKGGVGKTTTAINLAAGLATHKQRVLLVDLDPQGNATMGSGIDKSTLESNLYQVLIGEAGIEQTRVRSESGGYDVLPANRELSGAEIDLVQMDERERQLKAAIDKIAGEYDFVLIDCPPTLSLLTLNGLAAAHGVIIPMQCEYFALEGLSDLVNTIKRVHRNINNELRVIGLLRVMFDPRMTLQQQVSAQLESHFGDKVFTTVVPRNVRLAEAPSYGMPGVVYDRASRGAQAYIAFGAEMIERVKELD
>LS483424.1|SQH19622.1|4743557_4744364_-|ribosomal-protein-alanine-N-acetyltransferase
MPAVLAVLAAHPAPAAGGELARLEEAALNATTVREQMLYEGWLVRWAPSRAKRARCVNVLGLSTRPLDERLAYCTRWYAGHGVPLIVRLTSIGPDFSLDAQLHERGFVAFDRTCVMAAPVVPFTAQAPSGLVFERTTPGRFAQEAGRLRGHDDAATAEHAARLQAAPLENLPLLVRDASGECIAAGLAAFDAELVGLFDIVTAPQRRRQGCGAAVLKYLLEQASHAGARQAYLQVEPQNTAARALYARFGFVDRYTYWYRSMSEATPV
>LS483424.1|SQH19621.1|4742596_4743514_-|Probable-chromosome-partitioning-protein-parB
MATKKPKGLGRGLDALLGADVPAIDNIGKAPAAAPEGPPATLPVSKMRAGKYQPRTRMDEGALNELAESIRTQGIMQPILVRALGADAPGQYEIIAGERRFRAAQLAGLKEVPVLVREVADENAAVMALIENIQREDLNPLEEAHGVRRLLDEFGLTHEQAAQAIGRSRSATSNLLRLLNLAAPVQTMLLAGDVDMGHARALLAVDAATQIQLANQVIAKRLSVREAEKLVARAQKDVDAAPRKKGNGASRDVTRLEEALSDHLGTRVALKVGAREKGQIVIDFHGWEHLNSLLERQGLSGVVDA
>LS483424.1|SQH19620.1|4741602_4742604_-|Probable-L-asparaginase
MPEARLPRIAVLATGGTIAGAQTDAASGAYRAGSYGVGQLLAAVPQLAGLARIGAEQIANVGSQNMSHAVWRQLALRAAALCDDPATDGIVITHGTDTLEETAYFLSLVLPVDKPVVLLGAMRPATALSADGPVNLYNAVALACHPAARGRGPLVVMNEDIHLARHVQKTAASGIAAFASPNAGRAGVMQGGRPVFHARAERQAADALLRPDELPQQAWPRVDIVHACVDLDGELIDFMAGRAQGIVLAGVGDGNATDAALQALQRACARGVAVVRASRTGSGRVGRNIEIDDDACGFIAAGDLSPQKARVLLTLGLCQTRDTARLQALVDSR
>LS483424.1|SQH19619.1|4739816_4741007_-|Elongation-factor-Tu
MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEARGYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDFPGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK
>LS483424.1|SQH19618.1|4739197_4739479_-|Preprotein-translocase-subunit-SecE
MLDAQPMVARIGVFVGGLVVAALLAWFSEPGRRTLSFAGESYNEVKRVSWPTRKETIQMTGIVFAFVAVMGLLMWVLDKGIEWVLYGLLLGWK
>LS483424.1|SQH19617.1|4738654_4739188_-|Transcription-antitermination-protein-nusG
MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRIFPGYVLVEMDLTDETWHLVKNTNRVTGFLGGLGNRPTPISEREVEKILNQMEEGVEKPRPKILFEVGEMVRVKEGPLADFNGNVEEVNYEKSKVRVSVTIFGRATPVELDFSQVEKT
>LS483424.1|SQH19616.1|4738159_4738591_-|50S-ribosomal-protein-L11
MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAKTQGMEPGLPIPVVITAFADKSFTFIMKTPPATVLIKKASGVQKGSAKPHTDKVGTLTRAQAEEIAKTKQPDLTAADLDAAVRTIAGSARSMGITVEGV
>LS483424.1|SQH19627.1|4750170_4751337_+|Methionine-aminotransferase
MIRSKLPDVGTTIFTVMSRLAIEHKAINLGQGFPDFDPDPELCALVGKAMAAGHNQYPYMPGVAPLREAIAAKVKTLYGHAYDPETEITVTSGATEALMATVLAAVGPGDEVVVIEPCYDSYLPAIRLAGGTAVPVPLRAPTRDDPYYRIDWQRVRDAIGARTRLLMLNFPHNPTGAVLDESDLDALESIVRETGVLLLSDEVYEHIVFDGKPHASLSRRPLLAEHAFVIASFGKTYHTTGWKVGYCCAPRQLSAELRKVHQFMVFTVSSPMQFALAEYMANPKPYLDLPAFYQAKRDRLAAGLANTRFRPLPSPGTFFMLADYSEITKHAEADFARHLTIDHGVTVIPVSAFYQNPAAPESNHHLVRFCFAKQDATLDAAIERLAHV
>LS483424.1|SQH19628.1|4751412_4752936_-|Tripartite-tricarboxylate-transporter-TctA-family
MSGILDHLAIGFGVAFSLTNVLVAAIGSFFGTMVGVLPGLGPINGVAMLIPIAFAMNLPPETALILLAAVYVGAEYGGRITSILLNVPGEASAIMTTLDGYPLARQGLANVALSLSAWSAFFGAIVSVTGIILLAPLLAKWALAFGPAEYFVLMVFAFCCLTSLLGKQPVKGVLAAMIGLGISVVGVDSNSGVYRYIFDSVHLSDGIDFVVVVIALFAVSEMLEMLEKVVAGHSIEVKPSGRKLFNLKELSFTWWSVVRSSLVGFGVGVLPGAGASVAAAVAYSQEKRIIESKDPDAKFGKGDMRGLVAPESAATASAIGSFVPMLTLGVPGSGTTAVMMGALTLYNITPGPVLFDSKPELVWGLIASLFIANVLLFIMNVPMVRVFSKVLAVPAWMMVPGILCISYIGVYAINAGTFDLLMVVAIGALGYFLRKFGVPMAPLVLGVVLGDMMEQNLRRALSITNGDPVVLYSSPVSIGLWIAAAVVVIVPQLMRRLSARRRQAAQS
>LS483424.1|SQH19629.1|4752932_4753370_-|Tripartite-tricarboxylate-transporter-TctB-family
MNDRMLGVFALILAAFMTWAGWDIEAPFAYEPVGPRAFPMLVALIIGLCGLRLAYKGGHQVETNSAGANARIALMVAYAAAYAFLFQWLGFVIATALMTVAVGRLFGGNWIKCAIGGLIMGVLFFLLFDKVLDVVLPAGLLEGLL
>LS483424.1|SQH19630.1|4753474_4754479_-|Tripartite-tricarboxylate-transporter-family-receptor
MHTLAKFRATAAALAGLCALFIGNAAHAASDEPRRPECIAPAQPGGGFDLTCRLATEGLKQSGALKAPMRIVYMPGGIGAVAYNNIVAQHPGEAGTIVAFSGGSLLNLAQGKFGKYSVDDVRWLAGIGADYGVAVVRNDSPYTDLKGLMEAFKQDPTKIVLGAGGTVGSQDWMKAALTAKAAGVDFKKMRFVAFEGGGEAVTALRGGHIQAYMGDAAEAFTMLEGGAPIRVLAVFNSERLPGKLNNVPTAKEQGYDIVWPIIRGFYVGPKVSDKDYQFWVDAFDKTMTSPEYAKLREQQGLFPFSKTGKDLDDYVKQQVKNYAELADSFGLIKK
>LS483424.1|SQH19631.1|4754599_4756063_-|Sensor-protein-qseC
MTTRRQEKTRHRTLKTVLLWWLIPALVFVMTGALWLSNQQLRNQVDIAYDRSLSGALRSIDHNISTASGGLSLEQPYLMLEFFELTANGNVYYRVATEDGLAEIGNPQLPLPPQPLVSGQPQFFYAEYLGQPVRVAALARPMDPPLYNDKGGRIIVQVAESLETRQDFLHRALVRSVERDLAVVMISVLVVIWSVFMALRPLERLREEVASRSADDLSPVSASEMPGEVQPLIHAVNLHMARFTALARVQRQFLDDASHQLRTPLSVLRTQTAYALRETDPQEVRTALLAMQDGLDRAVRTTNQMLALARAKDASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALSNLVDNAIRYTARGSEVTVKVHAEGGHAWLVVEDNGPGMSAEDIARASVRFRRGAAGKNKSGAGLGLAIVRTIIEIHGGQLVLENRQPQPGLRAALVFSLGFKGNAALPHEIVVI
>LS483424.1|SQH19632.1|4756049_4756730_-|Transcriptional-regulatory-protein-BasR
MRILLIEDEAELARWLSRSLARHAGFVVEWADDGLLAERRLAVEEFDAIILDLGLPGMDGHTLLTRIRARDDRTPVLVLTARDSLAERVGTLHQGADDFLPKPFVLEELEARLTALIRRSRGREHPRLTLGDLALDTASQRFTVKGQPLALSPREHAVLRALIQRSGEPLNKQQILDRIQSSDSDVNLEAIEVLVHRLRKKLADTGVQIVTMRGMGYCLENAVDNP
>LS483424.1|SQH19633.1|4757287_4758562_+|Major-Facilitator-Superfamily
MTRHSTPFAGRQVLAASFVMAIYGWGMGFYGPPVFLHAVVERTGWPLQWVAGMVTLHFVAGALAVANLRRLYRLAGIPMVTFCGALGSALGTFGWAVAATPWQLAIAALVSGASWAALGAAAINALIEPWFVVRRPAALGMAYNGASVGGIVFSPLWALLIQAWGFAWAAGVVGASMVLVIAVLASLVFTRTPANTGQAPDGEAVAPRPAANPAPPARPAGRLREDRRFVTLAAAMSLGLFAQMGLVAHLYSLLVPTLGPGTAGLAMGAATGCAIAGRTIVGRIAGAGSDRRLLASHAYAIQALGALLLLAAGDTPALVWLGLLLFGSGIGNATSLPPLIAQNEFDPASVRRVVPLIVALSQAAYAFAPAVFGMLRGVSDAASAPWLFVAAAALQAAAIACLLAGRATCRCRNSKRSRPASRRW
>LS483424.1|SQH19634.1|4758506_4759859_-|tRNA-modification-GTPase-MnmE
MSLYAPIAAIATAPGRGGIGVVRISGPDLAELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPHSYTGEDVLELQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVADLIDASSEAAARGAMASLSGEFSQRVNDLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALAGDDIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPDHLDAQIVRRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQRLLQLAGWNPGAESPWLARERHLHALQQAAQHLEIATEHAREDDRVLDLFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK
>LS483424.1|SQH19635.1|4759975_4761562_+|Glutathione-binding-protein-gsiB-precursor
MISRLSRVVTCGSVIVALALGGASAALARDLVVALKTEPSSMDPQYHALTPNTQISQTIFDPIVRVDEQLKPQPTLAESWTVDGKVWMFKLRPDVKFSDGTPFTAEDVVFTYDRIPKVPNSPSPFTLYLGAVAKTEAVDPLTVRITTKDVTPLLLVNLAQLPIMSKKAASGPAPEGKTTTELNSGNGLIGTGPYKFVSWKRGAEFVLARNENYWGKPPAWDKVTYRPMTNAAARVAALLAGDVDMIEDPPTDDLPKLKADKKLYVEETPSVRVVYLALDQYAEPSPGVQGTDKNPMKDKRVREALSLALNRDAIVDRVMGGVAKPAGNLLPYPMFGSSKEHSQAPKADVEKAKALLKEAGYPNGFSITLGSPSGRYVNDAKVAQAIASMWTRIGVKTSVDSMAPPVFFKNRDSYAFSAYLAGWSVTSGEMSNALTSLLVTRNPEAGLGTTNRSRYSNPAMDELVKQASSTMDDAKRAELLQKASNLAMDDYAMLPVHFELSVWAMKNDIRYTGRPDQTTLVQYATVKK
>LS483424.1|SQH19636.1|4761581_4762556_+|Glutathione-transport-system-permease-protein-gsiC
MLATIIRRLLQTVVVMLVMSALVFAGIYMVGDPVSMLASPEATEAQRSAIRVSLGLDQPLWKQYLIFMGQAVRGDFGNSFLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTLGWLPASGRGQTVSVAGLSLSVLTLDGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLKNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDPRVRLDSRQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483424_7	7.2\|3442945\|19\|LS483424\|CRISPRCasFinder	3442945-3442963	19	LS483424.1	3442969-3442987	0	1.0
LS483424_7	7.2\|3442945\|19\|LS483424\|CRISPRCasFinder	3442945-3442963	19	LS483424.1	3442981-3442999	0	1.0
LS483424_7	7.2\|3442945\|19\|LS483424\|CRISPRCasFinder	3442945-3442963	19	LS483424.1	2373115-2373133	2	0.895
LS483424_7	7.2\|3442945\|19\|LS483424\|CRISPRCasFinder	3442945-3442963	19	LS483424.1	2683493-2683511	2	0.895
LS483424_7	7.2\|3442945\|19\|LS483424\|CRISPRCasFinder	3442945-3442963	19	LS483424.1	2741068-2741086	2	0.895

1. spacer 7.2|3442945|19|LS483424|CRISPRCasFinder matches to position: 3442969-3442987, mismatch: 0, identity: 1.0

ttcaggctcgggttcaggc	CRISPR spacer
ttcaggctcgggttcaggc	Protospacer
*******************

2. spacer 7.2|3442945|19|LS483424|CRISPRCasFinder matches to position: 3442981-3442999, mismatch: 0, identity: 1.0

ttcaggctcgggttcaggc	CRISPR spacer
ttcaggctcgggttcaggc	Protospacer
*******************

3. spacer 7.2|3442945|19|LS483424|CRISPRCasFinder matches to position: 2373115-2373133, mismatch: 2, identity: 0.895

ttcaggctcgggttcaggc	CRISPR spacer
ttcaggctcaggctcaggc	Protospacer
*********.**.******

4. spacer 7.2|3442945|19|LS483424|CRISPRCasFinder matches to position: 2683493-2683511, mismatch: 2, identity: 0.895

ttcaggctcgggttcaggc	CRISPR spacer
ttcaggcacgggatcaggc	Protospacer
******* **** ******

5. spacer 7.2|3442945|19|LS483424|CRISPRCasFinder matches to position: 2741068-2741086, mismatch: 2, identity: 0.895

ttcaggctcgggttcaggc	CRISPR spacer
ttcaggcgcggattcaggc	Protospacer
******* ***.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NC_022049	Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence	376987-377015	3	0.897
LS483424_5	5.1\|2848397\|28\|LS483424\|CRISPRCasFinder	2848397-2848424	28	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	479490-479517	6	0.786
LS483424_5	5.1\|2848397\|28\|LS483424\|CRISPRCasFinder	2848397-2848424	28	NZ_CP045303	Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence	2432-2459	6	0.786
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NZ_AP014706	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence	210180-210208	6	0.793
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1136080-1136108	7	0.759
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	537092-537120	7	0.759
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	812700-812728	7	0.759
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	60621-60649	7	0.759
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	323975-324003	7	0.759
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NZ_CP015007	Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence	18398-18426	8	0.724
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	396287-396315	8	0.724
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	87037-87065	9	0.69
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	48029-48057	9	0.69
LS483424_6	6.1\|3160052\|29\|LS483424\|CRISPRCasFinder	3160052-3160080	29	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	210011-210039	9	0.69

1. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 3, identity: 0.897

gccccgcaccctgcgccacgc--ccattcgg	CRISPR spacer
gccccgcaccctgcgccacgccgccaatc--	Protospacer
*********************  *** **

2. spacer 5.1|2848397|28|LS483424|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 6, identity: 0.786

ataccgtcttggcaggccagcgggacgg	CRISPR spacer
cgaccgtcttggcgggcgagcgggacaa	Protospacer
  ***********.*** ********..

3. spacer 5.1|2848397|28|LS483424|CRISPRCasFinder matches to NZ_CP045303 (Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

ataccgtcttggcaggccagcgggacgg	CRISPR spacer
gcccagtcctggcaggccagcgggatgg	Protospacer
.. * ***.****************.**

4. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 6, identity: 0.793

gccccgcaccctgcgccacgcccattcgg-	CRISPR spacer
cgcccgcaccctgcgccaggccc-tccgcc	Protospacer
  **************** **** *.**

5. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 7, identity: 0.759

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
gccccgcgccctgcgtcacgcccagcacc	Protospacer
*******.*******.******** .

6. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
tggccgcacccagcgccacgcccatggcg	Protospacer
   ******** *************   *

7. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 7, identity: 0.759

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
cgtccgcaccctgcgccacggccagcccg	Protospacer
  .***************** *** .* *

8. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 7, identity: 0.759

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
ccgccgcaccctgcgccccgaccatttca	Protospacer
 * ************** ** *****. .

9. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 7, identity: 0.759

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
tgcccgcatcctgcgcaacgcccatctcg	Protospacer
  ******.******* ********.. *

10. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NZ_CP015007 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence) position: , mismatch: 8, identity: 0.724

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
cgtacgcgccctgcgccacgcccatgtag	Protospacer
  . ***.***************** ..*

11. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 8, identity: 0.724

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
tccccgcaccctgtgccacgccacgacca	Protospacer
 ************.********    * .

12. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 9, identity: 0.69

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
caaccgcaccctgcgcctcgcccacctca	Protospacer
   ************** ******... .

13. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NC_005838 (Thermus thermophilus HB27 plasmid pTT27, complete sequence) position: , mismatch: 9, identity: 0.69

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
caaccgcaccctgcgcctcgcccacctca	Protospacer
   ************** ******... .

14. spacer 6.1|3160052|29|LS483424|CRISPRCasFinder matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 9, identity: 0.69

gccccgcaccctgcgccacgcccattcgg	CRISPR spacer
caaccgcaccctgcgcctcgcccacctca	Protospacer
   ************** ******... .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1443659 : 1451722

Moraxella_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH16504.1\|1443659_1444244_+	IMPACT family member yigZ	A0A1X9I5T8	Streptococcus_phage	2.1e-16	46.8
SQH16505.1\|1444262_1444646_-	Thioredoxin-2	V9SJ74	Achromobacter_phage	1.8e-08	25.8
SQH16506.1\|1444781_1445807_-	Alkanal monooxygenase alpha chain	NA	NA	NA	NA
SQH16507.1\|1446012_1447305_-	Probable adenine permease PurP	A0A0R6PHV4	Moraxella_phage	1.9e-65	35.8
SQH16508.1\|1447439_1448480_+	t(6)A37 threonylcarbamoyladenosine biosynthesis protein	A0A0R6PI74	Moraxella_phage	7.9e-91	51.3
SQH16509.1\|1448524_1449160_-	G3P acyltransferase	NA	NA	NA	NA
SQH16510.1\|1449297_1450056_+	5'-nucleotidase surE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	51.2
SQH16511.1\|1450040_1450820_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-32	46.9
SQH16512.1\|1450837_1451722_+	Murein hydrolase activator NlpD precursor	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483424

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection