CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483422	Providencia heimbachae strain NCTC12003 genome assembly, chromosome: 1	3 crisprs	WYL,cas3,DEDDh,csa3,DinG	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483422_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483422_1

322772-322889

Orphan

Consensus_repeat	Method
CTTGCTACAAACTCGAATTATTTAGAATATTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483422_1

>merge|LS483422|1|322772-322889|CRISPRCasFinder
CTTGCTACAAACTCGAATTATTTAGAATATTAAAATAGTTGTCATACTTCGAGCTGTAGCGGTGTTGGCTTCACTCTACGAGCTACTCTTGCTACAACTCGAATTATTTAGAATATTA

>LS483422|1|1|322772-322889|CRISPRCasFinder
CTTGCTACAAACTCGAATTATTTAGAATATTA	AAATAGTTGTCATACTTCGAGCTGTAGCGGTGTTGGCTTCACTCTACGAGCTAC
TCTTGCTACAACTCGAATTATTTAGAATATTA

Protein	Signature genes	Signature genes Name	Protein_function
LS483422.1\|SQH11625.1\|324184_324937_+\|Inner-membrane-amino-acid-ABC-transporter-permease-protein-yecS	unknown	unknown	gnl\|CDD\|223836
LS483422.1\|SQH11624.1\|323137_324016_+\|Sulfate-starvation-induced-protein-7	unknown	unknown	gnl\|CDD\|270407
LS483422.1\|SQH11631.1\|331277_332159_+\|HTH-type-transcriptional-activator-AmpR	unknown	unknown	gnl\|CDD\|176173
LS483422.1\|SQH11633.1\|332581_332812_-\|Helix-turn-helix-domain	unknown	unknown	gnl\|CDD\|238045
LS483422.1\|SQH11623.1\|321962_322676_+\|Phosphate-transport-system-protein-phoU	unknown	unknown	gnl\|CDD\|182974
LS483422.1\|SQH11626.1\|324938_325691_+\|Glutamate/aspartate-transport-system-permease-protein-gltK	unknown	unknown	gnl\|CDD\|223836
LS483422.1\|SQH11621.1\|320253_321135_+\|Phosphate-transport-system-permease-protein-pstA	unknown	unknown	gnl\|CDD\|183065
LS483422.1\|SQH11629.1\|328219_329593_+\|Oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
LS483422.1\|SQH11614.1\|311902_312133_-\|Ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|181949
LS483422.1\|SQH11630.1\|329950_331093_-\|Beta-lactamase	unknown	unknown	gnl\|CDD\|236894
LS483422.1\|SQH11628.1\|327473_327992_+\|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl\|CDD\|367878
LS483422.1\|SQH11615.1\|312514_314845_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|225094
LS483422.1\|SQH11619.1\|318136_319180_+\|Phosphate-binding-protein-pstS-precursor	unknown	unknown	gnl\|CDD\|182837
LS483422.1\|SQH11627.1\|325881_327213_+\|Probable-adenine-permease-PurP	unknown	unknown	gnl\|CDD\|225161
LS483422.1\|SQH11616.1\|315014_315500_+\|Transcript-cleavage-factor-greB	unknown	unknown	gnl\|CDD\|179345
LS483422.1\|SQH11620.1\|319280_320252_+\|Phosphate-transport-system-permease-protein-pstC	unknown	unknown	gnl\|CDD\|183070
LS483422.1\|SQH11617.1\|315617_316337_+\|Transcriptional-regulatory-protein-OmpR	unknown	unknown	gnl\|CDD\|181883
LS483422.1\|SQH11618.1\|316333_317665_+\|Osmolarity-sensor-protein-EnvZ	unknown	unknown	gnl\|CDD\|236531
LS483422.1\|SQH11622.1\|321172_321949_+\|Phosphate-import-ATP-binding-protein-PstB	unknown	unknown	gnl\|CDD\|182692
LS483422.1\|SQH11632.1\|332229_332517_-\|anaerobic-benzoate-catabolism-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045

Protein	Function_ID	Function_description	E-value
LS483422.1\|SQH11625.1\|324184_324937_+\|Inner-membrane-amino-acid-ABC-transporter-permease-protein-yecS	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.83497e-60
LS483422.1\|SQH11624.1\|323137_324016_+\|Sulfate-starvation-induced-protein-7	gnl\|CDD\|270407	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.76276e-101
LS483422.1\|SQH11631.1\|331277_332159_+\|HTH-type-transcriptional-activator-AmpR	gnl\|CDD\|176173	cd08484, PBP2_LTTR_beta_lactamase, The C-terminal substrate-domain of LysR-type transcriptional regulators for beta-lactamase genes, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators, BlaA and AmpR, that are involved in control of the expression of beta-lactamase genes. Beta-lactamases are responsible for bacterial resistance to beta-lactam antibiotics such as penicillins. BlaA (a constitutive class A penicillinase) belongs to the LysR family of transcriptional regulators, while BlaB (an inducible class C cephalosporinase or AmpC) can be referred to as a penicillin-binding protein, but it does not act as a beta-lactamase. AmpR regulates the expression of beta-lactamases in many enterobacterial strains and many other gram-negative bacilli. In contrast to BlaA, AmpR acts an activator only in the presence of the beta-lactam inducer. In the absence of the inducer, AmpR acts as a repressor. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.66277e-97
LS483422.1\|SQH11633.1\|332581_332812_-\|Helix-turn-helix-domain	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.1049e-09
LS483422.1\|SQH11623.1\|321962_322676_+\|Phosphate-transport-system-protein-phoU	gnl\|CDD\|182974	PRK11115, PRK11115, phosphate signaling complex protein PhoU.	7.10814e-168
LS483422.1\|SQH11626.1\|324938_325691_+\|Glutamate/aspartate-transport-system-permease-protein-gltK	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	5.11593e-60
LS483422.1\|SQH11621.1\|320253_321135_+\|Phosphate-transport-system-permease-protein-pstA	gnl\|CDD\|183065	PRK11268, pstA, phosphate ABC transporter permease PstA.	0
LS483422.1\|SQH11629.1\|328219_329593_+\|Oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
LS483422.1\|SQH11614.1\|311902_312133_-\|Ferrous-iron-transport-protein-A	gnl\|CDD\|181949	PRK09555, feoA, ferrous iron transporter A.	5.36539e-40
LS483422.1\|SQH11630.1\|329950_331093_-\|Beta-lactamase	gnl\|CDD\|236894	PRK11289, ampC, beta-lactamase/D-alanine carboxypeptidase; Provisional.	0
LS483422.1\|SQH11628.1\|327473_327992_+\|Der-GTPase-activating-protein-YihI	gnl\|CDD\|367878	pfam04220, YihI, Der GTPase activator (YihI). YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI.	1.29875e-52
LS483422.1\|SQH11615.1\|312514_314845_-\|30S-ribosomal-protein-S1	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
LS483422.1\|SQH11619.1\|318136_319180_+\|Phosphate-binding-protein-pstS-precursor	gnl\|CDD\|182837	PRK10918, PRK10918, phosphate ABC transporter substrate-binding protein PstS.	0
LS483422.1\|SQH11627.1\|325881_327213_+\|Probable-adenine-permease-PurP	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.76682e-169
LS483422.1\|SQH11616.1\|315014_315500_+\|Transcript-cleavage-factor-greB	gnl\|CDD\|179345	PRK01885, greB, transcription elongation factor GreB; Reviewed.	1.29778e-94
LS483422.1\|SQH11620.1\|319280_320252_+\|Phosphate-transport-system-permease-protein-pstC	gnl\|CDD\|183070	PRK11275, pstC, phosphate ABC transporter permease PstC.	0
LS483422.1\|SQH11617.1\|315617_316337_+\|Transcriptional-regulatory-protein-OmpR	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	6.37666e-176
LS483422.1\|SQH11618.1\|316333_317665_+\|Osmolarity-sensor-protein-EnvZ	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	0
LS483422.1\|SQH11622.1\|321172_321949_+\|Phosphate-import-ATP-binding-protein-PstB	gnl\|CDD\|182692	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB.	0
LS483422.1\|SQH11632.1\|332229_332517_-\|anaerobic-benzoate-catabolism-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.95803e-15

>LS483422.1|SQH11623.1|321962_322676_+|Phosphate-transport-system-protein-phoU
MDTLNHNKHISGQFNAELEHIHTELMTMGGLVEEQLTKAITAMHNQDEALAREVIENDHKVNMMEVAIDEECMKIIAKRQPTASDLRLIMAISKTIAELERIGDVADKICQTALEKFSHQHQPLLVSLESLGRHTVQMLHDVLDAFARMDVDEAVRIYREDEKVDQEYEGIVRQLMTYMMEDPRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVKGQDFRHVGRDDLEKMLTKK
>LS483422.1|SQH11622.1|321172_321949_+|Phosphate-import-ATP-binding-protein-PstB
MIKANEITNSKIQVRDLNFYYGKFNALKDISLDIEKNKVTAFIGPSGCGKSTLLRTFNKMYELYGEQRAEGEILLDGQNILTDKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRVEMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELISELKSEYTVVIVTHNMQQAARCSDYTAFMYLGELIEFNHTDKMFTAPEMKQTEDYITGRYG
>LS483422.1|SQH11621.1|320253_321135_+|Phosphate-transport-system-permease-protein-pstA
MSTYQPVAVNQKDRARRQAWRRQINRMALIISMLAMAFGLFWLVWILFSTVTKGIDGMSLNLFTEMTPPPNTEGGGLANAIVGSGLLILWATVIGTPLGILAGIYLAEYGRKSWLASVTRFINDILLSAPSIVVGLFVYTIVVAQMQHFSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMILSITLKASVSGIITGILLAIARIAGETAPLLFTSLSNQFWSTDMSEPIANLPVTIFKFAMSPFSEWQDLAWAGVLLITLCVLIINIIARVVFAQKKH
>LS483422.1|SQH11620.1|319280_320252_+|Phosphate-transport-system-permease-protein-pstC
MRKKRMAEKTTAFKAPSKSGDVIFGALVKIAALITLLMLGGIIISLIFASWPSMQKFGFSFLWTKEWDAPAEQFGALVPIYGTIVTSLIALIIAVPVSFGIALFLTELAPNWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFAEYFQEPVGNVMSSIPIVGELFSGPAFGIGILAAGIILAIMIIPYIASVMRDVFEQTPVMMKESAYGIGCTTWEVIWNIVLPYTRNGVIGGVMLGLGRALGETMAVTFVIGNTYQLDSPSLFMPGNSITSALANEFAEAESGLHTSALMELGLILFVITFIVLAISKLMVMRLAKNEGR
>LS483422.1|SQH11619.1|318136_319180_+|Phosphate-binding-protein-pstS-precursor
MKMMRTTLTSVMAATLSLTAMSSFAATSLTGAGATFPAPVYAKWADSYQKETGNKVNYQGIGSSGGVKQINAKTVDFGASDAPLTDEKLKQDGLFQFPTVIGGVVLAVNVKGIESGQLTLDGKILGDIYLGKITKWNDPAIVKMNPNVSLPDQTIAVVRRSDGSGTTFVFTSYLAKVSTSWKDEIGAGSTVNWPKNSVGGKGNDGVAAFVQRLPGSIGYVEYAYAKQNNLAYTKLISADGEAVSPTGASFSAAAKKVDWSQSFAQDLTNRDGANAWPITSTTFILLHKEQANAEKGKTVLDFFNWAYDKGGKQAEDLDYAVLPEEVVTAVRAAWKTEVKDSQGKALF
>LS483422.1|SQH11618.1|316333_317665_+|Osmolarity-sensor-protein-EnvZ
MKRLRFSRRSTFSRSLFLFVALLFASLVTSYMVVLNFVVMPSLQQFNKVLAYEVRTLMTEKMVLQDGTSVRVSPALRKKIYNELGITFYAQSAAMEEGLNWAKEYDFLSNHMSEYLGGKASVHLELGRDYPILWLTSYLAPDIWVRVPLTEIGQNQFSLVFRYTLTIFLTIFAGVWLYIRYQNKPLLELEYHAGEVGKGISLPPMQEKGATEVRAAIRSFNHMATGIKTLENDRTVLMAGVSHDLRTPLTRIRLATEMMSPEDSYLAESINKDIEECDAIIGQFMSFLKTGQEMDMEFCDLNAILMEAVNSEINVIGEIETALEPGSMIVNGNPLAIKRAITNMIVNAYRYGNGWIKVSSGKSEDYVWFQVEDDGAGIKPEDIQRLFQPFVQGEKARSNTGTGLGLAIIRRIIDAHEGNIEIRKSERGGFAIRALLPLKEKED
>LS483422.1|SQH11617.1|315617_316337_+|Transcriptional-regulatory-protein-OmpR
MQESYKVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDGLSICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANELPGAPSQDDAVITFGKFKLNLSTREMFQGDENMPLTSGEFAVLKVLVSYPREPLSRDKLMSLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA
>LS483422.1|SQH11616.1|315014_315500_+|Transcript-cleavage-factor-greB
MAKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRIRFLSKRLDQLRIIEPDPRQEGRVFFGAWVKLEDENENIRIFRLVGADEFDPAKQWISIDSPVARALIGKQVDDEITVITPGGEVTYFVLDISYKPLTN
>LS483422.1|SQH11615.1|312514_314845_-|30S-ribosomal-protein-S1
MNETLSQIIAAELHAQPKQVFSAITLLDEGNTVPFIARYRKEVTGGLDDTQLRQLESRLGYLRELNDRKQTILKSIEEQGKLTPELSSAINTTLNKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADTLWNDPNQSPDELAQTFIDADKGVADTKAALDGARYILMERFAEDALLLAKVRDYLWKNAHLVSVVADGKQAEGVKFSDYFEHQEPVAQVPSHRALAMFRGRNEGILQLSLNCDPQFDEPPKESYCEEIITRHLDARLNNAPADQWRKAVISWTWRVKILLHLETEIMSTLREKAEEEAINVFARNLSDLLMAAPAGMRATMGLDPGLRTGVKVAVVDSTSKVIATDTIYPHTGQAAKAAAIVAALCQKHNVELVAIGNGTASRETERFFAEVQNQYPDVTAQKVIVSEAGASVYSASELAALEFPTLDVTLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNSVGVDLNTASVPLLTRVAGLSKMIAQNVVDWRDENGKFNDRKQLLKVARLGPKAFEQCAGFLRITNGDNPLDASTVHPEAYPIVEKILEVVRQPLKEIMGNSQVLNGLSPREFTTEKFGVPTVTDIIKELEKPGHDPRPEFKTATFADGVETMNDLLPGMVLEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNSYVEDPHKVVKAGDIVKVKVMDVDIARKRIALTMRLDEQPGDTNSAPRSANKGQDKNTRKAPAPRNQPRQNNATSGNSAMGDALSAALGKKR
>LS483422.1|SQH11614.1|311902_312133_-|Ferrous-iron-transport-protein-A
MAILPQCSYKIIGFSPEISPAYRQKLLSLGLLPGSVFKVVRLAPFGDPVQIETHRVSLVLRKKDLALLNLDEAPTA
>LS483422.1|SQH11624.1|323137_324016_+|Sulfate-starvation-induced-protein-7
MVDLQKFTVLGCSMKARILTTVLLTGLALTANIASADKLDDIKKAGVVRISVFDSNPPFGFIDPQTKKLAGYDIDIAQAIADDLGVKLELRPTNPANRIPLLSSGKVDLIGANFTITDERAKQVDFTIPDFATGQKFIARKGVLKTPDDIKPLRIGADKGTVQEVTLRERFPDTKVISYDDTPQAFAALRNGNVQAITQDDAKLVGLLGNLPEKVKVDFEISPFSLTQEYQALATTKGETRLVESVNETLLKLEKDGKAEVIYNRWFGPETKAAQPRGDFKFAPLSEQAPQS
>LS483422.1|SQH11625.1|324184_324937_+|Inner-membrane-amino-acid-ABC-transporter-permease-protein-yecS
MFETFFSGDFWSTHLLAPQYLEWFGYGFLLTVWISVCTIIAATLLGFIVASAKDSQIAPLRWFVSLYISIFRNTPLLVQLFFWYFASGEILPSSAMVWLNTPHEVTFLGLTVCWPSFEFLAGFIGLTLYTVPFIAEELRAGIRGVRQGQKYAAFALGLTGWQAMRLVVLPQAVKIAMPPLLGQYMNVVKNSSLTMAIGVAELSYVSRQVDSQTLQTFTAFGLATVLYIAIIALMEGWGQWHQQRNLAQGA
>LS483422.1|SQH11626.1|324938_325691_+|Glutamate/aspartate-transport-system-permease-protein-gltK
MDFSVIEQNWQYLLFGAYPDGPLEGAALTLVISVLAGAASIVLGTLGGVALAMLRGFWMNLFAAVLGFFRAIPVIMLIFWTYFLLPMLLGTEIPGITTVVCALALITSAYLAHAVKAGILAIGQGQWQAGLSLGFNRWQVLWNIVLPQALRMMVPSFINQWIALIKDTSLAYIVGVAELSFLATQVNNREMVYPLEVFLFVAFIYFVMCLTIEIAANTVAKKLTNQNALHKQTAKRKRLFWRRQKLLALS
>LS483422.1|SQH11627.1|325881_327213_+|Probable-adenine-permease-PurP
MSDQSSDSTQQGLFQRFFKLKEHGTTARTEVVAGCTTFLTMVYIVFVNPQILSVAGMDIQAVFVTTCLIAAFGSILMGLLANLPIAVAPAMGLNAFFAFVVVGAMGYSWQVAMGAVFWGAVGLFILTLFRIRYWIIANIPLSLRVGITSGIGLFIAMMGLKNSGIIVANPDTLVSIGNLTHHNVWLGALGFFIIAILAARNIHAAVLVSIAVTTLIGLALGDVKFSGIFSLPPSVTSVVGQVDFAGSFDLALSGVIFAFMLVNLFDSSGTMIGVTDKAGITNERGTFPRMKQALYVDSLSSVAGSAMGTSSVTAYIESSAGVSVGGRTGLTAVVVGVLFLLTMFISPLAGMVPAYATAGALIYVGVLMTSSLTRVKWDDLTESVPAFITAVMMPFSFSITEGIALGFIAYCAMKVGTGRWRDLSLCVILVAALFILKMVLVDS
>LS483422.1|SQH11628.1|327473_327992_+|Der-GTPase-activating-protein-YihI
MNSPKKPTSKTKKKYRKTTAELNAEGRERKRDTKHRGHKSGSRYQDKSSNGQNNGQNNVADPRLGSKKPVPLILDENQIQAQPVSKKQPTVKEKLTPERELELLESDDRLDALLARLEDGETITAKEQEYIDTCLDRIDELMKQLGIEFSDEDESEEEDEKLDDIMRILKSK
>LS483422.1|SQH11629.1|328219_329593_+|Oxygen-independent-coproporphyrinogen-III-oxidase
MSEQNIVWDLSLIQKYNYSGPRYTSYPTALEFNQDYDEKAFISATQRYPDRPLSLYVHIPFCHKLCYFCGCNKLVTRQKHKADEYLKVIEKEIVQRAELLKNRTVTQMHWGGGTPTYLDKAQVSHLVGLLKQHFHFADDVEMSIEIDPREIELDMIDHLRHEGFNRLSMGVQDFNKEVQVLVNREQDEDFIFALINRAKETGFTSTSIDLIYGLPKQTPESFAFTLKKVAELSPDRLSVFNYAHLPNLFAAQRKIKDEDLPSAEQKLDILQETIATLTSGGYQFIGMDHFARPQDELAVAQREGVLHRNFQGYTTQGDCDLLGLGVSAISMLGDNYAQNQKDLKTYYAQVEEQGHALWRGLVLTDDDCLRRDVIKLLICNFQLNYSQIEEMYPIDFKTHFAEDLALLKPMADDGLVEINDVGIKVTPQGRLLIRNICMCFDVYLRNQMRQRQFSRVI
>LS483422.1|SQH11630.1|329950_331093_-|Beta-lactamase
MRNIFRQGQLFIALSLVFTSISASALTQIEVDDIIKPLMKQQQIPGMSVAISVDGKHYIYHYGVQSKQTNVPITNNTLYEIGSLSKTFTATLASYAQGKGRLDFAQTVSHYLPELKNTVFDKVTVMNLATHTSGLSIFVPDAVTNSAELMHYYQQWKPENEIGQYRSYSNLGVGLLGIVAAKQLNMPFSQAMEKMMLPALGLKHTYINVPDAQQKYYAQGYNKKDQPVRVTPQILDAEAYGLKSTAKDLIRFLDINMQVTKVAQPWQDAVEDTHTGVYLTDSFVQDMMWESYPWPVSLAQLQQGNRDDMALKPQKVEIIQPILPPETRAYYNKTGSTNGFAAYAVFIPENQVGIVILSNKWYPIPERISTAYQLIEKIDH
>LS483422.1|SQH11631.1|331277_332159_+|HTH-type-transcriptional-activator-AmpR
MSGSSRHRLPLNALRAFEASARHLSFTQAGVELNVTQAAVSQQVRLLEDQLGLELFIRLSRGLALTDEGLALLPVLSHSFDKIEALLQQFEDGHYHEVLSISVVGTFAVGWLLPRLPRFYDLYPYIDLRIMTHNNVVNLAGEGVDFAIRFGEGLWPLVENTPLFPAAHTVLCSEKIANKLKTPLDLKEQHLLRSYRKDEWEKWMIAAGIEPWRVKGPLFDSSRLMVEAALLTESVALAPSSMFEHELSAGTLVQPFDISVTLGGYWLSRLKSRPMTPAMAIFRNWLMDESKQA
>LS483422.1|SQH11632.1|332229_332517_-|anaerobic-benzoate-catabolism-transcriptional-regulator
MKKTTSKCVGLKIRALRESRGMSGKALSLLLGISQQHQSRYENGEVNIHVDTLFQLAQIFDIDATYFFSDFNIDNNITNDTHCKKSFYTAETLVF
>LS483422.1|SQH11633.1|332581_332812_-|Helix-turn-helix-domain
MLKYYPASKLVGNKILYYRKMKGVSLLEISKVIGISEQQQSRYERGINRINLDRLAQYVNYFDVSFHDLLMINKTK

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Crispr_ID: LS483422_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483422_2

595622-595715

Orphan

Consensus_repeat	Method
TCAGTAAAACGTGTCGAAAATGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483422_2

>merge|LS483422|2|595622-595715|CRISPRCasFinder
TCAGTAAAACGTGTCGAAAATGAGCATGAAAATGTACATGTCGTGGGAATGTGTTGATTGAATCGACACATCAGCAAAACGTGTCGAAAATGAG

>LS483422|2|2|595622-595715|CRISPRCasFinder
TCAGTAAAACGTGTCGAAAATGAG	CATGAAAATGTACATGTCGTGGGAATGTGTTGATTGAATCGACACA
TCAGCAAAACGTGTCGAAAATGAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483422.1\|SQH11854.1\|596684_597353_-\|Deoxyribose-phosphate-aldolase-2	unknown	unknown	gnl\|CDD\|234784
LS483422.1\|SQH11857.1\|599971_600988_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|185703
LS483422.1\|SQH11860.1\|604973_605729_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|206754
LS483422.1\|SQH11851.1\|593055_594630_+\|Nif-specific-regulatory-protein	unknown	unknown	gnl\|CDD\|226997
LS483422.1\|SQH11847.1\|588901_589324_+\|DoxX	unknown	unknown	gnl\|CDD\|311556
LS483422.1\|SQH11856.1\|598607_599915_+\|L-fucose-permease	unknown	unknown	gnl\|CDD\|340952
LS483422.1\|SQH11843.1\|584008_586432_+\|Dimethyl-sulfoxide-reductase-DmsA-precursor	unknown	unknown	gnl\|CDD\|274006
LS483422.1\|SQH11848.1\|589415_590210_-\|Predicted-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|313370
LS483422.1\|SQH11861.1\|606114_607050_+\|Pyrimidine-specific-ribonucleoside-hydrolase-rihB	unknown	unknown	gnl\|CDD\|239117
LS483422.1\|SQH11850.1\|591450_592569_-\|HflK-protein	unknown	unknown	gnl\|CDD\|259816
LS483422.1\|SQH11855.1\|597586_598507_+\|Ribokinase	unknown	unknown	gnl\|CDD\|274000
LS483422.1\|SQH11846.1\|588047_588644_+\|Twin-arginine-leader-binding-protein-DmsD	unknown	unknown	gnl\|CDD\|236938
LS483422.1\|SQH11862.1\|607089_607563_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483422.1\|SQH11853.1\|595736_596516_-\|Deoxyribose-operon-repressor	unknown	unknown	gnl\|CDD\|182644
LS483422.1\|SQH11844.1\|586428_587070_+\|DMSO-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|131996
LS483422.1\|SQH11859.1\|602544_604704_+\|Ornithine-decarboxylase,-constitutive	unknown	unknown	gnl\|CDD\|237434
LS483422.1\|SQH11849.1\|590221_591448_-\|RNA-splicing-ligase-RtcB	unknown	unknown	gnl\|CDD\|376465
LS483422.1\|SQH11845.1\|587066_587966_+\|DMSO-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|225839
LS483422.1\|SQH11852.1\|594674_595589_+\|Ribonuclease-BN	unknown	unknown	gnl\|CDD\|131697
LS483422.1\|SQH11858.1\|601258_602272_+\|MscS-family-inner-membrane-protein-YnaI	unknown	unknown	gnl\|CDD\|366370

Protein	Function_ID	Function_description	E-value
LS483422.1\|SQH11854.1\|596684_597353_-\|Deoxyribose-phosphate-aldolase-2	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	1.25149e-122
LS483422.1\|SQH11857.1\|599971_600988_+\|Uncharacterised-protein	gnl\|CDD\|185703	cd09269, deoxyribose_mutarotase, deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Site directed mutagenesis of this latter histidine residue renders Salmonella enterica DeoM inactive.	3.4567e-179
LS483422.1\|SQH11860.1\|604973_605729_+\|Uncharacterised-protein	gnl\|CDD\|206754	cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I domain. Phosphoribosyl transferase (PRT) domain. The type I PRTases are identified by a conserved PRPP binding motif which features two adjacent acidic residues surrounded by one or more hydrophobic residue. PRTases catalyze the displacement of the alpha-1'-pyrophosphate of 5-phosphoribosyl-alpha1-pyrophosphate (PRPP) by a nitrogen-containing nucleophile. The reaction products are an alpha-1 substituted ribose-5'-phosphate and a free pyrophosphate (PP). PRPP, an activated form of ribose-5-phosphate, is a key metabolite connecting nucleotide synthesis and salvage pathways. The type I PRTase family includes a range of diverse phosphoribosyl transferase enzymes and regulatory proteins of the nucleotide synthesis and salvage pathways, including adenine phosphoribosyltransferase EC:2.4.2.7., hypoxanthine-guanine-xanthine phosphoribosyltransferase, hypoxanthine phosphoribosyltransferase EC:2.4.2.8., ribose-phosphate pyrophosphokinase EC:2.7.6.1., amidophosphoribosyltransferase EC:2.4.2.14., orotate phosphoribosyltransferase EC:2.4.2.10., uracil phosphoribosyltransferase EC:2.4.2.9., and xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.	1.80977e-05
LS483422.1\|SQH11851.1\|593055_594630_+\|Nif-specific-regulatory-protein	gnl\|CDD\|226997	COG4650, RtcR, Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].	0
LS483422.1\|SQH11847.1\|588901_589324_+\|DoxX	gnl\|CDD\|311556	pfam07681, DoxX, DoxX. These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.	1.02935e-11
LS483422.1\|SQH11856.1\|598607_599915_+\|L-fucose-permease	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.55693e-140
LS483422.1\|SQH11843.1\|584008_586432_+\|Dimethyl-sulfoxide-reductase-DmsA-precursor	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	0
LS483422.1\|SQH11848.1\|589415_590210_-\|Predicted-nucleotidyltransferase	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	8.84052e-94
LS483422.1\|SQH11861.1\|606114_607050_+\|Pyrimidine-specific-ribonucleoside-hydrolase-rihB	gnl\|CDD\|239117	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine and cytidine, E. coli RihB prefers cytidine over uridine. S. cerevisiae URH1 prefers uridine over cytidine. .	2.7688e-165
LS483422.1\|SQH11850.1\|591450_592569_-\|HflK-protein	gnl\|CDD\|259816	cd13438, SPFH_eoslipins_u2, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in bacteria. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Bacterial SLPs remain uncharacterized.	2.02155e-101
LS483422.1\|SQH11855.1\|597586_598507_+\|Ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	2.97863e-141
LS483422.1\|SQH11846.1\|588047_588644_+\|Twin-arginine-leader-binding-protein-DmsD	gnl\|CDD\|236938	PRK11621, PRK11621, Tat proofreading chaperone DmsD.	1.62524e-47
LS483422.1\|SQH11853.1\|595736_596516_-\|Deoxyribose-operon-repressor	gnl\|CDD\|182644	PRK10681, PRK10681, DNA-binding transcriptional repressor DeoR; Provisional.	3.94258e-85
LS483422.1\|SQH11844.1\|586428_587070_+\|DMSO-reductase-iron-sulfur-subunit	gnl\|CDD\|131996	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.	8.58759e-93
LS483422.1\|SQH11859.1\|602544_604704_+\|Ornithine-decarboxylase,-constitutive	gnl\|CDD\|237434	PRK13578, PRK13578, ornithine decarboxylase; Provisional.	0
LS483422.1\|SQH11849.1\|590221_591448_-\|RNA-splicing-ligase-RtcB	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	0
LS483422.1\|SQH11845.1\|587066_587966_+\|DMSO-reductase-anchor-subunit	gnl\|CDD\|225839	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only].	5.52074e-28
LS483422.1\|SQH11852.1\|594674_595589_+\|Ribonuclease-BN	gnl\|CDD\|131697	TIGR02649, Ribonuclease_BN, ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN. [Transcription, RNA processing].	1.07952e-137
LS483422.1\|SQH11858.1\|601258_602272_+\|MscS-family-inner-membrane-protein-YnaI	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.51752e-59

>LS483422.1|SQH11852.1|594674_595589_+|Ribonuclease-BN
MELTFLGTSAGVPTKERNVTSMILNLVGIRKSYWLFDCGEGTQHRILNSPFKASKIEKIFITHLHGDHIFGLPGLLCSRSMGGSTDLLTLYGPKGLKQYIETTLSVSASYMTYPLEIIEIEAGQLFDDGELIVTAYSLEHRVECYGYRIEEHAKSGSLDADKLAQDNIPRGPWMQALKAGETITLEEGRVINGADYLGEPIAGKVIAIFGDTEPTEQALLLAKDADLMVHETTLETAFETKANERGHSTTRQAAKLAREAGVKRFVATHLSGRYSTNDIPMLLAECQAEFPNTEMAEDYLTIKV
>LS483422.1|SQH11851.1|593055_594630_+|Nif-specific-regulatory-protein
MNEKRKVVIGVLGTVLDRRGKRANRWTKWRPTVGLCQQPDFDIHRFELIHQVNDYTLACRVKEDIEQASPQTEVVLREVDIADPWDFEEVYTALLDFSSDYQFDTENEEYLVHITTGTHVVQICWFLLTEAHYLPAKLIQTSPTQGDREKDPTGIHAVIDLDLSRYTNITSRFQKEQQQQVSFLKSGIATRNAAFNTMIEQIERVALRSKAPILLNGPTGAGKSFLAKRIYQLRQSKHQVKGRFIEVNCATLRGDNAMSTLFGHIKGAFTGALTARGGLLKEADGGILFLDEIAELGLDEQAMLLKAIEEKRFFPFGSDNEVQSDFQLIAGTHRNLAQWVEEGKFREDLYARINMWTFILPGLAQRREDIEPNIDYELTRFCQNEQSQIRFDSEARKVYVKFACSPQALWRGNFRELGASINRMATFAERGRITLSVVEEEIARLQAQWQTKQSNKLPAQIGDIDLFDQQQLITVLGVCRRSASLSEAGRALFSVSRQQKKQPNDADRLRKYLAKFDLDWETIR
>LS483422.1|SQH11850.1|591450_592569_-|HflK-protein
MKKINIAQGHIALTSKNGDFKQLLTAGEHRLYDWFNKLTVSLFTLNNDPIDEKLADHLRQFHPDWVNQYCIDITLADDEIGFIYLHNSLTEILPPATRRLYWKTGETLKIEIQSAEEVLINPMLVSRLTGKKRIKGNELALIAQVPAWHVGIFKVDGEIKTLLQPGTYGYWKIAHKPEVEMIDTRLQALEVSGQEILTKDKVTLRINLSANWRYADILLTLSKLSQPIEYLYRELQFALREIVGTRSLDELLENKQLIDQLMMDQIVPNALEFGLEIDSVGVKDIILPGDMRAILSQVVEAEKSAQANVIRRREETAATRSLLNTAKVMENNPVALRLKELETLENIAHRIDQISVYGGLDQVLNGLVKIKA
>LS483422.1|SQH11849.1|590221_591448_-|RNA-splicing-ligase-RtcB
MNNNNFNELIQENSAPVKMWTNGVPVDPKAVVQLQNTAKMPFIFKHLAVMPDVHVGKGSTIGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLTAADLPDNLQNIRFAIEAAVPHGRTTHRHGRDKGAWHRTPDIVDTHWAHLDEDFKRICDKYPKLRTTNHYNHLGTLGTGNHFIELCLDEQNWVWVMLHSGSRGVGNAIGNLFISLAQKDMQQHIANLPDRDLAYFEEGSLHFNDYMEAVGWAQDFARHNREVMMHRVLEALSREITKPFTTQQEAVNCHHNYVQKEQHFGEEILVTRKGAVSAKKGQMGIIPGSMGAKSFIVRGLGDEESFCSCSHGAGRVMSRTEAKKRFSVSDQKIATAHVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIIHTLRQVVCVKG
>LS483422.1|SQH11848.1|589415_590210_-|Predicted-nucleotidyltransferase
METGSESVSVLMKERIHRTLEEIESTHHVKIFFACESGSRGWGFASRDSDYDVRFIYVHKLDWYLTLDRKRDVIEKPIDDELDVSGWELSKALKLMRNSNPALIEWLHSPIVYFKDNEFFANFEQLAAQFYSPLKSRYHYLSIAKRNLHTDFKGEQVRLKKYFYILRAVLALHWIENNTNMPPMAFSELVEATVRNKDVLTEINELLVMKRKADESFYGARRPAIDQLIIETIANAERLQLPEPHCRDSLLLDDFLRKTVLDNG
>LS483422.1|SQH11847.1|588901_589324_+|DoxX
MIGLFNRLLSHDDAGKLLLRFAVGGLMLFHGMSKLMTGASGIKALLASYGLPEFIAYGSIAGEVIAPIFIVLGILTRPSALLVAFTMFVAWLMIGLDKTFLLDKTGAWAIESLVYFFISAIALAFMGSGKYSVMRNACWR
>LS483422.1|SQH11846.1|588047_588644_+|Twin-arginine-leader-binding-protein-DmsD
MIHFSHYAAAFNVLGTCYLFSPKDETSHYAVNFFKTEGFATQWPCKIDKQLSQKMTQALNIDLSALDKQWSDLFIGPQALPAPPWGSVYLDPEGVLQGSSTIALSQFLKRERLKVQTPYPEPSDHVGLMLFQAAVLASQVRESALNELLVEHLGSWLPQFSHQLNRTTPSPFYEALTELTLITVNACHPHHSKINHNE
>LS483422.1|SQH11845.1|587066_587966_+|DMSO-reductase-anchor-subunit
MNEWPLLLFTFLMQASIGLSLMLGLSAKKLSTVFAGKVNTQFLLWYLFVACVFAGIGLLSSITHLGVPLNAPHSLLNLFSSWLSREVVFTATYFTFLGLTFLWLWFKKELSYLLLGLAIIAGLCDVYAMASIYRYTSMLTWMSDNTYFMFYGAMLTLGAAGYYLLINLLLKFNASSDEVQIPSRGLWILWSIIGISLFIRLVYQPFYESYLVDTAYTNESITFPVASISAYQEIWSLRMSSWLIGIFAVITLGYGLFCRMKSTAKITLIPRGNTYLTLGCTSAIVAEFMLRYCFYTIHI
>LS483422.1|SQH11844.1|586428_587070_+|DMSO-reductase-iron-sulfur-subunit
MSKFHVHPPVSDKQLGFYIDSARCSGCKACQVACKDKNNLEVGRKFRRVYEVTGGEFIENGAGGLVNNVFAYTLSISCNHCADPMCVKNCPTTAMHKREGDGIVLVNTDKCVGCGTCAWSCPYGAPQMNPETKQMSKCDFCIDLQLNGEQPVCVATCPLGAIQFGPIDELRKRYGDLADVRGLPDSSITHPNLVIHPHQGSGRSTQAKSGGAK
>LS483422.1|SQH11843.1|584008_586432_+|Dimethyl-sulfoxide-reductase-DmsA-precursor
MKSQNSQNDESVHLIEPLTRRRFIQGSSALMAVPFIASKSIASAPENPSIIAIKTLNNNSDERVVSTCSSFDCGGKCDIRAHVKEGVVTRISTRPDADLDEEMPIMRACVRGRSYRKFVYHPNRLKYPMKRVGKRGEGRFERISWEEATTLIADNMKRINDQYGAASRFVSLSTGVTGGIFSGANMLRRLFNLTGGFLENYHSVSNGNTMAVTPYTYGTSASGSTLDTLENTPLVILWGHNPNETIFGHSNHYFQKMKKNGTKFIVVDPRYSDTASSLADQWIPILPTTDNAMMDAMMYVIISEGLHDQAFIDNYTVGFDEHLMPEGVPENESLVAYLMGKKDGVVKTPEWAEPITKVPADTIRQLAREYANTKPAALMQGWGPQRHICGERSARGATLLATITGNVGVKGGWAAGYGMAVTPDLRKTLAGPSLFENKVKAKINITNWVQACEDKNLVTPDNGLKNAKKLDTEIKMIFSLAGNYMTNQNPDILHAAKVLEDENKVEFIVYSDLYMTPSAKYADILLPETSFMERWNVGGTWGTGNYIILSEKVIEPEFERRSDYEWLREVADKLGVGEQFSEGRTEKEWIEHLVNDAHEKRPEDGIPTFDELLVKRRHLLKHKPHTGHVAFEKNINDLANNPFETPSGKIEIFSKRLYERNDADIPALSHYVPAIEGPEDALVTRYPLQLITWKGRNRANSTQFANPWLQEVQRQELWINPIDAKRRNIEDDSRVKVSNDRGVTMVPVKITQRIMPGVVALQAGAWWQPDEKGIDQGGCANVLTSARSTAMAHGNAHQTLLVEVSKA
>LS483422.1|SQH11853.1|595736_596516_-|Deoxyribose-operon-repressor
MIETKQKERLRRLSECLKRSGRIHLKEAARILEVSEMTIRRDLSADTEGPIPMSLLGGYIVSVTQPAVLATQDQQADVFTPDQTEEIYIPNLAASMVTEDDVIFFDNGIEMATLISLIPDEINFTGICYSHNVFLALSQKKNATALLCGGEYRAKSDSFYSPTLPSLLDSINPKKAFISAAGVHSSYGVTCYNIDDLPMKKKAMEKSIRKILLSQYNLFDEVATANMGELSQFDVIITNRQLSDEYESYCRNSFVKVIF
>LS483422.1|SQH11854.1|596684_597353_-|Deoxyribose-phosphate-aldolase-2
MQDLAKYIDHTLLAADATVNDIKQLCAEAAEYHFASVCVNTANVPLASESLKNSDVKVCCVVGFPLGACLTEAKAFEAAEAVRHGADEVDMVINVGRLKSGDLDFVRKDIEAVFAACGNATLKVILENCLLTDEEITQVCEICRTLKVGFVKTSTGFSTMGATEHHVALMRKVVGDDVGVKASGGVRDRETAIKMIEAGANRVGASASISIVTGEKAAPSKY
>LS483422.1|SQH11855.1|597586_598507_+|Ribokinase
MDIAVIGSNMVDLITYIDQMPKEGETLEAPAFKIGCGGKGANQAVAAAKLNSKVIMLTKVGDDIFADNTIRNLESYGINTRYVEKVPCTSSGVAPIFVNQSSSNSILIVKGANKFLSPEDIERAAEDLKKCKLIVLQLEVQLETVYHAIAFGNKNGIPVLLNPAPALRTLDLDFACRCDFFVPNETELEILTNMPVDTMDNIRRAAQSLLDKGLKNLIVTLGEKGALWMTRDSELFIPAIKVNAIDTSGAGDAFIGCFSHYYVHTGNIEEALKKAVMFSAFSVTGKGTQSSYPSIEQFTEFVQINS
>LS483422.1|SQH11856.1|598607_599915_+|L-fucose-permease
MNIKNITQLPDGYLSKTPLFQFILLSCLFPLWGCAAALNDILITQFKSVFELSNFASALVQSAFYGGYFLIAIPASLVIKKTSYKYAIMVGLILYIAGCSMFFPASHMATYTMFLAAIFAIAIGLSFLETAANTYSSMIGPKEYATLRLNISQTFYPIGAAGGILLGKYLVFSEGDSLQSQMAGMNPEQLHQFRLAMLENTLEPYRYMIMVLVVVMILFLITKFPKCKVAETKDHKRPSAVDTLKYLAKNSRFRKGIIAQFLYVGMQVAVWSFTIRLALEMGDINEREASNFMVYSFGCFFIGKFIANILMTRFNADKVLIIYSVIGALFLAYVAFTPSFTAVYAAVMVSILFGPCWATIYAGTLETVDNEHTEMAGAVIVMAIVGAAFVPAIQGYVADALHSLQLSFLVSMFCFIYVGIYFIGERRFKAKQSAK
>LS483422.1|SQH11857.1|599971_600988_+|Uncharacterised-protein
MNTIIPLHKSLFTEKPTLVLKNDQFSATAFCYSSGVEGLRIENQHGYLTILPFLGQMIWDAEFYGQNLKMENMFSEPKRVPTVIETYGCFAFHSGLISNGCPSPEDNHPLHGEMPCAPMNQAWLELTEESLRIGGEYEYVMGFGHHYRASPSVQLNANSALFDIRMSVTNLASVPMPLQYMCHMNYAYVDNASLSQNIPENAIRLRESIPGHVHPTEQWLEFNQSLKSGEIKLNQLNQPQMCDPEIVFFMDDLAQYTAKPEFRMTSPSGNTFITRFNSAELNYATRWILYNGDQKVGAFVLPATCRPEGFIAAKNNQTLIWLEAGETRQFTVTTGVEK
>LS483422.1|SQH11858.1|601258_602272_+|MscS-family-inner-membrane-protein-YnaI
MIELLLEKYAIGMTIIAVCLALFVIFEAISKKHKHKRKSILVHVIQTIVLCGVVIVAAQYLDMAASDFNLTFISTPLINFITVALIALILMRKLFQLANRLEKQQIKKGSDPTSARIIARIFKTTVFVVIILLFGEHFGMSLSGLMAFGGIGGIAIGMAGKDILSNFFSGIMLYFDRPFNIGDWVSSPDRNIEGTVVEIGWRITKIITFDHRPLYIPNSVFSSISVENPGRMTNRRIKTEIGLRYEDADKVSAIVSDIRTMLQQDENIDTGQTMLVYFDAFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIEIVKRHGADFAYPTQTLYMEKNN
>LS483422.1|SQH11859.1|602544_604704_+|Ornithine-decarboxylase,-constitutive
MKKINVACSQGVAIYFTGQFQWVDIRDAQLNNIAAVVLSEQDANQGLWKRVADSKLSIPLFIISDKQLPDDGKNRPYLTALLPPAPAARDENSRQLLDAANGYLEQLLPPFFARMVDYASGHNVTFACPGHQGGQFFRRHPTGEQFYQFYGENLFRTDLCNADVAMGDLLIHEGAAKEAQKFAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVLFDRNNHKSNHHGALIQAGATTVYLETARNPFGFIGGIDAHCFEEHYLRQLITDVMPEKAQATRPFRLAVIQLGTYDGTVYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMRQCSPLLLELNENDPGIMVTQSVHKQLSGFSQASQIHKKDNHIKGQARFVSHKKLNNAFMMHASTSPFYPLFASLDVNARMHQGEAGEMMWMECVKQGIEVRKSIIKHCRYFRPFLPELVDGLPWHEYPTEQIASEQRFFNFIPKERWHAFDGYAQDQYFVDPCKLMLTTPGIDVESGEYESFGVPATILAHFLREHGVIPEKCDLNSILFLLTPAETSEKLELLVSHLVRFEQLLDEDALFEDVLPSVYQRYQAHYQGYTLRRLCQEMHQLSVDDNIKQLQKEMFRKKHFPEVKMNPQQAHLAFIRGNCELLPLDELEGRIAVEGALPYPPGVLCVVPGEVWSGPVLRYFKALEAGINALPGFAPELQGVYVSKNEGEKKRVYAHVLK
>LS483422.1|SQH11860.1|604973_605729_+|Uncharacterised-protein
MGFLISKEGLVEVDHNVKNFGNTLIKGNPTESITRCYHNPMKIYSIFLRQKSYTANLGDNCPLIYALKRKRGLYVTKDSIGSLCLHIYEIMMLFFKGRLSEGTLYDLIIPMPSSHKISYYLAKRISELFTNSCVVSDFFRKASCEDVLKQINTDQGTPHNAKVNIINAINSAKKSGSNFSIGDVNTKFRKYVSPLAFKGGNFHDKKVLLIDDLFATGSTIISAKNYIHSASDVLKVDGLCLFSPLNGRIKK
>LS483422.1|SQH11861.1|606114_607050_+|Pyrimidine-specific-ribonucleoside-hydrolase-rihB
MTKKIILDCDPGHDDAIALLLAYGNPEIDLLAVTTVAGNQTLEKVTYNALAIAEMAKIRNIPFAAGSARPLVRDIEVAPDIHGESGLDGPELPKPTLALDKRHAVSLIIDTIMSHPPKTITLVPTGALTNIALAARLEPRIVERVKEVVLMGGGYHVGNWSPVAEFNIKIDPEAAHIVFNEKWPLTMVGLDLTHQALATPEVVAKIADIGTQCSQFVVELLDFFGKMYKQAQGFDSPPVHDPCAVAYVIDSSVMTTQKVPVDIELSGALTLGMTVADFRHPAPEDCHTQVAMKLDHDKFWLLVINALKNIG
>LS483422.1|SQH11862.1|607089_607563_+|Uncharacterised-protein
MNDNLEQMPYETLIERSMSSLQAKNQFHCDSWKLDEADWSVDQDEGTIIFHAPDNIVATAPVQIVGTYDQNQGSWMWGWANSSIEAKLTQDAVAVKAYGERSNNSLLTGRISHIEEYDAWQLTALACELRNQQGAYRGIAGNTLIFMTFGQVSLNKK

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Crispr_ID: LS483422_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483422_3

1305101-1305188

Orphan

Consensus_repeat	Method
ACTCGGCTACTCGGGTCACATACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483422_3

>merge|LS483422|3|1305101-1305188|CRISPRCasFinder
ACTCGGCTACTCGGGTCACATACTTGTTCCCGTCATACTTCGAGCTGTAGCGTTGTTGGCTGCACTCGGCTACTCGGGTCACATACTT

>LS483422|3|3|1305101-1305188|CRISPRCasFinder
ACTCGGCTACTCGGGTCACATACTT	GTTCCCGTCATACTTCGAGCTGTAGCGTTGTTGGCTGC
ACTCGGCTACTCGGGTCACATACTT

Protein	Signature genes	Signature genes Name	Protein_function
LS483422.1\|SQH12460.1\|1315026_1315506_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379766
LS483422.1\|SQH12458.1\|1313415_1313886_-\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|226610
LS483422.1\|SQH12441.1\|1296052_1297633_+\|Mnh-complex-subunit-A1	unknown	unknown	gnl\|CDD\|235805
LS483422.1\|SQH12451.1\|1305690_1307367_-\|Formate-dehydrogenase-H	unknown	unknown	gnl\|CDD\|130652
LS483422.1\|SQH12454.1\|1309669_1309864_-\|Protein-of-uncharacterised-function-(DUF1656)	unknown	unknown	gnl\|CDD\|377931
LS483422.1\|SQH12450.1\|1303464_1305057_+\|Formate-hydrogenlyase-transcriptional-activator	unknown	unknown	gnl\|CDD\|237965
LS483422.1\|SQH12459.1\|1313984_1314839_+\|HTH-type-transcriptional-activator-AllS	unknown	unknown	gnl\|CDD\|223656
LS483422.1\|SQH12447.1\|1301678_1301951_-\|Hydrogenase-isoenzymes-formation-protein-hypC	unknown	unknown	gnl\|CDD\|182438
LS483422.1\|SQH12443.1\|1299382_1299934_+\|NAD(P)H-quinone-oxidoreductase-subunit-I	unknown	unknown	gnl\|CDD\|181301
LS483422.1\|SQH12449.1\|1302338_1302887_-\|Electron-transport-protein-hydN	unknown	unknown	gnl\|CDD\|182382
LS483422.1\|SQH12453.1\|1308756_1309677_-\|Inner-membrane-protein-yibH	unknown	unknown	gnl\|CDD\|224482
LS483422.1\|SQH12455.1\|1309879_1311817_-\|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB	unknown	unknown	gnl\|CDD\|377393
LS483422.1\|SQH12448.1\|1301986_1302328_-\|hydrogenase-nickel-incorporation-protein-HybF	unknown	unknown	gnl\|CDD\|376468
LS483422.1\|SQH12457.1\|1313010_1313355_+\|Antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
LS483422.1\|SQH12445.1\|1300705_1301134_+\|formate-hydrogenlyase-maturation-protein-HycH	unknown	unknown	gnl\|CDD\|369371
LS483422.1\|SQH12456.1\|1311934_1312840_-\|Nodulation-protein-D-2	unknown	unknown	gnl\|CDD\|176149
LS483422.1\|SQH12446.1\|1301130_1301610_+\|Hydrogenase-3-maturation-protease	unknown	unknown	gnl\|CDD\|236925
LS483422.1\|SQH12452.1\|1308162_1308630_-\|Silver-binding-protein-silE-precursor	unknown	unknown	unknown
LS483422.1\|SQH12444.1\|1299930_1300713_+\|Hydrogenase-3-component-G	unknown	unknown	gnl\|CDD\|225799
LS483422.1\|SQH12442.1\|1297634_1299368_+\|Hydrogenase-4-component-G	unknown	unknown	gnl\|CDD\|225800

Protein	Function_ID	Function_description	E-value
LS483422.1\|SQH12460.1\|1315026_1315506_+\|Uncharacterised-protein	gnl\|CDD\|379766	pfam16103, DUF4822, Domain of unknown function (DUF4822). A lipocain-like domain found in functionally uncharacterized bacterial proteins, often as a repeat of two domains. Proteins with this domain are found in a wide range of bacteria and are often annotated as S-layer proteins, but the origin of this annotation is not clear.	5.08225e-18
LS483422.1\|SQH12458.1\|1313415_1313886_-\|Predicted-membrane-protein	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	5.7284e-51
LS483422.1\|SQH12441.1\|1296052_1297633_+\|Mnh-complex-subunit-A1	gnl\|CDD\|235805	PRK06458, PRK06458, hydrogenase 4 subunit F; Validated.	0
LS483422.1\|SQH12451.1\|1305690_1307367_-\|Formate-dehydrogenase-H	gnl\|CDD\|130652	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type. This model describes a subset of formate dehydrogenase alpha chains found mainly archaea but also in alpha and gamma proteobacteria and a small number of gram positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized). This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.	0
LS483422.1\|SQH12454.1\|1309669_1309864_-\|Protein-of-uncharacterised-function-(DUF1656)	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	0.000630193
LS483422.1\|SQH12450.1\|1303464_1305057_+\|Formate-hydrogenlyase-transcriptional-activator	gnl\|CDD\|237965	PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FlhA.	0
LS483422.1\|SQH12459.1\|1313984_1314839_+\|HTH-type-transcriptional-activator-AllS	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.19924e-39
LS483422.1\|SQH12447.1\|1301678_1301951_-\|Hydrogenase-isoenzymes-formation-protein-hypC	gnl\|CDD\|182438	PRK10413, PRK10413, hydrogenase maturation factor HybG.	2.55048e-38
LS483422.1\|SQH12443.1\|1299382_1299934_+\|NAD(P)H-quinone-oxidoreductase-subunit-I	gnl\|CDD\|181301	PRK08222, PRK08222, hydrogenase 4 subunit H; Validated.	2.89468e-105
LS483422.1\|SQH12449.1\|1302338_1302887_-\|Electron-transport-protein-hydN	gnl\|CDD\|182382	PRK10330, PRK10330, electron transport protein HydN.	1.30455e-82
LS483422.1\|SQH12453.1\|1308756_1309677_-\|Inner-membrane-protein-yibH	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	2.1793e-74
LS483422.1\|SQH12455.1\|1309879_1311817_-\|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	8.78084e-99
LS483422.1\|SQH12448.1\|1301986_1302328_-\|hydrogenase-nickel-incorporation-protein-HybF	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	1.71009e-45
LS483422.1\|SQH12457.1\|1313010_1313355_+\|Antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	5.14218e-21
LS483422.1\|SQH12445.1\|1300705_1301134_+\|formate-hydrogenlyase-maturation-protein-HycH	gnl\|CDD\|369371	pfam07450, HycH, Formate hydrogenlyase maturation protein HycH. This family contains the bacterial formate hydrogenlyase maturation protein HycH, which is approximately 140 residues long. This may be required for the conversion of a precursor form of the large subunit of hydrogenlyase 3 into a mature form.	1.69769e-81
LS483422.1\|SQH12456.1\|1311934_1312840_-\|Nodulation-protein-D-2	gnl\|CDD\|176149	cd08460, PBP2_DntR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.8621e-77
LS483422.1\|SQH12446.1\|1301130_1301610_+\|Hydrogenase-3-maturation-protease	gnl\|CDD\|236925	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional.	2.38736e-88
LS483422.1\|SQH12444.1\|1299930_1300713_+\|Hydrogenase-3-component-G	gnl\|CDD\|225799	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion].	4.278e-81
LS483422.1\|SQH12442.1\|1297634_1299368_+\|Hydrogenase-4-component-G	gnl\|CDD\|225800	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion].	0

>LS483422.1|SQH12450.1|1303464_1305057_+|Formate-hydrogenlyase-transcriptional-activator
MSTSDNSEKIRHERDQYRILVDITNSVLSHLEMDGLVAEVSREIYRFFGISQISVALCDNDSSAIYLCYSSYYQRSIPVEKTQYHLTELHPDLTWVLETNKPLRLTLAQETHDPLYQQVTAQGMTETLLLPLAFNHKPLGVLVLSHENNTIFTDDNCNLLKQIAARFAIAVDNAAAYGEITHLKDSLKNENLWLNEQIHNMDSFSEIIFQSEAMRNVLEQVDLVAPSDSTVLILGETGTGKELIARAIHRLSQRHQRAIIKMNCAAIPSGLLESDLFGHDKGAFTGATTTHIGRFEMADKSTLFLDEIGDMPLELQPKLLRVLQEREIERIGGNKIIPVDVRLIAATNRDLKGMTEEREFREDLYYRLNVFPITIPPLRERPEDIPLLATYFTKKIAQRMNRKIDCIPRDALAQLSLYPWPGNVRELENVIERAVILTRGNTLNLQLHELNIPKPSRLKNALSKPSSLEKRMQTEAPESDDEERNRIIEALKATNGVVAGARGAATRLGLKRTTLLSRMQRLGISVQDLF
>LS483422.1|SQH12449.1|1302338_1302887_-|Electron-transport-protein-hydN
MNRFIIADPKKCIGCHTCEVACVVSHQEQETGIATVVKDEFFPRIHVLKGYTVSTAVVCRQCEDAPCANVCPNGAISKKDDFVYVDQSKCIGCKTCVIACPYGTMEVVSRLVAQKTTALNTIPQYRAEAHKCDLCHTRENGPACVEVCPTDALIVVDRNRMDEIVKERRRRAAFETPADLMS
>LS483422.1|SQH12448.1|1301986_1302328_-|hydrogenase-nickel-incorporation-protein-HybF
MHEVALCQSAFDIIEQHAKQNHARRVTGVWLELSAVSCVEESAVHFCFDIICRNTLAEGAKLHINTIPATAWCRDCQSTTQVIQFATGCPHCGSQNLQIDSSDTMQVKQIEVE
>LS483422.1|SQH12447.1|1301678_1301951_-|Hydrogenase-isoenzymes-formation-protein-hypC
MCLGIPGKVVSVGDSPMDTAQIEVCGVRRDVNIALVCDGKTLDMLGKWVLVHVGFAMSIIDEQEAQDTLEALMAMESVEEDVAYFLRGNA
>LS483422.1|SQH12446.1|1301130_1301610_+|Hydrogenase-3-maturation-protease
MSELSTPNLMLAVGNSMMGDDGAGPMLFDLMQENPIENWLAINGGSSPESVTHQVRALQPKRLLIVDAADIGLNPGEIRVIDPDDIAEMFIMSTHNLPLNFLIDQLKDDIDEIIFLGIQPDLVGFYMPMNEQVITAVQQVYQALPHWEGLGGFKLFDGE
>LS483422.1|SQH12445.1|1300705_1301134_+|formate-hydrogenlyase-maturation-protein-HycH
MTEHRIEQPDGKVVFWSLRQKFVDSDDDVPEEAQQVMYYSLAIGHHVGMIDCLNTELECPLKGYQSWVEALPEGEARRKLQGLLTFGEINIDSTHTNMLALALDAFSKDVNSPYCQWSSTLIRLLAEIEREPAIYLIVKRRP
>LS483422.1|SQH12444.1|1299930_1300713_+|Hydrogenase-3-component-G
MSLPDIPVNHHVSQPIIVDEQVAKLKSTLLKDIKRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRAMRMPALRAYESAPDPKICISYGACGCGGGIFQDLYCVWGGSEHIVPIDVWIPGCPPTPAATIYGFAVALGLLNQKLTAQEHHEEEGERVELLLPSIPLATRVMIEREARRQAGYFQGREISDKFLSLLDGATPKQVQSTLQKWLSEEQDPRLRDIVNRLVTVLQQGGTHD
>LS483422.1|SQH12443.1|1299382_1299934_+|NAD(P)H-quinone-oxidoreductase-subunit-I
MFKLFKTLRDAGTATVKYPFKPLEVAHGFRGKPEYDPQQCIACGACISACPANALTMETDLESGERRWQLFIGRCIYCARCEEVCPTRAIHLTEDFETAVMNKADLYIKATFRLQYCRQCGEAFAPKKSVEYAMALMVASGIEESGIEALRPMYETCPSCKQKNNLLNNERKNFRLHIEGDKS
>LS483422.1|SQH12442.1|1297634_1299368_+|Hydrogenase-4-component-G
MSYQNYTDTLQGVRKGTGYLAQVREKFPHTILDEEWQTANQVTITIKTEMLPQVVEFLYYGCGGWLPVLWGNDERPLNGQFAVYYALSMEEGEKCWVTVKAFVSPITQEFPSVTPRVPAAVWGEREVRDMYGLRPVGLPDERRLVLPDDWPEDLYPLRKDTMDYRQRPAPTTDTETYEFINDSKTQSRVVPIGPLHITSDEPGHFRLFVDGERIVDADYRMFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFTHSVAYTSSVENALGIYVPQRAHTIRSVLLEVERLHSHLLNIGLASHFTGFDTGFMQFFRVREKSMTMAELLTGARKTYGTNLIGGVRRDFLKDQRIKTIQLVQEMRRDVTQLVDMLLSTPNMEQRTVGVGLLDPKIARDYSPVGPMIRASGFKRDVRFDHPFADYGNLPKTLFTMDGCDVYSRVMVRIKETLDSLSMIEYALDNMPEGPILTEGFTYQPHKFALGYTEAPRGEDIHWSMLGDNQKLYRWRCRAATYANWPVLRYMLQGNTVSDAPLIIGSLDPCYSCTDRVTLVDVKKRKAKTVAYKELEQHSLERKHSIMK
>LS483422.1|SQH12441.1|1296052_1297633_+|Mnh-complex-subunit-A1
MTQTMLLTLLMATPLVISLLAFACRLLGNGAKGAVTLVHTIGIILLLVLSLWMVHTIGEVGDLLMAGRWIHLDSLAGLFLAILGIVGFLTGLYSIGYMNHEVEEAEISVGTLCNYYGFFHLFLFTMLLVITSNNLILMWAAVEATTFSSAFLVGIYGQRSSLEAAWKYIIICSVGVAFGLFGTILVYANAVNVMPDPELAIFWTEVLKYTELLDPTLMHLAFVFVLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLIIIRYYIIVTSAIGGEFTQTLLLVFGLLSVAVAAFFILVQRDMKRLLAYSSVENMGLIAVALGIGGPLGVLAALLHTLNHSLAKTLLFCGSGNVLLKYGTRDITVVKGLLRTMPFTAVVFAGGALALGGMPPFNIFLSEFMLVVAGIAADHIWLTLLVLILITLVLGGLVRMISKTLFGAQPDCVSKGELGILTTLPMAILIVLMLVMGTHIPQSVSHLLENAATIVLKDSTLPNTEFTTLHYQWPWGANPSTTSLQEK
>LS483422.1|SQH12451.1|1305690_1307367_-|Formate-dehydrogenase-H
MSNSIVEIEDTKCIFVFGYNAADSHPIVARRILKAKEKGAQIIVCDPRYIETARIADIHLALKNGSNIALINAFAHVIIEENLYDNAFIEAHTEKFEQYRGLVAPYTPESVEEITGIQAEDIRRTARMYAKAESATILWGMGVTQFYQGVETVQALTSLALLTGNLGKPHVGVGPVRGQNNVQGACDMGALPNTLPGYQYVEDKAALEKFAKFWGIEKMPDENGIPLSEVPHFIDEGVLKAHYVMGEDPLQTEPDLATIRRTFDKLELLIVQDIFMTKTASIADVIFPATSWGEHEGVYTAADRGFQRFYKAVEPVGDVKTDWEIISLMSTAMGYPMHYNNTQEIWDELRELCPIYYGATYEKMAGLAYIQWPCRTLESEGTEYLYEGGQFDTPNGKGQFFTCDWRPPIDQVSTEYPMVLATVREVGHYSCRSMTGNCKALAALADEPGFVQINTADAKALGIKDQELVWVASRQGKVITRANISERPNKGAVYMTYQWWIGACNELVAENLSPITKTPEYKYCAVRVEPIDDQQKAEHYVVQEYTSIKRRLREAAEG
>LS483422.1|SQH12452.1|1308162_1308630_-|Silver-binding-protein-silE-precursor
MKKLIFPAVFLLTLNATAYADNMSHKKAVVSLSFTENNTSYANQAAIATHIKAGQLPVSEIKGTSKPFSQMGTHEKAAIALSFIENNMSHANQTAITSHIKAAGLSTNEINGIAKPFSLMDSHEKAATAMNFTENNTSPSIQYTINQHLIRSQTR
>LS483422.1|SQH12453.1|1308756_1309677_-|Inner-membrane-protein-yibH
MSKRLLPLRQLGKSFFSVGCLIAAVYAVWLLWQAYENTPWTRDAKVVAQVVRIAPEVSGTIEAITVADNQLVNQGDELYRLEQSRFQFAVNEAQANLAIAQQQWQQKNADAKRRASIKHMLSQEEVQQSARDASIAQSAVQKATIALSIAKLDLEKSIIRAPVTGYITHLRIQKGDYATAGKANLSLVNTDSFIVMGYFEETKLSQIHVNAPVNIRLMAYSTPLTGHIESIGYGITDENQQLDEFGLPHVNPSFSWIRLAQRVPVRIVFDQLPSDIHLTAGLTASVEVETEQDIHSSLIARLYKIL
>LS483422.1|SQH12454.1|1309669_1309864_-|Protein-of-uncharacterised-function-(DUF1656)
MFHEIAFSGVLLPPIFVSIFLCLPFLYVFKMTLARWHWLQQQWHPALIEFALSLIFISAWVLYV
>LS483422.1|SQH12455.1|1309879_1311817_-|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB
MSYLMSTRFWRKNFSGFHRIFPSLTLHQWQINYILRCSIAAGLALFLAYYLELQMPYSAVATVLLVINPTHGVVLAKGMWRFLGTIFGMVAAFVLVSLFSQKPWLFIMGFAIWIGLCVAAMSLLRHFRASGAVVAGYTIGLATYGAMQHPEFAFDHIFGRGATVFIGILCLSIVTILFNKRPTENKLKSQIASVNQQLFEHLADQFNNFASGEKQASKNTETLLPTIYQLDDLLAVAKSESSSVAYKSIWVRHAMALLANAAITPLPMNLSQQMHLKIAQCWTAIAQEKSLSAQIKILDEIESICLENSQKPALGLLKLVDDIRQALNYFAMLDKKTGYKAARNVVFIRSFSAAWENGSRAAITLFLAGALWLITGWQHGDMMLLVLAPYCSLLATVPNPVPGSKAFFRGTLYAIPAACLCTFAILPLINGFPLLLIVLMLFWLPGIYATSVPKYGLTGLAYLVAFTILTDINNPIQYDFERFLNWSLAWAVATFFAWMGFLIILPKNIVAQKLKLYQRILNNTVIAFNQKIASPNVWQQKQQHRLILLANGPLLTPALIYTQLGVVVMQWKKQLSQHDQNNIQYYLSNIALRLTDPKKALLHIRKLQQNLLQEYKDSPSEYTNHYHFSHDMENLLLQLKALKTA
>LS483422.1|SQH12456.1|1311934_1312840_-|Nodulation-protein-D-2
MSFPDLNLLFALDALLEKSSVNGAAQKLNLSPSAMSRTLSRIRETLDDPILVQAGRKMVPTPKALAMQKEVKQALNQITELLSNERHTDLSAITRRFTIRANDIFLAKYGQQLLEAISNELPNAILCFTPEEDSIDVDALRSGQIDLYISAERQLGPEICVQPLFDTHFVGVVRDDHPILQSEITCEQFVNWKHIVISRRGKTQGPMDEYLSQFGLERKIAMIAPTAFSAIFAILKSDYILVLPVHLAENAIQNDIHIQYFQLPLPTDNISIVQAWHPQFQQDVPHQWLRRKIRSFSESNE
>LS483422.1|SQH12457.1|1313010_1313355_+|Antibiotic-biosynthesis-monooxygenase
MIAVIFELQANEGQQDNYLALAQQLKESLTDIEGFISIERFQSLSDNNKLLSLSFWEDKNAVMAWRNTELHRLAQAKGRQSILKHYRLRVASVIRDYGLTEREMAPIDSLKYHQ
>LS483422.1|SQH12458.1|1313415_1313886_-|Predicted-membrane-protein
MSKNKKTLTERIFHAVSFEMIAIAITAPVSAWLLGRSIFQMGTVAIVLSTLAMVLNIFYNMLFDRYWPLSGRSRPVKVRIAHAIGFELSFVILGVPTLALLLNMSLWSALVLEIGFFAFFFFYTYAFNLAYDVLRTRWFTYKEQQALEAKQIIERI
>LS483422.1|SQH12459.1|1313984_1314839_+|HTH-type-transcriptional-activator-AllS
MNYSIETLRTFVEAASLKSFSAAARKLNKSQSTVSSTISGFEDDLGFPLFDRQGRESTLTFAGKKVLSLVEDILSADERLQALRVELSPDIEPRLSCAFSDIYQPPHADDLLKTLDGQFPHIEFEFLIAENDDVINMLQNQQAHIGMMESRIEYPADITFSRLPIKGELGLYVLKSHPLAKQKNIAYQHLTMTRQLRLSSSTQTIINSEKNWLAPNYLLLLEMAEQGMGWAILPTWLVKQFGHDLLTSLNYDQWPRKIDVDLVWSKNYPPGKAGYWLIDKLLRA
>LS483422.1|SQH12460.1|1315026_1315506_+|Uncharacterised-protein
MKKLLVPTLLAVVSTMSFNIQAASAPTESQKEAVKSNLNTYEQIMVGKVWETTGAQDQDKKAVSADDKQVANFFGLAEYYPDGTFNMTTFDGKPKMKGDWSFGEDGKTRSLTAKDDKGDVLFTRVVENVTVTPEEYTYRIYPEQGNKNKYFDIVHKVKE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

584008 : 592569

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH11843.1\|584008_586432_+	Dimethyl sulfoxide reductase DmsA precursor	A0A077SK27	Escherichia_phage	5.8e-137	38.0
SQH11844.1\|586428_587070_+	DMSO reductase iron-sulfur subunit	A0A077SL61	Escherichia_phage	3.1e-61	55.1
SQH11845.1\|587066_587966_+	DMSO reductase anchor subunit	NA	NA	NA	NA
SQH11846.1\|588047_588644_+	Twin-arginine leader-binding protein DmsD	A0A077SLS7	Escherichia_phage	4.0e-15	37.7
SQH11847.1\|588901_589324_+	DoxX	NA	NA	NA	NA
SQH11848.1\|589415_590210_-	Predicted nucleotidyltransferase	Q8SCS5	Pseudomonas_phage	2.3e-42	43.4
SQH11849.1\|590221_591448_-	RNA-splicing ligase RtcB	A0A1V0EEW8	Caulobacter_phage	1.5e-133	60.7
SQH11850.1\|591450_592569_-	HflK protein	A0A2P1EMF1	Moumouvirus	3.2e-13	26.3

DBSCAN-SWA_2

1933399 : 2030436

106

Morganella_phage(14.89%)

protease,tail,portal,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH12981.1\|1933399_1934521_-\|tRNA	tRNA-specific 2-thiouridylase mnmA	NA	NA	NA	NA
SQH12982.1\|1934673_1935126_-	Phosphatase nudJ	NA	NA	NA	NA
SQH12983.1\|1935118_1935760_-	Ribosomal large subunit pseudouridine synthase E	NA	NA	NA	NA
SQH12984.1\|1935903_1936572_-	Uncharacterised protein	NA	NA	NA	NA
SQH12985.1\|1937182_1938436_+	Isocitrate dehydrogenase [NADP]	Q77Z09	Phage_21	2.0e-19	88.9
SQH12986.1\|1938555_1939683_-	Site-specific recombinase XerC	Q77Z04	Phage_21	1.0e-123	57.6
SQH12987.1\|1939666_1939909_-	Excisionase-like protein	NA	NA	NA	NA
SQH12988.1\|1939949_1940519_-	Uncharacterised protein	A0A1W6JP74	Morganella_phage	8.5e-55	57.8
SQH12989.1\|1940528_1940957_-	Uncharacterised protein	NA	NA	NA	NA
SQH12990.1\|1940959_1941634_-	Uncharacterised protein	H2BDG4	Pseudomonas_virus	2.7e-39	42.6
SQH12991.1\|1941636_1942107_-	Uncharacterised protein	A0A1W6JPA7	Morganella_phage	1.1e-39	50.6
SQH12992.1\|1942129_1942807_-	Uncharacterised protein	A0A1W6JP46	Morganella_phage	4.4e-34	37.3
SQH12993.1\|1942890_1943793_-	recombination associated protein	A0A1W6JP69	Morganella_phage	3.1e-75	49.8
SQH12994.1\|1943944_1944130_-	Carbon storage regulator homolog	A0A2I7RT00	Vibrio_phage	2.6e-13	68.6
SQH12995.1\|1944238_1944508_+	Uncharacterised protein	NA	NA	NA	NA
SQH12996.1\|1944776_1945226_-	Uncharacterised protein	NA	NA	NA	NA
SQH12997.1\|1945387_1945888_-	Helix-turn-helix	A0A2H4J6Q0	uncultured_Caudovirales_phage	6.6e-11	49.5
SQH12998.1\|1946029_1946242_+	putative zinc finger/helix-turn-helix protein, YgiT family	NA	NA	NA	NA
SQH12999.1\|1946300_1946867_+	Uncharacterised protein	A0A1C9II13	Salmonella_phage	1.3e-47	52.8
SQH13000.1\|1946872_1947067_+	Uncharacterised protein	NA	NA	NA	NA
SQH13001.1\|1947056_1947236_+	Uncharacterised protein	NA	NA	NA	NA
SQH13002.1\|1947244_1948294_+	Uncharacterised protein	S5FM81	Shigella_phage	3.3e-60	61.5
SQH13003.1\|1948293_1948539_+	Uncharacterised protein	A0A1W6JP32	Morganella_phage	2.6e-08	38.3
SQH13004.1\|1948538_1949183_+	phage N-6-adenine-methyltransferase	Q8SBE9	Shigella_phage	1.3e-88	70.8
SQH13005.1\|1949179_1949527_+	Uncharacterised protein	NA	NA	NA	NA
SQH13006.1\|1949698_1950103_+	Uncharacterised protein	NA	NA	NA	NA
SQH13007.1\|1950087_1950474_+	Crossover junction endodeoxyribonuclease rusA	K7PKN5	Enterobacterial_phage	5.6e-26	52.5
SQH13008.1\|1950470_1951010_+	Protein of uncharacterised function (DUF968)	A0A1W6JP62	Morganella_phage	1.3e-44	72.3
SQH13009.1\|1951041_1951593_+	Protein of uncharacterised function (DUF1133)	A0A0U2S606	Escherichia_phage	2.0e-32	43.8
SQH13010.1\|1952141_1952249_+	Uncharacterised protein	NA	NA	NA	NA
SQH13011.1\|1952507_1952813_+	Uncharacterised protein	F1C5D1	Cronobacter_phage	6.6e-22	51.0
SQH13012.1\|1952805_1953198_+	Uncharacterised protein	A0A0G2SSJ3	Proteus_phage	7.4e-42	65.0
SQH13013.1\|1953194_1953764_+	Uncharacterised protein	K7P6W1	Enterobacteria_phage	4.4e-27	51.7
SQH13014.1\|1953723_1953924_+	Uncharacterised protein	NA	NA	NA	NA
SQH13015.1\|1954697_1955393_+	Uncharacterised protein	NA	NA	NA	NA
SQH13016.1\|1955403_1955547_+	Uncharacterised protein	NA	NA	NA	NA
SQH13017.1\|1955485_1955677_+	Uncharacterised protein	NA	NA	NA	NA
SQH13018.1\|1955788_1956325_+	Protein of uncharacterised function (DUF1441)	A0A291AWV8	Escherichia_phage	5.9e-50	70.0
SQH13019.1\|1956324_1958439_+\|tail	Bacteriophage tail assembly protein	A0A291AWY5	Escherichia_phage	2.9e-289	66.2
SQH13020.1\|1958435_1958648_+	Uncharacterised protein	K7PMB5	Enterobacterial_phage	4.2e-15	58.6
SQH13021.1\|1958647_1960165_+\|portal	phage portal protein, lambda family	K7PHM5	Enterobacterial_phage	1.2e-191	66.6
SQH13022.1\|1960172_1962158_+\|protease	ATP-dependent Clp protease proteolytic subunit 1	S5M7Q8	Escherichia_phage	1.4e-237	61.7
SQH13023.1\|1962242_1962590_+	Uncharacterized conserved protein	Q9EYD5	Enterobacteria_phage	1.5e-14	43.5
SQH13024.1\|1962593_1962890_+	Uncharacterised protein	NA	NA	NA	NA
SQH13025.1\|1962873_1963431_+\|tail	Prophage minor tail protein Z (GPZ)	K7PMB7	Enterobacterial_phage	1.8e-33	42.9
SQH13026.1\|1963430_1963829_+\|tail	Phage minor tail protein U	A0A2R9YJI2	Escherichia_phage	1.9e-32	47.3
SQH13027.1\|1963840_1964353_+	Uncharacterised protein	K7P6G8	Enterobacteria_phage	1.8e-56	65.4
SQH13028.1\|1964425_1964800_+\|tail	phage minor tail protein G	NA	NA	NA	NA
SQH13029.1\|1964865_1965138_+\|tail	phage tail assembly protein T	NA	NA	NA	NA
SQH13030.1\|1965112_1968088_+\|tail	Phage-related minor tail protein	E4WL33	Enterobacteria_phage	2.6e-118	33.6
SQH13031.1\|1968452_1969016_+	Uncharacterised protein	A0A1X9SFL9	Acinetobacter_phage	2.0e-19	51.3
SQH13032.1\|1969099_1969429_+	Phage-related protein	A0A0P0ZDL9	Stx2-converting_phage	7.9e-13	38.0
SQH13033.1\|1969497_1969911_+	Uncharacterised protein	A0A0S2SY85	Pseudomonas_phage	4.3e-16	40.4
SQH13034.1\|1969968_1970667_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	4.1e-67	52.6
SQH13035.1\|1970675_1971404_+	NlpC/P60 family	A0A0P0ZDJ9	Stx2-converting_phage	4.4e-88	60.7
SQH13036.1\|1971553_1971964_+\|tail	Phage-related protein, tail component	K7PH50	Enterobacteria_phage	4.6e-26	48.0
SQH13037.1\|1971966_1976271_+	Domain of uncharacterised function (DUF1983)	A0A0P0ZDT4	Stx2-converting_phage	7.7e-265	53.1
SQH13038.1\|1976267_1977356_+	Uncharacterised protein	NA	NA	NA	NA
SQH13039.1\|1977365_1977521_+	Uncharacterised protein	NA	NA	NA	NA
SQH13040.1\|1977586_1979137_+	Uncharacterised protein	A0A1S6KUV1	Providencia_phage	3.6e-39	32.9
SQH13041.1\|1979177_1979558_-	Inner membrane protein yhaH	NA	NA	NA	NA
SQH13042.1\|1979645_1979927_-	DNA damage-inducible protein I	A0A1W6JP10	Morganella_phage	1.4e-13	47.0
SQH13043.1\|1980414_1980567_+	Isocitrate dehydrogenase [NADP]	Q77Z09	Phage_21	1.9e-17	86.0
SQH13044.1\|1981388_1982360_+	P pilus assembly protein, pilin FimA	NA	NA	NA	NA
SQH13045.1\|1982568_1982724_+	Uncharacterised protein	NA	NA	NA	NA
SQH13046.1\|1982698_1983574_-	E3 ubiquitin-protein ligase slrP	NA	NA	NA	NA
SQH13047.1\|1983620_1984052_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
SQH13048.1\|1984304_1984619_+	Osmotically-inducible protein Y precursor	NA	NA	NA	NA
SQH13049.1\|1984753_1985353_-	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA
SQH13050.1\|1985869_1986259_+	Uncharacterised protein	NA	NA	NA	NA
SQH13051.1\|1986424_1988083_-	Serine chemoreceptor protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-11	24.8
SQH13052.1\|1988461_1988800_+	Inner membrane protein ydgC	NA	NA	NA	NA
SQH13053.1\|1988902_1989301_+	Uncharacterised protein	NA	NA	NA	NA
SQH13054.1\|1989468_1989960_-	Uncharacterised protein	NA	NA	NA	NA
SQH13055.1\|1990122_1990467_+	Protein of uncharacterised function, DUF486	NA	NA	NA	NA
SQH13056.1\|1990573_1991725_-	Histidinol-phosphate aminotransferase	A0A1X7QHI1	Faustovirus	3.3e-13	24.6
SQH13057.1\|1992133_1992472_-	Uncharacterised protein	NA	NA	NA	NA
SQH13058.1\|1992936_1994550_+	Transposase	NA	NA	NA	NA
SQH13059.1\|1994530_1995049_+	Aromatic amino acid exporter YddG	NA	NA	NA	NA
SQH13060.1\|1995110_1995947_-	Phosphatase YidA	NA	NA	NA	NA
SQH13061.1\|1996169_1996553_-	Regulatory protein soxS	NA	NA	NA	NA
SQH13062.1\|1997232_1998606_+	Phenylalanine-specific permease	NA	NA	NA	NA
SQH13063.1\|1998683_1999259_-	Lipid A palmitoyltransferase PagP precursor	NA	NA	NA	NA
SQH13064.1\|1999645_2000443_+	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA
SQH13065.1\|2000481_2001381_-	Lipid kinase YegS	NA	NA	NA	NA
SQH13066.1\|2001841_2003221_-\|protease	Uncharacterized protease yhbU precursor	Q6DW11	Phage_TP	1.1e-180	83.0
SQH13067.1\|2003374_2004070_-	Transcriptional regulatory protein BaeR	W8CYM9	Bacillus_phage	2.4e-35	35.5
SQH13068.1\|2004069_2005461_-	Signal transduction histidine-protein kinase BaeS	W8CYF6	Bacillus_phage	6.3e-35	28.6
SQH13069.1\|2005450_2008552_-	Multidrug transporter MdtC	NA	NA	NA	NA
SQH13070.1\|2008551_2011674_-	Multidrug transporter MdtC	NA	NA	NA	NA
SQH13071.1\|2011673_2012933_-	Efflux pump periplasmic linker BepF	NA	NA	NA	NA
SQH13072.1\|2013127_2014483_-	Proline porter II	NA	NA	NA	NA
SQH13073.1\|2015106_2016927_+	Colicin-E2	NA	NA	NA	NA
SQH13074.1\|2016929_2017187_+	Microcin-E8 immunity protein	NA	NA	NA	NA
SQH13075.1\|2017267_2017531_+	Microcin-E7 immunity protein	NA	NA	NA	NA
SQH13076.1\|2017584_2019045_-	Magnesium transporter mgtE	NA	NA	NA	NA
SQH13077.1\|2019190_2020720_-	Exopolyphosphatase	NA	NA	NA	NA
SQH13078.1\|2020724_2022794_-	Polyphosphate kinase	NA	NA	NA	NA
SQH13079.1\|2022844_2023432_-	Spermidine N(1)-acetyltransferase	NA	NA	NA	NA
SQH13080.1\|2023676_2024315_-	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.9e-27	37.8
SQH13081.1\|2024314_2025355_-	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.7e-72	44.5
SQH13082.1\|2025671_2026298_+	Uracil phosphoribosyltransferase	NA	NA	NA	NA
SQH13083.1\|2026442_2027738_+	Uracil transporter	Q9KX94	Enterobacteria_phage	3.3e-62	38.0
SQH13084.1\|2027862_2028570_+	DnaA-homolog protein hda	NA	NA	NA	NA
SQH13085.1\|2028606_2028963_-	arsenate reductase	NA	NA	NA	NA
SQH13086.1\|2028972_2030436_-\|protease	Uncharacterized metalloprotease yggG	NA	NA	NA	NA

DBSCAN-SWA_3

2691930 : 2736578

Morganella_phage(22.22%)

protease,capsid,integrase,tail,lysis,portal,terminase,head

attL 2685090:2685113|attR 2747947:2747970

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2685090:2685113	attL	NA	NA	NA	NA
SQH13703.1\|2691930_2692329_-\|lysis	Bacteriophage lysis protein	NA	NA	NA	NA
SQH13704.1\|2692634_2692805_+	Uncharacterised protein	NA	NA	NA	NA
SQH13705.1\|2693719_2694268_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
SQH13706.1\|2694325_2696158_-	Excinuclease ABC subunit C	NA	NA	NA	NA
SQH13707.1\|2696124_2696814_-	Response regulator uvrY	NA	NA	NA	NA
SQH13708.1\|2697073_2697352_+	DNA-damage-inducible protein I	A0A1W6JP10	Morganella_phage	2.3e-13	45.1
SQH13709.1\|2697389_2698940_-	Uncharacterised protein	A0A1S6KUV1	Providencia_phage	2.8e-39	32.2
SQH13710.1\|2699005_2699161_-	Uncharacterised protein	NA	NA	NA	NA
SQH13711.1\|2699170_2700259_-	Uncharacterised protein	NA	NA	NA	NA
SQH13712.1\|2700255_2704587_-	Uncharacterized conserved protein	F1C571	Cronobacter_phage	1.2e-294	58.6
SQH13713.1\|2704638_2705247_-\|tail	Phage-related protein, tail component	F1C572	Cronobacter_phage	5.3e-63	62.9
SQH13714.1\|2705243_2705957_-	NlpC/P60 family	F1C573	Cronobacter_phage	1.2e-87	64.4
SQH13715.1\|2705953_2706697_-\|tail	phage minor tail protein L	G8C7J7	Escherichia_phage	5.1e-84	57.4
SQH13716.1\|2706693_2707029_-	Phage-related protein	K7P7R1	Enterobacteria_phage	2.5e-38	63.0
SQH13717.1\|2707031_2710340_-\|tail	Phage-related minor tail protein	A0A1P8DTH2	Proteus_phage	5.5e-154	34.0
SQH13718.1\|2710378_2710798_-	Uncharacterised protein	NA	NA	NA	NA
SQH13719.1\|2710838_2711126_-	Uncharacterised protein	A0A1P8DTH5	Proteus_phage	1.1e-15	48.4
SQH13720.1\|2711149_2711524_-\|tail	Phage tail assembly chaperone	F1C576	Cronobacter_phage	3.4e-20	46.0
SQH13721.1\|2711516_2712002_-	Uncharacterised protein	A0A1W6JP06	Morganella_phage	1.4e-53	69.3
SQH13722.1\|2712062_2712398_-	Protein of uncharacterised function (DUF3168)	A0A1P8DTJ3	Proteus_phage	2.5e-30	59.1
SQH13723.1\|2712394_2712844_-	phage protein, HK97 gp10 family	A0A1W6JP15	Morganella_phage	1.5e-43	62.6
SQH13724.1\|2712836_2713166_-\|head,tail	Bacteriophage head-tail adaptor	A0A1W6JP44	Morganella_phage	1.3e-36	70.8
SQH13725.1\|2713162_2713465_-\|head,tail	Phage gp6-like head-tail connector protein	K7PKV5	Enterobacterial_phage	5.5e-37	70.4
SQH13726.1\|2713501_2714674_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	F1C582	Cronobacter_phage	4.8e-169	77.5
SQH13727.1\|2714677_2715346_-\|head,protease	phage prohead protease, HK97 family	K7PM91	Enterobacterial_phage	2.9e-86	68.5
SQH13728.1\|2715363_2716632_-\|portal	phage portal protein, HK97 family	K7PGQ9	Enterobacteria_phage	4.6e-202	80.7
SQH13729.1\|2716631_2718368_-\|terminase	Phage terminase-like protein, large subunit	A0A0U2C138	Paracoccus_phage	2.7e-144	45.6
SQH13730.1\|2718321_2718789_-\|terminase	Phage terminase, small subunit	Q9B019	Phage_GMSE-1	2.1e-43	57.8
SQH13731.1\|2718903_2719110_-	Uncharacterised protein	A0A1W6JP16	Morganella_phage	4.9e-13	56.2
SQH13732.1\|2719446_2720016_-	Uncharacterised protein	NA	NA	NA	NA
SQH13733.1\|2720826_2721039_+	Uncharacterised protein	NA	NA	NA	NA
SQH13734.1\|2721210_2721588_-	Uncharacterised protein	NA	NA	NA	NA
SQH13735.1\|2721636_2722206_-	Phage-related lysozyme (muraminidase)	A0A1W6JNW4	Morganella_phage	7.2e-54	63.4
SQH13736.1\|2722186_2722414_-	Lysis protein S	A0A0P0ZC45	Stx2-converting_phage	8.1e-17	75.8
SQH13737.1\|2722510_2722861_-	Uncharacterised protein	NA	NA	NA	NA
SQH13738.1\|2723339_2724386_-	Modification methylase DpnIIB	A0A1W6JP25	Morganella_phage	4.3e-145	71.1
SQH13739.1\|2724529_2724727_-	Uncharacterised protein	A5LH80	Enterobacteria_phage	1.3e-07	51.8
SQH13740.1\|2724933_2725266_-	Uncharacterised protein	NA	NA	NA	NA
SQH13741.1\|2725437_2726217_-	Antitermination protein	F1C595	Cronobacter_phage	1.0e-66	48.4
SQH13742.1\|2726213_2726771_-	Protein of uncharacterised function (DUF968)	A0A1W6JP62	Morganella_phage	1.5e-48	56.9
SQH13743.1\|2726767_2727142_-	Crossover junction endodeoxyribonuclease rusA	K7PH72	Enterobacteria_phage	1.1e-31	57.1
SQH13744.1\|2727138_2728125_-	Uncharacterized protein conserved in bacteria	A0A286N2Q0	Klebsiella_phage	4.7e-101	55.3
SQH13745.1\|2728121_2729687_-	Hef nuclease	A0A286N2P9	Klebsiella_phage	8.8e-211	68.2
SQH13746.1\|2729933_2730212_-	Uncharacterised protein	A0A1B5FPB9	Escherichia_phage	6.9e-18	55.7
SQH13747.1\|2730180_2730402_-	Uncharacterised protein	Q8W647	Enterobacteria_phage	1.0e-19	66.7
SQH13748.1\|2730561_2731170_+	Uncharacterized HTH-type transcriptional regulator CBU_1416	Q8W648	Enterobacteria_phage	1.4e-39	43.9
SQH13749.1\|2731302_2731755_+	Helix-turn-helix	NA	NA	NA	NA
SQH13750.1\|2731758_2731983_+	Uncharacterised protein	NA	NA	NA	NA
SQH13751.1\|2731975_2732242_+	Uncharacterised protein	S4TU79	Salmonella_phage	8.3e-21	51.6
SQH13752.1\|2732373_2732766_+	Uncharacterised protein	NA	NA	NA	NA
SQH13753.1\|2732795_2733218_+	Uncharacterised protein	NA	NA	NA	NA
SQH13754.1\|2733289_2733652_+	Uncharacterised protein	NA	NA	NA	NA
SQH13755.1\|2733626_2734199_+	Uncharacterised protein	NA	NA	NA	NA
SQH13756.1\|2734211_2734433_+	Uncharacterised protein	NA	NA	NA	NA
SQH13757.1\|2734429_2734678_+	Uncharacterised protein	NA	NA	NA	NA
SQH13758.1\|2734837_2735155_+	Uncharacterised protein	NA	NA	NA	NA
SQH13759.1\|2735151_2735361_+	Uncharacterised protein	H6WRW8	Salmonella_phage	2.5e-12	54.4
SQH13760.1\|2735375_2736578_-\|integrase	Putative prophage CPS-53 integrase	H6WRW7	Salmonella_phage	8.5e-113	49.1
2747947:2747970	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2941375 : 2958099

Morganella_phage(53.85%)

integrase

attL 2944168:2944181|attR 2953640:2953653

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH13949.1\|2941375_2941813_-	Conjugal transfer repressor	A0A1W6JPI6	Morganella_phage	6.0e-16	65.2
SQH13950.1\|2941812_2942127_-	Uncharacterised protein	NA	NA	NA	NA
SQH13951.1\|2942591_2945285_-	DNA primase TraC	A0A1W6JPG0	Morganella_phage	0.0e+00	64.5
2944168:2944181	attL	NA	NA	NA	NA
SQH13952.1\|2945281_2945626_-	Uncharacterised protein	A0A1W6JPD8	Morganella_phage	5.1e-47	74.6
SQH13953.1\|2945640_2946237_-	Uncharacterised protein	A0A1B5FPB4	Escherichia_phage	1.5e-22	36.9
SQH13954.1\|2946236_2946431_-	Uncharacterised protein	NA	NA	NA	NA
SQH13955.1\|2946430_2946604_-	Uncharacterised protein	NA	NA	NA	NA
SQH13956.1\|2946600_2947185_-	ORF6N domain	A0A1B5FPC0	Escherichia_phage	3.1e-28	58.0
SQH13957.1\|2947181_2947391_-	Uncharacterised protein	A0A1W6JPF1	Morganella_phage	2.0e-09	47.8
SQH13958.1\|2947387_2947567_-	Uncharacterised protein	NA	NA	NA	NA
SQH13959.1\|2947563_2947824_-	Uncharacterised protein	NA	NA	NA	NA
SQH13960.1\|2947826_2948000_-	Uncharacterised protein	NA	NA	NA	NA
SQH13961.1\|2947992_2948952_-	Uncharacterised protein	A0A1W6JPK3	Morganella_phage	9.7e-27	34.0
SQH13962.1\|2948951_2949548_-	Uncharacterized phage-encoded protein	A0A1W6JPH8	Morganella_phage	5.6e-73	69.2
SQH13963.1\|2949560_2949956_-	Uncharacterised protein	A0A1W6JPH9	Morganella_phage	3.5e-31	53.2
SQH13964.1\|2949955_2950174_-	Predicted transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	3.0e-08	49.1
SQH13965.1\|2950298_2951069_-	Uncharacterised protein	NA	NA	NA	NA
SQH13966.1\|2951061_2951862_-	Uncharacterised protein	NA	NA	NA	NA
SQH13967.1\|2952075_2953287_-\|integrase	Putative prophage CPS-53 integrase	Q7M297	Enterobacteria_phage	3.1e-139	61.1
SQH13968.1\|2953732_2954062_+	Sulfurtransferase TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	6.1e-21	50.0
2953640:2953653	attR	NA	NA	NA	NA
SQH13969.1\|2954069_2954348_-	Acylphosphatase	NA	NA	NA	NA
SQH13970.1\|2954604_2954925_+	Heat shock protein hspQ	NA	NA	NA	NA
SQH13971.1\|2954993_2955407_-	acetyl coenzyme A synthetase (ADP forming), alpha domain	NA	NA	NA	NA
SQH13972.1\|2955521_2955980_+	Methylglyoxal synthase	NA	NA	NA	NA
SQH13973.1\|2956044_2958099_-	Helicase IV	A7KV33	Bacillus_phage	2.3e-17	25.9

DBSCAN-SWA_5

3276532 : 3282982

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH14278.1\|3276532_3276991_-	Methylated-DNA--protein-cysteine methyltransferase, constitutive	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.3e-18	40.8
SQH14280.1\|3277278_3277506_+	Glutaredoxin-like protein nrdH	V5UN81	Mycobacterium_phage	6.9e-16	50.7
SQH14282.1\|3277514_3277928_+	ribonucleotide reductase stimulatory protein	A0A142F1R4	Bacillus_phage	3.1e-14	42.4
SQH14283.1\|3277938_3280071_+	Ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.3e-209	52.3
SQH14285.1\|3280084_3281056_+	Ribonucleoside-diphosphate reductase subunit beta nrdF2	R4TBI6	Mycobacterium_phage	3.9e-132	71.8
SQH14287.1\|3281779_3282982_+	Glycine betaine/L-proline transport ATP-binding protein ProV	G3M9Y6	Bacillus_virus	5.8e-29	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483422

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection