CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483426	Kingella kingae strain NCTC10529 genome assembly, chromosome: 1	1 crisprs	DEDDh,cas2,cas1,cas9,csa3,c2c9_V-U4,DinG,cas3	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483426_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483426_1

1876697-1876773

Orphan

Consensus_repeat	Method
TAATCTAAATTTAATTCACTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483426_1

>merge|LS483426|1|1876697-1876773|CRISPRCasFinder
TAATCTAAATTTAATTCACTATATTCGTACACGGCGGTCGTTGTCGCCTTGTCATAATCTAAATTTAATCCACTATA

>LS483426|1|1|1876697-1876773|CRISPRCasFinder
TAATCTAAATTTAATTCACTATA	TTCGTACACGGCGGTCGTTGTCGCCTTGTCA
TAATCTAAATTTAATCCACTATA

Protein	Signature genes	Signature genes Name	Protein_function
LS483426.1\|SQH25758.1\|1869849_1870314_+\|Biotin-carboxyl-carrier-protein-of-acetyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|235777
LS483426.1\|SQH25765.1\|1877900_1878683_+\|LigB-family-dioxygenase	unknown	unknown	gnl\|CDD\|153375
LS483426.1\|SQH25771.1\|1885901_1887179_-\|Nitrogen-assimilation-regulatory-protein	unknown	unknown	gnl\|CDD\|225114
LS483426.1\|SQH25756.1\|1867300_1868722_+\|Trk-system-potassium-uptake-protein-trkA	unknown	unknown	gnl\|CDD\|236541
LS483426.1\|SQH25768.1\|1882967_1883636_+\|Beta-phosphoglucomutase	unknown	unknown	gnl\|CDD\|213672
LS483426.1\|SQH25769.1\|1883837_1884695_+\|Inner-membrane-protein-yedI	unknown	unknown	gnl\|CDD\|377542
LS483426.1\|SQH25754.1\|1864827_1865868_-\|Probable-ABC-transporter-permease-protein-HI_1471	unknown	unknown	gnl\|CDD\|376439
LS483426.1\|SQH25770.1\|1884790_1885819_-\|Tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
LS483426.1\|SQH25772.1\|1887184_1889314_-\|Sensor-protein-kinase-walK	unknown	unknown	gnl\|CDD\|227333
LS483426.1\|SQH25773.1\|1889469_1890099_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|373018
LS483426.1\|SQH25767.1\|1880700_1882965_+\|Kojibiose-phosphorylase	unknown	unknown	gnl\|CDD\|237517
LS483426.1\|SQH25761.1\|1872476_1872845_-\|Putative-effector-of-murein-hydrolase-LrgA	unknown	unknown	gnl\|CDD\|224298
LS483426.1\|SQH25755.1\|1866045_1867149_-\|Vitamin-B12-binding-protein-precursor	unknown	unknown	gnl\|CDD\|238559
LS483426.1\|SQH25763.1\|1875776_1876493_-\|Leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
LS483426.1\|SQH25759.1\|1870359_1871721_+\|Biotin-carboxylase	unknown	unknown	gnl\|CDD\|236307
LS483426.1\|SQH25764.1\|1876800_1877787_-\|Fructose-1,6-bisphosphatase-class-1	unknown	unknown	gnl\|CDD\|236458
LS483426.1\|SQH25766.1\|1879035_1880382_+\|sucrose/H+-symporter	unknown	unknown	gnl\|CDD\|340871
LS483426.1\|SQH25762.1\|1872991_1875577_-\|Aconitate-hydratase-2	unknown	unknown	gnl\|CDD\|236424
LS483426.1\|SQH25760.1\|1871787_1872480_-\|Inner-membrane-protein-yohK	unknown	unknown	gnl\|CDD\|377236
LS483426.1\|SQH25757.1\|1868837_1869623_+\|23S-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640

Protein	Function_ID	Function_description	E-value
LS483426.1\|SQH25758.1\|1869849_1870314_+\|Biotin-carboxyl-carrier-protein-of-acetyl-CoA-carboxylase	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	9.06797e-72
LS483426.1\|SQH25765.1\|1877900_1878683_+\|LigB-family-dioxygenase	gnl\|CDD\|153375	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.	1.30245e-105
LS483426.1\|SQH25771.1\|1885901_1887179_-\|Nitrogen-assimilation-regulatory-protein	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	8.34795e-108
LS483426.1\|SQH25756.1\|1867300_1868722_+\|Trk-system-potassium-uptake-protein-trkA	gnl\|CDD\|236541	PRK09496, trkA, Trk system potassium transporter TrkA.	0
LS483426.1\|SQH25768.1\|1882967_1883636_+\|Beta-phosphoglucomutase	gnl\|CDD\|213672	TIGR01990, bPGM, beta-phosphoglucomutase. This model represents the beta-phosphoglucomutase enzyme which catalyzes the interconverison of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha <-> beta) while the 1-phosphate is not. A separate enzyme is responsible for the isomerization of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorylysis of maltose (2.4.1.8), trehalose (2.4.1.64) or trehalose-6-phosphate (2.4.1.216). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterized by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold. beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily. The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes (TIGR01509). The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	2.51854e-93
LS483426.1\|SQH25769.1\|1883837_1884695_+\|Inner-membrane-protein-yedI	gnl\|CDD\|377542	pfam05661, DUF808, Protein of unknown function (DUF808). This family consists of several bacterial proteins of unknown function.	1.31082e-131
LS483426.1\|SQH25754.1\|1864827_1865868_-\|Probable-ABC-transporter-permease-protein-HI_1471	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.60108e-70
LS483426.1\|SQH25770.1\|1884790_1885819_-\|Tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	3.8204e-112
LS483426.1\|SQH25772.1\|1887184_1889314_-\|Sensor-protein-kinase-walK	gnl\|CDD\|227333	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].	0
LS483426.1\|SQH25773.1\|1889469_1890099_-\|Uncharacterised-protein	gnl\|CDD\|373018	pfam14334, DUF4390, Domain of unknown function (DUF4390). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 192 and 203 amino acids in length.	6.9246e-36
LS483426.1\|SQH25767.1\|1880700_1882965_+\|Kojibiose-phosphorylase	gnl\|CDD\|237517	PRK13807, PRK13807, maltose phosphorylase; Provisional.	0
LS483426.1\|SQH25761.1\|1872476_1872845_-\|Putative-effector-of-murein-hydrolase-LrgA	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	4.2851e-25
LS483426.1\|SQH25755.1\|1866045_1867149_-\|Vitamin-B12-binding-protein-precursor	gnl\|CDD\|238559	cd01139, TroA_f, Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	2.95723e-92
LS483426.1\|SQH25763.1\|1875776_1876493_-\|Leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.18265e-89
LS483426.1\|SQH25759.1\|1870359_1871721_+\|Biotin-carboxylase	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
LS483426.1\|SQH25764.1\|1876800_1877787_-\|Fructose-1,6-bisphosphatase-class-1	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	4.97385e-166
LS483426.1\|SQH25766.1\|1879035_1880382_+\|sucrose/H+-symporter	gnl\|CDD\|340871	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters. This group includes the solute carrier 45 (SLC45) family as well as plant sucrose transporters (SUCs or SUTs) and similar proteins such as Schizosaccharomyces pombe general alpha-glucoside permease. the SLC45 family is composed of four (A1-A4) vertebrate proteins as well as related insect proteins such as Drosophila sucrose transporter SCRT or Slc45-1. Members of this group transport sucrose and other sugars like maltose into the cell, with the concomitant uptake of protons (symport system). Plant sucrose transporters are crucial to carbon partitioning, playing a key role in phloem loading/unloading. They play a key role in loading and unloading of sucrose into the phloem and as a result, they control sucrose distribution throughout the whole plant and drive the osmotic flow system in the phloem. They also play a role in the exchange of sucrose between beneficial symbionts (mycorrhiza and Rhizobium) as well as pathogens such as nematodes and parasitic fungi. There are nine sucrose transporter genes in Arabidopsis and five in rice. Vertebrate SLC45 family proteins have been implicated in the regulation of glucose homoeostasis in the brain (SLC45A1), with skin and hair pigmentation (SLC45A2), and with prostate cancer and myelination (SLC45A3). Mutations in SLC45A2, also called MATP (membrane-associated transporter protein) or melanoma antigen AIM1, cause oculocutaneous albinism type 4 (OCA4), an autosomal recessive disorder of melanin biosynthesis that results in congenital hypopigmentation of ocular and cutaneous tissues. The SLC45 family and related sugar transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.43353e-102
LS483426.1\|SQH25762.1\|1872991_1875577_-\|Aconitate-hydratase-2	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
LS483426.1\|SQH25760.1\|1871787_1872480_-\|Inner-membrane-protein-yohK	gnl\|CDD\|377236	pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance.	2.45554e-67
LS483426.1\|SQH25757.1\|1868837_1869623_+\|23S-rRNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	1.25904e-63

>LS483426.1|SQH25763.1|1875776_1876493_-|Leucyl/phenylalanyl-tRNA--protein-transferase
MLTLIDPDNPHFPKLNPSNTPQDGLIAASEIITPNMVQAAYRNGLFSWLKAHGYWLWFTQHPRAVIFPNQLHIGHNLRKALRQQRYQVSVNRAFDDVIRACSTVPRAGQNGTWINHDIIQTYGALHQQGKAHSFECWYPDHAGSLHLAGGFYGVQIGCVFYGESMFCQHDNASKIAFAHAVPYLRDCGIALIDCQQDTDHMCRFGSQLLPIDQYCRLLLDLNDQPLNQSIQAINIAQN
>LS483426.1|SQH25762.1|1872991_1875577_-|Aconitate-hydratase-2
MLQEYRQAAAERAALGIPALPLTAAQMADLADLLKNPPAGEGEFLVDLLTNRVPAGVDDAAKVKASFLAAIADGSVTSPLVSPELAAKLLGTMLGGYNIHPLIELLDNEKLAPIAAEGLKHTLLMFDSFHDVKEKADKGNAHAKAVLQSWADAEWFTSRQAVPEKITVTVFKVDGETNTDDLSPAPDAWSRPDIPLHALAMLKNPRDGITPDKAGEVGPIKLLEELKAKGNLVAYVGDVVGTGSSRKSATNSVIWHTGEDIPFVPNKRFGGVCLGGKIAPIFFNTQEDSGALPIEVDVSSLKMGDVVDIFPYEGKIVKNGETVSTFELKSQVLLDEVQAGGRINLIIGRGLTAKAREALGLPASDKFRLPQAPAASNAGFTLAQKMVGRACGLPEGKGVRPGTYCEPRMTTVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHKELPEFISTRGGVSLRPGDGVIHSWLNRLLMPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFSGSLQAGVTLRDLVNAIPLYAIKQGLLTVAKAGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTVKLNQEPIIEYMKSNIVLMKNMIADGYADARTLERRIKTMEAWIANPQLLEADKDAEYAAVIEINMDDIKEPIIACPNDPDDVCFMSEKSGTKIDEVFIGSCMTNIGHFRAASKLLEGKADTPVRLWIAPPTKMDAKQLSDEGHYGVLGRAGARMEMPGCSLCMGNQAQVREGATVMSTSTRNFPNRLGKNTNVFLGSAELAAICSKLGKIPTVEEYQANIGIINENGDKIYKYMNFNEIAEYNDVAESVNV
>LS483426.1|SQH25761.1|1872476_1872845_-|Putative-effector-of-murein-hydrolase-LrgA
MIRSLSIILGCLALGELIIYLTHIKLPSGIIGLLILFGLLQGKWVKPDWFKPITDFLMQNLMLILIAPCVALVQYLDLLSKDIGAIFVSAVGSSVLVLLATAKTYEWARKKFSQNNKKGKSA
>LS483426.1|SQH25760.1|1871787_1872480_-|Inner-membrane-protein-yohK
MKTSFASNSFLLLFMLVSLYWLCIVIRKRTGSPFVNPVLICTTIFIIYLKVTDTPYADFQKTGQLVSVWLQPAIVCLAVPLYLQWQKIRAQWLSILLSQLAGSVVGVVSGVWIAHFMGAAREVSMAVAAKSVTLPIALEITQVLGGIPSISAAGVILAGLTGQMFGFMLMKNWTKNPIAKSLAQGTTSHAMGIVACLEKSGHFAAYATVGLILNGVITSLIAPLIVPFLI
>LS483426.1|SQH25759.1|1870359_1871721_+|Biotin-carboxylase
MLKKVLIANRGEIALRILRACREMGIATVAVHSEADRESLHVKLADESVCIGPAPSPQSYLNIPALIAAAEVTGSDAIHPGYGFLAENANFAEQVEKSGFIFIGPKADTIRLMGDKVSAKHAMIAAGVPCVPGSDGALPDNPDEILKIADKVGFPVIIKASGGGGGRGMRVVEKKEDLLKSVEMTKAEAEAAFGNPMVYMERFLQRPRHVEIQVLADEHGNAIYLGERDCSMQRRHQKIIEEAPAPFITPTEREKIGTACADACKRIGYRGAGTFEFLYEDGEFFFIEMNTRVQVEHPVTELITGVDIVQEQLRVAAGLPLQYAQSDIVIEGHAFECRINAEDPYNFIPSPGKIESCHLPGGLGVRVDSHIYQGYRIPPNYDSLIGKICVHGKDRDQAIAKMRVAMDELAVTGIKTNAPLHRDLFRDAGFIQGGVSIHYLEHWLQERKEKQAK
>LS483426.1|SQH25758.1|1869849_1870314_+|Biotin-carboxyl-carrier-protein-of-acetyl-CoA-carboxylase
MDLRKLQKLIELVEGSGIAELEITEGEEKVRITRSVAAPTVQTVYAPAPVAAPQVAPAVAAPVAAPATPSAPAAADTTNAQKSPMVGTFYRAASPTAAPFVEVGATVKEGQTICIIEAMKLMNEIEAEKSGVIKAILVENGQPVEYGEPLFIIE
>LS483426.1|SQH25757.1|1868837_1869623_+|23S-rRNA-methyltransferase
MNPVIQSPQNNQLKHLAKLLSASKHRREHQQTVLEGVHLLSAYLDAGNTPEQVYVPEHRAQSPEIAALLCRLPANRVHLVSHNALRKISSLADANDIMALIALPQPSPLPEQGDCVVLERIQDAGNVGAVLRSAAAAGIVHIILSDGCADAYAPKVLRAGMGAHFLLHIHERVDLTQWRSQYHDRVLVTALSEHNNFSLYDLTLQQPSAWIFGNEGSGVSPQIQNIATANVKIPMLGATESLNIAQAATVCLFEQMRQRLK
>LS483426.1|SQH25756.1|1867300_1868722_+|Trk-system-potassium-uptake-protein-trkA
MKIIILGSGQVGSTIAHELASMPNHDVTIIDTDETALRNISSRLDVQTMIGNGASPQLLERAGAHDTDMLLALTRSDETNLVACKLAAELFNIPQRIARVRLADYLEYGREQTDLATLDDELSSSLNAFAVTDSIHPEHLVTEHLIGLLSYARALQVLPFAGDQVRMIIVQVKAEDEIVGKTLEEVMTMLPEHSDCQICAIYRSTRMIVPQPSTVILEGDEICFVADAQYMATVMYVLFHYKQSNHRIMIAGGGSIGYRLAKHMEDKFNVKIIEYNENRAEWLAENLDNALVLHGSATDEDLLNREYIDEIDVFCALTNDDENNIMAGLLAKNLGAKRVISIINRSRYVDLLTGNQIDIVVSPHQITIGSVLSHVRRGDIAAVYPLRRGTAEAIEVVVHGDKHTSALVGRRVDEVKWPAGCHIAAIVRGDEVIMGRDHSQTLHDGDHIVFFVSRRRVLRELEKLIQVKMGFFG
>LS483426.1|SQH25755.1|1866045_1867149_-|Vitamin-B12-binding-protein-precursor
MKRSFSAVATAMALALSSALATAAPVEVTDILNRKVKVDLPAKRVVLGFYYQDYMAVGGNKALDNVVGFSKKVWSGWAPPSWELFSKAVPKLNQLTDVGEVEEGTFSIEKVLALKPDLLILADWQYKALGSDLDKLKNANIPIVVLDYNAQTVAKHVQSTKLLGQLTGQTARANQIANEYQAAVRQIQTRVQQARLPKPKVYVEFGRGGPAEQGFTFSSSMWGPMIDLVGAQNVAPKSIGAWGAMTAEAVLAAKPDVVIMTGRETELNKNREGMVLGFNIPKDEAQRRLNGFKARAGWSALPAVKNNRVYGAYHANSRTMSDIASVQFVAKAAYPTLFKDINPEKTYTDFYRKYLPVVPTGTLYLYP
>LS483426.1|SQH25754.1|1864827_1865868_-|Probable-ABC-transporter-permease-protein-HI_1471
MTNSTQITEIVRQQRAVERKRWLVLIAFAAVGLIGLVLDVVTGPSMLPVGEVVKSLLGAADVDEMTHTIVHDLRLPIALMALVVGAALGAGGAEIQTLLNNPMASPYTLGLAAAAGFGASLVIAFGSFGLSLQYAVPVGAFTMTMLAAVVLFLFASMQRFGSATLVLVGIALLFIFQSMLSLVQFISAPEISQQILFWLFGSLTKATWENLTVISVVSAVCISLLLRDAWKLTAVRLGEDRAAALGVNLTALRIKTLVLVAMMTATAISFVGVIGFIGLVAPHVARMLVGEDQRFFLPVTILAGAAFLSVSSVLSKVIIPGALFPVGIVTSFVGVPFFFWIIWSKR
>LS483426.1|SQH25764.1|1876800_1877787_-|Fructose-1,6-bisphosphatase-class-1
MQTLTHYLQQHSQQYVIAPELISTVGSIVAACTQISRHVRLGALSGVLGEAGTGNIQGEAQKKLDVLANQILIDTLRDNANVAGIASEEEDDFVATSEQGGYLVLFDPLDGSSNIDVNISIGTIFSVLAKPAGSLHTQSFLQAGSKQVAAGYVLYGVQTILVLTFKHGVAAFTLNEQGEFIQTQAALQVPTQTAEFAINMSNQRHWEQPIQQYIGELLAGKDGVRGKNYNMRWVASMVAEVHRILTRGGVFLYPKDNRDPSKAGKLRLMYEANPLGLVVEQAGGKITNARENMLQIQPTGLHQRVAVVLGSVEEVDKVQTLHSGLSSN
>LS483426.1|SQH25765.1|1877900_1878683_+|LigB-family-dioxygenase
MQSNPNKKQPALFLGHGSPMNMLRPELDINQNITRIAQTFAKPKAIVCVSAHWYDGLWITGAAQPDTIYDFYGFPEALYQQNYPAAGSPELAQQLCDLLPEAQIHPTRGLDHGAWAVLKFLSPQADVPVVQLGLDLSQPPQWHYEQAQRLRVLREQGVLIVGSGNIVHNLRAAQRTDHAPAYDWAEQFLAHINHAIEYRQHDNIINYHQFGDVARLSVPTPEHLLPLLYVLAQQDDSDRVALFNNQMDMGSISMTSVLLH
>LS483426.1|SQH25766.1|1879035_1880382_+|sucrose/H+-symporter
MATDNQTPTKQGLPTLSKNTIWMMSFGFLGVQTAFTLQSSQMSRIFQTLGADPHSLGWFFILPPLAGMIVQPIVGHFSDRTWSPRLGGRRLPYLIYGSLIAVIVMLLIPNSGSLGLSYAMALMFGALMIALLDVSSNMAMQPFKMMVGDMVNEEQKSYAYGIQSFLANTGGIVASILPFLFAIIGLSNVAEKGVVPQTVVVSFYVGAALLIVTSALTVFKVKEYDPETYARYHGIDVKANEEKVSWIELLKRAPKAFWTVSFTQFFCWFAFQYLWTYSAGAIAANVWNATDAASAGYQEAGNWFGVLAAVQSVAAVACSYVLAKIPNQYHKQSYFGCLALGALGFLSIAFATNQYLLIVSFILVGIAWAGILTYPLTIVTNALSGKHTGTYLGLFNTSICLPQIVASLLSFALFPMLGGVQANMFIMAGIVLLLGAFSVFLIKETHGN
>LS483426.1|SQH25767.1|1880700_1882965_+|Kojibiose-phosphorylase
MYLRIMDVLPWAIRSTKLEKEHKRLQESLTSIGNGYMGMRGNFEETYSADSHLGTYIAGVWFPDKTRVGWWKNGYPKYFGKAINALNFSKVAIFVDNQEVDLAKNEVANFAIELDMKTGVFRRQFTVFGVKFAITKFLSVAQKELAAIRWEMVAVDGKTHEVRINSMIDADVKNEDSNYEEKFWQVLAREVNAETSAIATQTVANPFGVEQFIVNAEQHFAGDFNVSSSQEQDWQVSNEFSGSVGSETQFFEKRVIITTSRDYADLEAVQKAGRELSEKVAKQSFADLLAAHKAGWLKRWESADVVISGNNEAQQGIRFNLFQLFATYYGEDARLNIGPKGFTGEKYGGATYWDTEAYAVPLYLALAEPQVTRNLLKYRHNQLPQAKHNAGQQGLAGALYPMVTFTGVECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDESYLAKEGLEVLVEISRFWADRVHFSNRHGKYMMHGVTGPNEYENNINNNWYTNNLAAWVLEYTSAALAKYPRPDLNVSAEELAKWADIIANMYRPFDAELNVFVQHDGFLDKDLRPVSALSKDDLPLNQKWSWDKILRSPFIKQADVLQGIYFFGDRFTLDEKRRNFDFYEPMTVHESSLSPSIHAILAAELGKEEKAVEMYQRTARLDLDNYNNDTEDGLHITSMTGSWLGIVQGFAQMKTWGGKLSFAPFLPSVWTGYAFHINYRGRLIKVTVDSANVKLNLLKGDALKLSVYGQEVELQSEFVTALQRGE
>LS483426.1|SQH25768.1|1882967_1883636_+|Beta-phosphoglucomutase
MTFEAVLFDLDGVITDTAEYHFLAWQKLAEELGISIDRQFNEQLKGVSRDDSLKRILVHGNKTVSPEEFKQLTEHKNANYLTMIEAVSPNDVYAGILDLLKALRASGKKIALASASKNGPKLLQQMQLTEYFDCIADPAKIAQSKPAPDIFLAAAAGVDVAIENCIGIEDAAAGVAAIKAAGALPIGVGKASDLGDDIAIVADTSFLTLNYLENVWQSAKYS
>LS483426.1|SQH25769.1|1883837_1884695_+|Inner-membrane-protein-yedI
MAFASLFTLLDDIASVLDDVALMTKMAAKKTAGVVGDDLALNANQVTGVQADRELPIVWAVAKGSLINKVILIPIALLLSIFLPKLITPLLMIGGAYLCFEGVEKLLHKFLHHHEEAHEATHIPDSLDSEKDKIKGTIRTDFILSAEIIIIALGVVQESTLMVKIFALSAVGIGITIFVYGLVAMIVKADDVGLYLMQAASSGKRAIGRMIIAIMPWVMRALAFVGTLAMFLVGGGIFTHNIDALHHIQWSNALIATGFDLVVGLIVGVICCAVILPLSKRLAVK
>LS483426.1|SQH25770.1|1884790_1885819_-|Tetraacyldisaccharide-4'-kinase
MKLHQLIEQHWQTPNPILRVLLTPLSRLFALIAQHRRQRYQHNPHKIQKLPVPVVIVGNIHAGGTGKTPITAALVRGLQQRGVRVGIISRGYGRQSSEIYVLHAHSQAADVGDEPLMLYRQTAAPMAVGANRYVTGQALLAHYPDIQLLVADDGLQHYALHRDMEIGVFPAADLRRLSELDVLPNGSLREPIARLGELDGVVLSQANADDITWAQEQTVFPHDLFASSVVCGAPYRFNQANEKLDPSSLHPNQTCVAVAGIARPERFFQSLRDMGIELAQTLALADHAVLSLDDLPAADYVLITEKDAVKLPTHAPDCIWVLPIEARIEPDLADWVCAKLGL
>LS483426.1|SQH25771.1|1885901_1887179_-|Nitrogen-assimilation-regulatory-protein
MKSTDILIVDDEIGIREVLQETLEDEGYTVAVAENAEEARKLRIKTRPSLVLLDIWMPDSDGITLLKEWATNGLLTMPVVMMSGHGSIDTAVEATKIGALDFLEKPIPLQKLLQTVERALKYGESQTQAPITANNLGSSAVIKELNKQLELAYRHNNAVLLLGEAGCPFETVARTFHKNNTPWVEAHKPEHISSMPLDLLEKASGGILYLGDISQYDKCILQSMGVILGKAERFNVRIVCCSSTPVNEWLNVQSDTRLSNLLSGAVISLPPLRHQIEDIPFLAGQILRELSSSLQEETHVKFTSAAYNRLRQYDWPGNLEQFRNVIKSLALNCEGNEVHDGAVTRVLSQFNQNETAQEVKGGFNFNLPLRELREELERRYFEFHIQQENHNMSRVAQKVGLERTHLYRKLKQLGISFTRRGGEKE
>LS483426.1|SQH25772.1|1887184_1889314_-|Sensor-protein-kinase-walK
MRRFLIFCGIASFAVLYLLTFSTDSDSRFAPYFWWIAVAAALLASMLFTVIVRYIWLILSDKNNQVFGSVIARKLSGMFTLVAALPAIFLLGVAAQFIAYSIDSWFGNDTKEALERSLKLSQSALNNAAQHSMVQAASVRAHVLTAVMQQNDVAPALNTTEAREFAHLAVWNLDTRQPLVERNPNQFTPPELDESSLHKIHQSDTHHSIESINHTLYTNGWLLLPKYNHQQYALFFRQAVPQQVAQDAELIEAARSKYAELAFAQKGLQTFFLVTLLIAALLAILLAIAAALYFARRFVEPIVQLADGAREVAQGNFQRRLHIIRQDELGKLTLLFNHMSEQLAIAKQADEQHRQEQEAARHYLERVLDSLSAGVITLDSAGCLNTYNRSAETILDCSLSAILGQNPQDWAQQSPQYHALNQALTPLIESENANKAIELTYLAQDESRILLGKAVRLPAENGNGLVLVFDNITTLVQAQKEAAWGEVAKRLAHEIRNPLTPIQLSAERLAWKLRDKLSDPDVQTLDKSTNTIIKQVAALKEMVEAFRNYARAPSIRLKPVDLNVLIGEVLVLYESVPCTFHTELSNIPMWLNADTTAMRQVLHNLFKNAAEAAESDVKPQVWVSTQIQNEQIHISVSNNGKSFSHEMLQAAFEPYKTDKSNGTGLGLAVVKKIVEDHNGRITLHNRAEGGACLNLYFPFVANLTEPSEK
>LS483426.1|SQH25773.1|1889469_1890099_-|Uncharacterised-protein
MRLFTKNNVLAKPKQPALFWGAGCLRVFVLMIGLMTLPIAHAENIQSTRREAQILPNGQLAISTRFATELPEQLTDALQQGVSLDFELSYQLERPTFASYRSKITQLVSNENRVNYRLSYHPLTSRYRVSVGTFSTEYSSLTTALKAVGAIANWRTLKQGTLLNATPSDVEASVRLSLSVSKLPKPFQINAITSRGWNLDSGWQDLIIR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

96075 : 104203

Brevibacillus_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH23949.1\|96075_96960_-	Tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	5.1e-22	26.1
SQH23950.1\|97135_98143_-	Ornithine carbamoyltransferase, catabolic	NA	NA	NA	NA
SQH23951.1\|98363_99245_+	NTE family protein rssA	A0A1V0SKV5	Klosneuvirus	2.1e-07	28.2
SQH23952.1\|99307_100273_+	PhoH-like protein	H6X2N1	Pseudomonas_phage	1.4e-46	47.6
SQH23953.1\|100495_100669_+	Predicted membrane protein	NA	NA	NA	NA
SQH23954.1\|100693_101023_+	Uncharacterised BCR, YnfA/UPF0060 family	A0A218MNG8	uncultured_virus	7.2e-22	50.0
SQH23955.1\|101179_102652_+\|protease	Probable CtpA-like serine protease	A0A0R6PIZ1	Moraxella_phage	4.2e-21	27.7
SQH23956.1\|102832_104203_-	ATP-dependent RNA helicase rhlE	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.0e-53	33.8

DBSCAN-SWA_2

623497 : 681290

Burkholderia_phage(12.5%)

tail,head,protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH24477.1\|623497_625243_+\|protease	Predicted protease with the C-terminal PDZ domain	NA	NA	NA	NA
SQH24478.1\|625396_625834_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQH24479.1\|625963_626257_-	Uncharacterised protein	NA	NA	NA	NA
SQH24480.1\|626414_627302_-	ABC transporter arginine-binding protein precursor	NA	NA	NA	NA
SQH24481.1\|627575_629405_+	DNA polymerase III subunit tau	A0A1L2BWV7	Bacteriophage	6.1e-46	37.8
SQH24482.1\|629401_631234_+	Lipoteichoic acid synthase 1	NA	NA	NA	NA
SQH24483.1\|631369_631762_-	Inner membrane protein yccF	NA	NA	NA	NA
SQH24484.1\|632030_633443_-	Threonine synthase	NA	NA	NA	NA
SQH24485.1\|633511_633886_-	Uncharacterised protein	NA	NA	NA	NA
SQH24486.1\|634016_635324_+	Replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.9e-73	38.2
SQH24487.1\|635435_637457_-	oligopeptide transporter, OPT family	NA	NA	NA	NA
SQH24488.1\|637776_639273_-	Ribonuclease G	NA	NA	NA	NA
SQH24489.1\|639540_640056_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQH24490.1\|640120_641155_-	Holliday junction ATP-dependent DNA helicase RuvB	B3GAM6	uncultured_virus	6.6e-05	26.0
SQH24491.1\|641212_642445_-	ribonuclease BN/uncharacterised domain fusion protein	NA	NA	NA	NA
SQH24492.1\|642444_643392_-	Cys regulon transcriptional activator	NA	NA	NA	NA
SQH24493.1\|643728_644412_+	Outer membrane protein class 4 precursor	NA	NA	NA	NA
SQH24494.1\|644520_644781_+	Glutaredoxin-3	A0A0H3TP34	Faustovirus	4.8e-05	30.9
SQH24495.1\|644813_645272_+	Protein-export protein secB	NA	NA	NA	NA
SQH24496.1\|645326_646691_+	Exodeoxyribonuclease 7 large subunit	A0A1B3AYB4	Gordonia_phage	1.2e-33	32.3
SQH24497.1\|646793_647099_+	cell division protein FtsN	NA	NA	NA	NA
SQH24498.1\|647162_647846_-	Inner membrane protein yhhQ	A0A2I7SAW6	Vibrio_phage	4.3e-61	58.5
SQH24499.1\|647934_648408_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	2.4e-50	70.1
SQH24500.1\|648640_650233_-	TPR repeat-containing protein NMB0313 precursor	NA	NA	NA	NA
SQH24501.1\|650270_651281_-	Lipoprotein GNA1870 C terminal like	NA	NA	NA	NA
SQH24502.1\|651575_652727_+	GTP-binding protein obg	NA	NA	NA	NA
SQH24503.1\|652806_653616_+	Release factor glutamine methyltransferase	NA	NA	NA	NA
SQH24504.1\|653783_654452_-	Ribose-5-phosphate isomerase A	NA	NA	NA	NA
SQH24505.1\|654498_654981_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
SQH24506.1\|654977_655244_-	Uncharacterised protein	NA	NA	NA	NA
SQH24507.1\|655286_656219_-	Riboflavin biosynthesis protein ribF	NA	NA	NA	NA
SQH24508.1\|656374_657148_+	Glutamine transport system permease protein glnP	NA	NA	NA	NA
SQH24509.1\|657228_658791_+	magnesium/cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	6.2e-31	37.6
SQH24510.1\|658934_659243_+	Integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.1e-11	38.5
SQH24511.1\|659220_659541_+	Uncharacterised protein	NA	NA	NA	NA
SQH24512.1\|659781_660162_-	Uncharacterised protein	NA	NA	NA	NA
SQH24513.1\|660226_660670_-	Mu-like prophage protein gpG	A0A0U5KRJ7	unidentified_phage	1.2e-19	42.5
SQH24514.1\|660671_661574_-\|head	phage head morphogenesis protein, SPP1 gp7 family	Q6QIB9	Burkholderia_phage	7.9e-55	48.7
SQH24515.1\|661920_662355_+\|tail	phage major tail tube protein	NA	NA	NA	NA
SQH24516.1\|662492_662783_+	Uncharacterised protein	Q6QIA8	Burkholderia_phage	2.8e-06	41.6
SQH24517.1\|662951_663140_-	Uncharacterised protein	NA	NA	NA	NA
SQH24518.1\|663189_663411_+	Uncharacterised protein	NA	NA	NA	NA
SQH24519.1\|663633_664311_+\|tail	phage tail tape measure protein, TP901 family, core region	A0A1W6JT50	Escherichia_phage	5.0e-62	56.2
SQH24520.1\|664346_665852_+\|tail	Phage-related minor tail protein	K4ICR4	Acidithiobacillus_phage	3.4e-18	26.1
SQH24521.1\|665851_666751_+	Phage protein U	NA	NA	NA	NA
SQH24522.1\|666747_666966_+	Phage Tail Protein X	A0A067ZJB1	Vibrio_phage	1.6e-06	40.9
SQH24523.1\|666953_668075_+	Phage protein D	Q6QIA2	Burkholderia_phage	7.3e-66	44.6
SQH24524.1\|668058_668649_+\|plate	Phage P2 baseplate assembly protein gpV	NA	NA	NA	NA
SQH24525.1\|668757_669132_+	Gene 25-like lysozyme	NA	NA	NA	NA
SQH24526.1\|669128_669596_+	Uncharacterized homolog of phage Mu protein gp47	A4JWL6	Burkholderia_virus	7.3e-20	42.3
SQH24527.1\|669897_671352_+\|tail	Phage tail fibre repeat	A0A0S4L0Z9	Pseudomonas_phage	1.1e-10	38.5
SQH24528.1\|671364_671574_+	Uncharacterised protein	NA	NA	NA	NA
SQH24529.1\|671620_671875_+	Uncharacterised protein	A0A0R6PC60	Moraxella_phage	3.2e-14	52.1
SQH24530.1\|672018_672456_+	Site-specific DNA methylase	A0A2H4JHL6	uncultured_Caudovirales_phage	8.9e-36	52.7
SQH24531.1\|672937_674827_+	putative methyltransferase	Q1MVP0	Enterobacteria_phage	2.0e-140	45.0
SQH24532.1\|674828_677729_+	type III restriction-modification system StyLTI enzyme res	Q71TG1	Escherichia_phage	3.2e-267	51.3
SQH24533.1\|677922_678354_+	Uncharacterised protein	NA	NA	NA	NA
SQH24534.1\|678444_679263_-	DNA ligase	A0A1X9VNU1	Mimivirus	7.0e-26	31.2
SQH24535.1\|679318_679741_-	OsmC-like protein	NA	NA	NA	NA
SQH24536.1\|679859_681290_+	Dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	4.6e-49	29.3

DBSCAN-SWA_3

861291 : 868800

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH24716.1\|861291_861858_+	Segregation and condensation protein B homolog	A0A1B1IVT7	uncultured_Mediterranean_phage	7.2e-22	35.4
SQH24717.1\|861863_862751_+	Arogenate dehydrogenase	NA	NA	NA	NA
SQH24718.1\|862831_863926_-	Restriction enzyme BgcI subunit beta	A0A2H4J2Z3	uncultured_Caudovirales_phage	1.3e-32	46.1
SQH24719.1\|863943_864660_-	Restriction enzyme BgcI subunit alpha	A0A2H4JBT5	uncultured_Caudovirales_phage	2.4e-91	68.6
SQH24720.1\|864693_865629_-	Restriction enzyme BgcI subunit alpha	A0A2H4JBT5	uncultured_Caudovirales_phage	6.8e-110	65.9
SQH24721.1\|865618_865981_-	Uncharacterised protein	A0A2H4JBT5	uncultured_Caudovirales_phage	4.5e-25	59.8
SQH24722.1\|866208_866499_-	ribosome hibernation promoting factor HPF	NA	NA	NA	NA
SQH24723.1\|866557_867913_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
SQH24724.1\|868074_868800_-	Lipopolysaccharide export system ATP-binding protein LptB	A0A2H4PQG7	Staphylococcus_phage	2.2e-23	27.4

DBSCAN-SWA_4

928365 : 986404

Erwinia_phage(13.64%)

plate,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH24785.1\|928365_928668_+\|protease	ATP-dependent Clp protease adapter protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.0e-14	44.4
SQH24786.1\|928664_930938_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-157	41.2
SQH24787.1\|931064_931970_+	Uncharacterised protein	NA	NA	NA	NA
SQH24788.1\|931979_935636_+	Exodeoxyribonuclease V beta chain	S5M596	Bacillus_phage	9.8e-11	20.9
SQH24789.1\|935783_935978_+	Uncharacterised protein	NA	NA	NA	NA
SQH24790.1\|935987_936536_+	Oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	7.0e-30	40.0
SQH24791.1\|936679_937552_+	YicC-like family, N-terminal region	NA	NA	NA	NA
SQH24792.1\|937991_939068_+	P-protein	NA	NA	NA	NA
SQH24793.1\|939132_939714_-	Predicted methyltransferase (contains TPR repeat)	NA	NA	NA	NA
SQH24794.1\|939710_940043_-	Uncharacterised protein	NA	NA	NA	NA
SQH24795.1\|940039_941170_-	Homoserine O-acetyltransferase	NA	NA	NA	NA
SQH24796.1\|941215_941515_-	RNA-binding protein HI_1333	NA	NA	NA	NA
SQH24797.1\|941696_942851_+	Ribonucleoside-diphosphate reductase 1 subunit beta	W6AT53	Erwinia_phage	1.6e-161	72.7
SQH24798.1\|942999_944382_+	H+/gluconate symporter and related permeases	NA	NA	NA	NA
SQH24799.1\|944384_944603_+	SlyX	NA	NA	NA	NA
SQH24800.1\|944675_945077_+	Inner membrane protein yqaA	NA	NA	NA	NA
SQH24801.1\|945199_946639_+	Glucose-6-phosphate 1-dehydrogenase	M4SP85	Cyanophage	3.3e-71	34.0
SQH24802.1\|947033_947732_+	6-phosphogluconolactonase	NA	NA	NA	NA
SQH24803.1\|947712_948717_+	Glucokinase	NA	NA	NA	NA
SQH24804.1\|948695_948878_-	Uncharacterised protein	NA	NA	NA	NA
SQH24805.1\|948874_949927_-	Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive	A0A0B6VT43	Edwardsiella_phage	1.0e-82	48.5
SQH24806.1\|950293_950656_-	Uncharacterised protein	NA	NA	NA	NA
SQH24807.1\|950785_951613_-	Undecaprenyl-diphosphatase	NA	NA	NA	NA
SQH24808.1\|951674_952379_-	Thiol:disulfide interchange protein DsbA precursor	NA	NA	NA	NA
SQH24809.1\|952417_953278_-	cell division protein FtsN	NA	NA	NA	NA
SQH24810.1\|953342_954137_-	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB	NA	NA	NA	NA
SQH24811.1\|954288_955104_+	Probable thiol:disulfide interchange protein DsbC precursor	NA	NA	NA	NA
SQH24812.1\|955303_955555_+	transcriptional regulator BolA	NA	NA	NA	NA
SQH24813.1\|955636_956545_+	Tyrosine recombinase XerC	G1JX48	Mycobacterium_phage	3.7e-12	27.4
SQH24814.1\|956541_956985_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQH24815.1\|957115_957967_+	Als operon repressor	NA	NA	NA	NA
SQH24816.1\|958022_959696_+	Glucose-6-phosphate isomerase	NA	NA	NA	NA
SQH24817.1\|959780_960311_+	Uncharacterised protein	NA	NA	NA	NA
SQH24818.1\|960382_961381_-	UDP-glucose 4-epimerase	A0A1V0SAI8	Catovirus	1.9e-41	36.4
SQH24819.1\|961462_962332_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-31	35.0
SQH24820.1\|962550_963054_+	Uncharacterised protein	NA	NA	NA	NA
SQH24821.1\|963068_963734_+	phage shock protein A	NA	NA	NA	NA
SQH24822.1\|963802_964288_+	Uncharacterised protein	NA	NA	NA	NA
SQH24823.1\|964445_965117_+	Inner membrane protein yqiJ	NA	NA	NA	NA
SQH24824.1\|965234_966953_+	Inner membrane protein yqiK	NA	NA	NA	NA
SQH24825.1\|967153_968623_+	Pyruvate kinase II	NA	NA	NA	NA
SQH24826.1\|969441_970530_+	Ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA
SQH24827.1\|970577_970775_+	Uncharacterised protein	NA	NA	NA	NA
SQH24828.1\|970827_971325_+	Dihydrofolate reductase	A0A0A8JB64	Ralstonia_phage	1.9e-26	44.3
SQH24829.1\|971324_971756_+	aromatic amino acid exporter	NA	NA	NA	NA
SQH24830.1\|971816_973580_-	DNA primase	A0A1S5RFN0	Helicobacter_phage	1.6e-46	32.2
SQH24831.1\|973692_974865_-	putative enoyl-[acyl-carrier-protein] reductase II	NA	NA	NA	NA
SQH24832.1\|975217_976075_-	Site-specific recombinase XerD	C8CLF4	Xylella_phage	4.1e-45	42.9
SQH24833.1\|976138_976492_+	Protein of uncharacterised function (DUF754)	NA	NA	NA	NA
SQH24834.1\|976472_977003_+	Predicted lysozyme (DUF847)	A0A0M3LSH2	Mannheimia_phage	4.2e-48	56.9
SQH24835.1\|976999_977317_+	Uncharacterised protein	NA	NA	NA	NA
SQH24836.1\|977727_978159_+\|tail	P2 phage tail completion protein R (GpR)	Q9ZXL3	Pseudomonas_virus	1.7e-18	38.3
SQH24837.1\|978162_978897_+	phage virion morphogenesis protein	NA	NA	NA	NA
SQH24838.1\|979087_979372_+	Antitoxin RelB	NA	NA	NA	NA
SQH24839.1\|979368_979638_+	mRNA interferase YafQ	NA	NA	NA	NA
SQH24840.1\|979796_980405_+\|plate	Phage P2 baseplate assembly protein gpV	F1BUP5	Erwinia_phage	7.8e-30	43.6
SQH24841.1\|980401_980737_+	Gene 25-like lysozyme	E5E3R0	Burkholderia_phage	3.9e-15	50.7
SQH24842.1\|980733_981630_+	Uncharacterized homolog of phage Mu protein gp47	A0A077K9X9	Ralstonia_phage	1.9e-45	42.5
SQH24843.1\|981626_982208_+\|tail	Bacteriophage P2-related tail formation protein	NA	NA	NA	NA
SQH24844.1\|982225_983626_+\|tail	Phage tail fibre repeat	A0A0S4L0Z9	Pseudomonas_phage	1.1e-10	38.5
SQH24845.1\|983638_983848_+	Uncharacterised protein	NA	NA	NA	NA
SQH24846.1\|983894_984149_+	Uncharacterised protein	A0A0R6PC60	Moraxella_phage	3.2e-14	52.1
SQH24847.1\|984292_984730_+	Site-specific DNA methylase	A0A2H4JHL6	uncultured_Caudovirales_phage	8.9e-36	52.7
SQH24848.1\|985201_986404_+\|tail	Phage tail sheath protein	F1BUU3	Erwinia_phage	2.7e-95	48.1

DBSCAN-SWA_5

1048865 : 1053915

Paenibacillus_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH24918.1\|1048865_1050056_-	LysM domain/BON superfamily protein	G3MBQ1	Bacillus_virus	6.0e-10	56.2
SQH24919.1\|1050210_1050714_+	Peptide deformylase 1	E3SLL2	Synechococcus_phage	8.7e-19	45.5
SQH24920.1\|1050794_1051724_+\|tRNA	Methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.4e-06	30.8
SQH24921.1\|1051804_1051981_+	Uncharacterised protein	NA	NA	NA	NA
SQH24922.1\|1052273_1052561_+	Transposase and inactivated derivatives	A0A0N9SHJ4	Paenibacillus_phage	6.3e-06	32.9
SQH24923.1\|1052602_1053091_-	Transposase DDE domain	NA	NA	NA	NA
SQH24924.1\|1053108_1053372_-	Transposase and inactivated derivatives	A0A0N9SHJ4	Paenibacillus_phage	5.7e-06	32.9
SQH24925.1\|1053558_1053915_-\|transposase	IS1 transposase	A0A218MNG1	uncultured_virus	6.6e-13	52.3

DBSCAN-SWA_6

1291719 : 1341861

Burkholderia_phage(18.18%)

tail,tRNA,head,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH25147.1\|1291719_1292811_-\|tRNA	tRNA-specific 2-thiouridylase mnmA	NA	NA	NA	NA
SQH25148.1\|1292923_1293754_-	ABC transporter arginine-binding protein 1 precursor	NA	NA	NA	NA
SQH25149.1\|1293791_1294316_-	Protein of uncharacterised function (DUF615)	NA	NA	NA	NA
SQH25150.1\|1294424_1295789_+	peptidase PmbA	NA	NA	NA	NA
SQH25151.1\|1295791_1296139_+	Uncharacterised protein	NA	NA	NA	NA
SQH25152.1\|1296188_1297685_+	Ornithine/acetylornithine aminotransferase	A0A248XCZ8	Klebsiella_phage	2.5e-77	42.5
SQH25153.1\|1297767_1299018_+	Gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	3.5e-93	45.7
SQH25154.1\|1299289_1299778_+	Uncharacterised protein	NA	NA	NA	NA
SQH25155.1\|1299774_1300062_+	CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase	G9IAA2	Pseudomonas_phage	1.1e-13	54.8
SQH25156.1\|1300140_1300920_+	Ferredoxin--NADP reductase	NA	NA	NA	NA
SQH25157.1\|1300958_1302080_-	NnrS protein	NA	NA	NA	NA
SQH25158.1\|1302072_1302765_-	Aliphatic sulfonates import ATP-binding protein SsuB	G3M9Y6	Bacillus_virus	1.6e-18	30.7
SQH25159.1\|1302765_1303563_-	Bicarbonate transport system permease protein CmpB	NA	NA	NA	NA
SQH25160.1\|1303640_1304615_-	ABC-type taurine transport system, periplasmic component	NA	NA	NA	NA
SQH25161.1\|1304651_1306568_-	Outer membrane cobalamin receptor protein	NA	NA	NA	NA
SQH25162.1\|1306825_1307077_-	Superfamily II helicase and inactivated derivatives	NA	NA	NA	NA
SQH25163.1\|1307055_1307310_-	Superfamily II helicase and inactivated derivatives	NA	NA	NA	NA
SQH25164.1\|1308004_1310461_+	Ribonuclease R	Q0GXV6	Lactococcus_phage	5.3e-69	35.4
SQH25165.1\|1310498_1311263_-	Sec-independent protein translocase protein TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.7e-27	33.5
SQH25166.1\|1311259_1311766_-	Sec-independent protein translocase protein TatB	NA	NA	NA	NA
SQH25167.1\|1311767_1311971_-	Sec-independent protein translocase protein TatA	NA	NA	NA	NA
SQH25168.1\|1312022_1312343_-	HIT-like protein hinT	NA	NA	NA	NA
SQH25169.1\|1312424_1312745_-	Phosphoribosyl-ATP pyrophosphatase	NA	NA	NA	NA
SQH25170.1\|1312905_1313169_-	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
SQH25171.1\|1313178_1313709_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQH25172.1\|1313719_1314475_-	Sulfite exporter TauE/SafE	NA	NA	NA	NA
SQH25173.1\|1314557_1315742_-	Twitching mobility protein	NA	NA	NA	NA
SQH25174.1\|1315923_1316406_+	Leucine-responsive regulatory protein	NA	NA	NA	NA
SQH25175.1\|1316511_1317852_+	Predicted GTPase	A0A0R6PKQ1	Moraxella_phage	2.0e-86	45.5
SQH25176.1\|1318014_1318860_+	Histidinol phosphatase and related hydrolases of the PHP family	NA	NA	NA	NA
SQH25177.1\|1318982_1320434_+	Citrate transporter	NA	NA	NA	NA
SQH25178.1\|1320671_1320845_+	Uncharacterised protein	NA	NA	NA	NA
SQH25179.1\|1320957_1321548_+	Sigma-24	NA	NA	NA	NA
SQH25180.1\|1321544_1321715_+	Uncharacterised protein	NA	NA	NA	NA
SQH25181.1\|1321894_1323808_+\|tRNA	Threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	6.5e-123	36.6
SQH25182.1\|1324544_1324892_-	Transposase and inactivated derivatives	NA	NA	NA	NA
SQH25183.1\|1325086_1325443_+\|transposase	IS1 transposase	A0A218MNG1	uncultured_virus	6.6e-13	52.3
SQH25184.1\|1325848_1327462_+	Phosphoethanolamine transferase CptA	NA	NA	NA	NA
SQH25185.1\|1327541_1328123_-	Arabinose 5-phosphate isomerase KdsD	A0A0A0Q3B9	Pectobacterium_bacteriophage	7.5e-06	60.9
SQH25186.1\|1328757_1329216_-	Modification methylase DpnIIA	Q5ZQW7	Pseudomonas_phage	1.1e-39	73.8
SQH25187.1\|1329268_1329385_-	Mu-like prophage protein Com	NA	NA	NA	NA
SQH25188.1\|1329561_1330020_-	Uncharacterised protein	A0A0R6PGL8	Moraxella_phage	1.2e-30	49.7
SQH25189.1\|1330047_1330722_-	Uncharacterised protein	A0A0R6PGZ9	Moraxella_phage	5.0e-38	63.2
SQH25190.1\|1330734_1332189_-\|tail	Phage tail fibre repeat	A0A0S4L0Z9	Pseudomonas_phage	1.1e-10	38.5
SQH25191.1\|1332490_1332958_-	Uncharacterized homolog of phage Mu protein gp47	A4JWL6	Burkholderia_virus	7.3e-20	42.3
SQH25192.1\|1332954_1333329_-	Gene 25-like lysozyme	NA	NA	NA	NA
SQH25193.1\|1333470_1334049_-\|plate	Phage P2 baseplate assembly protein gpV	NA	NA	NA	NA
SQH25194.1\|1334035_1335139_-	Phage protein D	Q6QIA2	Burkholderia_phage	4.3e-63	42.4
SQH25195.1\|1335126_1335345_-	Phage Tail Protein X	Q6QIA3	Burkholderia_phage	7.8e-09	38.8
SQH25196.1\|1335345_1336233_-	Phage protein U	NA	NA	NA	NA
SQH25197.1\|1336232_1337741_-\|tail	Phage-related minor tail protein	K4ICR4	Acidithiobacillus_phage	5.8e-18	26.3
SQH25198.1\|1337776_1338454_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A1W6JT50	Escherichia_phage	5.0e-62	56.2
SQH25199.1\|1338676_1338898_-	Uncharacterised protein	NA	NA	NA	NA
SQH25200.1\|1338947_1339136_+	Uncharacterised protein	NA	NA	NA	NA
SQH25201.1\|1339304_1339595_-	Uncharacterised protein	Q6QIA8	Burkholderia_phage	2.8e-06	41.6
SQH25202.1\|1339732_1340167_-\|tail	phage major tail tube protein	NA	NA	NA	NA
SQH25203.1\|1340513_1341416_+\|head	phage head morphogenesis protein, SPP1 gp7 family	Q6QIB9	Burkholderia_phage	7.9e-55	48.7
SQH25204.1\|1341417_1341861_+	Mu-like prophage protein gpG	A0A0U5KRJ7	unidentified_phage	1.2e-19	42.5

DBSCAN-SWA_7

1740884 : 1773378

Burkholderia_virus(27.27%)

plate,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH25605.1\|1740884_1741322_-	Site-specific DNA methylase	A0A2H4JHL6	uncultured_Caudovirales_phage	8.9e-36	52.7
SQH25606.1\|1741465_1741720_-	Uncharacterised protein	A0A0R6PC60	Moraxella_phage	3.2e-14	52.1
SQH25607.1\|1741766_1741976_-	Uncharacterised protein	NA	NA	NA	NA
SQH25608.1\|1741988_1743443_-\|tail	Phage tail fibre repeat	A0A0S4L0Z9	Pseudomonas_phage	1.1e-10	38.5
SQH25609.1\|1743443_1744022_-\|tail	Bacteriophage P2-related tail formation protein	Q6QI98	Burkholderia_phage	1.7e-47	52.3
SQH25610.1\|1744014_1745154_-	Uncharacterized homolog of phage Mu protein gp47	A4JWL6	Burkholderia_virus	8.2e-57	38.5
SQH25611.1\|1745150_1745525_-	Gene 25-like lysozyme	NA	NA	NA	NA
SQH25612.1\|1745666_1746257_-\|plate	Phage P2 baseplate assembly protein gpV	NA	NA	NA	NA
SQH25613.1\|1746240_1747362_-	Phage protein D	Q6QIA2	Burkholderia_phage	7.3e-66	44.6
SQH25614.1\|1747349_1747568_-	Phage Tail Protein X	A0A067ZJB1	Vibrio_phage	1.6e-06	40.9
SQH25615.1\|1747564_1748464_-	Phage protein U	NA	NA	NA	NA
SQH25616.1\|1748463_1749969_-\|tail	Phage-related minor tail protein	K4ICR4	Acidithiobacillus_phage	3.4e-18	26.1
SQH25617.1\|1750004_1750682_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A1W6JT50	Escherichia_phage	5.0e-62	56.2
SQH25618.1\|1750904_1751126_-	Uncharacterised protein	NA	NA	NA	NA
SQH25619.1\|1751175_1751364_+	Uncharacterised protein	NA	NA	NA	NA
SQH25620.1\|1751532_1751814_-	Uncharacterised protein	Q6QIA8	Burkholderia_phage	8.9e-05	37.8
SQH25621.1\|1751947_1752463_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	3.1e-40	47.9
SQH25622.1\|1752478_1753870_-\|tail	Phage tail sheath protein	A4JWK5	Burkholderia_virus	3.3e-100	44.8
SQH25623.1\|1753879_1754380_-	Gp37 protein	Q6QIB2	Burkholderia_phage	1.3e-22	34.5
SQH25624.1\|1754380_1754806_-	Mu-like prophage protein gp36	A0A0M3LP98	Mannheimia_phage	3.6e-10	31.9
SQH25625.1\|1754809_1755064_-	Uncharacterised protein	NA	NA	NA	NA
SQH25626.1\|1755067_1755400_-	Uncharacterised protein	NA	NA	NA	NA
SQH25627.1\|1755448_1756381_-	Uncharacterised protein	A4JWK0	Burkholderia_virus	6.3e-55	42.6
SQH25628.1\|1756396_1757488_-	Uncharacterised protein	Q6QIB7	Burkholderia_phage	2.5e-55	36.9
SQH25629.1\|1757723_1758074_-	Uncharacterized conserved protein	Q6QIE8	Burkholderia_phage	1.3e-16	42.1
SQH25630.1\|1758195_1759095_-	Recombination-associated protein rdgC	L7TP07	Pseudomonas_virus	5.7e-37	32.8
SQH25631.1\|1759208_1759817_-	Protein of uncharacterised function (DUF3164)	A0A0M3LQ92	Mannheimia_phage	9.4e-44	45.8
SQH25632.1\|1759921_1760341_-	Uncharacterised protein	NA	NA	NA	NA
SQH25633.1\|1760337_1760835_-	Uncharacterised protein	A0A2H4JFV8	uncultured_Caudovirales_phage	1.3e-27	42.2
SQH25634.1\|1760831_1760999_-	Uncharacterised protein	NA	NA	NA	NA
SQH25635.1\|1761056_1761209_-	Uncharacterised protein	NA	NA	NA	NA
SQH25636.1\|1761210_1762599_-	putative secretion ATPase, PEP-CTERM locus subfamily	A4JWN1	Burkholderia_virus	1.5e-76	61.3
SQH25637.1\|1762657_1763017_-	Uncharacterised protein	Q6QIE0	Burkholderia_phage	2.3e-13	47.8
SQH25638.1\|1763023_1763896_-	Protein of uncharacterised function (DUF3102)	A4JWN3	Burkholderia_virus	3.3e-42	39.7
SQH25639.1\|1763932_1764223_-	Uncharacterized protein conserved in archaea	NA	NA	NA	NA
SQH25640.1\|1764261_1764411_-	phage-associated protein, BcepMu gp16 family	A0A0S4L0D0	Pseudomonas_phage	2.0e-08	61.9
SQH25641.1\|1764524_1764908_+	Helix-turn-helix domain	NA	NA	NA	NA
SQH25642.1\|1764968_1766114_+	Uncharacterised protein	NA	NA	NA	NA
SQH25643.1\|1766203_1766716_+	Uncharacterised protein	A0A1L2C8R8	Pseudomonas_phage	4.1e-56	60.2
SQH25644.1\|1766729_1766903_+	Uncharacterised protein	NA	NA	NA	NA
SQH25645.1\|1766905_1767067_+	Uncharacterised protein	NA	NA	NA	NA
SQH25646.1\|1767069_1767330_+	Uncharacterised protein	NA	NA	NA	NA
SQH25647.1\|1767651_1767858_+	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	V5USD3	Shigella_phage	1.0e-10	55.7
SQH25648.1\|1767850_1768174_+	Uncharacterised protein	Q6QIC4	Burkholderia_phage	1.2e-10	40.2
SQH25649.1\|1768170_1768476_+	Uncharacterised protein	A0A2H4JGU5	uncultured_Caudovirales_phage	4.0e-27	60.4
SQH25650.1\|1768477_1769023_+	Protein of uncharacterised function (DUF3486)	A4JWJ3	Burkholderia_virus	2.9e-36	47.5
SQH25651.1\|1769019_1770525_+	Mu-like prophage FluMu protein gp28	A4JWJ4	Burkholderia_virus	1.5e-199	66.9
SQH25652.1\|1770555_1772052_+	Mu-like prophage protein gp29	A4JWJ5	Burkholderia_virus	9.3e-109	44.8
SQH25653.1\|1772041_1772950_+\|head	phage head morphogenesis protein, SPP1 gp7 family	A0A0M4UTA3	Ralstonia_phage	2.6e-61	46.9
SQH25654.1\|1772946_1773378_+	Mu-like prophage protein gpG	A0A0U5KRJ7	unidentified_phage	3.7e-18	39.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage