CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483431	Campylobacter fetus subsp. fetus strain NCTC10842 genome assembly, chromosome: 1	2 crisprs	PD-DExK,cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2,DEDDh,csx23,cas10,csm3gr7,csx10gr5,csx19	0	17	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483431_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483431_1

648949-649501

TypeI-B

Consensus_repeat	Method
GTTTGCTAATGACAATGTTTGTGTTGAAAC	PILER-CR
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRT

8 spacers

cas6,cas8b1,cas7b,cas5

The CRISPR arrays of LS483431_1

>merge|LS483431|1|648949-649501|PILER-CR,CRISPRCasFinder,CRT
GTTTGCTAATGACAATGTTTGTGTTGAAACTTTGTTTTAGATATTACAGTTATAGGGCTATTTATGTTTGCTAATGACAATGTTTGTGTTGAAACAGAATTATATTTTATTACACAAGATTTAAGCCTTGTGTTTGCTAATGACAATGTTTGTGTTGAAACACAACAGCACTTGGCTCTTGCCAAAACGATATACTGTTTGCTAATGACAATGTTTGTGTTGAAACTCTCTTGCGTACCCTGCAAAGAACATAGCGTCTCCGTTTGCTAATGACAATGTTTGTGTTGAAACTACTAAATTTAAAGGTAGAAAACTTACTAATTATGGTTTGCTAATGACAATGTTTGTGTTGAAACCGAATGAAGTAGCAAATAAAATATCAAAAGACTTGCGTTTGCTAATGACAATGTTTGTGTTGAAACCCCAGTACAAAGCATTCTCTTAAATCAAAATCTTTGTTTGCTAATGAAAATGTTTGTGTTGAAACCCATCTAACTACTGCAGGCGGAACATTTCCCGATGGGTTTGCTAATGACAATGTTTGTGTTGAAAC

>LS483431|1|1|648949-649501|PILER-CR
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAATTATATTTTATTACACAAGATTTAAGCCTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACAACAGCACTTGGCTCTTGCCAAAACGATATACT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTCTTGCGTACCCTGCAAAGAACATAGCGTCTCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TACTAAATTTAAAGGTAGAAAACTTACTAATTATG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGAATGAAGTAGCAAATAAAATATCAAAAGACTTGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCCAGTACAAAGCATTCTCTTAAATCAAAATCTTT
GTTTGCTAATGAAAATGTTTGTGTTGAAAC	CCATCTAACTACTGCAGGCGGAACATTTCCCGATGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC

>LS483431|1|1|648949-649501|CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAATTATATTTTATTACACAAGATTTAAGCCTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACAACAGCACTTGGCTCTTGCCAAAACGATATACT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTCTTGCGTACCCTGCAAAGAACATAGCGTCTCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TACTAAATTTAAAGGTAGAAAACTTACTAATTATG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGAATGAAGTAGCAAATAAAATATCAAAAGACTTGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCCAGTACAAAGCATTCTCTTAAATCAAAATCTTT
GTTTGCTAATGAAAATGTTTGTGTTGAAAC	CCATCTAACTACTGCAGGCGGAACATTTCCCGATGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC

>LS483431|1|1|648949-649501|CRT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAATTATATTTTATTACACAAGATTTAAGCCTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACAACAGCACTTGGCTCTTGCCAAAACGATATACT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTCTTGCGTACCCTGCAAAGAACATAGCGTCTCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TACTAAATTTAAAGGTAGAAAACTTACTAATTATG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGAATGAAGTAGCAAATAAAATATCAAAAGACTTGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCCAGTACAAAGCATTCTCTTAAATCAAAATCTTT
GTTTGCTAATGAAAATGTTTGTGTTGAAAC	CCATCTAACTACTGCAGGCGGAACATTTCCCGATGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483431.1\|SQH29965.1\|639865_641089_-\|gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|143398
LS483431.1\|SQH29982.1\|652952_653669_+\|CRISPR-associated-protein-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
LS483431.1\|SQH29969.1\|644738_645110_+\|Flagellin-N-methylase	unknown	unknown	gnl\|CDD\|223799
LS483431.1\|SQH29966.1\|641167_642121_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|379355
LS483431.1\|SQH29976.1\|650254_650554_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483431.1\|SQH29968.1\|644049_644745_+\|methyltransferase-small	unknown	unknown	gnl\|CDD\|226608
LS483431.1\|SQH29971.1\|646377_647154_+\|indole-3-glycerol-phosphate-synthase	unknown	unknown	gnl\|CDD\|234710
LS483431.1\|SQH29978.1\|651218_651848_+\|phage-anti-repressor-protein	unknown	unknown	gnl\|CDD\|378235
LS483431.1\|SQH29967.1\|642130_644053_+\|putative-vesicular-transport-factor-Uso1p	unknown	unknown	gnl\|CDD\|274008
LS483431.1\|SQH29983.1\|653658_655362_+\|Uncharacterised-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
LS483431.1\|SQH29979.1\|651844_652015_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483431.1\|SQH29973.1\|647656_648394_+\|UPF0246-protein-YaaA	unknown	unknown	gnl\|CDD\|377151
LS483431.1\|SQH29980.1\|652096_652342_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483431.1\|SQH29985.1\|656286_657048_+\|CRISPR-associated-protein-Cas5,-hmari-subtype	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
LS483431.1\|SQH29970.1\|645085_646381_+\|TPR-repeat-containing-protein	unknown	unknown	gnl\|CDD\|274350
LS483431.1\|SQH29981.1\|652492_652666_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483431.1\|SQH29984.1\|655345_656290_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
LS483431.1\|SQH29977.1\|650574_650808_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483431.1\|SQH29972.1\|647153_647660_+\|Hit-family-protein	unknown	unknown	gnl\|CDD\|238606
LS483431.1\|SQH29964.1\|638360_639704_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|366662

Protein	Function_ID	Function_description	E-value
LS483431.1\|SQH29965.1\|639865_641089_-\|gamma-glutamyl-phosphate-reductase	gnl\|CDD\|143398	cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).	0
LS483431.1\|SQH29982.1\|652952_653669_+\|CRISPR-associated-protein-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.62733e-14
LS483431.1\|SQH29969.1\|644738_645110_+\|Flagellin-N-methylase	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	1.65843e-13
LS483431.1\|SQH29966.1\|641167_642121_+\|oxidoreductase	gnl\|CDD\|379355	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase.	1.83609e-57
LS483431.1\|SQH29968.1\|644049_644745_+\|methyltransferase-small	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	6.23796e-54
LS483431.1\|SQH29971.1\|646377_647154_+\|indole-3-glycerol-phosphate-synthase	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	2.53678e-122
LS483431.1\|SQH29978.1\|651218_651848_+\|phage-anti-repressor-protein	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	8.21087e-29
LS483431.1\|SQH29967.1\|642130_644053_+\|putative-vesicular-transport-factor-Uso1p	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	3.59487e-08
LS483431.1\|SQH29973.1\|647656_648394_+\|UPF0246-protein-YaaA	gnl\|CDD\|377151	pfam03883, H2O2_YaaD, Peroxide stress protein YaaA. YaaA is a key element of the stress response to H2O2. It acts by reducing the level of intracellular iron levels after peroxide stress, thereby attenuating the Fenton reaction and the DNA damage that this would cause. The molecular mechanism of action is not known.	3.02596e-45
LS483431.1\|SQH29985.1\|656286_657048_+\|CRISPR-associated-protein-Cas5,-hmari-subtype	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.45768e-34
LS483431.1\|SQH29970.1\|645085_646381_+\|TPR-repeat-containing-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.63633e-07
LS483431.1\|SQH29984.1\|655345_656290_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.57058e-37
LS483431.1\|SQH29972.1\|647153_647660_+\|Hit-family-protein	gnl\|CDD\|238606	cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.	3.53244e-47
LS483431.1\|SQH29964.1\|638360_639704_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0

>LS483431.1|SQH29973.1|647656_648394_+|UPF0246-protein-YaaA
MKILFSPSESKMSGGSRDASVNFSWVFPNLNDKRLEILEMYNSFLKKANKNELQALFGLKKDNELEYYSSDLFSRPLMKAILRYNGVAYEHLNYRNLDERSRKMIDENTIIFSNLYGVILAKDMIFDYKLKQGESIGGFRTEVFYKKYFSGVLDDFLDSDILDLRAGFYEKFYSLTKPYTTIKFLKNGKVVSHFAKAYRGIVLRCIALNQISSLDEFYNMQIPNLKINKIIKNRLKTEIVVDIIG
>LS483431.1|SQH29972.1|647153_647660_+|Hit-family-protein
MEHEFSPWRAEYFKTRKDDGVTDHSCVFCDIAENIQNDEENFVLFRAKNCFAVMNRYPYTLGEFMIIPYIHTDNIENLDKNIWSEMSDLVQLGVGVLKESLNANGVNIGMNLGSAAGAGIAEHIHYHLVPRWSRDTNFITTIAYTRVHGVPFLDQYHTLKKAFQKVFK
>LS483431.1|SQH29971.1|646377_647154_+|indole-3-glycerol-phosphate-synthase
MILDEIISKTKINLENIKENLPLCRLENALTNSYIPRDVKQVLKQKNSINIIAEIKKASPSKGVIKEDFDPLKIAFEYEKAGVSAFSILTEPFYFQGSLEYMALVRRYTNTPILRKDFIVDIYQIVEARLYGADFILLIAKALDKFYLKTLFEYAKSLNLEVLMEIHDETDLEKALFVDADIIGINHRNLQTFDMDMELCIKLIPLIPSGKIIVAESGLYNNSELINLKKQGADAFLIGEHFMRQESIYNAVKDMKGE
>LS483431.1|SQH29970.1|645085_646381_+|TPR-repeat-containing-protein
MYWCRAALIFTLFLAGCADKQSVGAKKNETFFKYSDINTTIDLEAMKGFYLLGDAKSKDALEVFYMLYKTTKKPIFLKEALKIAFVIKDDRLDELITDAREILNADYDVIRIEIGYYILKSQIKDAKDLALNLIQKESNNSINHSILATIYLFNDEPIRALKEFKKAYEIEGSEENLLKLVDMLDNKLDRTNEAIRYLNNWIGENGCSKPVCFTLLNIYSAKGELDLMIEVYIKLYEAYEESDFLNRALEILLYKKDVISAKELLEKYSFNEPILMEIYAELKEFQKAYNVAQDLYNRSQNPEYMARMAIYKYEQSSKNISKFELDMVVKLFEGSVYALNSPIYFNYYGYLLIDYEIDLKKGLDIAKKAYILDPNSPYIIDSIAWGYFKLGECKEAKMWMDKIQSDTKFMKEDEAKAHKTAIDKCFNKGTK
>LS483431.1|SQH29969.1|644738_645110_+|Flagellin-N-methylase
MLKEFGFDYCFDSSKCEVCGAKCCTGDSGYIWISEAEMESLSSHLKLSLPEFKKLFTYRVGVRFSLKEKEYNGAYACLFFDENNKNCSVYEFRPKQCRTFPFWDYFKKHFNELEKECIGVERL
>LS483431.1|SQH29968.1|644049_644745_+|methyltransferase-small
MKLFQLKEGYRYNSDTLFLYDFISKNQIFGNVLDVGCGCGILGLLLKRDFINLNLSSIDIQEINSTITQLNADVNNLVAAVICDDFSKFKSEIKFDFIVSNPPFYNSQITKSENEHISISRYSSSLDPLSFFKSVNANLKPQGVLYFCYDARRVGEILPILSSLKLKLTKLRFVHSRISESSKLALFEAKKSSKSICEIYPPLIIFDENEFSGEVKEIFKKSDTKSEIYEC
>LS483431.1|SQH29967.1|642130_644053_+|putative-vesicular-transport-factor-Uso1p
MKFRKFAQILFLVGTIFFILGCETKDEKALNQDKLKFSDLSMAEQDRYISKDELDKLGSYLTLLNNRNIDINSDEIPSGSVDELRDKIAELIQKNRLLFADNEELAKKNLEIITKLREQNSLRESENKLISAKYLDSMNEVEKQHYKNINDLTKKINEVQKENIQSIKSYEQKIIGLENKIDELEKELSKKDINFNEKVSSATKDQLEKNKELSQKNSYLLEQTQVLKKQVDTLSKELDSKLADKKTQIDTLNQTILTKDNKINDLLASHTNEIIELQNKHSKALYDIKNELDRQKNDYFGELNLKNIELAKLNNDFKEYKLKKDEELKNAENMVLTNYKKIETQRLNAIKSDYERIIFEQNRTIAAFEGKMINLELKFKKELEAKDANYVNTLENLKQKALFLKNDEDRLRAEFDKNITSLKSQITLKNIQISELDSKIKELENEKNDIKKIQNYEILNNMITKLNAQNEELKNYAKKALDEAKKMVLEAENKAKEQNDKLKNYYEELIKNIKNQDNQPVLSDINVDSKRFLSEISCLSLDKSAKLDKDCENKLNDMIKKYGKSRIYEIKAVISDFKFLGDDKVGELKNVNLLNLKSTKDMLNAASKAINSKIKDPMLAYSKDVLLEQSGYGFVIKVYE
>LS483431.1|SQH29966.1|641167_642121_+|oxidoreductase
MENIYDVVVIGGGPFGIATVVEAKYNGFKNVLLLEKGDNHSQTIRKFYKDGKRVDKVYKGLDSQTHGNVEFFDGTKESTLNYFDNLLDNGKIDAVFNIEVESVKKDGDIFNIVTSKNTYKSKNVMIGIGRMGKPNKPEYKIPPSLTQIVNFNLNSCNCGENILVIGGGNSAAEYAIELSKCNTVTLCYRKEKFTRLNEINEAQVFEYFNDKKLNLKLGIDVIGLDNENGKVKVNFSNNSSEIYDRIIYAIGGSTPVDFLQKCGIELNKDGEPIVDEHLQTNTPRLFVGGDIASKNGGSIVVALNDAHTVIDYIIKSK
>LS483431.1|SQH29965.1|639865_641089_-|gamma-glutamyl-phosphate-reductase
MEKLLNNLKNSSKSLSILTQTQRENLIINIANEIMSAKDEILSANKIDLDLAQDLSSALKDRLKLTSKSIENLCNSIKNIANLKDVIGVIKDGWQTKSGLKIEKITIPLGNIATIYESRPNVTAEVAALCIKSANGCALKGGKEAKNTNLAIIKAIHKALQKCGLDKNCVVYLDIDRNEVKKLINMDKYLDLIVPRGGENLVKFVSQNATIPVLKHDKGLCHIYVDEFADLDKALSICVNAKCSRPGVCNAAETILVHEEVANEFIPNLKKSLDEFNVIIFGCKKTAKIIDCELANEQNYSTEYLDFKLNLKIVKNLEESLEHISEFSSGHSEAVISESYSICERFLSLVDSACVYANASTRFSDGGEFGFGAEIGISTNKLHARGPVGLNELTTYKYIIRANGQII
>LS483431.1|SQH29964.1|638360_639704_+|3-deoxy-7-phosphoheptulonate-synthase
MSKWNRDSWRDYNILQQPHYPDKNELKNAEDKLKSLPPLVFAGEVRNLKDELKNVTLGKSFLLQGGDCAESFSNFSANGIRDMFKIMLQMAIVLTFAGGCPVVKVGRVAGQFAKPRSSDFEDIDGVKLPSYRGDIINGFDFTEEARIPDPKRMIDAYYQSASTLNLLRAFSRGGLANLNEVHRWNLGFIKKAELDNKFEKLADELTGALKFMEACGVTTQNTPTLSETKLYTSHEALLLPYEEALTRVDSLTNEWYDCSAHMLWIGERTRGINDAHVHFLSGIKNPIGCKIGPDGKPGDIISLAGKLNPDNEPGRLNIIIRMGADKIEDRLPAILNDVKKEGLNILWSIDPMHGNTIKASSGFKTREFNNVMREVKSFFEIHRACGTIAGGVHLEMTGQDVTECVGGAFNVTEDSLGNRYETQCDPRLNADQALELAFLIADLVKKR
>LS483431.1|SQH29976.1|650254_650554_+|Uncharacterised-protein
MENRKFVIEFYGIEWFIDIPSHIDDGDSGLKIIQPITRIRDKRIVRIFDIFTPSKENIDEAKEYKEFYEICDFEVLSNGYKFIGTFIDALEYIKDNFDK
>LS483431.1|SQH29977.1|650574_650808_+|Uncharacterised-protein
MENLVKDTAKKLNLTYRELGELVGYSESALKAASSSGNISEQLTKSLELLLKNHELQLQNNEFNELKATIKKFINSL
>LS483431.1|SQH29978.1|651218_651848_+|phage-anti-repressor-protein
MSSVVLINNQEVSFEVVGDQTYTTSRDVAQVFEKEHKNIIAQIEALPNDEFRQLNFQPSSQPRLNGLFVKDTKFYNLTRDGFCLLVMGFTGEKAYRWKVEFINAFNKMEAMIKSGGIANEKFTEVITALSEKSTEADEFKAKYYETLERENELLRVVLEDSKSKIGTKLSPNERANIIKLYKSGLSQAEICRQTSRSDTAVRNAIRGAL
>LS483431.1|SQH29979.1|651844_652015_+|Uncharacterised-protein
MKSISIYDVDNIDHARAFLIMINTILMGWHKGADEIDIEYLKSACGDLWLLSYEHI
>LS483431.1|SQH29980.1|652096_652342_-|Uncharacterised-protein
MAWTRSGHPVSGALVGGGGRTGSRTAKAFAKQINHPGTKAQPYLEDGLNNYISSSGLARAKEALAKDVRNKVLNDIKKALK
>LS483431.1|SQH29981.1|652492_652666_-|Uncharacterised-protein
MEDIKKFLWIIFLITLAIFVMANIEEMYIQLISFIVLFPFYIWLDYKLNPHKYKKDS
>LS483431.1|SQH29982.1|652952_653669_+|CRISPR-associated-protein-Cas6
MKIYQLKVFLKLNQNVDFVNSPEFLSSNLHKSMLGDEALRSIHMQRYLKPYSIGFLYGMKGKKDGFTSGEDMYFYVRSIDESFISKLRICLENSKNLGFNVYASKLEVLDSKRIDCLYTMSPATVVLKEGDKTIPWRRENSDIAALKDALILNLKNKYEYFLDKKIEITDDIIELIEIKTNRAFAFKYKNGKIYAYRYQIHFSGNKTAQEFANIAMILGVGVKNTLGFGFCMRSKNVV
>LS483431.1|SQH29983.1|653658_655362_+|Uncharacterised-protein
MLFELLDEFKKRLEKNKDIVTQNHVLKDGVYARISGEKCEIFYVKTTIEKIDGKPHRKTNLYKQNGDIASYDDRDWFEQADYLSSLWDMDKAILPNKKFHSINFLSLFFKLEKPEHVRENLEKYLNVFIDYGKFKTSKDKEKNKEILSFHSDYIKDENRQSLIANSVVLCQKYFNDIIHFAGQNNFKKCYIKFFINEDLKLYEKESRIYIDLKIFNKNEYNIKYNNEILGLSNFNMGMNNNKPFLRHKTRPHEIPHAISQKDALSIKMLFDWLGSQNKNDICDFDSIFMYKSNKDSKALIKDFEYVPVSKSKFKFDTFRIKNFMDIENGEREILSFDDFKQVIDEQLYQKRLFSNLYKDKIKVSKLLSEDMQNILYQTRHSMIEYFEKFNSNEFYYVIQKYSNDFIKVAMQDGEFGRLNAKKSINLLLSIKETKGEKVDIDEIKNRVISALTDDNITKLNGNEYYFLVGNLAMRLVNKSKGWKKTFALTESYTKARNTKKLKMILFSDFDRYKYDIFIGDEILRKAFLLAQNCEDLVMSNSDQQMVLIGIVAKSIIKKSGEKDEVNE
>LS483431.1|SQH29984.1|655345_656290_+|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair
MKLTSRVYGIIGIKSTMANWNADFTGRPKSTGNGDIFASDKALKYPMKKMWESYGKNILFVKSLKQVKDKDGKSKLVPNTLGERYSLLFGDIKEVKSTKEVLANLFNCIDVKNFGATFPENGYNLSITGAVQIGQGFNKFEDINIEVQNILSPFADSRANEKNKDGEDASQSTLGTKIVTDEAHYFYGFCINPLAYNDYKEILGDDFGYDEDDYAEFKKAARFCATYFNSNSKFGCENEFAMFIETDSDAYLPDLSAYMDFISQGKDRIVNLEKIEKMLESSDVKKVEIYYNPLSLDVETKFDKFDIYSGNKIQ
>LS483431.1|SQH29985.1|656286_657048_+|CRISPR-associated-protein-Cas5,-hmari-subtype
MRAVSFKLSGKFAHFKKPDVNEYAYFTYNNIPKPTLLGLLGAIIGLKGYAQKTYKDKKDKKSLFNNENSSNEPEFYERLKHLKICIIPLVKYGRFSKKIQIFNNGVGYASGEDGGNLIVREQWLENPSWQILIEDDGSAEFETVSRYLFDKKAKFIPYLGKNDHFADISEVEKIDLAESKKDRISIKSLFLDDLAEQVDDPDDEISYLFNEFYPISFNELMFYELKKVAFTNQICRAIDGKWYEFKDGTICFF

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Crispr_ID: LS483431_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483431_2

661549-665126

TypeI-B

Consensus_repeat	Method
GTTTGCTAATGACAATGTTTGTGTTGAAAC	PILER-CR
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAACT	CRT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRISPRCasFinder

54 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of LS483431_2

>merge|LS483431|2|661549-665126|PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder,CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAACTTTGTTTTAGATATTACAGTTATAGGGCTATTTATGTTTGCTAATGACAATGTTTGTGTTGAAACTCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCCGTTTGCTAATGACAATGTTTGTGTTGAAACACCATATCATCTATGCTGATACTTTTGCCATTTATCGTTTGCTAATGACAATGTTTGTGTTGAAACGAAGCTAAATGACCATTAACAATAAACATATAAAGTTTGCTAATGACAATGTTTGTGTTGAAACAATTCTCCTGTGCAGTCCAATACACTTCCTTTATCTGTTTGCTAATGACAATGTTTGTGTTGAAACCACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCCGTTTGCTAATGACAATGTTTGTGTTGAAACAATGATACGTCTTTAGCACTTAGCAAATTCGGTGCTGTTTGCTAATGACAATGTTTGTGTTGAAACAATTGCAAATTTAATCCAAGGTAGTCTAATCTCTAGTTTGCTAATGACAATGTTTGTGTTGAAACTTTTAGCCCCTTACGTAGTCTACTACCTTACCGGGTTTGCTAATGACAATGTTTGTGTTGAAACGAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTAGTTTGCTAATGACAATGTTTGTGTTGAAACTAGCCTTAGACTGGGCTATTAAATCTGGTAAATACGGTTTGCTAATGACAATGTTTGTGTTGAAACTTACACTCTTTAAAAATACTGCTATTATCTATTATCGTTTGCTAATGACAATGTTTGTGTTGAAACATTAAGATTCTAACCTTTTTTAGATATAAGAAGTATGTTTGCTAATGACAATGTTTGTGTTGAAACCAAAATAAAAAAGAAGGAAAAGCTAAATTTAAAAGGTTTGCTAATGACAATGTTTGTGTTGAAACTCTGGTATTAGCACGTAACCATCTTTTTGTACGTCGTTTGCTAATGACAATGTTTGTGTTGAAACTATCTTGCAGCTAGCAATATTCTTATTATATTTATCGTTTGCTAATGACAATGTTTGTGTTGAAACAGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCTGTTTGCTAATGACAATGTTTGTGTTGAAACTTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGTGTTTGCTAATGACAATGTTTGTGTTGAAACCGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTAGTTTGCTAATGACAATGTTTGTGTTGAAACTTTGTTTTAGATATTACAGTTATAGGGCTATTTATTGTTTGCTAATGACAATGTTTGTGTTGAAACTTTGTTTTAGATATTACAGTTATAGGGCTATTTATTGTTTGCTAATGACAATGTTTGTGTTGAAACCAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTTGTTTGCTAATGACAATGTTTGTGTTGAAACTCTTTAACCTTTTACAAAGCTCACAACAACTTTTTGTTTGCTAATGACAATGTTTGTGTTGAAACAGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTAGTTTGCTAATGACAATGTTTGTGTTGAAACATAGGATACTTCCAGCCATACAAAGAACTATAAACGGTTTGCTAATGACAATGTTTGTGTTGAAACTTTATCATAACGCCACTCATTTGCCACCGCCAAACGTTTGCTAATGACAATGTTTGTGTTGAAACATGTGTTTTTTTATGTTTTTTGGGGTTTTCCCAAGGTTTGCTAATGACAATGTTTGTGTTGAAACGAAATTAGATCCGGCCTGTAAACTCCGATTAAATTCGTTTGCTAATGACAATGTTTGTGTTGAAACATATCCAGTCTTTGGCTAAAAGTATTTTAACTAGGCGTTTGCTAATGACAATGTTTGTGTTGAAACAATTTAGACGACGCTCTAAATCAAGCCGCTAAAAAGTTTGCTAATGACAATGTTTGTGTTGAAACAACAACATCTTTGAGCAACGCTTTTAGGCAGATGGGGTTTGCTAATGACAATGTTTGTGTTGAAACAAAACATAAATTGGCTAATTGTAAAACTAAAAAATGTGTTTGCTAATGACAATGTTTGTGTTGAAACTATAAATAACTAATTTTCAAAAACAAAAATATATCTGTTTGCTAATGACAATGTTTGTGTTGAAACACAAAAATATTTTTTTCTCCAGCAAAAAAAGCAAATGTTTGCTAATGACAATGTTTGTGTTGAAACTCCTGTTTTAGAGCTTATTTACGCTATCCAGACCTGTTTGCTAATGACAATGTTTGTGTTGAAACTTTTCTGGTTCTGATAGCGTTGTACTTTATTGCACGTTTGCTAATGACAATGTTTGTGTTGAAACGGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTACGTTTGCTAATGACAATGTTTGTGTTGAAACAATCATATCAAAAGACGCTATCAAAAAATTTTATGGCGTTTGCTAATGACAATGTTTGTGTTGAAACTCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTTGTTTGCTAATGACATGTTTGTGTTGAAACTTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAACGTTTGCTAATGACAATGTTTGTGTTGAAACAACTACGCAGGGTATTATAAAAAAGGCTGCCTAAAGTTTGCTAATGACAATGTTTGTGTTGAAACTTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTGGTTTGCTAATGACAATGTTTGTGTTGAAACAAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGAGTTTGCTAATGACAATGTTTGTGTTGAAACGGGATATTGATTCGCGGAGTTGGAACTTTGTCCTACGTTTGCTAATGACAATGTTTGTGTTGAAACAATCATATCAAAAGACGCTATCAAAAAATTTTATGGCGTTTGCTAATGACAATGTTTGTGTTGAAACTCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTTGTTTGCTAATGACATGTTTGTGTTGAAACTTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAACGTTTGCTAATGACAATGTTTGTGTTGAAACAACTACGCAGGGTATTATAAAAAAGGCTGCCTAAAGTTTGCTAATGACAATGTTTGTGTTGAAACTTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTGGTTTGCTAATGACAATGTTTGTGTTGAAACAGTTGATTTTTTAGAAGCAAAAGAGTTTTCAAAAAAGTTTGCTAATGACAATGTTTGTGTTGAAACAAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGAGTTTGCTAATGACAATGTTTGTGTTGAAACGGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTACGTTTGCTAATGACAATGTTTGTGTTGAAACGTTAATGAAAACGAAATGGCTACTTATATAAAAGCGTTTGCTAATGACAATGTTTGTGTTGAAACGGCGGTATTGGAAGTATAAAAATTAATAACGTTGTTGTTTGCTAATTTTTAACACAAAATTGTCTG

>LS483431|2|2|661549-665060|PILER-CR
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACCATATCATCTATGCTGATACTTTTGCCATTTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAAGCTAAATGACCATTAACAATAAACATATAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAGCCTTAGACTGGGCTATTAAATCTGGTAAATACG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTACACTCTTTAAAAATACTGCTATTATCTATTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATTAAGATTCTAACCTTTTTTAGATATAAGAAGTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CAAAATAAAAAAGAAGGAAAAGCTAAATTTAAAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATCTTGCAGCTAGCAATATTCTTATTATATTTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATAGGATACTTCCAGCCATACAAAGAACTATAAACG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTATCATAACGCCACTCATTTGCCACCGCCAAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGTGTTTTTTTATGTTTTTTGGGGTTTTCCCAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAAATTAGATCCGGCCTGTAAACTCCGATTAAATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATATCCAGTCTTTGGCTAAAAGTATTTTAACTAGGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTTAGACGACGCTCTAAATCAAGCCGCTAAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AACAACATCTTTGAGCAACGCTTTTAGGCAGATGGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAACATAAATTGGCTAATTGTAAAACTAAAAAATGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAATAACTAATTTTCAAAAACAAAAATATATCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACAAAAATATTTTTTTCTCCAGCAAAAAAAGCAAAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCTGTTTTAGAGCTTATTTACGCTATCCAGACCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTGGTTCTGATAGCGTTGTACTTTATTGCAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTT
GTTTGCTAATGACATGTTTGTGTTGAAACT	TGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAACG
TTTGCTAATGACAATGTTTGTGTTGAAACA	ACTACGCAGGGTATTATAAAAAAGGCTGCCTAAAG
TTTGCTAATGACAATGTTTGTGTTGAAACT	TTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTGG
TTTGCTAATGACAATGTTTGTGTTGAAACA	AAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGAG
TTTGCTAATGACAATGTTTGTGTTGAAACG	GGATATTGATTCGCGGAGTTGGAACTTTGTCCTACG
TTTGCTAATGACAATGTTTGTGTTGAAACA	ATCATATCAAAAGACGCTATCAAAAAATTTTATGGCG
TTTGCTAATGACAATGTTTGTGTTGAAACT	CTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTTG
TTTGCTAATGACATGTTTGTGTTGAAACTT	GTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAACGT
TTGCTAATGACAATGTTTGTGTTGAAACAA	CTACGCAGGGTATTATAAAAAAGGCTGCCTAAAGT
TTGCTAATGACAATGTTTGTGTTGAAACTT	TTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTGGT
TTGCTAATGACAATGTTTGTGTTGAAACAG	TTGATTTTTTAGAAGCAAAAGAGTTTTCAAAAAAGT
TTGCTAATGACAATGTTTGTGTTGAAACAA	AAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGAGT
TTGCTAATGACAATGTTTGTGTTGAAACGG	GATAGTGATTCGCGGAGTTGGAACTTTGTCCTACGT
TTGCTAATGACAATGTTTGTGTTGAAACGT	TAATGAAAACGAAATGGCTACTTATATAAAAGCGT
TTGCTAATGACAATGTTTGTGTTGAAAC

>LS483431|2|2|661549-664075|CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACCATATCATCTATGCTGATACTTTTGCCATTTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAAGCTAAATGACCATTAACAATAAACATATAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAGCCTTAGACTGGGCTATTAAATCTGGTAAATACG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTACACTCTTTAAAAATACTGCTATTATCTATTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATTAAGATTCTAACCTTTTTTAGATATAAGAAGTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CAAAATAAAAAAGAAGGAAAAGCTAAATTTAAAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATCTTGCAGCTAGCAATATTCTTATTATATTTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATAGGATACTTCCAGCCATACAAAGAACTATAAACG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTATCATAACGCCACTCATTTGCCACCGCCAAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGTGTTTTTTTATGTTTTTTGGGGTTTTCCCAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAAATTAGATCCGGCCTGTAAACTCCGATTAAATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATATCCAGTCTTTGGCTAAAAGTATTTTAACTAGGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTTAGACGACGCTCTAAATCAAGCCGCTAAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AACAACATCTTTGAGCAACGCTTTTAGGCAGATGGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAACATAAATTGGCTAATTGTAAAACTAAAAAATGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAATAACTAATTTTCAAAAACAAAAATATATCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACAAAAATATTTTTTTCTCCAGCAAAAAAAGCAAAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCTGTTTTAGAGCTTATTTACGCTATCCAGACCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTGGTTCTGATAGCGTTGTACTTTATTGCAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC
GTTTGCTAATGACAATGTTTGTGTTGAAACTCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTTGTTTGCTAATGACATGTTTGTGTTGAAACTTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAACGTTTGCTAATGACAATGTTTGTGTTGAAAC	AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATATTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC
GTTTGCTAATGACAATGTTTGTGTTGAAACTCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTTGTTTGCTAATGACATGTTTGTGTTGAAACTTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAACGTTTGCTAATGACAATGTTTGTGTTGAAAC	AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGTTGATTTTTTAGAAGCAAAAGAGTTTTCAAAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GTTAATGAAAACGAAATGGCTACTTATATAAAAGC


>LS483431|2|2|661549-665126|CRT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACCATATCATCTATGCTGATACTTTTGCCATTTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAAGCTAAATGACCATTAACAATAAACATATAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAGCCTTAGACTGGGCTATTAAATCTGGTAAATACG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTACACTCTTTAAAAATACTGCTATTATCTATTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATTAAGATTCTAACCTTTTTTAGATATAAGAAGTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CAAAATAAAAAAGAAGGAAAAGCTAAATTTAAAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATCTTGCAGCTAGCAATATTCTTATTATATTTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATAGGATACTTCCAGCCATACAAAGAACTATAAACG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTATCATAACGCCACTCATTTGCCACCGCCAAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGTGTTTTTTTATGTTTTTTGGGGTTTTCCCAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAAATTAGATCCGGCCTGTAAACTCCGATTAAATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATATCCAGTCTTTGGCTAAAAGTATTTTAACTAGGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTTAGACGACGCTCTAAATCAAGCCGCTAAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AACAACATCTTTGAGCAACGCTTTTAGGCAGATGGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAACATAAATTGGCTAATTGTAAAACTAAAAAATGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAATAACTAATTTTCAAAAACAAAAATATATCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACAAAAATATTTTTTTCTCCAGCAAAAAAAGCAAAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCTGTTTTAGAGCTTATTTACGCTATCCAGACCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTGGTTCTGATAGCGTTGTACTTTATTGCAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTT
GTTTGCTAATGACATGTTTGTGTTGAAACT	TGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATATTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTT
GTTTGCTAATGACATGTTTGTGTTGAAACT	TGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGTTGATTTTTTAGAAGCAAAAGAGTTTTCAAAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GTTAATGAAAACGAAATGGCTACTTATATAAAAGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGCGGTATTGGAAGTATAAAAATTAATAACGTTGTT
GTTTGCTAATTTTTAACACAAAATTGTCTG

>LS483431|2|3|664177-664536|CRISPRCasFinder
	TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACCATATCATCTATGCTGATACTTTTGCCATTTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAAGCTAAATGACCATTAACAATAAACATATAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAGCCTTAGACTGGGCTATTAAATCTGGTAAATACG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTACACTCTTTAAAAATACTGCTATTATCTATTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATTAAGATTCTAACCTTTTTTAGATATAAGAAGTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CAAAATAAAAAAGAAGGAAAAGCTAAATTTAAAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATCTTGCAGCTAGCAATATTCTTATTATATTTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATAGGATACTTCCAGCCATACAAAGAACTATAAACG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTATCATAACGCCACTCATTTGCCACCGCCAAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGTGTTTTTTTATGTTTTTTGGGGTTTTCCCAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAAATTAGATCCGGCCTGTAAACTCCGATTAAATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATATCCAGTCTTTGGCTAAAAGTATTTTAACTAGGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTTAGACGACGCTCTAAATCAAGCCGCTAAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AACAACATCTTTGAGCAACGCTTTTAGGCAGATGGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAACATAAATTGGCTAATTGTAAAACTAAAAAATGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAATAACTAATTTTCAAAAACAAAAATATATCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACAAAAATATTTTTTTCTCCAGCAAAAAAAGCAAAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCTGTTTTAGAGCTTATTTACGCTATCCAGACCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTGGTTCTGATAGCGTTGTACTTTATTGCAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC
GTTTGCTAATGACAATGTTTGTGTTGAAACTCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTTGTTTGCTAATGACATGTTTGTGTTGAAACTTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAACGTTTGCTAATGACAATGTTTGTGTTGAAAC	AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATATTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC
GTTTGCTAATGACAATGTTTGTGTTGAAACTCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTTGTTTGCTAATGACATGTTTGTGTTGAAACTTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAACGTTTGCTAATGACAATGTTTGTGTTGAAAC	AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGTTGATTTTTTAGAAGCAAAAGAGTTTTCAAAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GTTAATGAAAACGAAATGGCTACTTATATAAAAGC


>LS483431|2|4|664638-665060|CRISPRCasFinder
	TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTCCGTTATCTACCTCTGGCGCCATGCTCTCTCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACCATATCATCTATGCTGATACTTTTGCCATTTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAAGCTAAATGACCATTAACAATAAACATATAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAGCCTTAGACTGGGCTATTAAATCTGGTAAATACG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTACACTCTTTAAAAATACTGCTATTATCTATTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATTAAGATTCTAACCTTTTTTAGATATAAGAAGTAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CAAAATAAAAAAGAAGGAAAAGCTAAATTTAAAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATCTTGCAGCTAGCAATATTCTTATTATATTTATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGTTTTAGATATTACAGTTATAGGGCTATTTATT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATAGGATACTTCCAGCCATACAAAGAACTATAAACG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTATCATAACGCCACTCATTTGCCACCGCCAAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGTGTTTTTTTATGTTTTTTGGGGTTTTCCCAAG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GAAATTAGATCCGGCCTGTAAACTCCGATTAAATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATATCCAGTCTTTGGCTAAAAGTATTTTAACTAGGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATTTAGACGACGCTCTAAATCAAGCCGCTAAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AACAACATCTTTGAGCAACGCTTTTAGGCAGATGGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAACATAAATTGGCTAATTGTAAAACTAAAAAATGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAATAACTAATTTTCAAAAACAAAAATATATCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ACAAAAATATTTTTTTCTCCAGCAAAAAAAGCAAAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCTGTTTTAGAGCTTATTTACGCTATCCAGACCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTGGTTCTGATAGCGTTGTACTTTATTGCAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC
GTTTGCTAATGACAATGTTTGTGTTGAAACTCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTTGTTTGCTAATGACATGTTTGTGTTGAAACTTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAACGTTTGCTAATGACAATGTTTGTGTTGAAAC	AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATATTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCATATCAAAAGACGCTATCAAAAAATTTTATGGC
GTTTGCTAATGACAATGTTTGTGTTGAAACTCTGAATAGCTGTTTACTTCAACTTTAGCTCTAGTTTGTTTGCTAATGACATGTTTGTGTTGAAACTTGTTGTTTGCCGTTTTTGATAGCTCAAGCTTTAACGTTTGCTAATGACAATGTTTGTGTTGAAAC	AACTACGCAGGGTATTATAAAAAAGGCTGCCTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTCTTTTAGCTCTTTGTAGCGTTTTGTGGTGTG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGTTGATTTTTTAGAAGCAAAAGAGTTTTCAAAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AAAAGGGTTAGAAGTTTTAGCAAATTTAAAACAAGA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GGGATAGTGATTCGCGGAGTTGGAACTTTGTCCTAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GTTAATGAAAACGAAATGGCTACTTATATAAAAGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483431.1\|SQH29982.1\|652952_653669_+\|CRISPR-associated-protein-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
LS483431.1\|SQH29991.1\|665192_665663_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483431.1\|SQH29992.1\|665797_666289_-\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
LS483431.1\|SQH29987.1\|659413_659899_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
LS483431.1\|SQH29998.1\|670039_671101_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|273680
LS483431.1\|SQH29989.1\|660905_661205_+\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LS483431.1\|SQH29993.1\|666408_667248_+\|phage-head-morphogenesis-protein,-SPP1-gp7-family	unknown	unknown	gnl\|CDD\|213641
LS483431.1\|SQH29981.1\|652492_652666_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483431.1\|SQH29986.1\|657035_659417_+\|CRISPR-associated-helicase-Cas3-domain-containing-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
LS483431.1\|SQH30000.1\|671674_671965_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483431.1\|SQH29980.1\|652096_652342_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483431.1\|SQH29988.1\|659940_660909_+\|CRISPR-associated-protein-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
LS483431.1\|SQH29983.1\|653658_655362_+\|Uncharacterised-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
LS483431.1\|SQH29985.1\|656286_657048_+\|CRISPR-associated-protein-Cas5,-hmari-subtype	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
LS483431.1\|SQH29997.1\|668361_669936_-\|Mu-like-prophage-FluMu-protein-gp28	unknown	unknown	gnl\|CDD\|222859
LS483431.1\|SQH29996.1\|667948_668365_-\|phage-protein,-HK97-gp10-family	unknown	unknown	gnl\|CDD\|377415
LS483431.1\|SQH29984.1\|655345_656290_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
LS483431.1\|SQH29999.1\|671232_671616_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379643
LS483431.1\|SQH29995.1\|667581_667788_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483431.1\|SQH29994.1\|667223_667541_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LS483431.1\|SQH29982.1\|652952_653669_+\|CRISPR-associated-protein-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.62733e-14
LS483431.1\|SQH29997.1\|668361_669936_-\|Mu-like-prophage-FluMu-protein-gp28	gnl\|CDD\|222859	PHA02535, P, terminase ATPase subunit; Provisional.	4.61231e-48
LS483431.1\|SQH29992.1\|665797_666289_-\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	4.00609e-14
LS483431.1\|SQH29987.1\|659413_659899_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	7.70302e-58
LS483431.1\|SQH29998.1\|670039_671101_-\|phage-portal-protein	gnl\|CDD\|273680	TIGR01540, Phage-like_element_PBSX_protein_XkdE, phage portal protein, PBSX family. This model represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa. This family shows clear homology to TIGR01537. The alignment for this group was trimmed of poorly alignable N-terminal sequence of about 50 residues and of C-terminal regions present in some but not all members of up 180 residues. [Mobile and extrachromosomal element functions, Prophage functions].	1.61514e-28
LS483431.1\|SQH29989.1\|660905_661205_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.91734e-16
LS483431.1\|SQH29986.1\|657035_659417_+\|CRISPR-associated-helicase-Cas3-domain-containing-protein	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	7.38596e-29
LS483431.1\|SQH29993.1\|666408_667248_+\|phage-head-morphogenesis-protein,-SPP1-gp7-family	gnl\|CDD\|213641	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions].	0.000174967
LS483431.1\|SQH29988.1\|659940_660909_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.71488e-139
LS483431.1\|SQH29985.1\|656286_657048_+\|CRISPR-associated-protein-Cas5,-hmari-subtype	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.45768e-34
LS483431.1\|SQH29996.1\|667948_668365_-\|phage-protein,-HK97-gp10-family	gnl\|CDD\|377415	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component. This family of proteins is found in the caudovirales. It may be a tail component.	0.00231216
LS483431.1\|SQH29984.1\|655345_656290_+\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.57058e-37
LS483431.1\|SQH29999.1\|671232_671616_+\|Uncharacterised-protein	gnl\|CDD\|379643	pfam14550, Peptidase_S78_2, Putative phage serine protease XkdF. This domain is largely found on phage proteins. In a number of cases the domain is associated with a SAM-dependent methyltransferase. Members are serine peptidases.	2.17588e-25

>LS483431.1|SQH29989.1|660905_661205_+|CRISPR-associated-protein-Cas2
MKNYNYAYVFYDISDKESEAGKRRVTKVFKLCKKYFLHHQKSVFKGEITPANFIKFKSAIEKLIDKNIDVITVLRLIRKDDVDEISIGGLDFVKNEMFL
>LS483431.1|SQH29988.1|659940_660909_+|CRISPR-associated-protein-Cas1
MGELSRKDNSLAFKNEKGTIYIPIAGIREIYCMNEVSINSKLLDFLAKNGITIHFFNYYGNYSGSFYPKKHLISGRVIISQVEALANRMIVVKSIVKGIALNMHEVLYHYYRHGKTELKPLLDYLKFRVSNMLINANTIPQIMFIEGQIWSKFYDSFELFLDESFSLGKRVKRPPDNPMNAMISFGNSLLYTKTISAIYQTHLEQSISYLHESSDARFSLSLDLSEVFKPIIVFKTVFELVNLKKINIKKHFEKKIDFCLLNESGRKIFVESFEERLNEPFLHSKLNRKISYKTALKLEGYKLIKFICESREFVPFSLKDKQ
>LS483431.1|SQH29987.1|659413_659899_+|CRISPR-associated-protein-Cas4
MKITGTLINYFFHCKRQCYLFYNRINLEDNSEDVKIGRVLHEIKFEDDIKFENIALDKITDEYVIEFKKSDSDETASMWQLLFYLKKLKEIGILRKGLLEFGENKKLPTKRLKVELTDDKELELEQIYSQISELMSLKTPPDPLKSSLKCKKCAYFSYCFI
>LS483431.1|SQH29986.1|657035_659417_+|CRISPR-associated-helicase-Cas3-domain-containing-protein
MFLLGDYLAHTSPHKDPETLQAHCDLAKEYLQKIKNGKNLNNIIKNLANKILDDDVILEFFDDFIVYHDLGKTNPAFQKLKMKNENPKFSKADGETTHSKQSFYMLKDKYKDFILNYKDENIRETVCVFYYLLSNVLNHHGHLKDGFDDKYLNKDSDKLDKKFCNAEKRVNFDIELFIFIKLHFSLLIASDFYATSEYMNDIKIDDLGVFDKDKKEKIYSKFREFYSSLKPRSDIDSLRSEIFKNTSETLYDNLDKNIFYLEAPTGSGKTLTSLNLALNLLNLNSNLNKIFYVFPFNTLISQSKSIFETIFGDEFDISIINSITPPKFSTENEQENSESNYDKTYINRVFYNHPFILTSHVALFKTLFGISKEENYGLFSLANSVIILDEIQSYRSNLWEFMALFFDSFAKHLNIKFIIMSATLPKISNLLKNSDDKWCDLLPNSNYFQNTLFKDRVKADFSLLNIGKNDLFDSIVGKITESKKDKILVEFIKKPSAREFYNFIRFKFDDYDIFELSGDDNKLYQKKVIAKLKGSNTKAILVATQVIEAGVDIDMDIGFKDIATFESEEQFMGRINRSALKPGSLAYFFDYDDASAIYKQDSRIKFSLKDNELKKCLIDKNFIPYYDKLLKELKSENSRVNSGFNNIRENFQDDIGNLNFIQISKNMQLINDDRIRIFLPFKIDVSSFDMSEYGNIEHFMDGDFLDGKKIWEAIICLNEVKEYGKRKIEALSLNSLADIFCFNILSSEAKKLPNVKIEYGYVYIEDYDGLIDEESKLDRTALAKKYKNEDLIL
>LS483431.1|SQH29985.1|656286_657048_+|CRISPR-associated-protein-Cas5,-hmari-subtype
MRAVSFKLSGKFAHFKKPDVNEYAYFTYNNIPKPTLLGLLGAIIGLKGYAQKTYKDKKDKKSLFNNENSSNEPEFYERLKHLKICIIPLVKYGRFSKKIQIFNNGVGYASGEDGGNLIVREQWLENPSWQILIEDDGSAEFETVSRYLFDKKAKFIPYLGKNDHFADISEVEKIDLAESKKDRISIKSLFLDDLAEQVDDPDDEISYLFNEFYPISFNELMFYELKKVAFTNQICRAIDGKWYEFKDGTICFF
>LS483431.1|SQH29984.1|655345_656290_+|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair
MKLTSRVYGIIGIKSTMANWNADFTGRPKSTGNGDIFASDKALKYPMKKMWESYGKNILFVKSLKQVKDKDGKSKLVPNTLGERYSLLFGDIKEVKSTKEVLANLFNCIDVKNFGATFPENGYNLSITGAVQIGQGFNKFEDINIEVQNILSPFADSRANEKNKDGEDASQSTLGTKIVTDEAHYFYGFCINPLAYNDYKEILGDDFGYDEDDYAEFKKAARFCATYFNSNSKFGCENEFAMFIETDSDAYLPDLSAYMDFISQGKDRIVNLEKIEKMLESSDVKKVEIYYNPLSLDVETKFDKFDIYSGNKIQ
>LS483431.1|SQH29983.1|653658_655362_+|Uncharacterised-protein
MLFELLDEFKKRLEKNKDIVTQNHVLKDGVYARISGEKCEIFYVKTTIEKIDGKPHRKTNLYKQNGDIASYDDRDWFEQADYLSSLWDMDKAILPNKKFHSINFLSLFFKLEKPEHVRENLEKYLNVFIDYGKFKTSKDKEKNKEILSFHSDYIKDENRQSLIANSVVLCQKYFNDIIHFAGQNNFKKCYIKFFINEDLKLYEKESRIYIDLKIFNKNEYNIKYNNEILGLSNFNMGMNNNKPFLRHKTRPHEIPHAISQKDALSIKMLFDWLGSQNKNDICDFDSIFMYKSNKDSKALIKDFEYVPVSKSKFKFDTFRIKNFMDIENGEREILSFDDFKQVIDEQLYQKRLFSNLYKDKIKVSKLLSEDMQNILYQTRHSMIEYFEKFNSNEFYYVIQKYSNDFIKVAMQDGEFGRLNAKKSINLLLSIKETKGEKVDIDEIKNRVISALTDDNITKLNGNEYYFLVGNLAMRLVNKSKGWKKTFALTESYTKARNTKKLKMILFSDFDRYKYDIFIGDEILRKAFLLAQNCEDLVMSNSDQQMVLIGIVAKSIIKKSGEKDEVNE
>LS483431.1|SQH29982.1|652952_653669_+|CRISPR-associated-protein-Cas6
MKIYQLKVFLKLNQNVDFVNSPEFLSSNLHKSMLGDEALRSIHMQRYLKPYSIGFLYGMKGKKDGFTSGEDMYFYVRSIDESFISKLRICLENSKNLGFNVYASKLEVLDSKRIDCLYTMSPATVVLKEGDKTIPWRRENSDIAALKDALILNLKNKYEYFLDKKIEITDDIIELIEIKTNRAFAFKYKNGKIYAYRYQIHFSGNKTAQEFANIAMILGVGVKNTLGFGFCMRSKNVV
>LS483431.1|SQH29981.1|652492_652666_-|Uncharacterised-protein
MEDIKKFLWIIFLITLAIFVMANIEEMYIQLISFIVLFPFYIWLDYKLNPHKYKKDS
>LS483431.1|SQH29980.1|652096_652342_-|Uncharacterised-protein
MAWTRSGHPVSGALVGGGGRTGSRTAKAFAKQINHPGTKAQPYLEDGLNNYISSSGLARAKEALAKDVRNKVLNDIKKALK
>LS483431.1|SQH29991.1|665192_665663_+|Uncharacterised-protein
MIKKLTDKRLSEITKIPCGTIAGWKRSDGYKKDIYLFFKNLDPEFLIENFGAKTPIIPLLDKEVVGAIGISQGTLYGWKNGKGHRKKLYDFIAQFSAKEILDICAKEKDSINDKTLSKITKIPYQTLQGWKKYEDRQVLYKLLKSFTQEELSSFFS
>LS483431.1|SQH29992.1|665797_666289_-|DNA-adenine-methylase
MDIKNGKLKPKNDIQKAAFYFYLLATSFGAKGDNFAIGNSKSAKNIHRDFFANSKRLKRAFIENMSYEKLIKGYDSSDTLFYVDPPYVGAENYYKMVRGFGINEHENLAKILANVKGKFMLSYNDCEMVRSLYKDFKFKELKVNYSLNSKYRSVKNELLIMNF
>LS483431.1|SQH29993.1|666408_667248_+|phage-head-morphogenesis-protein,-SPP1-gp7-family
MKALFGKSLLSFANDNVCVETRANMAETLKEKFKGVLSANTSYFEGVSDHIISQMQNIARVNQASKYGVKHYKVVARIDNRTSDICRSMNGRIIPASHIETQSNNIQNAKDINEKKAAAIWRNEPFFGKILPSNFGLPPYHFRCRTELVPVWINEEEIDGVKMKNTSPLSKDEVVKHIDKTGVERYANKKTFNHSISSNKRKISSSDSVKALNSILKIAPHKDYQNRSVAISQNGYFMIFNGDYLYNIFKPSRNLEKYFKDSAVLNKVEIIKWKFSIFA
>LS483431.1|SQH29994.1|667223_667541_+|Uncharacterised-protein
MEIFNICLAHGWAIESVKNGNFGENAKYDLFAQFDVFYGQIAWIYDICTPSDETIKECEKIAIFKQMCEFNVYISDDNDEGWTKKVNFTGTFIDALEYIKANFGK
>LS483431.1|SQH29995.1|667581_667788_+|Uncharacterised-protein
MTIIEAFSKTKTLQNQNRNAVVKIVKKNYSGYDVQIEPVELTVIKNSLEMISQNANSFMANVNAKYGK
>LS483431.1|SQH29996.1|667948_668365_-|phage-protein,-HK97-gp10-family
MNKIFKNFMFKVGAEVVNDSKAIAPFKTGNLKKDIQVFKADQTSVTIGNSKLAPYAKFVHFGTKPHIIRVKKAKALANKKAGLCFGKQVNHPGTKAQPYLEDGLNNYISSSGLARAKEDLAKDIRDKILNDVKKALKL
>LS483431.1|SQH29997.1|668361_669936_-|Mu-like-prophage-FluMu-protein-gp28
MTYTKEFKEECVNLLKSGVSALALTRQTGVSRPTLAKWQKDYEKENFSIENAIKFTKQKIEELSKKASPTSDDVVMLSELISALAKLENGVKKVKSIKDNPRPIISMNSPTALELKKRILEKGNLYAYQKEFLQSDDSFRIVLKSRQIGFSYVSSADALIGAVAGRNQLFLSASEEQALILMRYLRKWASEFGVEFAKDSEYEITLPNGAIIKALAHNFRTVQGFTGDIWMDEFAWYPNPKKIWHAFVPSIGAIKGRLTILSTPFEERSLFHELYSDESKYYMFKRFCVSIYRATQDGLDFDLETMRNLFDADTWASAYECQFVDDESSLLSIALIKSCVDDKSHYYTPKSNETIYAGYDIGRVSDRSTLAGVILENGVYKTAIMDVLAKAKFDEQKEHLSAFLRTYPMSVLRIDKTGIGLNLAENIHDKFKSRVTGVWFSNTRKEEMALNLKKAFEDKLISIPNDPLLIADIHAIKRTIGAKSFKYDAKRNEYGHADRFWALALALSHVSVVKAKKSGGAIII
>LS483431.1|SQH29998.1|670039_671101_-|phage-portal-protein
MNRFFIEKDAKQSLQIGEETTSTSGIIEPFFSFNQLLEAYYANVYHRRAIKIKAGLLSQIETEESDLEKFLPAGVSPKNFLNTFAFNLELYGNAAIEKAGGSTSYLFYNLPANQMRLKKDRRLFQKVNEKIVELEGYHFFYYSPNSRYYGEPDYLAALQQILINQKADLYNDKFFDNGARPDLAIIYENAEPSSEQITAFKEFFGNSFRGYNNSHKTLIIYGENGASDKDAKIRFEDLGKVTDLSFKELKSVSRDEIASAHGVPPRLIGVIQGSALGGSGELSGQLQMFNELEIKPKIEMIESFFTNIGVKVTLKAMDTTSFKDDGEIMTTLVGSGILSVEEARSILGWQKNI
>LS483431.1|SQH29999.1|671232_671616_+|Uncharacterised-protein
MAKRLKDIAITHISLVKEGANGKSVIYKSKDALEDYFRSVKIAKNDTEKGIVYGIVYSPDEIDTQGDAASAAEIEKAAFSFMKGLNIKNVDRDHNFKPEGAYICESWIVKSGDPLFPNEKEGSWAVT
>LS483431.1|SQH30000.1|671674_671965_+|Uncharacterised-protein
MAGTAIKEEDGLLKSILKGFEAILKGFNAEKNIKEGEQLEREKEVAEVIKGLSSIKEKLDELDSLKKDMNELKNELKKSKQENATQTNENDIGGLL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483431_2	2.13\|662365\|36\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	662365-662400	36	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	13447-13482	0	1.0
LS483431_2	2.13\|662365\|36\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	662365-662400	36	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	75018-75053	0	1.0
LS483431_2	2.43\|664338\|36\|LS483431\|PILER-CR	664338-664373	36	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	10085-10120	0	1.0
LS483431_2	2.43\|664338\|36\|LS483431\|PILER-CR	664338-664373	36	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	78380-78415	0	1.0
LS483431_2	2.51\|664866\|36\|LS483431\|PILER-CR	664866-664901	36	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	10085-10120	0	1.0
LS483431_2	2.51\|664866\|36\|LS483431\|PILER-CR	664866-664901	36	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	78380-78415	0	1.0
LS483431_2	2.57\|664337\|36\|LS483431\|CRT,CRISPRCasFinder	664337-664372	36	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	10085-10120	0	1.0
LS483431_2	2.57\|664337\|36\|LS483431\|CRT,CRISPRCasFinder	664337-664372	36	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	78380-78415	0	1.0
LS483431_2	2.65\|664864\|36\|LS483431\|CRT,CRISPRCasFinder	664864-664899	36	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	10085-10120	0	1.0
LS483431_2	2.65\|664864\|36\|LS483431\|CRT,CRISPRCasFinder	664864-664899	36	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	78380-78415	0	1.0
LS483431_1	1.8\|649436\|36\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649436-649471	36	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	38445-38480	2	0.944
LS483431_1	1.8\|649436\|36\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649436-649471	36	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	32993-33028	2	0.944
LS483431_2	2.42\|664273\|35\|LS483431\|PILER-CR	664273-664307	35	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	5696-5730	2	0.943
LS483431_2	2.42\|664273\|35\|LS483431\|PILER-CR	664273-664307	35	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	22290-22324	2	0.943
LS483431_2	2.49\|664735\|35\|LS483431\|PILER-CR	664735-664769	35	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	5696-5730	2	0.943
LS483431_2	2.49\|664735\|35\|LS483431\|PILER-CR	664735-664769	35	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	22290-22324	2	0.943
LS483431_2	2.56\|664272\|35\|LS483431\|CRT,CRISPRCasFinder	664272-664306	35	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	5696-5730	2	0.943
LS483431_2	2.56\|664272\|35\|LS483431\|CRT,CRISPRCasFinder	664272-664306	35	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	22290-22324	2	0.943
LS483431_2	2.63\|664733\|35\|LS483431\|CRT,CRISPRCasFinder	664733-664767	35	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	5696-5730	2	0.943
LS483431_2	2.63\|664733\|35\|LS483431\|CRT,CRISPRCasFinder	664733-664767	35	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	22290-22324	2	0.943
LS483431_2	2.4\|661775\|34\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	661775-661808	34	NZ_CP041064	Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence	88628-88661	7	0.794
LS483431_2	2.4\|661775\|34\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	661775-661808	34	NZ_CP018876	Bacillus megaterium strain JX285 plasmid 3, complete sequence	134189-134222	7	0.794
LS483431_2	2.4\|661775\|34\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	661775-661808	34	CP041518	Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence	102025-102058	7	0.794
LS483431_2	2.42\|664273\|35\|LS483431\|PILER-CR	664273-664307	35	NZ_CP039041	Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence	68523-68557	7	0.8
LS483431_2	2.42\|664273\|35\|LS483431\|PILER-CR	664273-664307	35	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	109569-109603	7	0.8
LS483431_2	2.49\|664735\|35\|LS483431\|PILER-CR	664735-664769	35	NZ_CP039041	Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence	68523-68557	7	0.8
LS483431_2	2.49\|664735\|35\|LS483431\|PILER-CR	664735-664769	35	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	109569-109603	7	0.8
LS483431_2	2.56\|664272\|35\|LS483431\|CRT,CRISPRCasFinder	664272-664306	35	NZ_CP039041	Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence	68523-68557	7	0.8
LS483431_2	2.56\|664272\|35\|LS483431\|CRT,CRISPRCasFinder	664272-664306	35	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	109569-109603	7	0.8
LS483431_2	2.63\|664733\|35\|LS483431\|CRT,CRISPRCasFinder	664733-664767	35	NZ_CP039041	Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence	68523-68557	7	0.8
LS483431_2	2.63\|664733\|35\|LS483431\|CRT,CRISPRCasFinder	664733-664767	35	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	109569-109603	7	0.8
LS483431_2	2.33\|663680\|36\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	663680-663715	36	NZ_CP010910	Candidatus Pantoea carbekii strain US plasmid pBMSBPS3, complete sequence	1933-1968	9	0.75
LS483431_2	2.50\|664800\|36\|LS483431\|PILER-CR	664800-664835	36	MK448665	Streptococcus phage Javan1, complete genome	9373-9408	9	0.75
LS483431_2	2.64\|664798\|36\|LS483431\|CRT,CRISPRCasFinder	664798-664833	36	MK448665	Streptococcus phage Javan1, complete genome	9373-9408	9	0.75
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_CP031992	Acinetobacter haemolyticus strain 2126ch plasmid pAhaem2126chf, complete sequence	23053-23087	10	0.714
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_CP027531	Acinetobacter baumannii strain AR_0088 plasmid unnamed1, complete sequence	81105-81139	10	0.714
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_CP029396	Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence	349022-349056	10	0.714
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_CP050386	Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence	74418-74452	10	0.714
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_CP014652	Acinetobacter sp. DUT-2 plasmid unnamed1, complete sequence	100406-100440	10	0.714
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_CP020596	Acinetobacter baumannii strain HWBA8 plasmid pHWBA8_1, complete sequence	120396-120430	10	0.714
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_CP040260	Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence	178716-178750	10	0.714
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_CP031980	Acinetobacter haemolyticus strain AN4 plasmid pAhaemAN4d, complete sequence	34841-34875	10	0.714
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_CP022285	Acinetobacter baumannii strain 7804 plasmid pAba7804b, complete sequence	141354-141388	10	0.714
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_MK323043	Acinetobacter baumannii strain Acb-45063 plasmid pAb45063_b, complete sequence	171596-171630	10	0.714
LS483431_1	1.5\|649240\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649240-649274	35	NZ_CP018872	Acinetobacter haemolyticus strain TJS01 plasmid pAHTJS1, complete sequence	22243-22277	10	0.714
LS483431_1	1.7\|649371\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	649371-649405	35	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	53843-53877	10	0.714
LS483431_2	2.14\|662431\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	662431-662465	35	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	285189-285223	10	0.714
LS483431_2	2.14\|662431\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	662431-662465	35	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	161020-161054	10	0.714
LS483431_2	2.14\|662431\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	662431-662465	35	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	225396-225430	10	0.714
LS483431_2	2.14\|662431\|35\|LS483431\|PILER-CR,CRISPRCasFinder,CRT	662431-662465	35	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	179436-179470	10	0.714

1. spacer 2.13|662365|36|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 0, identity: 1.0

attaagattctaaccttttttagatataagaagtat	CRISPR spacer
attaagattctaaccttttttagatataagaagtat	Protospacer
************************************

2. spacer 2.13|662365|36|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 0, identity: 1.0

attaagattctaaccttttttagatataagaagtat	CRISPR spacer
attaagattctaaccttttttagatataagaagtat	Protospacer
************************************

3. spacer 2.43|664338|36|LS483431|PILER-CR matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagggttagaagttttagcaaatttaaaacaaga	CRISPR spacer
aaaagggttagaagttttagcaaatttaaaacaaga	Protospacer
************************************

4. spacer 2.43|664338|36|LS483431|PILER-CR matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagggttagaagttttagcaaatttaaaacaaga	CRISPR spacer
aaaagggttagaagttttagcaaatttaaaacaaga	Protospacer
************************************

5. spacer 2.51|664866|36|LS483431|PILER-CR matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagggttagaagttttagcaaatttaaaacaaga	CRISPR spacer
aaaagggttagaagttttagcaaatttaaaacaaga	Protospacer
************************************

6. spacer 2.51|664866|36|LS483431|PILER-CR matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagggttagaagttttagcaaatttaaaacaaga	CRISPR spacer
aaaagggttagaagttttagcaaatttaaaacaaga	Protospacer
************************************

7. spacer 2.57|664337|36|LS483431|CRT,CRISPRCasFinder matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagggttagaagttttagcaaatttaaaacaaga	CRISPR spacer
aaaagggttagaagttttagcaaatttaaaacaaga	Protospacer
************************************

8. spacer 2.57|664337|36|LS483431|CRT,CRISPRCasFinder matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagggttagaagttttagcaaatttaaaacaaga	CRISPR spacer
aaaagggttagaagttttagcaaatttaaaacaaga	Protospacer
************************************

9. spacer 2.65|664864|36|LS483431|CRT,CRISPRCasFinder matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagggttagaagttttagcaaatttaaaacaaga	CRISPR spacer
aaaagggttagaagttttagcaaatttaaaacaaga	Protospacer
************************************

10. spacer 2.65|664864|36|LS483431|CRT,CRISPRCasFinder matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaagggttagaagttttagcaaatttaaaacaaga	CRISPR spacer
aaaagggttagaagttttagcaaatttaaaacaaga	Protospacer
************************************

11. spacer 1.8|649436|36|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 2, identity: 0.944

ccatctaactactgcaggcggaacatttcccgatgg	CRISPR spacer
ccatttaactactgcaggcggaacatttcctgatgg	Protospacer
****.*************************.*****

12. spacer 1.8|649436|36|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 2, identity: 0.944

ccatctaactactgcaggcggaacatttcccgatgg	CRISPR spacer
ccatttaactactgcaggcggaacatttcctgatgg	Protospacer
****.*************************.*****

13. spacer 2.42|664273|35|LS483431|PILER-CR matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 2, identity: 0.943

ttttcttttagctctttgtagcgttttgtggtgtg	CRISPR spacer
ttttcttttagctctttgtagcgttttgcagtgtg	Protospacer
****************************..*****

14. spacer 2.42|664273|35|LS483431|PILER-CR matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 2, identity: 0.943

ttttcttttagctctttgtagcgttttgtggtgtg	CRISPR spacer
ttttcttttagctctttgtagcgttttgcagtgtg	Protospacer
****************************..*****

15. spacer 2.49|664735|35|LS483431|PILER-CR matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 2, identity: 0.943

ttttcttttagctctttgtagcgttttgtggtgtg	CRISPR spacer
ttttcttttagctctttgtagcgttttgcagtgtg	Protospacer
****************************..*****

16. spacer 2.49|664735|35|LS483431|PILER-CR matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 2, identity: 0.943

ttttcttttagctctttgtagcgttttgtggtgtg	CRISPR spacer
ttttcttttagctctttgtagcgttttgcagtgtg	Protospacer
****************************..*****

17. spacer 2.56|664272|35|LS483431|CRT,CRISPRCasFinder matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 2, identity: 0.943

ttttcttttagctctttgtagcgttttgtggtgtg	CRISPR spacer
ttttcttttagctctttgtagcgttttgcagtgtg	Protospacer
****************************..*****

18. spacer 2.56|664272|35|LS483431|CRT,CRISPRCasFinder matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 2, identity: 0.943

ttttcttttagctctttgtagcgttttgtggtgtg	CRISPR spacer
ttttcttttagctctttgtagcgttttgcagtgtg	Protospacer
****************************..*****

19. spacer 2.63|664733|35|LS483431|CRT,CRISPRCasFinder matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 2, identity: 0.943

ttttcttttagctctttgtagcgttttgtggtgtg	CRISPR spacer
ttttcttttagctctttgtagcgttttgcagtgtg	Protospacer
****************************..*****

20. spacer 2.63|664733|35|LS483431|CRT,CRISPRCasFinder matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 2, identity: 0.943

ttttcttttagctctttgtagcgttttgtggtgtg	CRISPR spacer
ttttcttttagctctttgtagcgttttgcagtgtg	Protospacer
****************************..*****

21. spacer 2.4|661775|34|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041064 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence) position: , mismatch: 7, identity: 0.794

gaagctaaatgaccattaacaataaacatataaa	CRISPR spacer
taagataaatgaccatttacaataaactaattag	Protospacer
 *** ************ *********  ** *.

22. spacer 2.4|661775|34|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018876 (Bacillus megaterium strain JX285 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.794

gaagctaaatgaccattaacaataaacatataaa	CRISPR spacer
taagataaatgaccatttacaataaactaattag	Protospacer
 *** ************ *********  ** *.

23. spacer 2.4|661775|34|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to CP041518 (Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.794

gaagctaaatgaccattaacaataaacatataaa	CRISPR spacer
taagataaatgaccatttacaataaactaattag	Protospacer
 *** ************ *********  ** *.

24. spacer 2.42|664273|35|LS483431|PILER-CR matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

ttttcttttagctctttgtagcgtt-ttgtggtgtg	CRISPR spacer
ttttctcttagctcttggtagcgttattattgttc-	Protospacer
******.********* ******** **.* ** .

25. spacer 2.42|664273|35|LS483431|PILER-CR matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.8

ttttcttttagctctttgtagcgtt-ttgtggtgtg	CRISPR spacer
ttttctcttagctcttggtagcgttattattgttc-	Protospacer
******.********* ******** **.* ** .

26. spacer 2.49|664735|35|LS483431|PILER-CR matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

ttttcttttagctctttgtagcgtt-ttgtggtgtg	CRISPR spacer
ttttctcttagctcttggtagcgttattattgttc-	Protospacer
******.********* ******** **.* ** .

27. spacer 2.49|664735|35|LS483431|PILER-CR matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.8

ttttcttttagctctttgtagcgtt-ttgtggtgtg	CRISPR spacer
ttttctcttagctcttggtagcgttattattgttc-	Protospacer
******.********* ******** **.* ** .

28. spacer 2.56|664272|35|LS483431|CRT,CRISPRCasFinder matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

ttttcttttagctctttgtagcgtt-ttgtggtgtg	CRISPR spacer
ttttctcttagctcttggtagcgttattattgttc-	Protospacer
******.********* ******** **.* ** .

29. spacer 2.56|664272|35|LS483431|CRT,CRISPRCasFinder matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.8

ttttcttttagctctttgtagcgtt-ttgtggtgtg	CRISPR spacer
ttttctcttagctcttggtagcgttattattgttc-	Protospacer
******.********* ******** **.* ** .

30. spacer 2.63|664733|35|LS483431|CRT,CRISPRCasFinder matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

ttttcttttagctctttgtagcgtt-ttgtggtgtg	CRISPR spacer
ttttctcttagctcttggtagcgttattattgttc-	Protospacer
******.********* ******** **.* ** .

31. spacer 2.63|664733|35|LS483431|CRT,CRISPRCasFinder matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.8

ttttcttttagctctttgtagcgtt-ttgtggtgtg	CRISPR spacer
ttttctcttagctcttggtagcgttattattgttc-	Protospacer
******.********* ******** **.* ** .

32. spacer 2.33|663680|36|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010910 (Candidatus Pantoea carbekii strain US plasmid pBMSBPS3, complete sequence) position: , mismatch: 9, identity: 0.75

tataaataactaattttcaaaaacaaaaatatatct	CRISPR spacer
cataaataattaattttaaaaaacaaatactaatta	Protospacer
.********.******* ********* *.  **.

33. spacer 2.50|664800|36|LS483431|PILER-CR matches to MK448665 (Streptococcus phage Javan1, complete genome) position: , mismatch: 9, identity: 0.75

agttgattttttagaagcaaaagagttttcaaaaaa	CRISPR spacer
aacagatttttcagaagtaaaagagttttcagattt	Protospacer
*.. *******.*****.*************.*

34. spacer 2.64|664798|36|LS483431|CRT,CRISPRCasFinder matches to MK448665 (Streptococcus phage Javan1, complete genome) position: , mismatch: 9, identity: 0.75

agttgattttttagaagcaaaagagttttcaaaaaa	CRISPR spacer
aacagatttttcagaagtaaaagagttttcagattt	Protospacer
*.. *******.*****.*************.*

35. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031992 (Acinetobacter haemolyticus strain 2126ch plasmid pAhaem2126chf, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaa------tttaaaggtagaaaacttactaattatg	CRISPR spacer
------atggccttttaaaggtagaaaacttagtatttaga	Protospacer
      *      ******************* ** *** .

36. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027531 (Acinetobacter baumannii strain AR_0088 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaa------tttaaaggtagaaaacttactaattatg	CRISPR spacer
------atggccttttaaaggtagaaaacttagtatttaga	Protospacer
      *      ******************* ** *** .

37. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029396 (Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaatttaaaggtagaaaacttactaattatg	CRISPR spacer
ttggcgttttaaaggtagaaaacttagtatttaga	Protospacer
*    . ******************* ** *** .

38. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050386 (Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaa------tttaaaggtagaaaacttactaattatg	CRISPR spacer
------atggccttttaaaggtagaaaacttagtatttaga	Protospacer
      *      ******************* ** *** .

39. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014652 (Acinetobacter sp. DUT-2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaa------tttaaaggtagaaaacttactaattatg	CRISPR spacer
------atggccttttaaaggtagaaaacttagtatttaga	Protospacer
      *      ******************* ** *** .

40. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020596 (Acinetobacter baumannii strain HWBA8 plasmid pHWBA8_1, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaa------tttaaaggtagaaaacttactaattatg	CRISPR spacer
------atggccttttaaaggtagaaaacttagtatttaga	Protospacer
      *      ******************* ** *** .

41. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040260 (Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaa------tttaaaggtagaaaacttactaattatg	CRISPR spacer
------atggccttttaaaggtagaaaacttagtatttaga	Protospacer
      *      ******************* ** *** .

42. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031980 (Acinetobacter haemolyticus strain AN4 plasmid pAhaemAN4d, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaa------tttaaaggtagaaaacttactaattatg	CRISPR spacer
------atggccttttaaaggtagaaaacttagtatttaga	Protospacer
      *      ******************* ** *** .

43. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022285 (Acinetobacter baumannii strain 7804 plasmid pAba7804b, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaa------tttaaaggtagaaaacttactaattatg	CRISPR spacer
------atggccttttaaaggtagaaaacttagtatttaga	Protospacer
      *      ******************* ** *** .

44. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK323043 (Acinetobacter baumannii strain Acb-45063 plasmid pAb45063_b, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaa------tttaaaggtagaaaacttactaattatg	CRISPR spacer
------atggccttttaaaggtagaaaacttagtatttaga	Protospacer
      *      ******************* ** *** .

45. spacer 1.5|649240|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018872 (Acinetobacter haemolyticus strain TJS01 plasmid pAHTJS1, complete sequence) position: , mismatch: 10, identity: 0.714

tactaaa------tttaaaggtagaaaacttactaattatg	CRISPR spacer
------atggccttttaaaggtagaaaacttagtatttaga	Protospacer
      *      ******************* ** *** .

46. spacer 1.7|649371|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 10, identity: 0.714

cccagtacaaagcattctcttaaatcaaaatcttt	CRISPR spacer
aaaatgccgaagcaatctcctaaatcaaaatcttc	Protospacer
   *   *.***** ****.**************.

47. spacer 2.14|662431|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

caaaataaaaaagaaggaaaagctaaatttaaaag	CRISPR spacer
ctttaaaacaaagaaggaaaagctacatttattcc	Protospacer
*   * ** **************** *****

48. spacer 2.14|662431|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 10, identity: 0.714

caaaataaaaaagaaggaaaagctaaatttaaaag	CRISPR spacer
ctttaaaacaaagaaggaaaagctacatttattcc	Protospacer
*   * ** **************** *****

49. spacer 2.14|662431|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

caaaataaaaaagaaggaaaagctaaatttaaaag	CRISPR spacer
ctttaaaacaaagaaggaaaagctacatttattcc	Protospacer
*   * ** **************** *****

50. spacer 2.14|662431|35|LS483431|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

caaaataaaaaagaaggaaaagctaaatttaaaag	CRISPR spacer
ctttaaaacaaagaaggaaaagctacatttattcc	Protospacer
*   * ** **************** *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

665797 : 671616

Campylobacter_phage(16.67%)

head,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH29992.1\|665797_666289_-	DNA adenine methylase	A7YG84	Campylobacter_phage	1.9e-50	58.9
SQH29993.1\|666408_667248_+\|head	phage head morphogenesis protein, SPP1 gp7 family	S6B1L4	Thermus_phage	7.0e-05	28.2
SQH29994.1\|667223_667541_+	Uncharacterised protein	NA	NA	NA	NA
SQH29995.1\|667581_667788_+	Uncharacterised protein	NA	NA	NA	NA
SQH29996.1\|667948_668365_-	phage protein, HK97 gp10 family	A0A2R4AN76	Mycobacterium_phage	1.5e-08	41.9
SQH29997.1\|668361_669936_-	Mu-like prophage FluMu protein gp28	A0A1B0T6F0	Thiobacimonas_phage	2.4e-38	32.4
SQH29998.1\|670039_671101_-\|portal	phage portal protein	E5E3S7	Burkholderia_phage	1.0e-13	24.2
SQH29999.1\|671232_671616_+	Uncharacterised protein	A5GYL8	Lactococcus_phage	1.2e-12	36.0

DBSCAN-SWA_2

1358652 : 1368321

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH30678.1\|1358652_1359981_-	UDP-glucose 6-dehydrogenase	A0A127AXI2	Bacillus_phage	3.0e-79	39.0
SQH30679.1\|1359977_1360970_-	UDP-glucose 4-epimerase	A0A2K9L5H6	Tupanvirus	1.2e-56	41.0
SQH30680.1\|1361032_1361347_-	restriction and modification enzyme CjeI	NA	NA	NA	NA
SQH30681.1\|1361589_1364889_-	restriction and modification enzyme CjeI	A0A1V0SLK8	Klosneuvirus	2.7e-15	21.9
SQH30682.1\|1364967_1365210_-	Uncharacterised protein	NA	NA	NA	NA
SQH30683.1\|1365220_1366039_-	DNA ligase	F2Y2Y2	Organic_Lake_phycodnavirus	5.0e-32	34.1
SQH30684.1\|1366035_1367094_-	WbnF	A0A2K9L4U8	Tupanvirus	2.5e-31	28.5
SQH30685.1\|1367103_1368321_-	VI polysaccharide biosynthesis protein VipA/tviB	M1HWZ1	Paramecium_bursaria_Chlorella_virus	1.3e-28	28.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483431

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection