CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483433	Pseudomonas mucidolens strain NCTC8068 genome assembly, chromosome: 1	0 crisprs	RT,DEDDh,csa3,DinG,WYL,cas3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

197528 : 250982

Pseudomonas_phage(27.27%)

integrase,transposase

attL 177163:177190|attR 255808:255835

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
177163:177190	attL	NA	NA	NA	NA
SQH31247.1\|197528_198224_+\|transposase	transposase-like protein	NA	NA	NA	NA
SQH31248.1\|198365_198914_-	Uncharacterised protein	NA	NA	NA	NA
SQH31249.1\|199074_199281_-	insertion element, IS3 family	NA	NA	NA	NA
SQH31250.1\|199381_200779_+\|integrase	integrase	W5R8L2	Staphylococcus_phage	2.9e-40	32.6
SQH31251.1\|200681_201326_-\|integrase	integrase catalytic subunit	Q6H9S3	Enterobacteria_phage	6.1e-09	42.3
SQH31252.1\|201349_201751_-\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH31253.1\|202009_203140_+	S-type Pyocin	NA	NA	NA	NA
SQH31254.1\|203152_203392_+	Uncharacterised protein	NA	NA	NA	NA
SQH31255.1\|203896_204163_-	Uncharacterised protein	NA	NA	NA	NA
SQH31256.1\|204692_205274_+	putative lipoprotein	NA	NA	NA	NA
SQH31257.1\|205317_206001_+	curli production assembly/transport component CsgG	NA	NA	NA	NA
SQH31258.1\|206030_206393_+	lipoprotein	NA	NA	NA	NA
SQH31259.1\|206389_207040_+	putative lipoprotein	NA	NA	NA	NA
SQH31260.1\|207564_209229_+	Von Willebrand factor type A domain-containing protein	NA	NA	NA	NA
SQH31261.1\|209254_209815_+	RNA polymerase sigma factor	NA	NA	NA	NA
SQH31262.1\|209811_210420_+	Uncharacterised protein	NA	NA	NA	NA
SQH31263.1\|210682_211573_-	AraC family transcriptional regulator	NA	NA	NA	NA
SQH31264.1\|211761_212511_+	short-chain dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-25	35.9
SQH31265.1\|212573_213773_+	major facilitator family transporter	NA	NA	NA	NA
SQH31266.1\|213777_214689_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQH31267.1\|214846_215596_+	short chain dehydrogenase/reductase oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	1.4e-09	30.5
SQH31268.1\|215601_216495_-	AraC family transcriptional regulator	NA	NA	NA	NA
SQH31269.1\|216624_217368_+	short-chain dehydrogenase	NA	NA	NA	NA
SQH31270.1\|217407_217809_+	glyoxalase	NA	NA	NA	NA
SQH31271.1\|217805_218783_+	integral membrane protein	NA	NA	NA	NA
SQH31272.1\|218851_218992_-	Uncharacterised protein	NA	NA	NA	NA
SQH31273.1\|219647_220655_+	Colicin E3	NA	NA	NA	NA
SQH31274.1\|220651_220903_+	colicin immunity protein/pyocin immunity protein	NA	NA	NA	NA
SQH31275.1\|221954_222569_-	TetR family transcriptional regulator	NA	NA	NA	NA
SQH31276.1\|223008_223650_+	Isochorismatase family	NA	NA	NA	NA
SQH31277.1\|223722_224037_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
SQH31278.1\|224194_224497_+	ArsR family transcriptional regulator	NA	NA	NA	NA
SQH31279.1\|224771_224993_-	Uncharacterised protein	A0A1B0VP78	Pseudomonas_phage	8.7e-16	62.3
SQH31280.1\|226281_233811_+	DnaG_2	A0A0K1LMQ9	Caulobacter_phage	1.6e-20	29.0
SQH31281.1\|233876_234734_-	Uncharacterised protein	NA	NA	NA	NA
SQH31282.1\|234823_237712_-	inner membrane protein	A0A1B0VP75	Pseudomonas_phage	1.1e-57	32.9
SQH31283.1\|237708_237981_-	Protein of uncharacterised function (DUF3077)	NA	NA	NA	NA
SQH31284.1\|237977_238262_-	Uncharacterised protein	NA	NA	NA	NA
SQH31285.1\|238258_238417_-	Uncharacterised protein	A0A1B0VP73	Pseudomonas_phage	3.9e-10	71.2
SQH31286.1\|238790_239096_-	Uncharacterised protein	NA	NA	NA	NA
SQH31287.1\|239092_239374_-	prophage CP4-57 regulatory	NA	NA	NA	NA
SQH31288.1\|239472_240330_-	Uncharacterised protein	NA	NA	NA	NA
SQH31289.1\|240609_241845_-\|integrase	putative phage integrase	A0A2H4JAT5	uncultured_Caudovirales_phage	1.4e-81	41.4
SQH31290.1\|242311_243007_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
SQH31291.1\|243094_243637_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
SQH31292.1\|243746_243974_+	protein RebB	NA	NA	NA	NA
SQH31293.1\|244097_244571_+	Uncharacterised protein	NA	NA	NA	NA
SQH31294.1\|244653_245289_+	Uncharacterised protein	NA	NA	NA	NA
SQH31295.1\|245317_245788_+	Uncharacterised protein	NA	NA	NA	NA
SQH31296.1\|245870_246185_+	RebB protein	NA	NA	NA	NA
SQH31297.1\|246239_246554_+	protein RebB	NA	NA	NA	NA
SQH31298.1\|246846_248289_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
SQH31299.1\|248472_249753_+	4-aminobutyrate aminotransferase	A0A1V0SKB7	Klosneuvirus	1.5e-30	29.4
SQH31300.1\|250064_250982_+\|transposase	putative transposase	Q75QL1	Wolbachia_phage	1.6e-26	34.4
255808:255835	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1473311 : 1484891

Shigella_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH32383.1\|1473311_1474193_-\|transposase	ISPsy26, transposase orfB	U5P429	Shigella_phage	1.3e-99	64.4
SQH32384.1\|1474183_1474462_-\|transposase	ISPsy26, transposase orfA	U5P4I9	Shigella_phage	2.6e-17	58.8
SQH32385.1\|1474480_1475329_-\|transposase	transposase IS4 family protein	Q38213	Escherichia_phage	3.9e-80	55.8
SQH32386.1\|1475724_1476285_+	fimbrial protein	NA	NA	NA	NA
SQH32387.1\|1476774_1477485_+	molecular chaperone	NA	NA	NA	NA
SQH32388.1\|1477608_1480239_+	usher CupC3	NA	NA	NA	NA
SQH32389.1\|1480238_1481240_+	fimbrial-like adhesin	NA	NA	NA	NA
SQH32390.1\|1481252_1481783_+	putative fimbrial protein	NA	NA	NA	NA
SQH32391.1\|1481806_1482820_+	protein RocR	NA	NA	NA	NA
SQH32392.1\|1482816_1483233_+\|transposase	transposase IS4	NA	NA	NA	NA
SQH32393.1\|1483308_1483617_+\|transposase	ISPsy24, transposase orfA	A9YX41	Burkholderia_phage	8.8e-06	52.1
SQH32394.1\|1484612_1484891_-\|transposase	ISPsy26, transposase orfA	NA	NA	NA	NA

DBSCAN-SWA_3

3391827 : 3401618

uncultured_Caudovirales_phage(77.78%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH34052.1\|3391827_3392307_-	phage protein	A0A2D1GNE2	Pseudomonas_phage	5.7e-36	59.9
SQH34053.1\|3392475_3392640_-	IstB ATP binding domain-containing protein	A0A2H4J3E5	uncultured_Caudovirales_phage	2.0e-09	71.4
SQH34054.1\|3392793_3393153_-	Uncharacterised protein	NA	NA	NA	NA
SQH34055.1\|3393381_3393558_-	Uncharacterised protein	NA	NA	NA	NA
SQH34056.1\|3393865_3394144_+	Uncharacterised protein	NA	NA	NA	NA
SQH34057.1\|3394613_3395285_+	membrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.2e-108	94.6
SQH34058.1\|3395373_3395766_+	sulfur relay protein TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.1e-57	85.4
SQH34059.1\|3395767_3396118_+	sulfur relay protein TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	9.9e-38	66.4
SQH34060.1\|3396117_3396411_+	DsrH like protein	A0A2H4JG28	uncultured_Caudovirales_phage	1.3e-27	63.6
SQH34061.1\|3396407_3396743_+	sulfite reductase, gamma subunit, putative	A0A2H4J8B6	uncultured_Caudovirales_phage	1.0e-47	82.0
SQH34062.1\|3396739_3397741_+	glycosyl transferase	A0A2H4JBY5	uncultured_Caudovirales_phage	1.0e-164	84.2
SQH34063.1\|3397828_3398824_+	glutathione S-transferase, C-terminal domain protein	NA	NA	NA	NA
SQH34064.1\|3398942_3400337_-	siroheme synthase	NA	NA	NA	NA
SQH34065.1\|3400337_3401618_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.7e-98	53.9

DBSCAN-SWA_4

3901614 : 3990160

Pseudomonas_virus(58.97%)

capsid,head,lysis,integrase,tRNA,portal,plate,terminase,transposase,tail

attL 3912164:3912178|attR 3998893:3998907

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH34497.1\|3901614_3902310_-\|tRNA	putative tRNA-m1A22 methylase	NA	NA	NA	NA
SQH34498.1\|3902620_3903511_+	effector locus protein	NA	NA	NA	NA
SQH34499.1\|3903542_3904763_-	transporter-like membrane protein	NA	NA	NA	NA
SQH34500.1\|3904898_3905519_+	TetR family transcriptional regulator	NA	NA	NA	NA
SQH34501.1\|3905524_3906373_-	putative glutathione S-transferase	NA	NA	NA	NA
SQH34502.1\|3906608_3906911_+	lipoprotein	NA	NA	NA	NA
SQH34503.1\|3907331_3908846_-	oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein	NA	NA	NA	NA
SQH34504.1\|3908847_3909834_-	oligopeptide/dipeptide ABC transporter ATP-binding protein	NA	NA	NA	NA
SQH34505.1\|3909830_3910799_-	oligopeptide/dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-16	30.5
SQH34506.1\|3910795_3911653_-	oligopeptide/dipeptide ABC transporter permease	NA	NA	NA	NA
SQH34508.1\|3911649_3912597_-	peptide ABC transporter permease	NA	NA	NA	NA
3912164:3912178	attL	NA	NA	NA	NA
SQH34509.1\|3912600_3913488_-	proline-specific peptidase	NA	NA	NA	NA
SQH34510.1\|3913668_3914433_+	putative LuxR family regulatory protein	A0A1I9KF49	Aeromonas_phage	5.9e-11	29.0
SQH34511.1\|3914478_3915474_+	proline imino peptidase	NA	NA	NA	NA
SQH34512.1\|3915530_3917042_-	xanthine/uracil permease family protein	NA	NA	NA	NA
SQH34513.1\|3917213_3918164_+	transcriptional regulator, LysR family	NA	NA	NA	NA
SQH34514.1\|3918307_3919141_+	Nucleoside-binding outer membrane protein	NA	NA	NA	NA
SQH34515.1\|3919137_3920322_-	Bcr/CflA family multidrug resistance transporter	S4TR35	Salmonella_phage	4.9e-20	26.1
SQH34516.1\|3920444_3921368_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQH34517.1\|3921416_3921629_-	acetylornithine aminotransferase	NA	NA	NA	NA
SQH34518.1\|3921579_3922587_-	acetylornithine aminotransferase	NA	NA	NA	NA
SQH34519.1\|3922689_3923595_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQH34520.1\|3923686_3924880_-	short-chain alcohol dehydrogenase family protein	NA	NA	NA	NA
SQH34522.1\|3925205_3926579_+	lysine decarboxylase	NA	NA	NA	NA
SQH34523.1\|3926923_3932044_+	leucine rich repeat domain protein	NA	NA	NA	NA
SQH34524.1\|3932204_3933935_-	malate:quinone-oxidoreductase	NA	NA	NA	NA
SQH34526.1\|3934342_3935530_+	major facilitator family transporter	NA	NA	NA	NA
SQH34527.1\|3935642_3935792_-	Uncharacterised protein	NA	NA	NA	NA
SQH34528.1\|3936165_3936873_+	catalase	NA	NA	NA	NA
SQH34530.1\|3937693_3938401_-	Putative N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
SQH34532.1\|3938728_3939469_+	protein ToxA	NA	NA	NA	NA
SQH34533.1\|3939470_3940637_+	Uncharacterised protein	NA	NA	NA	NA
SQH34535.1\|3940853_3941513_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQH34537.1\|3941659_3941851_+\|transposase	transposase IS5	NA	NA	NA	NA
SQH34538.1\|3942352_3943324_+	ornithine cyclodeaminase	NA	NA	NA	NA
SQH34539.1\|3943344_3944310_+	putative catabolic threonine dehydratase	NA	NA	NA	NA
SQH34540.1\|3944447_3945719_+	glutamate-aspartate-proton symporter	NA	NA	NA	NA
SQH34541.1\|3945869_3946103_+	L-asparaginase II	NA	NA	NA	NA
SQH34543.1\|3946169_3946559_+	endoribonuclease L-PSP	NA	NA	NA	NA
SQH34544.1\|3946605_3947301_+	putative aldolase	NA	NA	NA	NA
SQH34546.1\|3947526_3947958_+	Uncharacterised protein	NA	NA	NA	NA
SQH34547.1\|3947986_3948703_-	helix-turn-helix, Fis-type	NA	NA	NA	NA
SQH34549.1\|3948991_3950128_+	putative metal-activated pyridoxal enzyme	NA	NA	NA	NA
SQH34550.1\|3950908_3951355_+	ester cyclase	NA	NA	NA	NA
SQH34552.1\|3951798_3951978_+	Uncharacterised protein	NA	NA	NA	NA
SQH34553.1\|3952056_3952878_+	Uncharacterised protein	NA	NA	NA	NA
SQH34555.1\|3953840_3954149_-	Uncharacterized protein conserved in bacteria	K4NZP3	Burkholderia_phage	1.4e-06	50.0
SQH34556.1\|3954126_3954435_-	Protein of uncharacterised function (DUF497)	NA	NA	NA	NA
SQH34558.1\|3955094_3955949_+	Uncharacterised protein	NA	NA	NA	NA
SQH34559.1\|3956151_3957201_-\|portal	phage portal protein, PBSX family	A0A2H4J922	uncultured_Caudovirales_phage	3.1e-143	76.1
SQH34561.1\|3957200_3958958_-\|terminase	terminase, ATPase subunit, gpP-related protein	Q9ZXM5	Pseudomonas_virus	1.1e-286	80.7
SQH34562.1\|3959113_3959944_+\|capsid	phage capsid scaffolding protein GpO	A0A2H4J928	uncultured_Caudovirales_phage	5.0e-72	54.3
SQH34563.1\|3959984_3961007_+\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	8.2e-117	59.5
SQH34564.1\|3961011_3961713_+\|terminase	phage small terminase subunit	Q9ZXM2	Pseudomonas_virus	3.7e-84	69.6
SQH34566.1\|3961817_3962279_+\|head	phage head completion protein (GPL)	Q9ZXM1	Pseudomonas_virus	8.2e-48	61.4
SQH34568.1\|3962278_3962491_+\|tail	phage P2 tail gpX-like protein	Q9ZXL9	Pseudomonas_virus	4.2e-23	77.3
SQH34569.1\|3962518_3962872_+	Uncharacterised protein	Q9ZXL8	Pseudomonas_virus	2.5e-28	56.4
SQH34570.1\|3962873_3963152_+	Protein of uncharacterised function (DUF754)	Q9ZXL7	Pseudomonas_virus	6.7e-21	63.5
SQH34571.1\|3963148_3963994_+	peptidoglycan binding domain-containing protein	Q9ZXL6	Pseudomonas_virus	5.1e-96	67.2
SQH34572.1\|3963990_3964194_+	Uncharacterised protein	NA	NA	NA	NA
SQH34573.1\|3964190_3964634_+\|lysis	phage lysis regulatory protein, LysB family	Q9ZXL5	Pseudomonas_virus	1.0e-26	55.3
SQH34574.1\|3964730_3965213_+\|tail	P2 phage tail completion protein R (GpR)	Q9ZXL3	Pseudomonas_virus	2.4e-42	64.7
SQH34575.1\|3965202_3965661_+	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	9.0e-47	62.7
SQH34576.1\|3965680_3966301_+\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	6.0e-54	66.1
SQH34577.1\|3966297_3966642_+\|plate	phage baseplate assembly protein	Q9ZXK9	Pseudomonas_virus	1.1e-38	69.0
SQH34578.1\|3966638_3967550_+\|plate	baseplate assembly protein J (GpJ)	Q9ZXK8	Pseudomonas_virus	1.2e-122	75.4
SQH34579.1\|3967549_3968164_+\|tail	tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	6.3e-80	70.5
SQH34580.1\|3968160_3969972_+\|tail	putative tail fiber protein	A0A077K818	Ralstonia_phage	8.4e-80	52.1
SQH34582.1\|3970492_3971662_+\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	1.8e-168	74.6
SQH34583.1\|3971719_3972235_+\|tail	major tail tube protein FII	Q9ZXK3	Pseudomonas_virus	1.0e-75	77.8
SQH34584.1\|3972280_3972619_+\|tail	phage tail protein E	Q9ZXK2	Pseudomonas_virus	3.0e-23	62.9
SQH34586.1\|3972627_3972747_+\|tail	phage tail protein, P2 GpE family	Q9ZXK1	Pseudomonas_virus	3.8e-10	76.9
SQH34587.1\|3972736_3976528_+\|tail	phage tail tape measure protein, TP901 family	E5G6Q1	Salmonella_phage	6.4e-05	38.5
SQH34588.1\|3976533_3976974_+\|tail	phage-like tail protein	Q9ZXJ9	Pseudomonas_virus	4.4e-59	76.7
SQH34589.1\|3976970_3978242_+	late control gene D protein	Q9ZXJ8	Pseudomonas_virus	3.6e-194	80.1
SQH34591.1\|3978309_3979173_-	Uncharacterised protein	NA	NA	NA	NA
SQH34592.1\|3979251_3979413_-	Uncharacterised protein	NA	NA	NA	NA
SQH34594.1\|3979542_3979887_-	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
SQH34596.1\|3979898_3980219_-	helix-turn-helix domain-containing protein	A0A2H4JFL3	uncultured_Caudovirales_phage	3.2e-19	49.5
SQH34597.1\|3980546_3981020_+	Uncharacterised protein	A0A2H4JG61	uncultured_Caudovirales_phage	2.2e-56	67.5
SQH34598.1\|3981016_3981307_+	transcriptional activator Ogr/delta	Q9ZXJ1	Pseudomonas_virus	1.4e-13	44.7
SQH34599.1\|3981303_3981675_+	Uncharacterised protein	A0A2H4J947	uncultured_Caudovirales_phage	4.0e-13	43.1
SQH34602.1\|3981750_3981984_+	Uncharacterised protein	NA	NA	NA	NA
SQH34604.1\|3981990_3984720_+	Toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	1.7e-273	52.1
SQH34605.1\|3984745_3985564_+	Toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	2.6e-20	29.7
SQH34607.1\|3985589_3985937_+	Uncharacterised protein	Q9ZXI7	Pseudomonas_virus	2.6e-30	59.0
SQH34609.1\|3985933_3986140_+	Uncharacterised protein	NA	NA	NA	NA
SQH34611.1\|3986197_3986641_+	Uncharacterised protein	NA	NA	NA	NA
SQH34612.1\|3986637_3986856_+	Uncharacterised protein	NA	NA	NA	NA
SQH34614.1\|3986852_3987104_+	Uncharacterised protein	NA	NA	NA	NA
SQH34615.1\|3987116_3987356_+	Uncharacterised protein	A0A2H4J3C4	uncultured_Caudovirales_phage	9.8e-05	40.4
SQH34616.1\|3987345_3987642_+	Uncharacterised protein	NA	NA	NA	NA
SQH34618.1\|3987644_3987920_+	Pyocin activator protein PrtN	A0A2K8HN48	Pseudomonas_phage	1.1e-23	61.6
SQH34620.1\|3987894_3989046_-\|integrase	site-specific recombinase, phage integrase family	L7TP61	Pseudomonas_virus	3.4e-135	62.2
SQH34621.1\|3989221_3990160_+\|tRNA	tRNA-dihydrouridine synthase A	NA	NA	NA	NA
3998893:3998907	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4554875 : 4645736

uncultured_Caudovirales_phage(24.0%)

plate,tRNA,holin,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH35513.1\|4554875_4556591_+\|tRNA	prolyl-tRNA synthetase	NA	NA	NA	NA
SQH35515.1\|4556611_4557565_+	lipoprotein	NA	NA	NA	NA
SQH35516.1\|4557577_4558711_-	DNA polymerase IV	NA	NA	NA	NA
SQH35517.1\|4559570_4562213_+	phosphatidylglycerol lysyltransferase MprF	NA	NA	NA	NA
SQH35519.1\|4562212_4563478_+	putative acid tolerance protein	NA	NA	NA	NA
SQH35521.1\|4563531_4565433_-	potassium uptake protein	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	3.6e-73	33.8
SQH35523.1\|4565735_4567076_+\|tRNA	tRNA modifying protein	NA	NA	NA	NA
SQH35525.1\|4567168_4567642_+	N-acetyltransferase YjaB	NA	NA	NA	NA
SQH35527.1\|4567714_4568425_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
SQH35529.1\|4568490_4568952_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	2.6e-38	52.0
SQH35531.1\|4568955_4569654_+	methyltransferase, YaeB/AF_0241 family	NA	NA	NA	NA
SQH35532.1\|4569767_4570547_-	oxidoreductase FAD/NAD(P)-binding subunit	NA	NA	NA	NA
SQH35534.1\|4570671_4571598_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQH35536.1\|4571594_4571957_-	diacylglycerol kinase	NA	NA	NA	NA
SQH35538.1\|4572032_4572683_-	LuxR family DNA-binding response regulator	NA	NA	NA	NA
SQH35539.1\|4572942_4573653_-	DTW domain protein	NA	NA	NA	NA
SQH35541.1\|4573864_4574296_+	putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA
SQH35543.1\|4574632_4575742_+	putative decarboxylase	NA	NA	NA	NA
SQH35544.1\|4575807_4576275_-	regulatory protein RecX	NA	NA	NA	NA
SQH35546.1\|4576283_4577342_-	recombinase A	A0A0S2MVG1	Bacillus_phage	1.8e-111	62.4
SQH35547.1\|4577425_4577926_-	competence/damage-inducible protein CinA	B5TK85	Pseudomonas_phage	3.7e-70	83.1
SQH35550.1\|4578007_4578544_-	phage protein	B5TK84	Pseudomonas_phage	1.7e-33	48.9
SQH35551.1\|4578525_4579086_-	phage-related bacteriophage lysozyme	B5TK83	Pseudomonas_phage	2.0e-80	78.4
SQH35553.1\|4579103_4580114_-\|tail	putative phage-like tail protein	A0A2H4JH05	uncultured_Caudovirales_phage	8.2e-101	55.6
SQH35555.1\|4580123_4580336_-\|tail	putative phage-like tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	1.1e-20	65.7
SQH35557.1\|4580328_4580712_-	putative phage-like protein	B0ZSH2	Halomonas_phage	9.5e-34	56.7
SQH35559.1\|4580711_4582454_-\|tail	Phage tail tape measure protein TP901, core region	NA	NA	NA	NA
SQH35561.1\|4582582_4583164_-	phage protein	B0ZSH0	Halomonas_phage	1.0e-26	36.1
SQH35563.1\|4583257_4583764_-\|tail	phage tail tube protein	Q6R4W3	Vibrio_virus	2.5e-21	33.9
SQH35565.1\|4583763_4584930_-\|tail	phage tail sheath protein	B0ZSG8	Halomonas_phage	4.7e-124	56.4
SQH35567.1\|4584932_4585136_-	putative phage-like protein	NA	NA	NA	NA
SQH35569.1\|4585223_4585526_-	Uncharacterised protein	Q8H9M8	Vibrio_phage	2.3e-11	50.0
SQH35571.1\|4585526_4586312_-	Uncharacterised protein	NA	NA	NA	NA
SQH35573.1\|4586359_4586890_-\|tail	tail fiber protein	B0ZSG1	Halomonas_phage	5.5e-48	56.3
SQH35575.1\|4586886_4587525_-\|tail	phage tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	1.7e-35	49.4
SQH35577.1\|4587521_4588517_-\|plate	baseplate J family protein	A0A2H4JC04	uncultured_Caudovirales_phage	1.6e-109	62.6
SQH35578.1\|4588513_4588846_-\|plate	phage baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	2.6e-35	68.2
SQH35580.1\|4588855_4589467_-\|plate	phage baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	2.8e-43	53.6
SQH35582.1\|4589470_4589983_-	putative phage-like protein	NA	NA	NA	NA
SQH35584.1\|4590004_4590349_-\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	9.7e-46	85.0
SQH35585.1\|4590947_4591676_-	HTH-type transcriptional regulator PrtR	B5TK58	Pseudomonas_phage	6.3e-119	87.7
SQH35587.1\|4592043_4592736_+	DNA mismatch repair protein MutS	NA	NA	NA	NA
SQH35589.1\|4592699_4594634_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	6.5e-30	22.2
SQH35591.1\|4594776_4595100_+	4Fe-4S ferredoxin	NA	NA	NA	NA
SQH35593.1\|4595590_4596685_-	ATP-binding protein in capB 3'region	NA	NA	NA	NA
SQH35595.1\|4596853_4598905_+\|tRNA	methionyl-tRNA synthetase	NA	NA	NA	NA
SQH35597.1\|4599016_4599580_+	electron transport complex protein RnfA	NA	NA	NA	NA
SQH35599.1\|4599576_4600584_+	RnfABCDGE type electron transport complex subunit B	NA	NA	NA	NA
SQH35601.1\|4600570_4601554_+	RnfABCDGE type electron transport complex D subunit	NA	NA	NA	NA
SQH35603.1\|4601550_4602162_+	electron transport complex protein RnfG	NA	NA	NA	NA
SQH35605.1\|4602154_4602658_+	electron transport complex protein rnfE	NA	NA	NA	NA
SQH35607.1\|4602683_4603322_+	DNA lyase	NA	NA	NA	NA
SQH35609.1\|4603429_4603618_+\|tRNA	leucyl-tRNA synthetase	NA	NA	NA	NA
SQH35610.1\|4603700_4604333_-	LuxR family DNA-binding response regulator	NA	NA	NA	NA
SQH35612.1\|4604930_4606148_-	argininosuccinate synthase	NA	NA	NA	NA
SQH35613.1\|4606277_4607186_-	OmpA family protein	NA	NA	NA	NA
SQH35615.1\|4607342_4608389_+	dihydroorotase	NA	NA	NA	NA
SQH35617.1\|4608385_4609057_+	ribonuclease T	NA	NA	NA	NA
SQH35618.1\|4609121_4609724_-	peroxiredoxin	NA	NA	NA	NA
SQH35620.1\|4609965_4610184_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA
SQH35622.1\|4610385_4610856_+	bacterioferritin	NA	NA	NA	NA
SQH35624.1\|4611031_4611370_-	monothiol glutaredoxin	NA	NA	NA	NA
SQH35625.1\|4611472_4613581_-	molybdopterin oxidoreductase	NA	NA	NA	NA
SQH35627.1\|4614045_4614969_+	ornithine carbamoyltransferase ArgF	A0A1J0F9B8	Only_Syngen_Nebraska_virus	5.0e-20	28.4
SQH35629.1\|4614965_4616075_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	4.9e-22	38.4
SQH35631.1\|4616126_4616597_-\|tRNA	Cys-tRNA[Pro] and Cys-tRNA[Cys] deacylase YbaK	NA	NA	NA	NA
SQH35632.1\|4617010_4617823_+	glycerol uptake facilitator protein GlpF	NA	NA	NA	NA
SQH35634.1\|4617902_4619408_+	glycerol kinase	NA	NA	NA	NA
SQH35635.1\|4619503_4620259_+	glycerol-3-phosphate regulon repressor	A0A077SK06	Escherichia_phage	1.6e-24	29.9
SQH35637.1\|4620567_4622106_+	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
SQH35639.1\|4622670_4623585_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
SQH35640.1\|4623776_4624523_+	amino acid ABC transporter permease	NA	NA	NA	NA
SQH35642.1\|4624522_4625194_+	glutamate/aspartate ABC transporter permease GltK	NA	NA	NA	NA
SQH35644.1\|4625190_4625925_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-32	38.2
SQH35645.1\|4626084_4627986_+	putative two-component system sensor kinase	NA	NA	NA	NA
SQH35647.1\|4627982_4629323_+	putative two-component system response regulator	NA	NA	NA	NA
SQH35649.1\|4629333_4629672_+	protein GlpM	NA	NA	NA	NA
SQH35651.1\|4629821_4630472_-	DsbA-like thioredoxin domain protein	NA	NA	NA	NA
SQH35652.1\|4630533_4631694_-	alpha/beta fold family hydrolase	NA	NA	NA	NA
SQH35654.1\|4631747_4632665_+	HTH-type transcriptional regulator MetR	NA	NA	NA	NA
SQH35656.1\|4632669_4633188_-	GNAT family acetyltransferase	NA	NA	NA	NA
SQH35658.1\|4633184_4633820_-	transporter, LysE family	NA	NA	NA	NA
SQH35661.1\|4633844_4634255_-	NUDIX family hydrolase	NA	NA	NA	NA
SQH35662.1\|4634327_4635674_-	putative two-component system response regulator	NA	NA	NA	NA
SQH35665.1\|4635819_4637334_+	putative two-component system sensor kinase	NA	NA	NA	NA
SQH35668.1\|4637410_4637686_-	50S ribosomal protein L31	NA	NA	NA	NA
SQH35670.1\|4637915_4639535_+	glutamate synthase	NA	NA	NA	NA
SQH35671.1\|4639580_4639865_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
SQH35673.1\|4639950_4641372_-	amino acid transporter	NA	NA	NA	NA
SQH35675.1\|4641775_4644862_+	membrane carboxypeptidase	NA	NA	NA	NA
SQH35677.1\|4645277_4645736_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

5025586 : 5084334

Staphylococcus_phage(10.0%)

integrase,transposase,protease

attL 5020176:5020191|attR 5082866:5082881

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5020176:5020191	attL	NA	NA	NA	NA
SQH36331.1\|5025586_5026060_+\|protease	putative metalloprotease	NA	NA	NA	NA
SQH36333.1\|5026087_5026927_+	transporter	NA	NA	NA	NA
SQH36335.1\|5026941_5028465_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
SQH36338.1\|5028589_5029351_-	membrane protein	NA	NA	NA	NA
SQH36340.1\|5029456_5029774_-	Uncharacterised protein	NA	NA	NA	NA
SQH36342.1\|5030035_5032642_+	LeuS protein	A0A2H4PQS0	Staphylococcus_phage	1.3e-190	42.7
SQH36344.1\|5032732_5033338_+	putative lipoprotein	NA	NA	NA	NA
SQH36346.1\|5033341_5034415_+	DNA polymerase III subunit delta	NA	NA	NA	NA
SQH36347.1\|5034625_5034790_+	lipoyl synthase	NA	NA	NA	NA
SQH36349.1\|5034851_5036177_+	lytic murein transglycosylase family protein	NA	NA	NA	NA
SQH36350.1\|5036296_5037217_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA
SQH36352.1\|5037367_5038393_-	lipoyl synthase	NA	NA	NA	NA
SQH36353.1\|5038394_5039042_-	lipoyltransferase	NA	NA	NA	NA
SQH36354.1\|5039041_5039317_-	protein YbeD	NA	NA	NA	NA
SQH36356.1\|5039400_5040558_-	Serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.1e-68	41.0
SQH36359.1\|5040740_5041733_-	RlpA-like lipoprotein RlpA	Q5GQH9	Synechococcus_phage	2.0e-14	51.2
SQH36361.1\|5041732_5042749_-	lytic murein transglycosylase B	NA	NA	NA	NA
SQH36362.1\|5042760_5043906_-	rod shape-determining protein RodA	NA	NA	NA	NA
SQH36364.1\|5043895_5045791_-	penicillin-binding protein 2	NA	NA	NA	NA
SQH36366.1\|5045806_5046274_-	ribosomal RNA large subunit methyltransferase H	NA	NA	NA	NA
SQH36368.1\|5046283_5046778_-	iojap-like ribosome-associated protein	NA	NA	NA	NA
SQH36370.1\|5046847_5047492_-	nicotinic acid mononucleotide adenylyltransferase	NA	NA	NA	NA
SQH36372.1\|5047491_5048757_-	gamma-glutamyl phosphate reductase ProA	A0A1X9I5D4	Streptococcus_phage	4.2e-86	47.5
SQH36374.1\|5048934_5049618_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
SQH36375.1\|5049646_5051083_+	PAP2 family protein	NA	NA	NA	NA
SQH36377.1\|5051140_5051728_-\|protease	ATP-dependent protease La domain protein	NA	NA	NA	NA
SQH36379.1\|5051749_5052466_-	LrgB family membrane protein	NA	NA	NA	NA
SQH36381.1\|5052462_5052825_-	LrgA family protein	NA	NA	NA	NA
SQH36383.1\|5053109_5053565_+	MaoC like domain-containing protein	NA	NA	NA	NA
SQH36385.1\|5053757_5055476_+	peptidase, C13 family	NA	NA	NA	NA
SQH36386.1\|5055506_5056148_+	NAD dependent epimerase/dehydratase family protein	NA	NA	NA	NA
SQH36388.1\|5056225_5056510_-	lipoprotein	NA	NA	NA	NA
SQH36390.1\|5056502_5057132_-	aromatic acid decarboxylase	NA	NA	NA	NA
SQH36392.1\|5057128_5058478_-	UDP-Nacetylmuramate:l-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
SQH36394.1\|5058549_5060460_-	putative regulatory protein	NA	NA	NA	NA
SQH36396.1\|5060750_5062271_+	aldehyde dehydrogenase	NA	NA	NA	NA
SQH36399.1\|5062603_5063521_+\|transposase	putative transposase	Q75QL1	Wolbachia_phage	1.6e-26	34.4
SQH36401.1\|5063634_5065068_+	transporter	NA	NA	NA	NA
SQH36403.1\|5065120_5066515_+	ethanolamine ammonia lyase large subunit	NA	NA	NA	NA
SQH36405.1\|5066526_5067357_+	ethanolamine ammonia-lyase small subunit	NA	NA	NA	NA
SQH36407.1\|5067462_5067921_+	acetyltransferase	NA	NA	NA	NA
SQH36409.1\|5068260_5068920_+	membrane-like protein DedA	NA	NA	NA	NA
SQH36411.1\|5068926_5069739_+	protein MtfA	NA	NA	NA	NA
SQH36413.1\|5069849_5070377_+	inorganic pyrophosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	3.0e-70	72.3
SQH36415.1\|5070602_5071379_+	putative regulatory protein	A0A1B0Z078	Pseudomonas_phage	1.9e-33	37.7
SQH36417.1\|5071749_5072964_+\|integrase	Phage integrase	A0A077KET4	Ralstonia_phage	5.1e-81	42.7
SQH36419.1\|5073076_5073796_+	Uncharacterised protein	NA	NA	NA	NA
SQH36420.1\|5073877_5074636_-	Protein of uncharacterised function (DUF3296)	NA	NA	NA	NA
SQH36422.1\|5076155_5076461_-	Uncharacterised protein	NA	NA	NA	NA
SQH36424.1\|5076568_5077537_+	phage/plasmid-like protein	A0A0H4INH5	Stenotrophomonas_phage	5.1e-60	41.0
SQH36426.1\|5077687_5077876_+	Uncharacterised protein	NA	NA	NA	NA
SQH36427.1\|5077930_5078245_+	Uncharacterised protein	NA	NA	NA	NA
SQH36429.1\|5078245_5078590_-	XRE family transcriptional regulator	NA	NA	NA	NA
SQH36431.1\|5078725_5079178_+	Uncharacterised protein	NA	NA	NA	NA
SQH36432.1\|5079211_5079589_+	Uncharacterised protein	NA	NA	NA	NA
SQH36434.1\|5080061_5080502_-	Predicted membrane protein	NA	NA	NA	NA
SQH36436.1\|5080867_5081521_-	putative oxidoreductase	NA	NA	NA	NA
SQH36438.1\|5081911_5082370_+	HxlR family transcriptional regulator	NA	NA	NA	NA
SQH36439.1\|5082387_5083917_-\|transposase	putative transposase	A0A218MNE7	uncultured_virus	6.1e-116	46.2
5082866:5082881	attR	NA	NA	NA	NA
SQH36441.1\|5083998_5084334_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage