CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483438	Haemophilus influenzae strain NCTC12975 genome assembly, chromosome: 1	2 crisprs	DinG,DEDDh,cas3,WYL	1	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483438_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483438_1

1101439-1101587

Orphan

Consensus_repeat	Method
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LS483438_1

>merge|LS483438|1|1101439-1101587|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAATTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

>LS483438|1|1|1101439-1101587|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAA
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483438.1\|SQH53869.1\|1096195_1096540_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
LS483438.1\|SQH53879.1\|1106660_1107026_+\|putative-outer-membrane-protein	unknown	unknown	gnl\|CDD\|129260
LS483438.1\|SQH53872.1\|1100241_1101309_+\|UDP-GlcNAc:undecaprenylphosphate-GlcNAc-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|131433
LS483438.1\|SQH53867.1\|1093485_1095834_-\|penicillin-binding-protein-1b	unknown	unknown	gnl\|CDD\|273952
LS483438.1\|SQH53878.1\|1106333_1106546_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|224399
LS483438.1\|SQH53876.1\|1103863_1105591_+\|PEP-protein-phosphotransferase-of-PTS-system-(enzyme-I)	unknown	unknown	gnl\|CDD\|183017
LS483438.1\|SQH53870.1\|1096676_1097483_+\|methionine-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
LS483438.1\|SQH53875.1\|1103526_1103784_+\|phosphohistidinoprotein-hexose-phosphotransferase-component-of-PTS-system-(Hpr)	unknown	unknown	gnl\|CDD\|182777
LS483438.1\|SQH53873.1\|1101708_1102257_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
LS483438.1\|SQH53877.1\|1105650_1106151_+\|glucose-specific-enzyme-IIA-component-of-PTS	unknown	unknown	gnl\|CDD\|181859
LS483438.1\|SQH53880.1\|1107090_1107756_+\|DNA-binding-response-regulator-in-two-component-regulatory-system-with-QseC	unknown	unknown	gnl\|CDD\|182387
LS483438.1\|SQH53882.1\|1109474_1111412_+\|choline-transporter-of-high-affinity	unknown	unknown	gnl\|CDD\|224211
LS483438.1\|SQH53868.1\|1095840_1096239_-\|Uncharacterised-protein-family-(UPF0231)	unknown	unknown	gnl\|CDD\|225654
LS483438.1\|SQH53881.1\|1107752_1109108_+\|sensory-histidine-kinase-in-two-component-regulatory-system-with-QseB	unknown	unknown	gnl\|CDD\|182388
LS483438.1\|SQH53865.1\|1090957_1092292_-\|argininosuccinate-synthetase	unknown	unknown	gnl\|CDD\|235434
LS483438.1\|SQH53864.1\|1089693_1090887_+\|Mn2+-and-Fe2+-transporter-of-the-NRAMP-family	unknown	unknown	gnl\|CDD\|224826
LS483438.1\|SQH53863.1\|1088912_1089650_+\|lactam-utilization-protein	unknown	unknown	gnl\|CDD\|212111
LS483438.1\|SQH53874.1\|1102327_1103368_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|237039
LS483438.1\|SQH53866.1\|1092447_1093320_-\|phosphoribosylaminoimidazole-succinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
LS483438.1\|SQH53871.1\|1097575_1100167_+\|uridylyltransferase	unknown	unknown	gnl\|CDD\|234980

Protein	Function_ID	Function_description	E-value
LS483438.1\|SQH53869.1\|1096195_1096540_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	1.3229e-81
LS483438.1\|SQH53879.1\|1106660_1107026_+\|putative-outer-membrane-protein	gnl\|CDD\|129260	TIGR00156, Uncharacterized_protein_HI_1709, TIGR00156 family protein. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. [Hypothetical proteins, Conserved].	8.01756e-57
LS483438.1\|SQH53872.1\|1100241_1101309_+\|UDP-GlcNAc:undecaprenylphosphate-GlcNAc-1-phosphate-transferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
LS483438.1\|SQH53867.1\|1093485_1095834_-\|penicillin-binding-protein-1b	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
LS483438.1\|SQH53878.1\|1106333_1106546_+\|Uncharacterised-protein	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	9.985e-06
LS483438.1\|SQH53876.1\|1103863_1105591_+\|PEP-protein-phosphotransferase-of-PTS-system-(enzyme-I)	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
LS483438.1\|SQH53870.1\|1096676_1097483_+\|methionine-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	2.57949e-160
LS483438.1\|SQH53875.1\|1103526_1103784_+\|phosphohistidinoprotein-hexose-phosphotransferase-component-of-PTS-system-(Hpr)	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	1.7508e-37
LS483438.1\|SQH53873.1\|1101708_1102257_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	3.63664e-134
LS483438.1\|SQH53877.1\|1105650_1106151_+\|glucose-specific-enzyme-IIA-component-of-PTS	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	1.49426e-100
LS483438.1\|SQH53880.1\|1107090_1107756_+\|DNA-binding-response-regulator-in-two-component-regulatory-system-with-QseC	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	3.28549e-101
LS483438.1\|SQH53882.1\|1109474_1111412_+\|choline-transporter-of-high-affinity	gnl\|CDD\|224211	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane].	0
LS483438.1\|SQH53868.1\|1095840_1096239_-\|Uncharacterised-protein-family-(UPF0231)	gnl\|CDD\|225654	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown].	6.57309e-61
LS483438.1\|SQH53881.1\|1107752_1109108_+\|sensory-histidine-kinase-in-two-component-regulatory-system-with-QseB	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	1.27076e-177
LS483438.1\|SQH53865.1\|1090957_1092292_-\|argininosuccinate-synthetase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
LS483438.1\|SQH53864.1\|1089693_1090887_+\|Mn2+-and-Fe2+-transporter-of-the-NRAMP-family	gnl\|CDD\|224826	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism].	2.41376e-86
LS483438.1\|SQH53863.1\|1088912_1089650_+\|lactam-utilization-protein	gnl\|CDD\|212111	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins. This subfamily of the LamB/YbgL family is represented by the Escherichia coli putative lactam utilization protein YbgL. Although their molecular function of member of this subfamily is unknown, they show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	5.85636e-152
LS483438.1\|SQH53874.1\|1102327_1103368_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
LS483438.1\|SQH53866.1\|1092447_1093320_-\|phosphoribosylaminoimidazole-succinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
LS483438.1\|SQH53871.1\|1097575_1100167_+\|uridylyltransferase	gnl\|CDD\|234980	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0

>LS483438.1|SQH53872.1|1100241_1101309_+|UDP-GlcNAc:undecaprenylphosphate-GlcNAc-1-phosphate-transferase
MLSIFVTFLGAFLTLIVMRPLANWIGLVDKPNYRKRHQGTIPLIGGVSLFVGNLCYYLMEWDQLRLPYLYLFSIFVLLAIGILDDRFDISPFLRAGIQAILAILMIDLGNIYLDHLGQILGPFQLTLGSIGLIITVFATIAIINAFNMIDGIDGLLGGLSCVSFAAIGILMYRDGQMDMAHWSFALIVSILPYLMLNLGIPFGPKYKVFMGDAGSTLIGFTIIWILLLSTQGKGHPMNPVTALWIIAIPLIDMVAIIYRRVRKGKSPFRPDRLHVHHLMVRAGLTSRQAFLLITFVSAVCATIGILGEVYYVNEWAMFVGFFILFFLYVYSITHAWRITRWVRRMKRRAKRLKKA
>LS483438.1|SQH53871.1|1097575_1100167_+|uridylyltransferase
MLFPLSLSSPLTPSAVKIERENLKQFELENFSRYSIFELVENRSDFYDALLIQLWQEMGLSEQLGISLIAVGGYGRREMFPLSDLDFLILVEQTPIPEIEEKITQFIQFLWDCGFEVGHSVRTLQQCESEGKQDITIATNLLEARFLIGNRPHFDALNELVKRADFWSKEGFFNAKVQEQIERYQRYHNTAYNLEPDIKYSPGGLRDLHLLYWVALHHSGAQTLEDILQSGFIYPQEYQQLQESRAFLFKVRFALHLILTRYDNRLLFDRQIKVSELLGFRGEGNQAVEKMMKCFFQALHRISLISNLLIQHYRENVLSSNQATVIEQLDDDFQLINQCLCLRNSLVFQEKPARILDLFFYLTQYEQANIHSDTLRQLQISLEQLPQKLCEIPEAREKFLRLFNQPNSIKRAFMPMHQYGVLTAYLPQWQAIEGLMQFDLFHIYTVDEHTLRVMLKLESFLSQESAQEHPIAHRIFSQLSDRTLLYIAALFHDIAKGRGGDHAELGAKDVANFARLHGLDRREIDTLAWLVQSHLLMSITAQRRDIHDPEVVMNFAEAVQNQVRLDYLTCLTVADICATNGNLWNSWKRSLFASLYEFTEQQFAQGMKELLDYSEKSAENRKLAQQILTQDYSDIMPISIDQLWERCPEDYFVRNTPKQIAWHTSLLVDLVEALLVKISNRFSLGGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRELEQALTLALQSEKLSALSITPNRQLQHFTVQTDVRFLHENKKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILRNVLYRNIG
>LS483438.1|SQH53870.1|1096676_1097483_+|methionine-aminopeptidase
MAIPIRTKKEIVKLREACKLASDVLVMIEPYVKAGVTTGELDRICHEYMVNEQKVIPACLNYHGFPKATCISINEVVCHGIPSDDKVLKNGDIVNIDVTVIKDGYFGDNSKMYIVGGETNIRSKKLVEAAQEALYVGIRTVKPNIRLNEIGKAVQKYTESQTFSVVREYCGHGVGTEFHCEPQVLHYYADDGGVILKPGMVFTIEPMINAGKKEVRVMGDGWTVKTKDRSHSAQYEHQLVVTETGCEVMTIRDEEIAEGRISRIMINV
>LS483438.1|SQH53869.1|1096195_1096540_-|iron-sulfur-cluster-insertion-protein-ErpA
MIDDIAVPLTFTDAAANKVKSLISEEENTNLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI
>LS483438.1|SQH53868.1|1095840_1096239_-|Uncharacterised-protein-family-(UPF0231)
MPPALVAVVHPLVSKMDFQFTHYQGNVSVTCSMEHIAFANWFNTEVRSNSDKILTALSSAKSLIENQEKILIGAEYTLFLNADEVMVRANNLAIESDEILEQDFHYYDEESLAFCGTQDFIHFLQSYVDFIA
>LS483438.1|SQH53867.1|1093485_1095834_-|penicillin-binding-protein-1b
MTSQHSAKKSSKNTPKNNRTFKGFLLKFSFTVLVLTIFYGGYLDWQIRSKMDGQIWHLPAEVYSRLESVKIADNLAFDEVIQILLDNEYRQTTMVAAPGDFKLEDDSIVVLRRAFPFPDKAEPQRVLRLRFADNKLNRIEDLVAVKAIDEFRLAPKLIAMLQSDNEDRLAIPLQNYPRLLIDTLILTEDRRFYEHNGINPVGILRALIANIRAGQTVQGGSTLTQQLVKNLFLSRERTITRKANEALMSLVLDWRYDKNRILETYLNEIYLGQNGDTQIHGFELASQFYFGRSIREISLDQIALLVGMVKGPSLYNPWRNPQNALERRNIVLKLMLEHKMIGDELYQLLSQRPLGVQKKGQISRKYPAFIQTLQADLRRELGEHKMSSLLGARIFSTMDLKQQAQAENAVVNTVSQLQLKTKNPHLESAMIITDYRTGEIRAVVGGLQTQYAGFNRALMAKRQIGSLVKPSIYLTALSNPEQFRLNTLINNQPITINVKGSPPWQPRNYDKKYSGSVMLMDALARSLNIPTVNIGMKVGLSKVIDTQKAMGWDNVEIPKVPAMLLGSYTISPYDVTKLYQTIANQGGRISLTTVDSITDRQGNLIFQHDKSVKQVVPQEAAFQTLFAMQQTVERGTARSLQKDYADLHLAGKTGTTNEARDTWFVGIDGKNISTVWLGRDDNGETKLTGASGALQIYKDYLNRTNIEKLAITPPATVKWVGINQYGGWDCESYRTIPVWLNNGQNFCGEIASPSFTPTEAETTTPPQESLWDVLDNPNPPAQ
>LS483438.1|SQH53866.1|1092447_1093320_-|phosphoribosylaminoimidazole-succinocarboxamide-synthase
MTQQSLTLSLKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGDSVYDVLPKEEADLIKDRAVVCKRLTPIKIESIVRGYLTGSGLKDYKQTGTICGLKLPENLVEASKLPEAIFTPSSKEEVGNHDINISYAECEKLIGSDLAAQVKEKAIALYTEASEYALTKGIIICDTKFEFGLDENGTLTLMDEVLTPDSSRFWSVDTYQAGTNPPSFDKQFVRDWLENSGWNKQAPAPKVPKNIIQKTVDKYQEALDLLTK
>LS483438.1|SQH53865.1|1090957_1092292_-|argininosuccinate-synthetase
MSNTILQNLPKGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYNAIPKKAMAYGAENARLIDCRSQLAHEGIAAIQCGAFHISTGGIPYFNTTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDVQFIEELGGRLEMSQFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEQLSTGMKIVKPIMGVAFWDEKVEIKPETVTVTFEDGVPVALNGKHFDNAVDLILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGIRLGRLLYQGRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEKVEDAPFDPVDRIGQLTMRNLDVSDTRGKLGIYAQTGLLSAIKDSVLPQLGKK
>LS483438.1|SQH53864.1|1089693_1090887_+|Mn2+-and-Fe2+-transporter-of-the-NRAMP-family
MASITHRRNAVLGAAFLMATSAIGPGFLTQTATFTNTLLASFGFVILLSILLDIGAQLNIWRIVIVSGKRAQDISNAVFPKAGYFLAALIVMGGLAFNIGNVGGAGLGLNSIFGIAPEMGAVISGIIAILIFLRKEAGLLMDRFAQLMGFIMVALTFYVMFKTEPPVAEAAYHSFIPEKIDPIAIVTLVGGTVGGYITFAGAHRLLDAGIQGEKAMAEVSRSSVSAILIASTMRVVLFLAVLGVVSKGVSLNPKNPAETPFEYVAGNFGQVLFGVVIWAASVTSVIGAAYTSVSFLTTLCPTIERNRNRWIIAFIVISTVVLVTVGKPAAVLVFVGTLNGLILPIALALILLAAYRSDIVGTYKHPVFLAFSGWFVVIIMAILSGKTIISYISSFFS
>LS483438.1|SQH53863.1|1088912_1089650_+|lactam-utilization-protein
MKKIDLNADIAEGFPFDESLLQLLSSANIACGLHAGGAKEMQSAVKFAKENKVRIGAHPSFPDRENFGRTAMALSSQELIAHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKIARVIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEVFADRHYMPDGSLVPRSQPNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNHIKITA
>LS483438.1|SQH53873.1|1101708_1102257_-|oligoribonuclease
MPFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTHLALDDIRESIKELAYYREHFMKLD
>LS483438.1|SQH53874.1|1102327_1103368_+|ribosome-small-subunit-dependent-GTPase-A
MAKRKLTQNQTRRIQSNNAKTLHRHKKKDIEWSDEMLGESQEGVVVTRYSIHADVENEQGEIYRCNLRRTLSSLVVGDKVVWRKGNEQLQGVSGVIEAIHPRENEISRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIAGITPLIVLNKVDLLAQEQRQEIEDQLKIYQDIGYEILMISAKSGENMEKLTALLAQGTAIFVGQSGVGKSSLINHILPSVNAQVGDVSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLWHLDAEQITKGYREFQYVLGTCKFRDCKHLSDPGCALREAVEQGKISPVRYDNYHRLIESLSETKSQRHFSLV
>LS483438.1|SQH53875.1|1103526_1103784_+|phosphohistidinoprotein-hexose-phosphotransferase-component-of-PTS-system-(Hpr)
MYSKDVEIIAPNGLHTRPAAQFVKEAKAFSSEITVTSGGKSASAKSLFKLQTLVLTQGTILTISADGEDEQQAVDHLVALIPTLE
>LS483438.1|SQH53876.1|1103863_1105591_+|PEP-protein-phosphotransferase-of-PTS-system-(enzyme-I)
MISGILASPGIAFGKALVLKEEKIVLDTQKITDDQIDAEVARFYEGRAAAVEQLNSIRERALISLGEEKAAIFEGHLMILEDEELEEEILDYLRSNKVNAGVAASKILDQQVTMLSEIDDEYLKERAGDIRDIANRLVKNILGMYIVDLGDIQEESILVAYDLTPSETAQLNLEKVLGVVTDIGGRTSHTSIMARSLELPAIVGTNKVTKLVNTGDYLILDAINNQVYINPTASQIDELKALEAKISEEKAELAKLKDLPAITLDGHKVDVVANIGTIRDCDGAERNGAEGIGLYRTEFLFMDREQLPTEEEQFIAYKQVVEAMNGRLTVLRTMDIGGDKELSYLDLPKEMNPFLGWRAIRIALDRREILNAQLRAVLRASAFGKLAVMFPMIISVEEIRELKAVIETLKAELREEGRLFDNNIQVGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNEFISHLYNPMHPSVLGLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRNVNFQDAKVLADTALQKPTAAEIDQLIEEFLLENSLN
>LS483438.1|SQH53877.1|1105650_1106151_+|glucose-specific-enzyme-IIA-component-of-PTS
MGLFDKLFGSKENKSVEVEIYAPISGEIVNIEDVPDVVFSEKIVGDGVAVRPIGNKIVAPVDGVIGKIFETNHAFSMESKEGVELFVHFGIDTVELKGEGFTRIAQEGQSVKRSDTVIEFDLALLESKAKSVLTPIVISNMDEISCIVKKSGEVVAGESVVLALKK
>LS483438.1|SQH53878.1|1106333_1106546_+|Uncharacterised-protein
MQNIQYECGETHHLKAQSASILLVMKGQLNLRSETTALSLKQGKVAFITAGAAYEVEGLIEGYAVVAKLP
>LS483438.1|SQH53879.1|1106660_1107026_+|putative-outer-membrane-protein
MKKFALATIFALATTSAFAGFNGNNSQGGFQQAAPAAISVKQALSAADNSMITLVGNITQQIDDDEFWFTDGTGQIKIEIKKRVWNGLNVDSKDKVKIYGKLDNEVFEKAELDVLRIEKVE
>LS483438.1|SQH53880.1|1107090_1107756_+|DNA-binding-response-regulator-in-two-component-regulatory-system-with-QseC
MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQVEK
>LS483438.1|SQH53881.1|1107752_1109108_+|sensory-histidine-kinase-in-two-component-regulatory-system-with-QseB
MKNRSLTLRLISVLCLTALFVWLGSTLVAWWQVRHDVNKVFDAQQVLFAERLANSDLSTILLESSTTLNKNSQSVLKKSYDDDALAFAIFSKTGKLLFSDGRNGKDFIFNYKTGFYNANIYDDDDKWRIFWRMAANGELVIAVGQELDYREDLIEEMILGQMWIWFASLPILIIVLGWLIHKELRPIKRLSQEVQTRKSGDVSLLNTEGLPVEILPLVKNLNQFFDRTSAMLQRERRFTSDAAHELRSPLAALRIQTEVAQLAGDDVALREQALLHLTQGIDRASQLIEQLLTLSRLDNLQALETLQLLDWEAIVQSLISERYFVAEKRKITLVFEKASEPKQKQGQSILVSLMLRNLLDNAIKYCPEDTIVSVKISSSQIIIEDNGGGVEPEDLKKLGQRFYRPAGQNEKGSGLGLSIVMRIAELHGFKVRLENVVKEGRRIGLKAIISL
>LS483438.1|SQH53882.1|1109474_1111412_+|choline-transporter-of-high-affinity
MIFIAPEQTQALLNQAKSGIFANFSWFYVLTFSVFLGFLLILSVSSLGNIKLGQDEEEPEFSFLSWLAMLFAAGMGVGLMFFGVAEPLTHYLSDITVGSAEHKQQEALLHTLFHWGIHAWAVYGTIALALAYFGFRYKLPLALRSCFYPLLKDRINGKIGDAIDVMALLATLFGIITTLGFGSSQLGAGLEQIGWISQNSFALQVGVIVVVMCLAVFSAISGIGKGVKILSEINLTLAFCLLLFVLISGPTLYLLSAFSDNIGNYFSNLVQLSFKTYAYEQEHTSWFSGWTVLYWAWWCSWAPFVGLFIARISKGRTIREFIFGVLVIPSLFGILWFTVFGNTAVWLNDGIAAGGLGEFISSPEILLFKFLNYLPLPTITGFVSLLVISLFFITSADSGIYVLNNIASRDKSLASPAWQAIMWGTLMSVVAIVLMQSGGLANLQTMTLIVALPFALLMLVMCFSLWKGLIADKKYFSTKVNPTSIFWSGDKWKSHLEQMMNQTQEKDILRFLKNTALPAMRELRQELTGKYNLSVEINTLFEQEEPALELVIHKESMRDFMYGIKSVGREVSEQLINDENLPHIQHSVTYEPYTYFFDGRVGYDVQYMDQDELIADMLKQYERYLSLLDDVGQELMAHEQTELAE

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Crispr_ID: LS483438_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483438_2

1130294-1130381

Orphan

Consensus_repeat	Method
ACCTTCCCCCGCAAGCAAGGGAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483438_2

>merge|LS483438|2|1130294-1130381|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGGCAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGATACCTTCCCCCGCAAGCAGGGGAAGG

>LS483438|2|2|1130294-1130381|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGG	CAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGAT
ACCTTCCCCCGCAAGCAGGGGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483438.1\|SQH53906.1\|1137555_1138221_+\|Uncharacterized-protein-conserved-in-bacteria-(DUF2057)	unknown	unknown	gnl\|CDD\|234990
LS483438.1\|SQH53909.1\|1142757_1144395_-\|HMW2B,-OMP-85-like-protein-required-for-HMW1A-and-HMW2A-secretion	unknown	unknown	gnl\|CDD\|225387
LS483438.1\|SQH53907.1\|1138288_1140424_+\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|130727
LS483438.1\|SQH53897.1\|1127065_1128121_+\|molybdate-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182993
LS483438.1\|SQH53903.1\|1134764_1135346_-\|electron-transport-complex-protein-RnfB	unknown	unknown	gnl\|CDD\|235347
LS483438.1\|SQH53891.1\|1121962_1122736_+\|putative-UDP-glcNAc--lipooligosaccharide-N-acetylglucosaminyl-glycosyltransferase	unknown	unknown	gnl\|CDD\|225843
LS483438.1\|SQH53905.1\|1136294_1137356_-\|inner-membrane-peptidase	unknown	unknown	gnl\|CDD\|236978
LS483438.1\|SQH53892.1\|1122747_1123632_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	unknown	unknown	gnl\|CDD\|366154
LS483438.1\|SQH53901.1\|1131105_1131729_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|179350
LS483438.1\|SQH53898.1\|1128144_1129518_-\|Na+-dependent-transporters-of-the-SNF-family	unknown	unknown	gnl\|CDD\|271367
LS483438.1\|SQH53899.1\|1129576_1130212_-\|DNA-glycosylase-and-apyrimidinic-(AP)-lyase	unknown	unknown	gnl\|CDD\|182661
LS483438.1\|SQH53904.1\|1135433_1136012_-\|inner-membrane-subunit	unknown	unknown	gnl\|CDD\|235352
LS483438.1\|SQH53902.1\|1131728_1134764_-\|electron-transport-complex-protein-RnfC	unknown	unknown	gnl\|CDD\|235334
LS483438.1\|SQH53893.1\|1123633_1124437_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	unknown	unknown	gnl\|CDD\|133038
LS483438.1\|SQH53895.1\|1125451_1126216_+\|molybdate-transporter-subunit	unknown	unknown	gnl\|CDD\|182641
LS483438.1\|SQH53908.1\|1140521_1142474_-\|HMW2C,-glycosyltransferase-involved-in-glycosylation-of-HMW1A-and-HMW2A	unknown	unknown	gnl\|CDD\|375681
LS483438.1\|SQH53900.1\|1130396_1131104_-\|inner-membrane-NADH-quinone-reductase	unknown	unknown	gnl\|CDD\|237091
LS483438.1\|SQH53896.1\|1126389_1127079_+\|molybdate-transporter-subunit	unknown	unknown	gnl\|CDD\|181841
LS483438.1\|SQH53894.1\|1124546_1125314_-\|DNA-binding-transcriptional-dual-regulator	unknown	unknown	gnl\|CDD\|182640
LS483438.1\|SQH53890.1\|1120889_1121951_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	unknown	unknown	gnl\|CDD\|340847

Protein	Function_ID	Function_description	E-value
LS483438.1\|SQH53906.1\|1137555_1138221_+\|Uncharacterized-protein-conserved-in-bacteria-(DUF2057)	gnl\|CDD\|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	2.00852e-117
LS483438.1\|SQH53909.1\|1142757_1144395_-\|HMW2B,-OMP-85-like-protein-required-for-HMW1A-and-HMW2A-secretion	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	1.04551e-33
LS483438.1\|SQH53907.1\|1138288_1140424_+\|inner-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
LS483438.1\|SQH53897.1\|1127065_1128121_+\|molybdate-transporter-ATP-binding-protein	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
LS483438.1\|SQH53903.1\|1134764_1135346_-\|electron-transport-complex-protein-RnfB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	1.12731e-113
LS483438.1\|SQH53891.1\|1121962_1122736_+\|putative-UDP-glcNAc--lipooligosaccharide-N-acetylglucosaminyl-glycosyltransferase	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	6.22864e-55
LS483438.1\|SQH53905.1\|1136294_1137356_-\|inner-membrane-peptidase	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
LS483438.1\|SQH53892.1\|1122747_1123632_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	7.68429e-32
LS483438.1\|SQH53901.1\|1131105_1131729_-\|oxidoreductase	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	1.08851e-127
LS483438.1\|SQH53898.1\|1128144_1129518_-\|Na+-dependent-transporters-of-the-SNF-family	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.13115e-164
LS483438.1\|SQH53899.1\|1129576_1130212_-\|DNA-glycosylase-and-apyrimidinic-(AP)-lyase	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	8.06206e-140
LS483438.1\|SQH53904.1\|1135433_1136012_-\|inner-membrane-subunit	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	5.78855e-111
LS483438.1\|SQH53902.1\|1131728_1134764_-\|electron-transport-complex-protein-RnfC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0
LS483438.1\|SQH53893.1\|1123633_1124437_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	6.66963e-120
LS483438.1\|SQH53895.1\|1125451_1126216_+\|molybdate-transporter-subunit	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	3.40456e-98
LS483438.1\|SQH53908.1\|1140521_1142474_-\|HMW2C,-glycosyltransferase-involved-in-glycosylation-of-HMW1A-and-HMW2A	gnl\|CDD\|375681	pfam18254, HMw1_D2, HMW1 domain 2. This domain is found in Actinobacillus pleuropneumoniae HMW1C (ApHMW1C). HMW1 adhesin is an N-linked glycoprotein that mediates adherence to respiratory epithelium through N-glycosylation of protein acceptor sites and O-glycosylation of sugar acceptor sites. This domain forms an all alpha domain (AAD) when combined with the N-terminal domain. The AAD interacts extensively with the C-terminal GT-B fold in order to create a unique groove with the potential to accommodate the acceptor protein.	2.90067e-48
LS483438.1\|SQH53900.1\|1130396_1131104_-\|inner-membrane-NADH-quinone-reductase	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	4.5237e-131
LS483438.1\|SQH53896.1\|1126389_1127079_+\|molybdate-transporter-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	1.3737e-137
LS483438.1\|SQH53894.1\|1124546_1125314_-\|DNA-binding-transcriptional-dual-regulator	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	2.3464e-84
LS483438.1\|SQH53890.1\|1120889_1121951_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	3.30343e-135

>LS483438.1|SQH53899.1|1129576_1130212_-|DNA-glycosylase-and-apyrimidinic-(AP)-lyase
MNKTKRIEILTRLREQNPHPTTELQYNSPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLGLDGLKSYIKTIGLFNSKAENIIKTCRDLIEKHNGEVPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTNFAAGKDVVKVEEKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVEF
>LS483438.1|SQH53898.1|1128144_1129518_-|Na+-dependent-transporters-of-the-SNF-family
MTTNNKQRQTWSSRLTYVMTVAGATVGFGATWRFPYLVGENGGGAYVLLFCIAMIVIGIPMILVENVIGRRLRVNSIDAFGDKILDKGKGISKYWKILGYMGLLGAFGIMAYYMVLGGWVISYIISLISGTLDISTPITKDIAKNFYDLHIGNSPYEIIFYTLLFVIVNYIILAKGIIGGIERSVKYLMPLLFIFLIGMVIRNVTLPGAMEGITFYLKPDFSKITPQLFIFVLGQVFFALSLGFGVLITLSSYLNKEENLIHTAVITGFTNTIIAVLAGFMIFPSLFTFGIEPNAGPTLVFQSLPIVFSHLWAGKFFAIIFFGLLLIAALTTSITIYEVIITALQEKLRMRRGKAIVLTLSGIFLLGNIPAILGDNLWKNVTIFGKSIFDFYDYASGNILFMLTALGCAIFVGFVLKDEAKKELSSTKYSTFIKIWFNYVKFVVPLIILVIFISNLF
>LS483438.1|SQH53897.1|1127065_1128121_+|molybdate-transporter-ATP-binding-protein
MLQINVKKQLGKLALQANIQVPDQGVTAIFGLSGSGKTSLINLVSGLIQPDEGFIRLNDRTLVDMESQESLPTHLRKIGYVFQDARLFPHYTVKGNLRYGMKHVSQDDFNYIVDLLGITHLLKRYPLTLSGGEKQRVAIGRALLTDPDILLMDEPLSALDVPRKRELMQYLERLSKEINIPILYVTHSLDELLRLADRVVLMENGIVQAYDSVEKIWNSPIFAPWKGENEQSSVLALPVHLHNPPYKMTALSLGEQALWIHQVPANVGERVLVCIYSSDVSIILQKPEQTSIRNILRGKITQIEIQDSRVDLAVLVEGNKIWASISKWAQNELRFAVGQDVYVQIKAVSVM
>LS483438.1|SQH53896.1|1126389_1127079_+|molybdate-transporter-subunit
MEISAINLSLSVAVSSMLWSLPLAIFVAWLLARKNFYGKSLITGVIHLPLVLPPVVIGYLLLVAMGRNGFIGKYLYQWFGLSFGFSWKGAVLSSAVVAFPLVVRAIRLSLENIDIKLEQAAQTLGASAWRVFFTITLPLSLPGVLAGLVLGFARSLGEFGATITFVSNIAGETQTIPLAMYSFIQTPAAEEQTARLCLFAIILSLISLLLSEWLSKRMQKKLGQGNVAN
>LS483438.1|SQH53895.1|1125451_1126216_+|molybdate-transporter-subunit
MKKLTKISTALLIAGLGFSFAASAKVTVFAAASMTDALQQVAKDYAKQNPKNEVVFSFASSSTLAKQVEEGAPADIFVSASNKWMKYLSEKDLTVKETEKVLVGNDLVLIAPAKSAVNSVDIAKGEWINALKDSYLSVGDPAHVPAGQYAAEALTKLNLWDKVQDRLARAKDVRGALALVERAEAPYGIVYSTDAKVSQQVKTVAVFPADSHKPVVYPVSIVKGHDNADSRDFLKYLESDAAKKVLVGYGFSAK
>LS483438.1|SQH53894.1|1124546_1125314_-|DNA-binding-transcriptional-dual-regulator
MKNTEILLTIKLQQALFIDPKRVRLLKEIQQCGSINQAAKNAKVSYKSAWDHLEAMNKISPRPLLERNTGGKNGGGTVLTTYAERLLQLYDLLERTQEHAFHILQDESVPLDSLLTATARFSLQSSARNQFFGRVAQQRIIDSRCVVDVNVQGLPTPLQVSITTKSSARLKLITEKEVMLMFKAPWVKISEQPLVNQPNQFSVNIKSLNEEEAILQFAESNIEFCATVHQPNQWQIGQQVWIHIDQEQIILATLG
>LS483438.1|SQH53893.1|1123633_1124437_+|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase
MKFSVLMSLYIKENPQFLRECFESLVAQTRQADEIVLVFDGAVTPELESVVTEFETKLPLKLVKLPQNRGLGKALNEGLLHCTYDWVFRMDTDDICVPDRFEKQVAFIEQHPESIIFGGQIAEFGKNVNDIVAYRNVPTSAQEIIKFTQKRCPFNHMTVAYQKSAVINCGGYEDLQEDYYLWIKLVAQGLYMANLPDILVYARVGNGMVSRRRGVNQAKAEWRLFKLKYRLGIQGLLSGLFTFALRFGSRLLPTSLLKKLYQTFLRK
>LS483438.1|SQH53892.1|1122747_1123632_+|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase
MLSIIVPSYNRKAEVPALLESLTQQTSSNFEVIIVDDYSKERVVVEQRYSFPVTVIRNETNQGAAESRNIGARASKGDWLLFLDDDDRFMPEKSEKILQVIEQNPDINFIYHPAKCEMVNEGFSYVTQPIEPQEISTERILLANKIGGMPMVAIKKEMFLKIGGLSTALRSLEDYDFLLKLLQEPSFTPYKINEPLTYCTFHTKRSSVSTDTTNTQKAIDYIREHYVKTVEQARNFDINASYILAYPHIMNLSRKAAKYYFDIFKKTKSIKQFIITLVILISPKLAINLKRLGK
>LS483438.1|SQH53891.1|1121962_1122736_+|putative-UDP-glcNAc--lipooligosaccharide-N-acetylglucosaminyl-glycosyltransferase
MLKKYLISLDKDIQRRKLFFSQKNTEDFQIFSAINTMQKDWDELASIFNIEQFKAHYFRNVTKGEIGCTLSHLSVYQKIIEDNDIAEDSYALVCEDDALFHSDFQQNLTALLSEKLEAEIILLGQSKINSFNDTDLEINYPTTFSFLCKKTGNVNYAFPYKSYFAGTVGYLIKKSAARRFIQQISQNKPFWLADDFLLFEQDFNIRNKVVRPLMVIENPVLISNLESVRGSLSNNLLKKLMKYPLKKIFAIKKNLAN
>LS483438.1|SQH53890.1|1120889_1121951_+|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase
MKKIGFFIMNIESAGGTERVSINVANALAKQGYDVSFISIVGNKPFFQVDEKINIYAMNKLPYSLKKDYFSITKKLRELVKELQLDTLIVVDGAIMLFSALALVNLNIKHILWEHYSFNFTGNRLVRTLGKYLAVTTCDKIVTLTEAEKTLWQEKFKTNNIITIANPNTLLPKNKLAKWENKTILSVGHLFSYKGFDYLLKVWQVLAKKYPDWNLKIVGSGEEEENLKNLAKALDIEDSVNFTPRTNDVSFYYESSSIYCLPSQTEGLPLVVIEAMAFGLPIVAFNCSPGVKQLVEHKENGFLCEKNNIEEMVKGLDLLINNPELYQQMSDKSRLMSEDYGIEKIIEEWKGIL
>LS483438.1|SQH53900.1|1130396_1131104_-|inner-membrane-NADH-quinone-reductase
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLSLATMLVLTCTNTVISLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLGMALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNVKK
>LS483438.1|SQH53901.1|1131105_1131729_-|oxidoreductase
MGTVKITSRYGILLGFIALLCTIISAGIYFLTKDKIDAVIAAQQRELLLQVIPQDYFNNNLLESAVIPQDKNFVGIQKIYFAKKDGNISAYAYETTAPDGYSGDIRLLVGLDPKGEVLGVRVIEHHETPGLGDKIERRISNWILGFTNQSINEHNLSEWAVKKDGGKFDQFSGATITPRAVVNQTKRSALIMLNNQALLQQLSTQVK
>LS483438.1|SQH53902.1|1131728_1134764_-|electron-transport-complex-protein-RnfC
MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWIERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISVRVIPTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAVINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAASQVENQEQQTQPTDAKKAVVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAKTQTTLKIIRNKIMFKMVSSPHTHSGKLTARIMLWVILAMMPAFFTQIYYFGFGVLLQSALAIGTAIIAEFIAIKLRGKKPLNYLSDFSVALTALILAMAIPPYAPYWVIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSLIFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHNQLSDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLILKRIIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYHGNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
>LS483438.1|SQH53903.1|1134764_1135346_-|electron-transport-complex-protein-RnfB
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE
>LS483438.1|SQH53904.1|1135433_1136012_-|inner-membrane-subunit
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSAIALITAGLMSLAFMGFTGLVK
>LS483438.1|SQH53905.1|1136294_1137356_-|inner-membrane-peptidase
MLNDILTGYGIFILEILTILLLILAILGLIISYRQHNKSKVGELEIKDLSEEFNEQVRLLRDFNLSEEEQKQRTKAEKKAEKQNAKKRKEKLKKGETLEDEKKACVYVLDFCGDISASETTALREEISAILNVAKSEDEVLLRLESPGGIVHNYGFAASQLSRLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCLDIDKIATGEHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKKFGRQAEESAINIIHRYSTKQSRDFMY
>LS483438.1|SQH53906.1|1137555_1138221_+|Uncharacterized-protein-conserved-in-bacteria-(DUF2057)
MKLRAVVLGLATLCASTATFAGMVSTSSNLEFLAIDGQKASKSLGKAKTFTVDDTQNHQVVVRLNEIVGSGSNQSLFESNPVIVTFQGNAEDLVISAPVIRNLDSGDKFNQMPNITVKTKSGNAISAKVDVLKQEGLFPSGNVLNDLAEYNASGAAASVSKFAATTVASSVAVAPAGNAKANKGKVVVQGENVAEQQLQYWFQQADKETQTRFLNWAKSHK
>LS483438.1|SQH53907.1|1138288_1140424_+|inner-membrane-protein
MNIRLNTKVISTIPVFIAVNIAAVGIWFFDISSQSMPLILGIIAGGLVDLDNRLTGRLKNVFFTLIAFSISSFIVQLHIGKPIQYIVLMTVLTFIFTMIGAVGQRYSTIAFGSLVVALYTTLTYIPEVNVWFINPVMILCGTLLYSVVTLIVYLFFPNRPVQESVAKAFCALGEYLDTKSCFFDPDEVAEIEKKHLNFAMKNANVVTAFNIVRTALFYRIRGQHRHPRTQRMLRYYFAAQDIHERTNSTHFDYQQITEKLKNTDLIFRIQRLLELQAQSCKEITASLRENKPYHFNERVERALLGTLHSFELYRAQHLNDQDELIDIQTLLDNLQSINWQLRQLAQDTTDTEQLAQIHTEQITGLKNISAVIFSHFTFESPLFRHAVRLSIVVFLCCAIVEFFQFNLGYWILLTTVFVCQPNYSATKVRLRQRIIGTILGVVVGSLLPYLNPTLELKQGLVVLTSTLFFFFRSNNYSFSTFFITLQVLLSFDVMGFDTAAALMPRLLDTLLGAAISWFAVSYLWPDWKYLQLDKVSHQALRSDAVYLLHIISQLQFGKSDDLKYRIARRNAHQYAAALSTTLSNMNNEPVKYKAYLQKGFDLLKLNYSLLSYISALGAYRDRMKNLQQTAQFLSGFYPVAKKIIYTLEHIEEIPEAIFNQQQESIETHLKELEKQEMTAEERAVFSLPYQQLNLITQLLPQFYEYFRKESC
>LS483438.1|SQH53908.1|1140521_1142474_-|HMW2C,-glycosyltransferase-involved-in-glycosylation-of-HMW1A-and-HMW2A
MTKENLQNTPQNTTASPVESNNNQTSPQMLQQSPKPSLLRLEQHIAKKDYEFACRELMVILEKMDANFGGVHDIEFDAPAQLAYLPEKLLIHFATRLANAITTLFSDPELAISEEGALKMISLQRWLTLIFASSPYVNADHILNKYNINPDSEGGFHLATDNSSIAKFCIFYLPESNINMSLDALWAGNQQLCASLCFALQSSRFIGTASAFHKRAVVLQWFPKKLAEIANLDELPANILHDVYMHCSYDLAKNKHDVKRPLNELVRKHILTQGWQDRYLYTLGKKDGKPVMMVLLEHFNSGHSIYRTHSTSMIAAREKFYLVGLGHEGVDKIGREVFDEFFEISSNNIMERLFFIRKQCETFQPAVFYMPSIGMDITTIFVSNTRLAPIQAVALGHPATTHSEFIDYVIVEDDYVGSEDCFSETLLRLPKDALPYVPSALAPQKVDYVLRENPEVVNIGIAATTMKLNPEFLLTLQEIRDKAKVKIHFHFALGQSTGLTHPYVKWFIESYLGDDATAHPHAPYHDYLAILRDCDMLLNPFPFGNTNGIIDMVTLGLIGVCKTGDEVHEHIDEGLFKRLGLPEWLIADTRETYIECALRLAENHQERLELRRYIIENNGLQKLFTGDPRPLGKILLKKTNEWKRKHLSKK
>LS483438.1|SQH53909.1|1142757_1144395_-|HMW2B,-OMP-85-like-protein-required-for-HMW1A-and-HMW2A-secretion
MKNIKSKLKLSAISVLLGLASLSAHTEEAFLVKGFQLSGALETLSENAQLSVAKSLSKYQGTQTLTSLKTAQLELQAVLDKIEPNKFDVVLPQQTITDGNVMFELVSKSVAESQVFYKASKGYSEENIARSLPSLKQGKMYEDGRQWFDLREFNMAKENPLKVTRVHYELNPKNKTSDLVVAGFSPFGKTRSFVSYDNFGAREFNYQRVSLGFVNANLTGHDDVLNLNALTNVKAPSKSYAVGVGYTYPFYSKHQSLSLYTSMSYADSNDIDGLPSAINRKLSKGQSISANLKWSYYLPTFNLGMEDQFKINLGYNYRHINQTSELNRLGETKKKFAVSGVSAGIDGHIQFTPKTIFNIDLTHHYYASKLPGSFGMERIGETFNRSYHISTASLGLSQEFAQGWHFSSQLSGQFTLQDISSIDLFSVTGTYGVRGFKYGGASGERGLVWRNELSMPKYTRFQISPYAFYDAGQFRYNSENAKTYGEDMHTVSSAGLGIKTSPTQNLSLDAFVARRFANANSDNLNGNKKRTSSPTTFWGRLTFSF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483438_3	3.1\|1198976\|49\|LS483438\|CRISPRCasFinder	1198976-1199024	49	LS483438.1	1198940-1198988	1	0.98

1. spacer 3.1|1198976|49|LS483438|CRISPRCasFinder matches to position: 1198940-1198988, mismatch: 1, identity: 0.98

tgtgcagtagtagcaggagctgctgcctgtggtgcttgtgcagtagtag	CRISPR spacer
tgtgcagtagtatcaggagctgctgcctgtggtgcttgtgcagtagtag	Protospacer
************ ************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

705619 : 712062

Staphylococcus_phage(16.67%)

transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH53532.1\|705619_706345_-	putative methyltransferase	A0A0N9SHZ9	Staphylococcus_phage	1.1e-25	32.0
SQH53533.1\|706397_706916_-	Putative protein-S-isoprenylcysteine methyltransferase	NA	NA	NA	NA
SQH53534.1\|707135_708902_+\|tRNA	aspartyl-tRNA synthetase	A0A1V0SFI4	Hokovirus	3.2e-07	30.3
SQH53535.1\|708963_709836_+	Uncharacterised protein	A0A2D1GNG5	Pseudomonas_phage	3.4e-10	26.5
SQH53536.1\|710396_710780_+	transcriptional regulatory protein	A0A0M3LP76	Mannheimia_phage	5.7e-47	69.5
SQH53537.1\|710902_711610_-\|transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	6.8e-62	61.2
SQH53538.1\|711708_712062_-\|transposase	transposase	A0A1B1P776	Bacillus_phage	3.7e-08	37.2

DBSCAN-SWA_2

1231511 : 1288472

Mannheimia_phage(48.48%)

tRNA,portal,lysis,protease,tail,integrase,capsid,plate,terminase,head,holin

attL 1222110:1222126|attR 1291967:1291983

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1222110:1222126	attL	NA	NA	NA	NA
SQH53978.1\|1231511_1232903_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	7.2e-23	31.2
SQH53979.1\|1233096_1233987_+	acetyl-CoA carboxylase, beta (carboxyltranferase) subunit	NA	NA	NA	NA
SQH53980.1\|1233988_1235293_+	folylpolyglutamate synthase	NA	NA	NA	NA
SQH53981.1\|1235580_1236249_-	SanA	NA	NA	NA	NA
SQH53982.1\|1236418_1237495_+	homoserine O-acetyltransferase	NA	NA	NA	NA
SQH53983.1\|1237549_1240192_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.1e-103	32.3
SQH53984.1\|1240357_1242121_-	YcaO-like family	NA	NA	NA	NA
SQH53985.1\|1242257_1242734_-	Uncharacterised protein	NA	NA	NA	NA
SQH53986.1\|1242969_1243776_+	type 11 methyltransferase	NA	NA	NA	NA
SQH53987.1\|1243827_1244529_+	hydroxyacylglutathione hydrolase	A0A1X9I5D3	Streptococcus_phage	3.3e-08	29.1
SQH53988.1\|1244572_1245433_-	tellurite resistance protein	NA	NA	NA	NA
SQH53989.1\|1245545_1247594_-\|tRNA	methionyl-tRNA synthetase	A0A2K9V939	Bandra_megavirus	2.2e-60	29.3
SQH53990.1\|1247744_1248857_+	antiporter inner membrane protein	NA	NA	NA	NA
SQH53991.1\|1248903_1249566_-	dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive	NA	NA	NA	NA
SQH53992.1\|1249679_1250354_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA
SQH53993.1\|1251062_1252073_-\|portal	portal vertex protein	Q19UT6	Mannheimia_phage	1.8e-116	60.4
SQH53994.1\|1252082_1253864_-	Terminase, ATPase subunit	A0A0M3LRV4	Mannheimia_phage	5.0e-218	65.4
SQH53995.1\|1254028_1254844_+\|capsid	Probable bacteriophage capsid scaffolding protein	A0A0M3LNM2	Mannheimia_phage	6.9e-66	60.5
SQH53996.1\|1254864_1255914_+\|capsid	major capsid protein	Q19UT3	Mannheimia_phage	1.7e-88	51.3
SQH53997.1\|1255925_1256576_+\|terminase	terminase, endonuclease subunit	Q19US0	Mannheimia_phage	4.1e-45	46.0
SQH53998.1\|1256869_1257376_+\|head	putative phage head completion	A0A0M3LNL8	Mannheimia_phage	2.8e-33	51.0
SQH53999.1\|1257375_1257585_+\|tail	Probable bacteriophage tail protein X	NA	NA	NA	NA
SQH54000.1\|1257586_1257808_+\|holin	holin	NA	NA	NA	NA
SQH54001.1\|1257800_1258319_+	phage-like lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.5e-37	46.6
SQH54002.1\|1258303_1258654_+\|lysis	phage lysis regulatory protein, LysB family	NA	NA	NA	NA
SQH54003.1\|1258828_1259044_+	DnaK suppressor protein	A0A0M3LS11	Mannheimia_phage	1.1e-10	47.9
SQH54004.1\|1259040_1259304_+	Uncharacterised protein	NA	NA	NA	NA
SQH54005.1\|1259269_1259740_+\|tail	Probable bacteriophage tail completion protein	E5G6N3	Salmonella_phage	7.3e-28	45.3
SQH54006.1\|1259739_1260201_+\|tail	bacteriophage tail completion protein gpS-like protein	A0A2H4J927	uncultured_Caudovirales_phage	5.7e-25	48.2
SQH54007.1\|1260201_1260549_-	Uncharacterised protein	NA	NA	NA	NA
SQH54008.1\|1260621_1260720_+\|tail	phage-related tail protein	NA	NA	NA	NA
SQH54009.1\|1260845_1261157_-	Uncharacterised protein	NA	NA	NA	NA
SQH54010.1\|1261259_1261433_+\|tail	Probable bacteriophage tail completion protein	Q19UR2	Mannheimia_phage	3.2e-05	53.3
SQH54011.1\|1261410_1261671_-	Uncharacterised protein	NA	NA	NA	NA
SQH54012.1\|1261739_1262507_+\|tail	phage-related tail protein	E5G6Q1	Salmonella_phage	9.9e-06	44.8
SQH54013.1\|1262549_1264547_+\|tail	phage-like tail protein	V5YUN9	Pseudomonas_phage	3.8e-65	33.7
SQH54014.1\|1264623_1264791_+	Uncharacterised protein	NA	NA	NA	NA
SQH54015.1\|1264768_1264981_+	Uncharacterised protein	NA	NA	NA	NA
SQH54016.1\|1265045_1265219_+	Uncharacterised protein	NA	NA	NA	NA
SQH54017.1\|1265316_1265874_+	Uncharacterised protein	NA	NA	NA	NA
SQH54018.1\|1265882_1266311_+	Uncharacterised protein	NA	NA	NA	NA
SQH54019.1\|1266420_1267014_+\|plate	phage P2-like baseplate assembly protein	A0A0M3LPY9	Mannheimia_phage	1.6e-43	66.5
SQH54020.1\|1267015_1267354_+\|plate	baseplate assembly protein W	Q19UQ6	Mannheimia_phage	3.4e-19	56.6
SQH54021.1\|1267350_1268265_+\|plate	phage-like baseplate assembly protein	Q19UQ5	Mannheimia_phage	5.1e-94	59.5
SQH54022.1\|1268251_1268791_+\|tail	Probable bacteriophage tail protein gpI	M1T2R2	Escherichia_phage	1.6e-50	52.5
SQH54023.1\|1268799_1271322_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	1.8e-253	68.7
SQH54024.1\|1271333_1271933_+	Uncharacterised protein	Q94MX9	Haemophilus_virus	7.8e-91	89.5
SQH54025.1\|1271929_1272049_+	Uncharacterised protein	NA	NA	NA	NA
SQH54026.1\|1272191_1273376_+\|tail	phage tail sheath-like protein	A0A1S6KZY7	Salmonella_phage	2.3e-102	48.2
SQH54027.1\|1273379_1273886_+\|tail	phage-related tail protein	Q19UP8	Mannheimia_phage	5.4e-53	59.5
SQH54028.1\|1273951_1274251_+\|tail	Probable bacteriophage tail protein E	E5E3Q1	Burkholderia_phage	1.2e-12	42.9
SQH54029.1\|1274250_1274397_+\|tail	Probable bacteriophage tail protein E+E'	E5E3Q0	Burkholderia_phage	2.2e-07	65.0
SQH54030.1\|1274725_1275163_+\|tail	phage-related tail protein	A0A0M3LQ18	Mannheimia_phage	9.1e-41	57.3
SQH54031.1\|1275162_1276383_+	regulator of late gene expression	R9QBT3	Mannheimia_phage	2.7e-122	57.5
SQH54032.1\|1276400_1276790_-	Uncharacterised protein	NA	NA	NA	NA
SQH54033.1\|1276849_1278610_-	Uncharacterized protein conserved in bacteria (DUF2326)	NA	NA	NA	NA
SQH54034.1\|1278612_1278858_-	Uncharacterised protein	NA	NA	NA	NA
SQH54035.1\|1278854_1279616_-	Predicted restriction endonuclease	NA	NA	NA	NA
SQH54036.1\|1279620_1280304_-	peptidase S24-like protein	Q76H56	Enterobacteria_phage	7.9e-23	33.3
SQH54037.1\|1280441_1280861_-	Uncharacterised protein	NA	NA	NA	NA
SQH54038.1\|1280923_1281166_-	Uncharacterised protein	NA	NA	NA	NA
SQH54039.1\|1281203_1281497_-	Uncharacterised protein	NA	NA	NA	NA
SQH54040.1\|1281577_1281733_+	Uncharacterised protein	NA	NA	NA	NA
SQH54041.1\|1281949_1282306_+	Uncharacterised protein	NA	NA	NA	NA
SQH54042.1\|1282166_1282445_-	Uncharacterised protein	NA	NA	NA	NA
SQH54043.1\|1282458_1282587_-	Uncharacterised protein	NA	NA	NA	NA
SQH54044.1\|1282877_1283141_+	Uncharacterised protein	NA	NA	NA	NA
SQH54045.1\|1283158_1283539_+	Uncharacterised protein	NA	NA	NA	NA
SQH54046.1\|1283542_1283785_+	Uncharacterised protein	NA	NA	NA	NA
SQH54047.1\|1283781_1283895_+	Uncharacterised protein	NA	NA	NA	NA
SQH54048.1\|1283912_1284221_+	Uncharacterised protein	NA	NA	NA	NA
SQH54049.1\|1284230_1286417_+	Probable bacteriophage replication protein A	Q94N00	Haemophilus_virus	5.4e-166	42.7
SQH54050.1\|1286471_1286993_+	Uncharacterised protein	A0A0M3LTD8	Mannheimia_phage	4.3e-29	42.4
SQH54051.1\|1286992_1287160_+	DNA binding domain, excisionase family	NA	NA	NA	NA
SQH54052.1\|1287140_1288472_-\|integrase	phage integrase family protein	A0A1B5FPC6	Escherichia_phage	9.3e-44	33.0
1291967:1291983	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1373453 : 1385486

Acinetobacter_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH54114.1\|1373453_1374473_-	phosphate transporter subunit	A0A222YW41	Synechococcus_phage	1.2e-51	40.5
SQH54115.1\|1374975_1375464_+	ferritin iron storage protein	NA	NA	NA	NA
SQH54116.1\|1375479_1375977_+	ferritin like protein 2	NA	NA	NA	NA
SQH54117.1\|1376118_1376970_+	glycosyltransferase	A7IW34	Paramecium_bursaria_Chlorella_virus	2.8e-17	29.7
SQH54118.1\|1377075_1378632_+	component I of anthranilate synthase	A0A0B5J984	Pandoravirus	3.1e-22	32.8
SQH54119.1\|1378644_1379226_+	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.5e-35	39.4
SQH54120.1\|1379274_1379661_+	anthranilate phosphoribosyltransferase	NA	NA	NA	NA
SQH54121.1\|1379713_1380715_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	8.8e-47	35.3
SQH54122.1\|1380752_1382186_+	fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase	A0A0P0IR83	Acinetobacter_phage	1.2e-33	38.0
SQH54123.1\|1382315_1382588_+	hydrogenase 2 accessory protein	NA	NA	NA	NA
SQH54124.1\|1382621_1385486_-\|tRNA	valyl-tRNA synthetase	A0A1V0SK04	Klosneuvirus	1.0e-148	37.4

DBSCAN-SWA_4

1394862 : 1426620

Haemophilus_phage(18.75%)

integrase,terminase

attL 1416937:1416953|attR 1432730:1432746

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH54137.1\|1394862_1395039_-	Uncharacterized protein conserved in bacteria	Q7Y5U2	Haemophilus_phage	8.5e-22	93.1
SQH54138.1\|1395179_1396361_-	phage Mu protein gp30-like protein	Q7Y5U5	Haemophilus_phage	6.4e-89	76.7
SQH54139.1\|1396389_1397724_-	phage-associated protein, HI1409 family	Q7Y5U6	Haemophilus_phage	2.1e-213	84.2
SQH54140.1\|1397968_1399069_-\|terminase	phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	4.6e-97	53.1
SQH54141.1\|1399055_1399568_-\|terminase	Probable bacteriophage terminase, small subunit	A0A1X9SFE5	Acinetobacter_phage	1.0e-19	39.2
SQH54142.1\|1399645_1399897_+	bacteriophage protein/plasmid stabilization system protein	A0A1S5NR91	Burkholderia_phage	9.9e-16	52.9
SQH54143.1\|1399880_1400228_+	transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.2e-22	56.1
SQH54144.1\|1400422_1400758_-	putative bacteriophage protein	Q7Y5U9	Haemophilus_phage	9.8e-19	52.1
SQH54145.1\|1400730_1401273_-	DLP12 prophage lysozyme	A0A0M3LPQ1	Mannheimia_phage	3.1e-46	52.0
SQH54146.1\|1401253_1401505_-	Uncharacterised protein	NA	NA	NA	NA
SQH54147.1\|1401675_1401837_-	Uncharacterised protein	NA	NA	NA	NA
SQH54148.1\|1401964_1402477_-	Uncharacterised protein	NA	NA	NA	NA
SQH54149.1\|1402885_1403707_-	NYN domain	A0A0R6PGY5	Moraxella_phage	3.1e-34	40.9
SQH54150.1\|1403908_1404394_-	Uncharacterised protein	NA	NA	NA	NA
SQH54151.1\|1404466_1404832_-	RNA polymerase sigma factor	NA	NA	NA	NA
SQH54152.1\|1404833_1405421_-	ning recombination protein	A0A2I7RAC0	Vibrio_phage	8.3e-37	48.0
SQH54153.1\|1405513_1405930_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	1.9e-64	86.1
SQH54154.1\|1405966_1406191_-	Uncharacterised protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
SQH54155.1\|1406187_1406829_-	phage replication protein	D0UIL4	Aggregatibacter_phage	4.2e-34	41.9
SQH54156.1\|1406825_1407602_-	putative phage DNA replication protein O	D0UIL5	Aggregatibacter_phage	1.3e-26	62.6
SQH54157.1\|1407603_1407846_-	Uncharacterised protein	M4NJW2	Sulfitobacter_phage	4.0e-06	41.4
SQH54158.1\|1408002_1408434_+	Uncharacterised protein	NA	NA	NA	NA
SQH54159.1\|1408446_1408674_-	DNA-binding transcriptional regulator	D0UIL8	Aggregatibacter_phage	1.5e-10	50.8
SQH54160.1\|1408808_1409714_+	bacteriophage transcriptional regulator	B6SCU0	Bacteriophage	6.8e-38	40.8
SQH54161.1\|1409729_1410824_+	Protein of uncharacterised function DUF262	A0A0R6PKN1	Moraxella_phage	2.0e-60	36.2
SQH54162.1\|1410823_1411483_+	Uncharacterised protein	NA	NA	NA	NA
SQH54163.1\|1411439_1412471_-	modification methylase haeiii	A0A0R6PG08	Moraxella_phage	2.8e-128	66.4
SQH54164.1\|1413146_1413317_+	Uncharacterised protein	NA	NA	NA	NA
SQH54165.1\|1413481_1414312_+	KilA-N domain	Q4ZC41	Staphylococcus_virus	3.4e-76	52.2
SQH54166.1\|1414816_1415434_+	putative prophage antirepressor	A0A0P0ZCS0	Stx2-converting_phage	4.0e-18	46.4
SQH54167.1\|1415523_1415874_+	Uncharacterised protein	NA	NA	NA	NA
SQH54168.1\|1415870_1416164_+	Uncharacterised protein	NA	NA	NA	NA
SQH54169.1\|1416175_1417087_+	recombinational DNA repair protein, rece pathway	A0A0M3LNU3	Mannheimia_phage	2.4e-115	70.7
1416937:1416953	attL	NA	NA	NA	NA
SQH54170.1\|1417431_1418043_+	putative prophage antirepressor	Q7Y5X0	Haemophilus_phage	5.8e-33	60.6
SQH54171.1\|1418253_1418898_+	Uncharacterised protein	A0A0M3LP90	Mannheimia_phage	6.8e-85	71.4
SQH54172.1\|1418897_1419332_+	ssDNA-binding protein	A0A059WRL7	Vibrio_phage	1.3e-18	36.2
SQH54173.1\|1419394_1420687_+	large adhesin	A0A0U3TGV3	Pseudomonas_phage	8.8e-07	61.9
SQH54174.1\|1420811_1421708_+	recombination associated protein	S4TWL4	Salmonella_phage	8.4e-57	43.7
SQH54175.1\|1421704_1421950_+	Uncharacterised protein	NA	NA	NA	NA
SQH54176.1\|1421946_1422306_+	Uncharacterised protein	NA	NA	NA	NA
SQH54177.1\|1422409_1423093_+	C5 methylase	K4JU61	Streptococcus_phage	5.2e-67	57.1
SQH54178.1\|1423103_1423751_+	Uncharacterised protein	A0A0M3LNU4	Mannheimia_phage	1.0e-08	40.0
SQH54179.1\|1423754_1424171_+	Uncharacterised protein	W0B4E9	Acinetobacter_phage	3.5e-05	39.2
SQH54180.1\|1424250_1424739_+	Uncharacterised protein	NA	NA	NA	NA
SQH54181.1\|1424728_1425052_+	Uncharacterised protein	NA	NA	NA	NA
SQH54182.1\|1425044_1425317_+	Uncharacterised protein	NA	NA	NA	NA
SQH54183.1\|1425358_1425562_+	Uncharacterised protein	NA	NA	NA	NA
SQH54184.1\|1425633_1426620_-\|integrase	integrase	A0A0M3LQN1	Mannheimia_phage	1.3e-95	55.6
1432730:1432746	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1664198 : 1672707

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH54417.1\|1664198_1664882_+	7-cyano-7-deazaguanine synthase	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.3e-54	50.7
SQH54418.1\|1664874_1665300_+	6-pyruvoyl-tetrahydropterin synthase	A0A1U9WRB3	Streptococcus_virus	2.3e-20	42.0
SQH54419.1\|1665306_1665936_+	organic radical activating protein	S4TZT1	uncultured_phage	8.6e-16	30.3
SQH54420.1\|1666542_1668726_+	DNA-dependent ATPase I and helicase II	A7KV33	Bacillus_phage	3.9e-116	37.7
SQH54421.1\|1668815_1669817_+	dipeptide transporter	NA	NA	NA	NA
SQH54422.1\|1669831_1670719_+	dipeptide transporter	NA	NA	NA	NA
SQH54423.1\|1670728_1671721_+	dipeptide transporter	G3M9Y6	Bacillus_virus	2.0e-14	30.8
SQH54424.1\|1671723_1672707_+	dipeptide transporter	G9BWD6	Planktothrix_phage	1.4e-20	33.2

DBSCAN-SWA_6

1799581 : 1808644

Escherichia_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH54545.1\|1799581_1801426_+	abc transporter atp-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	2.4e-21	29.3
SQH54546.1\|1801549_1801828_-	copper chaperone MerP-like protein	NA	NA	NA	NA
SQH54547.1\|1801836_1802199_-	putative mercuric transport protein MerT	NA	NA	NA	NA
SQH54548.1\|1802173_1803283_-	transglutaminase domain-containing protein	NA	NA	NA	NA
SQH54549.1\|1803535_1805953_+	dimethyl sulfoxide reductase, anaerobic subunit A	A0A077SK27	Escherichia_phage	1.8e-223	50.8
SQH54550.1\|1805963_1806332_+	oxidoreductase, Fe-S subunit	A0A077SL61	Escherichia_phage	1.8e-42	58.3
SQH54551.1\|1806328_1806580_+	oxidoreductase, Fe-S subunit	A0A077SL61	Escherichia_phage	1.1e-22	57.8
SQH54552.1\|1806581_1807421_+	anaerobic dimethyl sulfoxide reductase chain C	A0A077SK59	Escherichia_phage	5.5e-18	31.6
SQH54553.1\|1807532_1808144_+	twin-argninine leader-binding protein for DmsA and TorA	A0A077SLS7	Escherichia_phage	3.0e-21	32.5
SQH54554.1\|1808143_1808644_+	ferredoxin	A0A077SLP0	Escherichia_phage	3.2e-13	32.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483438

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection