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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS483441 Aeromonas caviae strain NCTC12244 genome assembly, chromosome: 1 10 crisprs DinG,WYL,DEDDh,cas3,csa3 0 4 5 0

Results visualization

1. LS483441
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483441_1 21147-21293 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483441_2 518354-518553 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483441_4 1516701-1516817 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483441_5 1818911-1819024 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483441_6 3084876-3084976 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483441_7 3170993-3171128 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483441_8 3527282-3527392 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483441_9 4206935-4207041 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483441_10 4224394-4224492 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483441_11 4240120-4240211 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 LN997803 Escherichia coli phage phi467 15121-15162 5 0.881
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 296499-296540 5 0.881
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 KU052038 Escherichia phage SerU-LTIIb, partial genome 1164-1205 5 0.881
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 KU052038 Escherichia phage SerU-LTIIb, partial genome 3070-3111 5 0.881
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 KY653118 Morganella phage IME1369_01, complete genome 693-734 5 0.881
LS483441_9 9.1|4206975|27|LS483441|CRISPRCasFinder 4206975-4207001 27 NC_001425 Streptomyces flavovirens plasmid pSN22 DNA, complete sequence 5970-5996 5 0.815
LS483441_9 9.1|4206975|27|LS483441|CRISPRCasFinder 4206975-4207001 27 MF403009 Agrobacterium phage Atu_ph08, complete genome 10566-10592 5 0.815
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 NC_049942 Escherichia phage JLK-2012, complete sequence 23524-23565 6 0.857
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 NZ_CP022660 Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence 52073-52114 6 0.857
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 NZ_CP045061 Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence 52079-52120 6 0.857
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 NZ_CP045054 Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence 52084-52125 6 0.857
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 NZ_CP045058 Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence 52083-52124 6 0.857
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 NC_021742 Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence 35423-35464 7 0.833
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 NZ_LN868946 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence 103821-103862 7 0.833
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 MH791411 UNVERIFIED: Escherichia phage Ecwhy_1, complete genome 13640-13681 7 0.833
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 MH494197 Escherichia phage CMSTMSU, complete genome 196767-196808 7 0.833
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 NZ_CP023526 Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence 1927-1968 8 0.81
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 716950-716996 8 0.83
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 661369-661415 8 0.83
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 1471000-1471046 8 0.83
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 1743893-1743939 9 0.809
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 1303504-1303550 9 0.809
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 1071528-1071574 9 0.809
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 324059-324105 9 0.809
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP032348 Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence 76749-76795 9 0.809
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 NC_027364 Escherichia phage PBECO 4, complete genome 207827-207868 10 0.762
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 LC494302 Escherichia phage SP27 DNA, complete genome 76611-76652 10 0.762
LS483441_2 2.1|518391|42|LS483441|PILER-CR 518391-518432 42 LT603033 Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I 17117-17158 10 0.762
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP040452 Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence 192222-192268 10 0.787
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP029833 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence 195512-195558 10 0.787
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP032324 Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence 444259-444305 10 0.787
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP007797 Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence 591151-591197 10 0.787
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP032343 Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence 601103-601149 10 0.787
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP012917 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence 127074-127120 10 0.787
LS483441_3 3.1|1407260|34|LS483441|CRISPRCasFinder 1407260-1407293 34 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 1310253-1310286 10 0.706
LS483441_3 3.1|1407260|34|LS483441|CRISPRCasFinder 1407260-1407293 34 NZ_CP015882 Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence 1152468-1152501 10 0.706
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NC_016587 Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence 527113-527159 11 0.766
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NC_016587 Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence 549587-549633 11 0.766
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NC_013858 Azospirillum sp. B510 plasmid pAB510d, complete sequence 442555-442601 11 0.766
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NC_013858 Azospirillum sp. B510 plasmid pAB510d, complete sequence 419987-420033 12 0.745
LS483441_2 2.2|518470|47|LS483441|PILER-CR 518470-518516 47 NZ_CP054617 Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence 224329-224375 12 0.745

1. spacer 2.1|518391|42|LS483441|PILER-CR matches to LN997803 (Escherichia coli phage phi467) position: , mismatch: 5, identity: 0.881

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccatatgcggg	Protospacer
*************************.********* ***  .

2. spacer 2.1|518391|42|LS483441|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 5, identity: 0.881

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccatatgcggg	Protospacer
*************************.********* ***  .

3. spacer 2.1|518391|42|LS483441|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 5, identity: 0.881

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccatatgcggg	Protospacer
*************************.********* ***  .

4. spacer 2.1|518391|42|LS483441|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 5, identity: 0.881

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccatatgcggg	Protospacer
*************************.********* ***  .

5. spacer 2.1|518391|42|LS483441|PILER-CR matches to KY653118 (Morganella phage IME1369_01, complete genome) position: , mismatch: 5, identity: 0.881

taggtcaccagttcgattccggtagccggcaccat-ttgccca	CRISPR spacer
taggtcaccagttcgactccggtagccggcaccatattaaac-	Protospacer
****************.****************** **.  * 

6. spacer 9.1|4206975|27|LS483441|CRISPRCasFinder matches to NC_001425 (Streptomyces flavovirens plasmid pSN22 DNA, complete sequence) position: , mismatch: 5, identity: 0.815

cgcactcttctgttgggcgagccggta	CRISPR spacer
ctcacgctcctgttgggcgagccgggc	Protospacer
* *** **.****************  

7. spacer 9.1|4206975|27|LS483441|CRISPRCasFinder matches to MF403009 (Agrobacterium phage Atu_ph08, complete genome) position: , mismatch: 5, identity: 0.815

cgcactcttctgttgggcgagccggta	CRISPR spacer
gcctctgatctgttgggcgagccggta	Protospacer
  * **  *******************

8. spacer 2.1|518391|42|LS483441|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 6, identity: 0.857

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
caggtcgccagttcgattccggtagccggcaccatatgcggg	Protospacer
.*****.**************************** ***  .

9. spacer 2.1|518391|42|LS483441|PILER-CR matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 6, identity: 0.857

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccacttacgac	Protospacer
*************************.********.**.*   

10. spacer 2.1|518391|42|LS483441|PILER-CR matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 6, identity: 0.857

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccacttacgac	Protospacer
*************************.********.**.*   

11. spacer 2.1|518391|42|LS483441|PILER-CR matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 6, identity: 0.857

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccacttacgac	Protospacer
*************************.********.**.*   

12. spacer 2.1|518391|42|LS483441|PILER-CR matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 6, identity: 0.857

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccacttacgac	Protospacer
*************************.********.**.*   

13. spacer 2.1|518391|42|LS483441|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.833

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagccggcaccaatcaagtc	Protospacer
********************************** *..  . 

14. spacer 2.1|518391|42|LS483441|PILER-CR matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.833

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccatcaagtcc	Protospacer
*************************.*********. . .* 

15. spacer 2.1|518391|42|LS483441|PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 7, identity: 0.833

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcacaaatcagccg	Protospacer
*************************.****** * *.. **.

16. spacer 2.1|518391|42|LS483441|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 7, identity: 0.833

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcacaaatcagccg	Protospacer
*************************.****** * *.. **.

17. spacer 2.1|518391|42|LS483441|PILER-CR matches to NZ_CP023526 (Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.81

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
taggtcaccagttcgattccggtagtcggcaccagaatgcgg	Protospacer
*************************.********     * .

18. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.83

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc--	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccac--ttcatccccctg	Protospacer
****************.******.***********   * **.**.*  

19. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.83

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc------	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccac------ttcctccccttg	Protospacer
****************.******.***********      ******      

20. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.83

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc------	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccac------ttcctccccttg	Protospacer
****************.******.***********      ******      

21. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.809

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc------	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccac------ttcttcccctca	Protospacer
****************.******.***********      ***.**      

22. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 9, identity: 0.809

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc------	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccac------ttcttcccctca	Protospacer
****************.******.***********      ***.**      

23. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.809

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc------	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccac------ttcttcccttcg	Protospacer
****************.******.***********      ***.**      

24. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 9, identity: 0.809

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc-----	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccat-----tttcctcacagc	Protospacer
****************.******.**********.      ******     

25. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.809

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc-----	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccat-----tttcctcaaggt	Protospacer
****************.******.**********.      ******     

26. spacer 2.1|518391|42|LS483441|PILER-CR matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 10, identity: 0.762

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
aaggtcaccagttcgattccggtagtcggcacaaaataaagg	Protospacer
 ************************.****** *  *.   .

27. spacer 2.1|518391|42|LS483441|PILER-CR matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 10, identity: 0.762

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
aaggtcaccagttcgattccggtagtcggcacaaaataaagg	Protospacer
 ************************.****** *  *.   .

28. spacer 2.1|518391|42|LS483441|PILER-CR matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 10, identity: 0.762

taggtcaccagttcgattccggtagccggcaccatttgccca	CRISPR spacer
aaggtcaccagttcgattccggtagtcggcacaaaataaagg	Protospacer
 ************************.****** *  *.   .

29. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.787

cgtgtcggcggttcgattccgtctctgggcaccac-------gaataattcctc	CRISPR spacer
cgtgtcggcggttcgattccgtctctggccaccacactgctggggta-------	Protospacer
**************************** ******       *..**       

30. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.787

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc--------	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccac--------cctcccttcgaa	Protospacer
****************.******.***********        ****        

31. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.787

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc-----	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccat-----tctcctcacggt	Protospacer
****************.******.**********.      .*****     

32. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 10, identity: 0.787

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc-----	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccat-----tctcctcacggt	Protospacer
****************.******.**********.      .*****     

33. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.787

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc-----	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccat-----tttccttttgcc	Protospacer
****************.******.**********.      *****.     

34. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 10, identity: 0.787

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc-----	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccat-----tttccttttgcc	Protospacer
****************.******.**********.      *****.     

35. spacer 3.1|1407260|34|LS483441|CRISPRCasFinder matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.706

gctgccatcgcctcgacgcttgttgccattggcg	CRISPR spacer
ctcgtcatcgcatcgacgctcgttgccatgctca	Protospacer
 ..*.****** ********.********   *.

36. spacer 3.1|1407260|34|LS483441|CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 10, identity: 0.706

gctgccatcgcctcgacgcttgttgccattggcg	CRISPR spacer
ctcgtcatcgcatcgacgctcgttgccatgctca	Protospacer
 ..*.****** ********.********   *.

37. spacer 2.2|518470|47|LS483441|PILER-CR matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 11, identity: 0.766

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc--------	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcacca--------ttctcttcaagca	Protospacer
****************.******.**********        *.***        

38. spacer 2.2|518470|47|LS483441|PILER-CR matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 11, identity: 0.766

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc------	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccat------tccctttcaagc	Protospacer
****************.******.**********.      *.***.      

39. spacer 2.2|518470|47|LS483441|PILER-CR matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 11, identity: 0.766

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc--------	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcacca--------ttctcttcaagca	Protospacer
****************.******.**********        *.***        

40. spacer 2.2|518470|47|LS483441|PILER-CR matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 12, identity: 0.745

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc	CRISPR spacer
cgtgtcggcggttcaattccgtccctgggcaccattctcccttctgt	Protospacer
**************.********.**********.   .  ***. .

41. spacer 2.2|518470|47|LS483441|PILER-CR matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 12, identity: 0.745

cgtgtcggcggttcgattccgtctctgggcaccacgaataattcctc	CRISPR spacer
cgtgtcggcggttcgactccgtccctgggcaccatcctccctccttt	Protospacer
****************.******.**********.   .  *.*.*.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 352809 : 366815 9 Shigella_phage(28.57%) integrase,transposase attL 353068:353082|attR 364509:364523
DBSCAN-SWA_2 705571 : 715540 10 uncultured_Mediterranean_phage(25.0%) NA NA
DBSCAN-SWA_3 905873 : 947853 53 Vibrio_phage(14.29%) integrase,holin,portal,capsid,terminase,tail,head attL 913148:913163|attR 919523:919538
DBSCAN-SWA_4 1672166 : 1716456 39 Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(18.18%) integrase,transposase,tRNA attL 1706780:1706828|attR 1716457:1716505
DBSCAN-SWA_5 1924919 : 1932575 8 Mycoplasma_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage