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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS483440 Gemella morbillorum strain NCTC11323 genome assembly, chromosome: 1 1 crisprs cas3,cas9,WYL,DEDDh,csa3 0 2 5 0

Results visualization

1. LS483440
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483440_1 639099-639175 Unclear NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LS483440_1 1.1|639124|27|LS483440|CRISPRCasFinder 639124-639150 27 NZ_CP016476 Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence 237931-237957 4 0.852
LS483440_2 2.1|651643|27|LS483440|CRISPRCasFinder 651643-651669 27 NC_011256 Borrelia duttonii Ly plasmid pl70, complete sequence 21014-21040 5 0.815
LS483440_1 1.1|639124|27|LS483440|CRISPRCasFinder 639124-639150 27 NC_011774 Bacillus cereus G9842 plasmid pG9842_140, complete sequence 2198-2224 6 0.778
LS483440_2 2.1|651643|27|LS483440|CRISPRCasFinder 651643-651669 27 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 881287-881313 6 0.778
LS483440_2 2.1|651643|27|LS483440|CRISPRCasFinder 651643-651669 27 MN693747 Marine virus AFVG_250M949, complete genome 19208-19234 6 0.778

1. spacer 1.1|639124|27|LS483440|CRISPRCasFinder matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.852

tcaaagttacatatctaaaaatcaagt	CRISPR spacer
tcaaagttaaatttctaaaaatcatat	Protospacer
********* ** *********** .*

2. spacer 2.1|651643|27|LS483440|CRISPRCasFinder matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 5, identity: 0.815

actcagggagatgtaaaagaagatatt	CRISPR spacer
tttaaggaagatgtaaaaaaagatatt	Protospacer
 .* ***.**********.********

3. spacer 1.1|639124|27|LS483440|CRISPRCasFinder matches to NC_011774 (Bacillus cereus G9842 plasmid pG9842_140, complete sequence) position: , mismatch: 6, identity: 0.778

tcaaagttacatatctaaaaatcaagt	CRISPR spacer
aataaataacatatctaaaaatcaaga	Protospacer
   **.* ****************** 

4. spacer 2.1|651643|27|LS483440|CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 6, identity: 0.778

actcagggagatgtaaaagaagatatt	CRISPR spacer
ttccacgtagatgtaaaagaagatatc	Protospacer
 ..** * ******************.

5. spacer 2.1|651643|27|LS483440|CRISPRCasFinder matches to MN693747 (Marine virus AFVG_250M949, complete genome) position: , mismatch: 6, identity: 0.778

actcagggagatgtaaaagaagatatt	CRISPR spacer
gttataggagatgtaacagaagatatt	Protospacer
..*  .********** **********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 628212 : 664840 56 Streptococcus_phage(40.62%) holin,terminase,portal,capsid NA
DBSCAN-SWA_2 797959 : 809449 8 Synechococcus_phage(28.57%) NA NA
DBSCAN-SWA_3 1132690 : 1139320 9 Moumouvirus(16.67%) NA NA
DBSCAN-SWA_4 1281391 : 1328185 51 Erysipelothrix_phage(41.94%) holin,terminase,head,portal,tail,protease,tRNA,bacteriocin,capsid NA
DBSCAN-SWA_5 1384896 : 1391258 8 Staphylococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage