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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LS483450 Streptococcus pneumoniae strain 4041STDY6583227 genome assembly, chromosome: 1 5 crisprs NA 6 1 0 0

Results visualization

1. LS483450
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483450_1 95639-95734 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483450_2 128776-129357 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483450_3 793502-793587 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483450_4 1110377-1110456 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LS483450_5 1490781-1490917 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
LS483450_2 2.3|128938|18|LS483450|CRT 128938-128955 18 LS483450.1 128758-128775 0 1.0
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 LS483450.1 1818055-1818084 0 1.0
LS483450_2 2.1|128818|18|LS483450|CRT 128818-128835 18 LS483450.1 128758-128775 2 0.889
LS483450_2 2.4|128998|18|LS483450|CRT 128998-129015 18 LS483450.1 128758-128775 2 0.889
LS483450_2 2.6|129118|18|LS483450|CRT 129118-129135 18 LS483450.1 1864605-1864622 2 0.889
LS483450_2 2.8|129238|18|LS483450|CRT 129238-129255 18 LS483450.1 1298506-1298523 2 0.889

1. spacer 2.3|128938|18|LS483450|CRT matches to position: 128758-128775, mismatch: 0, identity: 1.0 

ttggctccaaaacaacgg	CRISPR spacer
ttggctccaaaacaacgg	Protospacer
******************

2. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to position: 1818055-1818084, mismatch: 0, identity: 1.0 

gctctttgtcaactgtagtgggttgaagtc	CRISPR spacer
gctctttgtcaactgtagtgggttgaagtc	Protospacer
******************************

3. spacer 2.1|128818|18|LS483450|CRT matches to position: 128758-128775, mismatch: 2, identity: 0.889 

ttggctccaatacaatgg	CRISPR spacer
ttggctccaaaacaacgg	Protospacer
********** ****.**

4. spacer 2.4|128998|18|LS483450|CRT matches to position: 128758-128775, mismatch: 2, identity: 0.889 

ttggctccaatacaatgg	CRISPR spacer
ttggctccaaaacaacgg	Protospacer
********** ****.**

5. spacer 2.6|129118|18|LS483450|CRT matches to position: 1864605-1864622, mismatch: 2, identity: 0.889 

ttggctccaatacaacga	CRISPR spacer
ttggccctaatacaacga	Protospacer
*****.*.**********

6. spacer 2.8|129238|18|LS483450|CRT matches to position: 1298506-1298523, mismatch: 2, identity: 0.889 

atggctccaaaacaacag	CRISPR spacer
atggatccgaaacaacag	Protospacer
**** ***.*********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 MK448817 Streptococcus phage Javan59, complete genome 41452-41481 1 0.967
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 MK448405 Streptococcus satellite phage Javan293, complete genome 10768-10797 2 0.933
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 KY065475 Streptococcus phage IPP35, complete genome 21704-21733 3 0.9
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 MH937476 Streptococcus phage CHPC933, partial genome 26091-26120 4 0.867
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP015284 Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence 83115-83144 4 0.867
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP020429 Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence 118713-118742 4 0.867
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP015284 Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence 55241-55270 5 0.833
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NC_012642 Streptococcus parasanguinis plasmid pFW213, complete sequence 1560-1589 5 0.833
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP016699 Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence 36883-36912 5 0.833
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 MN480762 Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence 10596-10625 5 0.833
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 MN480762 Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence 168251-168280 5 0.833
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP016733 Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4E, complete sequence 19067-19096 5 0.833
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP020429 Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence 98135-98164 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP041262 Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R1, complete sequence 55029-55058 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP043524 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_05, complete sequence 28578-28607 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP013995 Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence 80441-80470 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP014450 Enterococcus faecium strain ATCC 700221 plasmid unnamed1, complete sequence 29008-29037 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP027502 Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence 55406-55435 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP016715 Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence 20508-20537 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP040803 Streptococcus salivarius strain LAB813 plasmid pSAL813, complete sequence 65781-65810 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_LR135279 Enterococcus faecium isolate E6975 plasmid 2 44791-44820 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_LR135236 Enterococcus faecium isolate E7067 plasmid 2 36603-36632 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_AP018502 Lactococcus lactis subsp. cremoris strain C4 plasmid pC43, complete sequence 13248-13277 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP041256 Enterococcus faecium strain 515 plasmid p26, complete sequence 10619-10648 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_LR135220 Enterococcus faecium isolate E7040 plasmid 2 36627-36656 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_LR134106 Enterococcus faecium isolate E6043 plasmid 2 36627-36656 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP023514 Enterococcus sp. FDAARGOS_375 plasmid unnamed1, complete sequence 139819-139848 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP040876 Enterococcus faecium strain DB-1 plasmid punnamed2 74007-74036 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP019993 Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence 46625-46654 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP035655 Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence 78878-78907 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP035661 Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence 72511-72540 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP035667 Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence 72513-72542 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP035649 Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence 78881-78910 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP051519 Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence 39090-39119 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP041271 Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S1, complete sequence 55028-55057 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP040237 Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence 55030-55059 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NC_020208 Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence 121228-121257 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP034948 Enterococcus faecium strain NM213 plasmid unnamed5, complete sequence 64834-64863 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP012461 Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence 55439-55468 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP016687 Lactococcus lactis subsp. cremoris strain 158 plasmid p158C, complete sequence 17331-17360 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NC_019430 Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence 14618-14647 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP018832 Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence 180658-180687 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP040906 Enterococcus faecium strain FB-1 plasmid punnamed, complete sequence 113822-113851 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP027518 Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence 150476-150505 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP027498 Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence 174622-174651 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP016744 Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2C, complete sequence 19044-19073 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 MT074686 Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence 73334-73363 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP025756 Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence 63466-63495 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP031539 Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107A, complete sequence 22005-22034 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_LR135476 Enterococcus faecium isolate E8423 plasmid 2 151352-151381 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP016738 Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3B, complete sequence 19020-19049 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NC_017493 Lactococcus lactis subsp. cremoris A76 plasmid pQA549, complete sequence 16775-16804 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NC_021987 Enterococcus faecium Aus0085 plasmid p1, complete sequence 76652-76681 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_LR135358 Enterococcus faecium isolate E7948 plasmid 2 169630-169659 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP044265 Enterococcus faecium strain V1836 plasmid pHVH-V1836-1, complete sequence 110146-110175 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP016708 Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109B, complete sequence 14621-14650 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NC_017478 Lactococcus lactis plasmid pSK11L, complete sequence 19222-19251 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP020439 Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence 75999-76028 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP018188 Streptococcus salivarius strain ICDC2 plasmid, complete sequence 47119-47148 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_AP022342 Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence 223060-223089 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NC_008506 Lactococcus lactis subsp. cremoris SK11 plasmid 4, complete sequence 44471-44500 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_LR135308 Enterococcus faecium isolate E7240 plasmid 2 140232-140261 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_CP018827 Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence 180658-180687 6 0.8
LS483450_3 3.1|793530|30|LS483450|CRISPRCasFinder 793530-793559 30 NZ_MF150536 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03P plasmid pLd8, complete sequence 19156-19185 6 0.8

1. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to MK448817 (Streptococcus phage Javan59, complete genome) position: , mismatch: 1, identity: 0.967 

gctctttgtcaactgtagtgggttgaagtc	CRISPR spacer
gctctttgtcaactgtagtgggttgatgtc	Protospacer
************************** ***

2. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to MK448405 (Streptococcus satellite phage Javan293, complete genome) position: , mismatch: 2, identity: 0.933 

gctctttgtcaactgtagtgggttgaagtc	CRISPR spacer
gctctttgtcaactgtagtgggtagatgtc	Protospacer
*********************** ** ***

3. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to KY065475 (Streptococcus phage IPP35, complete genome) position: , mismatch: 3, identity: 0.9 

gctctttgtcaactgtagtgggttgaagtc	CRISPR spacer
gctctttgtcaactgtagtgggttgaaaaa	Protospacer
***************************.

4. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to MH937476 (Streptococcus phage CHPC933, partial genome) position: , mismatch: 4, identity: 0.867 

gctctttgtcaactgtagtgggttgaagtc	CRISPR spacer
gctctttgtcaactgtagtgggtagatgaa	Protospacer
*********************** ** *

5. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP015284 (Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence) position: , mismatch: 4, identity: 0.867 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
gctctttgtcaactgtagtgggtgacgaaa--	Protospacer
***********************  .***.

6. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP020429 (Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.867 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
gctccttgtcaactgtagtgggtgatgaaa--	Protospacer
****.******************  ****.

7. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP015284 (Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence) position: , mismatch: 5, identity: 0.833 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
gttctttgtcaactgtagtgggtgacgaaa--	Protospacer
*.*********************  .***.

8. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NC_012642 (Streptococcus parasanguinis plasmid pFW213, complete sequence) position: , mismatch: 5, identity: 0.833 

gctctttgtcaactgtagtgggttgaagtc	CRISPR spacer
gctcattgtcaactgtagtgggtggacata	Protospacer
**** ****************** ** .*

9. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 5, identity: 0.833 

gctctttgtcaactgtagtgggttgaagtc	CRISPR spacer
gctctttgtcaaccgtagtgggtagatgaa	Protospacer
*************.********* ** *

10. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 5, identity: 0.833 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
gctctctgtcaactgtagtgggtgacgaaa--	Protospacer
*****.*****************  .***.

11. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 5, identity: 0.833 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
gctctctgtcaactgtagtgggtgacgaaa--	Protospacer
*****.*****************  .***.

12. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP016733 (Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4E, complete sequence) position: , mismatch: 5, identity: 0.833 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgatgaaa--	Protospacer
* *** *****************  ****.

13. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP020429 (Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
gatccttgtcaactgtagtgggtgacgaaa--	Protospacer
* **.******************  .***.

14. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP041262 (Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

15. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP043524 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_05, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

16. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP013995 (Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

17. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP014450 (Enterococcus faecium strain ATCC 700221 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

18. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP027502 (Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

19. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP016715 (Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

20. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP040803 (Streptococcus salivarius strain LAB813 plasmid pSAL813, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
gctcttagtcaactgtagtgagtgacgaaa--	Protospacer
****** *************.**  .***.

21. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

22. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_LR135236 (Enterococcus faecium isolate E7067 plasmid 2) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

23. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_AP018502 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC43, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

24. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP041256 (Enterococcus faecium strain 515 plasmid p26, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

25. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_LR135220 (Enterococcus faecium isolate E7040 plasmid 2) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

26. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_LR134106 (Enterococcus faecium isolate E6043 plasmid 2) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

27. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP023514 (Enterococcus sp. FDAARGOS_375 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

28. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP040876 (Enterococcus faecium strain DB-1 plasmid punnamed2) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

29. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP019993 (Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

30. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP035655 (Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

31. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP035661 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

32. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP035667 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

33. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP035649 (Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

34. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP051519 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

35. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP041271 (Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

36. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP040237 (Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

37. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NC_020208 (Enterococcus faecium ATCC 8459 = NRRL B-2354 plasmid pNB2354_1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

38. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP034948 (Enterococcus faecium strain NM213 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

39. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP012461 (Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

40. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP016687 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158C, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

41. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NC_019430 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

42. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP018832 (Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

43. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP040906 (Enterococcus faecium strain FB-1 plasmid punnamed, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

44. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP027518 (Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

45. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP027498 (Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

46. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP016744 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2C, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

47. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to MT074686 (Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

48. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP025756 (Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

49. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP031539 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107A, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

50. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_LR135476 (Enterococcus faecium isolate E8423 plasmid 2) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

51. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP016738 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3B, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

52. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NC_017493 (Lactococcus lactis subsp. cremoris A76 plasmid pQA549, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

53. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NC_021987 (Enterococcus faecium Aus0085 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

54. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_LR135358 (Enterococcus faecium isolate E7948 plasmid 2) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

55. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP044265 (Enterococcus faecium strain V1836 plasmid pHVH-V1836-1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

56. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP016708 (Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109B, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

57. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NC_017478 (Lactococcus lactis plasmid pSK11L, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

58. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
gctctatgtcaattgtagtgggtgacgaaa--	Protospacer
***** ******.**********  .***.

59. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP018188 (Streptococcus salivarius strain ICDC2 plasmid, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
gctcgatgtcaactgtagtgggtgacgaaa--	Protospacer
****  *****************  .***.

60. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_AP022342 (Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

61. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NC_008506 (Lactococcus lactis subsp. cremoris SK11 plasmid 4, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

62. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_LR135308 (Enterococcus faecium isolate E7240 plasmid 2) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

63. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_CP018827 (Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

64. spacer 3.1|793530|30|LS483450|CRISPRCasFinder matches to NZ_MF150536 (Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03P plasmid pLd8, complete sequence) position: , mismatch: 6, identity: 0.8 

gctctttgtcaactgtagtgggt--tgaagtc	CRISPR spacer
ggtctatgtcaactgtagtgggtgacgaaa--	Protospacer
* *** *****************  .***.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage