CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483453	Salmonella enterica subsp. enterica serovar Aberdeen strain NCTC5791 genome assembly, chromosome: 1	2 crisprs	PD-DExK,WYL,cas3,csa3,DEDDh,DinG	0	23	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483453_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483453_2

949654-949865

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCGG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

3 spacers

cas3

The CRISPR arrays of LS483453_2

>merge|LS483453|2|949654-949865|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTGTCCTTTTTCATGTTGATGATGTCGCCCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCACTAACATTTTTGGAGTTGGCTCAACAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCACGAGGTCTGACGCGGATGTGATGAGTTAGTGTTCCCCGCGCCAGCGGGGATAGCCGT

>LS483453|2|1|949654-949805|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGT	TGTCCTTTTTCATGTTGATGATGTCGCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCGG	CCACTAACATTTTTGGAGTTGGCTCAACAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCGG

>LS483453|2|2|949654-949865|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTCCTTTTTCATGTTGATGATGTCGCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCACTAACATTTTTGGAGTTGGCTCAACAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAGGTCTGACGCGGATGTGATGAGTTA
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

>LS483453|2|1|949654-949865|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTCCTTTTTCATGTTGATGATGTCGCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCACTAACATTTTTGGAGTTGGCTCAACAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCACGAGGTCTGACGCGGATGTGATGAGTTA
GTGTTCCCCGCGCCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483453.1\|SQH79363.1\|963805_965245_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483453.1\|SQH79356.1\|951645_953445_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483453.1\|SQH79361.1\|961590_962637_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483453.1\|SQH79352.1\|947251_948550_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483453.1\|SQH79347.1\|940799_943034_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LS483453.1\|SQH79357.1\|953444_955157_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483453.1\|SQH79353.1\|948685_949357_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483453.1\|SQH79360.1\|957452_959669_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483453.1\|SQH79350.1\|944503_945304_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483453.1\|SQH79354.1\|949963_950761_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483453.1\|SQH79355.1\|950848_951211_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483453.1\|SQH79348.1\|943186_943474_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	unknown	unknown	gnl\|CDD\|226136
LS483453.1\|SQH79349.1\|943439_943736_+\|ParE-toxin-protein	unknown	unknown	gnl\|CDD\|226194
LS483453.1\|SQH79359.1\|956054_957008_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483453.1\|SQH79345.1\|936638_939395_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	unknown	unknown	gnl\|CDD\|236848
LS483453.1\|SQH79362.1\|962887_963796_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483453.1\|SQH79351.1\|945531_947169_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483453.1\|SQH79346.1\|939452_940748_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|237291
LS483453.1\|SQH79344.1\|935452_936595_+\|Glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
LS483453.1\|SQH79358.1\|955232_955967_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
LS483453.1\|SQH79363.1\|963805_965245_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483453.1\|SQH79356.1\|951645_953445_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483453.1\|SQH79361.1\|961590_962637_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483453.1\|SQH79352.1\|947251_948550_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483453.1\|SQH79347.1\|940799_943034_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LS483453.1\|SQH79357.1\|953444_955157_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483453.1\|SQH79353.1\|948685_949357_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	5.23698e-155
LS483453.1\|SQH79360.1\|957452_959669_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.56573e-165
LS483453.1\|SQH79350.1\|944503_945304_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
LS483453.1\|SQH79354.1\|949963_950761_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.32518e-101
LS483453.1\|SQH79355.1\|950848_951211_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LS483453.1\|SQH79348.1\|943186_943474_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	4.75155e-18
LS483453.1\|SQH79349.1\|943439_943736_+\|ParE-toxin-protein	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	3.34398e-13
LS483453.1\|SQH79359.1\|956054_957008_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483453.1\|SQH79345.1\|936638_939395_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
LS483453.1\|SQH79362.1\|962887_963796_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483453.1\|SQH79351.1\|945531_947169_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483453.1\|SQH79346.1\|939452_940748_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LS483453.1\|SQH79344.1\|935452_936595_+\|Glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
LS483453.1\|SQH79358.1\|955232_955967_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.50033e-138

>LS483453.1|SQH79353.1|948685_949357_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483453.1|SQH79352.1|947251_948550_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483453.1|SQH79351.1|945531_947169_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LS483453.1|SQH79350.1|944503_945304_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483453.1|SQH79349.1|943439_943736_+|ParE-toxin-protein
MRTVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>LS483453.1|SQH79348.1|943186_943474_+|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain
MARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>LS483453.1|SQH79347.1|940799_943034_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>LS483453.1|SQH79346.1|939452_940748_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>LS483453.1|SQH79345.1|936638_939395_-|BarA-sensory-histidine-kinase-(VarS-/-GacS)
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>LS483453.1|SQH79344.1|935452_936595_+|Glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>LS483453.1|SQH79354.1|949963_950761_+|beta-lactamase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGIIRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483453.1|SQH79355.1|950848_951211_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LS483453.1|SQH79356.1|951645_953445_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAGASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPDLVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LS483453.1|SQH79357.1|953444_955157_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483453.1|SQH79358.1|955232_955967_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483453.1|SQH79359.1|956054_957008_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483453.1|SQH79360.1|957452_959669_+|helicase
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQVPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWRVPRASGDKPRPHIMAAWRLGCSPR
>LS483453.1|SQH79361.1|961590_962637_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALVIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483453.1|SQH79362.1|962887_963796_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483453.1|SQH79363.1|963805_965245_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA

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Crispr_ID: LS483453_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483453_3

959593-961576

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCTAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRT

32 spacers

The CRISPR arrays of LS483453_3

>merge|LS483453|3|959593-961576|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCGCGACCTCATATAATGGCGGCGTGGCGATTGGGGTGTTCCCCGCGCTAGCGGGGATAAACCGACCGCGCGGGCCTGTTGATAGACCAGTATGGCGTGTTCCCCGCGCTAGCGGGGATAAACCGCAGGTCACTAAAATTTGTAGGGTTATCCACAGGTGTTCCCCGCGCTAGCGGGGATAAACCGCTGGGCGTTGAGTGCCGCGAAATGCACGAACGCGTGTTCCCCGCGCTAGCGGGGATAAACCGGCCTGCCTGTAATCGATGATCACCAGTGCCGAGTGTTCCCCGCGCTAGCGGGGATAAACCGCGGAGGCGCGTTACATCTTCCGCTTTGTCGCTGTGTTCCCCGCGCTAGCGGGGATAAACCGGCTCCCGTGCGTTTTTAAAGGGGGTTTAATAGGTGTTCCCCGCGCTAGCGGGGATAAACCGAAATGTTTACACCTTCAAATACAGGTGAGAAAGTGTTCCCCGCGCTAGCGGGGATAAACCGTAGGCGGCACTGCATATACGGTCCGTAAACTAGTGTTCCCCGCGCTAGCGGGGATAAACCGGCGAAAATTGCAGGAATCTACGCCAACGGATTGTGTTCCCCGCGCTAGCGGGGATAAACCCCCTCAACATACTCACCTCGCTGGGCTGCGAGCGTGTTCCCCGCGCTAGCGGGGATAAACCGCAGGCGATGATTGCGGGCGCGCTGCAAGCGGTGTGTTCCCCGCGCTAGCGGGGATAAACCGCCGGAGCCTGACCAGGATTTTTCCGCCGTGTACGTGTTCCCCGCGCTAGCGGGGATAAACCGTATAATTGGCGTCCATATATCTGGATATTTACGTGTTCCCCGCGCTAGCGGGGATAAACCGTTTAAATAGTGGGGTGATCCCGGTGAAAATCCGTGTTCCCCGCGCTAGCGGGGATAAACCGTCGTCACGCGACATGCTGGACAGTGTGTGTAAGTGTTCCCCGCGCTAGCGGGGATAAACCGTTATTGTTTTCATTTTTAAATATTGGATATATGTGTTCCCCGCGCTAGCGGGGATAAACCGAATTTGCTCCGGAAATAGATAAAGCGCAGAAAGTGTTCCCCGCGCTAGCGGGGATAAACCGTCTGCTGCTGATACCGTGGAAGTGGTGGCGCAGTGTTCCCCGCGCTAGCGGGGATAAACCGCATTTGTAGGAGCGATTGTTGTAGGACAGTGTGTGTTCCCCGCGCTAGCGGGGATAAACCGACACCGCCCCTAAATCAGCGCAGCCCGCACCAGTGTTCCCCGCGCTAGCGGGGATAAACCGTCGGCAGCTACTTCAGTGTTAGGCGGCATCCAGTGTTCCCCGCGCTAGCGGGGATAAACCGCCACGGCGCAGGAAATCTCCTTTGTAACAGGGGTGTTCCCCGCGCTAGCGGGGATAAACCGGTCTTATAAATTGGGCTGATAGTGCCGCTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGTACCTGCCGCTACCGCGCTGGACTGCGCCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTAATCTCTCTATTTATAATCTGTATTGTACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAACTGGTGATACGGTTATGTCTCCGTATCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGATCGAGTATTGCTCGTTGTCGGCGTGGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTAATCAACTCAATGCGCTCACAACGCAATGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGATCGCGCAAATCGCTGCGAGTATTCAGGGTGTTCCCCGCGTCAGCGGGGATAAACCGTCCACGTCGCCCGCCATCAGGTTCGCCAGCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483453|3|2|959593-961515|PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGACCTCATATAATGGCGGCGTGGCGATTGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACCGCGCGGGCCTGTTGATAGACCAGTATGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTGGGCGTTGAGTGCCGCGAAATGCACGAACGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCCTGCCTGTAATCGATGATCACCAGTGCCGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGAGGCGCGTTACATCTTCCGCTTTGTCGCT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCTCCCGTGCGTTTTTAAAGGGGGTTTAATAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAATGTTTACACCTTCAAATACAGGTGAGAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAGGCGGCACTGCATATACGGTCCGTAAACTA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCGAAAATTGCAGGAATCTACGCCAACGGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCC	CCTCAACATACTCACCTCGCTGGGCTGCGAGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGGCGATGATTGCGGGCGCGCTGCAAGCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGAGCCTGACCAGGATTTTTCCGCCGTGTAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TATAATTGGCGTCCATATATCTGGATATTTAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTAAATAGTGGGGTGATCCCGGTGAAAATCC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGTCACGCGACATGCTGGACAGTGTGTGTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTATTGTTTTCATTTTTAAATATTGGATATAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AATTTGCTCCGGAAATAGATAAAGCGCAGAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCTGCTGCTGATACCGTGGAAGTGGTGGCGCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CATTTGTAGGAGCGATTGTTGTAGGACAGTGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACACCGCCCCTAAATCAGCGCAGCCCGCACCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCACGGCGCAGGAAATCTCCTTTGTAACAGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTCTTATAAATTGGGCTGATAGTGCCGCTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCTGCCGCTACCGCGCTGGACTGCGCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTAATCTCTCTATTTATAATCTGTATTGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACTGGTGATACGGTTATGTCTCCGTATCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAATCAACTCAATGCGCTCACAACGCAATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGATCGCGCAAATCGCTGCGAGTATTCAGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LS483453|3|3|959593-961576|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGACCTCATATAATGGCGGCGTGGCGATTGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACCGCGCGGGCCTGTTGATAGACCAGTATGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTGGGCGTTGAGTGCCGCGAAATGCACGAACGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCCTGCCTGTAATCGATGATCACCAGTGCCGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGAGGCGCGTTACATCTTCCGCTTTGTCGCT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCTCCCGTGCGTTTTTAAAGGGGGTTTAATAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAATGTTTACACCTTCAAATACAGGTGAGAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAGGCGGCACTGCATATACGGTCCGTAAACTA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCGAAAATTGCAGGAATCTACGCCAACGGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCC	CCTCAACATACTCACCTCGCTGGGCTGCGAGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGGCGATGATTGCGGGCGCGCTGCAAGCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGAGCCTGACCAGGATTTTTCCGCCGTGTAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TATAATTGGCGTCCATATATCTGGATATTTAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTAAATAGTGGGGTGATCCCGGTGAAAATCC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGTCACGCGACATGCTGGACAGTGTGTGTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTATTGTTTTCATTTTTAAATATTGGATATAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AATTTGCTCCGGAAATAGATAAAGCGCAGAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCTGCTGCTGATACCGTGGAAGTGGTGGCGCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CATTTGTAGGAGCGATTGTTGTAGGACAGTGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACACCGCCCCTAAATCAGCGCAGCCCGCACCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCACGGCGCAGGAAATCTCCTTTGTAACAGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTCTTATAAATTGGGCTGATAGTGCCGCTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCTGCCGCTACCGCGCTGGACTGCGCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTAATCTCTCTATTTATAATCTGTATTGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACTGGTGATACGGTTATGTCTCCGTATCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAATCAACTCAATGCGCTCACAACGCAATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGATCGCGCAAATCGCTGCGAGTATTCAGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483453|3|2|959593-961576|CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGACCTCATATAATGGCGGCGTGGCGATTGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACCGCGCGGGCCTGTTGATAGACCAGTATGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGGTCACTAAAATTTGTAGGGTTATCCACAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTGGGCGTTGAGTGCCGCGAAATGCACGAACGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCCTGCCTGTAATCGATGATCACCAGTGCCGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGGAGGCGCGTTACATCTTCCGCTTTGTCGCT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCTCCCGTGCGTTTTTAAAGGGGGTTTAATAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAATGTTTACACCTTCAAATACAGGTGAGAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAGGCGGCACTGCATATACGGTCCGTAAACTA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCGAAAATTGCAGGAATCTACGCCAACGGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCC	CCTCAACATACTCACCTCGCTGGGCTGCGAGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CAGGCGATGATTGCGGGCGCGCTGCAAGCGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGGAGCCTGACCAGGATTTTTCCGCCGTGTAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TATAATTGGCGTCCATATATCTGGATATTTAC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTTAAATAGTGGGGTGATCCCGGTGAAAATCC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGTCACGCGACATGCTGGACAGTGTGTGTAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TTATTGTTTTCATTTTTAAATATTGGATATAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AATTTGCTCCGGAAATAGATAAAGCGCAGAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCTGCTGCTGATACCGTGGAAGTGGTGGCGCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CATTTGTAGGAGCGATTGTTGTAGGACAGTGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACACCGCCCCTAAATCAGCGCAGCCCGCACCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCACGGCGCAGGAAATCTCCTTTGTAACAGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTCTTATAAATTGGGCTGATAGTGCCGCTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCTGCCGCTACCGCGCTGGACTGCGCCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTAATCTCTCTATTTATAATCTGTATTGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAACTGGTGATACGGTTATGTCTCCGTATCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAATCAACTCAATGCGCTCACAACGCAATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGATCGCGCAAATCGCTGCGAGTATTCAGG
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483453.1\|SQH79368.1\|967441_967921_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LS483453.1\|SQH79354.1\|949963_950761_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483453.1\|SQH79367.1\|966731_967442_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LS483453.1\|SQH79361.1\|961590_962637_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483453.1\|SQH79352.1\|947251_948550_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483453.1\|SQH79370.1\|968947_969709_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LS483453.1\|SQH79369.1\|967917_968967_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LS483453.1\|SQH79364.1\|965231_965837_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LS483453.1\|SQH79357.1\|953444_955157_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483453.1\|SQH79353.1\|948685_949357_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483453.1\|SQH79359.1\|956054_957008_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483453.1\|SQH79356.1\|951645_953445_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483453.1\|SQH79355.1\|950848_951211_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483453.1\|SQH79365.1\|965887_966211_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LS483453.1\|SQH79366.1\|966401_966713_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LS483453.1\|SQH79363.1\|963805_965245_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483453.1\|SQH79362.1\|962887_963796_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483453.1\|SQH79351.1\|945531_947169_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483453.1\|SQH79350.1\|944503_945304_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483453.1\|SQH79358.1\|955232_955967_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
LS483453.1\|SQH79368.1\|967441_967921_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
LS483453.1\|SQH79354.1\|949963_950761_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.32518e-101
LS483453.1\|SQH79367.1\|966731_967442_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
LS483453.1\|SQH79361.1\|961590_962637_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483453.1\|SQH79352.1\|947251_948550_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483453.1\|SQH79370.1\|968947_969709_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
LS483453.1\|SQH79369.1\|967917_968967_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LS483453.1\|SQH79364.1\|965231_965837_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LS483453.1\|SQH79357.1\|953444_955157_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483453.1\|SQH79353.1\|948685_949357_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	5.23698e-155
LS483453.1\|SQH79359.1\|956054_957008_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483453.1\|SQH79356.1\|951645_953445_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483453.1\|SQH79355.1\|950848_951211_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LS483453.1\|SQH79365.1\|965887_966211_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
LS483453.1\|SQH79366.1\|966401_966713_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LS483453.1\|SQH79363.1\|963805_965245_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483453.1\|SQH79362.1\|962887_963796_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483453.1\|SQH79351.1\|945531_947169_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483453.1\|SQH79350.1\|944503_945304_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
LS483453.1\|SQH79358.1\|955232_955967_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.50033e-138

>LS483453.1|SQH79359.1|956054_957008_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483453.1|SQH79358.1|955232_955967_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483453.1|SQH79357.1|953444_955157_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483453.1|SQH79356.1|951645_953445_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAGASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPDLVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LS483453.1|SQH79355.1|950848_951211_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LS483453.1|SQH79354.1|949963_950761_+|beta-lactamase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGIIRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483453.1|SQH79353.1|948685_949357_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483453.1|SQH79352.1|947251_948550_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483453.1|SQH79351.1|945531_947169_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LS483453.1|SQH79350.1|944503_945304_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483453.1|SQH79361.1|961590_962637_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALVIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483453.1|SQH79362.1|962887_963796_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483453.1|SQH79363.1|963805_965245_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LS483453.1|SQH79364.1|965231_965837_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LS483453.1|SQH79365.1|965887_966211_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LS483453.1|SQH79366.1|966401_966713_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LS483453.1|SQH79367.1|966731_967442_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LS483453.1|SQH79368.1|967441_967921_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LS483453.1|SQH79369.1|967917_968967_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LS483453.1|SQH79370.1|968947_969709_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP041350	Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence	279-310	5	0.844
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP009067	Borreliella afzelii K78 plasmid lp38, complete sequence	29252-29283	6	0.812
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_013516	Streptobacillus moniliformis DSM 12112 plasmid pSMON01, complete sequence	5942-5973	6	0.812
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP027399	Streptobacillus moniliformis strain FDAARGOS_310 plasmid unnamed, complete sequence	10436-10467	6	0.812
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_017237	Borreliella afzelii PKo plasmid lp38, complete sequence	27992-28023	6	0.812
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP014675	Kozakia baliensis strain DSM 14400 plasmid pKB14400_1, complete sequence	171734-171765	6	0.812
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	562790-562821	6	0.812
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	243956-243987	6	0.812
LS483453_2	2.1\|949684\|31\|LS483453\|PILER-CR	949684-949714	31	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	124925-124955	7	0.774
LS483453_3	3.4\|959805\|33\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	959805-959837	33	NZ_LR134450	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence	229748-229780	7	0.788
LS483453_3	3.5\|959867\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	959867-959898	32	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	375658-375689	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_KM583822	Helicobacter pylori strain UM352 plasmid pUM352, complete sequence	3977-4008	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_KM583823	Helicobacter pylori strain UM426 plasmid pUM426, complete sequence	3977-4008	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_KM583818	Helicobacter pylori strain UM171 plasmid pUM171, complete sequence	4030-4061	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_KM583809	Helicobacter pylori strain UM046 plasmid pUM046-2, complete sequence	3976-4007	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_KM583819	Helicobacter pylori strain UM196 plasmid pUM196, complete sequence	4000-4031	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_KM583816	Helicobacter pylori strain UM146 plasmid pUM146, complete sequence	4793-4824	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_017369	Helicobacter pylori F30 plasmid pHPF30, complete sequence	2020-2051	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_005917	Helicobacter pylori plasmid pAL202, complete sequence	6224-6255	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_015916	Borreliella bissettii DN127 plasmid lp28-3, complete sequence	3762-3793	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_010884	Helicobacter pylori strain 69 plasmid pHP69, complete sequence	4431-4462	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_004950	Helicobacter pylori plasmid pHel4 complete sequence	1515-1546	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_001476	Helicobacter pylori plasmid pHPM186, complete sequence	9424-9455	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_017383	Helicobacter pylori v225d plasmid pHPv225d, complete sequence	991-1022	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP053257	Helicobacter pylori A45 plasmid unnamed, complete sequence	3963-3994	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_011334	Helicobacter pylori G27 plasmid pHPG27, complete sequence	5184-5215	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_011499	Helicobacter pylori P12 plasmid HPP12, complete sequence	1520-1551	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_004845	Helicobacter pylori plasmid pHPM8, complete sequence	4857-4888	7	0.781
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	MN693954	Marine virus AFVG_250M569, complete genome	1118-1149	7	0.781
LS483453_3	3.25\|961088\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961088-961119	32	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	49975-50006	7	0.781
LS483453_3	3.25\|961088\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961088-961119	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	127440-127471	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1129847-1129878	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1783651-1783682	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	2012965-2012996	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1726765-1726796	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1171924-1171955	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1042739-1042770	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1783787-1783818	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1726762-1726793	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	236953-236984	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	148007-148038	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1726763-1726794	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1108332-1108363	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1041836-1041867	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1074580-1074611	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1074569-1074600	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1783312-1783343	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1042731-1042762	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1042087-1042118	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1042722-1042753	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1783257-1783288	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	370077-370108	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	235444-235475	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	350195-350226	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1129950-1129981	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1129944-1129975	7	0.781
LS483453_3	3.30\|961394\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961394-961425	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1129927-1129958	7	0.781
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP041350	Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence	180897-180928	7	0.781
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	549969-550000	7	0.781
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	10007-10038	7	0.781
LS483453_2	2.2\|949745\|31\|LS483453\|PILER-CR	949745-949775	31	MH629685	Synechococcus virus S-PRM1, complete genome	111326-111356	8	0.742
LS483453_2	2.3\|949683\|32\|LS483453\|CRISPRCasFinder,CRT	949683-949714	32	NZ_CP020810	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence	124925-124956	8	0.75
LS483453_2	2.4\|949744\|32\|LS483453\|CRISPRCasFinder,CRT	949744-949775	32	MH629685	Synechococcus virus S-PRM1, complete genome	111325-111356	8	0.75
LS483453_2	2.5\|949805\|32\|LS483453\|CRISPRCasFinder,CRT	949805-949836	32	JX434031	Pseudomonas phage JBD24, complete genome	2242-2273	8	0.75
LS483453_3	3.5\|959867\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	959867-959898	32	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	1118569-1118600	8	0.75
LS483453_3	3.6\|959928\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	959928-959959	32	NZ_CP043058	Dolichospermum sp. UHCC 0315A plasmid pUHCC0315b, complete sequence	852-883	8	0.75
LS483453_3	3.10\|960172\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960172-960203	32	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	75434-75465	8	0.75
LS483453_3	3.12\|960294\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960294-960325	32	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	385471-385502	8	0.75
LS483453_3	3.14\|960417\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960417-960448	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	101688-101719	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	201814-201845	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	375403-375434	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	KJ183191	Podovirus Lau218 strain Abe, complete genome	3946-3977	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	KJ183191	Podovirus Lau218 strain Abe, complete genome	4181-4212	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	KJ183193	Podovirus Lau218 strain TahiMoana, complete genome	3979-4010	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	KJ183193	Podovirus Lau218 strain TahiMoana, complete genome	4214-4245	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	KJ183192	Podovirus Lau218 strain KiloMoana, complete genome	3979-4010	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	KJ183192	Podovirus Lau218 strain KiloMoana, complete genome	4214-4245	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP047087	Bacillus paranthracis strain BC307 plasmid pCE2, complete sequence	15714-15745	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP021506	Bacillus amyloliquefaciens strain SRCM101267 plasmid pBA1267-1 sequence	709-740	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP031559	Helicobacter pylori strain GD63 plasmid pHPGD63, complete sequence	6794-6825	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	CP041752	Bacillus paranthracis strain NCCP 14796 plasmid unnamed2, complete sequence	12224-12255	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP033935	Chryseobacterium balustinum strain KC_1863 plasmid unnamed, complete sequence	89596-89627	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	GQ478087	Enterococcus phage phiFL3B, complete genome	22734-22765	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	LC168164	Tenacibaculum phage pT24 DNA, complete genome	128382-128413	8	0.75
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NC_013648	Enterococcus phage phiFL3A, complete genome	22035-22066	8	0.75
LS483453_3	3.21\|960844\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960844-960875	32	NZ_CP022193	Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence	51755-51786	8	0.75
LS483453_3	3.26\|961149\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961149-961180	32	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	121356-121387	8	0.75
LS483453_3	3.26\|961149\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961149-961180	32	NZ_CP045608	Bacillus cereus strain SB1 plasmid p2, complete sequence	91726-91757	8	0.75
LS483453_3	3.26\|961149\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961149-961180	32	MT623546	Acinetobacter phage Ab_121, complete genome	52642-52673	8	0.75
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	324002-324033	8	0.75
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	315007-315038	8	0.75
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	285481-285512	8	0.75
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	122710-122741	8	0.75
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	412688-412719	8	0.75
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	MF150911	Ralstonia phage DU_RP_II, complete genome	2434-2465	8	0.75
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	MN996301	Ralstonia phage RpY1, complete genome	18901-18932	8	0.75
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NC_011273	Mycobacterium phage Myrna, complete genome	58326-58357	8	0.75
LS483453_3	3.8\|960050\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960050-960081	32	MN694121	Marine virus AFVG_250M768, complete genome	24635-24666	9	0.719
LS483453_3	3.12\|960294\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960294-960325	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1219152-1219183	9	0.719
LS483453_3	3.12\|960294\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960294-960325	32	NZ_CP049160	Caballeronia sp. SBC1 plasmid pSBC1_4, complete sequence	73354-73385	9	0.719
LS483453_3	3.12\|960294\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960294-960325	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2471445-2471476	9	0.719
LS483453_3	3.12\|960294\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960294-960325	32	NZ_CP040820	Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence	73136-73167	9	0.719
LS483453_3	3.12\|960294\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960294-960325	32	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	726763-726794	9	0.719
LS483453_3	3.12\|960294\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960294-960325	32	JN408461	Mycobacterium phage Trixie, complete genome	48145-48176	9	0.719
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	MT774408	CrAssphage cr130_1, complete genome	38857-38888	9	0.719
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	24375-24406	9	0.719
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_CP012100	Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence	493290-493321	9	0.719
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_LT670852	Candidatus Erwinia haradaeae strain ErCipseudotaxifoliae isolate 3056 plasmid pl1	7173-7204	9	0.719
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	NZ_LR217726	Candidatus Erwinia haradaeae strain ErCipseudotaxifoliae isolate 3056 plasmid pBioThi	3077-3108	9	0.719
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	AP014106	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C34-MedDCM-OCT-S43-C23, * SEQUENCING IN PROGRESS *	14085-14116	9	0.719
LS483453_3	3.17\|960600\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960600-960631	32	AP014104	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C34-MedDCM-OCT-S23-C43, * SEQUENCING IN PROGRESS *	9172-9203	9	0.719
LS483453_3	3.20\|960783\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960783-960814	32	NZ_CP011404	Lactobacillus salivarius str. Ren plasmid pR1, complete sequence	14553-14584	9	0.719
LS483453_3	3.20\|960783\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960783-960814	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	170532-170563	9	0.719
LS483453_3	3.26\|961149\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961149-961180	32	MK170160	Acinetobacter phage TAC1, complete genome	81250-81281	9	0.719
LS483453_3	3.28\|961272\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961272-961303	32	NZ_CP044991	Deinococcus sp. AJ005 plasmid p115k, complete sequence	39858-39889	9	0.719
LS483453_3	3.28\|961272\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961272-961303	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5620635-5620666	9	0.719
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	85269-85300	9	0.719
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	181739-181770	9	0.719
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP015040	Rhodovulum sp. P5 plasmid pRGUI01, complete sequence	68741-68772	9	0.719
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	NZ_CP016619	Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence	942394-942425	9	0.719
LS483453_3	3.31\|961455\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961455-961486	32	MH588547	Caulobacter phage CcrSC, complete genome	48931-48962	9	0.719
LS483453_2	2.3\|949683\|32\|LS483453\|CRISPRCasFinder,CRT	949683-949714	32	MH319749	Marine virus AG-345-F15 Ga0172271_11 genomic sequence	105398-105429	10	0.688
LS483453_3	3.16\|960539\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960539-960570	32	NZ_CP041045	Paracoccus sp. AK26 plasmid pAK1, complete sequence	27825-27856	10	0.688
LS483453_3	3.18\|960661\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960661-960692	32	NZ_CP009059	Borreliella afzelii K78 plasmid lp54, complete sequence	54433-54464	10	0.688
LS483453_3	3.18\|960661\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960661-960692	32	NZ_CP009214	Borreliella afzelii Tom3107 plasmid lp54, complete sequence	2823-2854	10	0.688
LS483453_3	3.18\|960661\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	960661-960692	32	NC_017241	Borreliella afzelii PKo plasmid lp54, complete sequence	55277-55308	10	0.688
LS483453_3	3.32\|961516\|32\|LS483453\|CRISPRCasFinder,CRT	961516-961547	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
LS483453_3	3.32\|961516\|32\|LS483453\|CRISPRCasFinder,CRT	961516-961547	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
LS483453_3	3.28\|961272\|32\|LS483453\|PILER-CR,CRISPRCasFinder,CRT	961272-961303	32	MH925092	UNVERIFIED: Vibrio phage VpaJT_1, complete genome	43017-43048	11	0.656

1. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041350 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence) position: , mismatch: 5, identity: 0.844

tccacgtcgcccgccatcaggttc-gccagctc	CRISPR spacer
accacgttacccgccatcaggttcggcccgct-	Protospacer
 ******..*************** *** ***

2. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009067 (Borreliella afzelii K78 plasmid lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-aattctatttcacttataaatattggatattt	Protospacer
  *** * *****.** ************** *

3. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_013516 (Streptobacillus moniliformis DSM 12112 plasmid pSMON01, complete sequence) position: , mismatch: 6, identity: 0.812

ttattgttttcatttttaaatattggatatat---	CRISPR spacer
ttattattttcatttttaagtat---gtatattcg	Protospacer
*****.*************.***   .*****

4. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027399 (Streptobacillus moniliformis strain FDAARGOS_310 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

ttattgttttcatttttaaatattggatatat---	CRISPR spacer
ttattattttcatttttaagtat---gtatattcg	Protospacer
*****.*************.***   .*****

5. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_017237 (Borreliella afzelii PKo plasmid lp38, complete sequence) position: , mismatch: 6, identity: 0.812

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-aattctatttcacttataaatattggatattt	Protospacer
  *** * *****.** ************** *

6. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014675 (Kozakia baliensis strain DSM 14400 plasmid pKB14400_1, complete sequence) position: , mismatch: 6, identity: 0.812

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
accacgttgcccgccatcaggttcggccccgc	Protospacer
 ******.***************** *  * *

7. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 6, identity: 0.812

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
ttcagtgcgcccgccatcaggctcgccagcac	Protospacer
*.**   **************.******** *

8. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 6, identity: 0.812

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
ttcagtgcgcccgccatcaggctcgccagcac	Protospacer
*.**   **************.******** *

9. spacer 2.1|949684|31|LS483453|PILER-CR matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

tgtcctttttcatgttgatgatgtcgccctc	CRISPR spacer
agttctttttcatgttcatgatgtcgaagta	Protospacer
 **.************ *********   *

10. spacer 3.4|959805|33|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 7, identity: 0.788

ctgggcgttgagtgccgcgaaatgcac---gaacgc	CRISPR spacer
ctgggcgttgagcgccgcgaactgcttctggaa---	Protospacer
************.******** *** .   ***

11. spacer 3.5|959867|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 7, identity: 0.781

gcctgcctgtaatcgatgatcaccagtgccga	CRISPR spacer
tcggtcctgtaatcgatgatctccagggccgg	Protospacer
 *   **************** **** ****.

12. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM583822 (Helicobacter pylori strain UM352 plasmid pUM352, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

13. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM583823 (Helicobacter pylori strain UM426 plasmid pUM426, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

14. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM583818 (Helicobacter pylori strain UM171 plasmid pUM171, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

15. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM583809 (Helicobacter pylori strain UM046 plasmid pUM046-2, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

16. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM583819 (Helicobacter pylori strain UM196 plasmid pUM196, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

17. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM583816 (Helicobacter pylori strain UM146 plasmid pUM146, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

18. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_017369 (Helicobacter pylori F30 plasmid pHPF30, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

19. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_005917 (Helicobacter pylori plasmid pAL202, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

20. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_015916 (Borreliella bissettii DN127 plasmid lp28-3, complete sequence) position: , mismatch: 7, identity: 0.781

-ttattgttttcatttttaaatattggatatat	CRISPR spacer
aatacta-tttcacttataaatattggatatct	Protospacer
  **.*. *****.** ************** *

21. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_010884 (Helicobacter pylori strain 69 plasmid pHP69, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

22. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_004950 (Helicobacter pylori plasmid pHel4 complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

23. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_001476 (Helicobacter pylori plasmid pHPM186, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

24. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_017383 (Helicobacter pylori v225d plasmid pHPv225d, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

25. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053257 (Helicobacter pylori A45 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

26. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_011334 (Helicobacter pylori G27 plasmid pHPG27, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

27. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_011499 (Helicobacter pylori P12 plasmid HPP12, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

28. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_004845 (Helicobacter pylori plasmid pHPM8, complete sequence) position: , mismatch: 7, identity: 0.781

ttattgt-tttcatttttaaatattggatatat	CRISPR spacer
-tgtcgcattccatttttaaatattggctattt	Protospacer
 *.*.*. **.**************** *** *

29. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to MN693954 (Marine virus AFVG_250M569, complete genome) position: , mismatch: 7, identity: 0.781

ttattgttttcatttttaaatat-tggatatat	CRISPR spacer
ttattgttttcatttttatttatcctcattta-	Protospacer
******************  *** .  ** **

30. spacer 3.25|961088|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 7, identity: 0.781

tacctgccgctaccgcgctggactgc-gccgcc	CRISPR spacer
ggcccgccgctaccgcgcgggactgctgctgg-	Protospacer
 .**.************* ******* **.*

31. spacer 3.25|961088|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 7, identity: 0.781

tacctgccgctaccgcgctggac-tgcgccgcc	CRISPR spacer
tacctgccgcaacagcgctggacgcgcgtggg-	Protospacer
********** ** ********* .***. *

32. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

33. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

34. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

35. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

36. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

37. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

38. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

39. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

40. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

41. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

42. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

43. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

44. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

45. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

46. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

47. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

48. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

49. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

50. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

51. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

52. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

53. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

54. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgacgccccagg	Protospacer
****.***** ************   ..****

55. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

56. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

57. spacer 3.30|961394|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccagatcgcgcaaatcgctgcgagtattcagg	CRISPR spacer
ccaggtcgcggaaatcgctgcgatgccccagg	Protospacer
****.***** ************   ..****

58. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041350 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence) position: , mismatch: 7, identity: 0.781

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
accacgttacccgccatcaggttcggccccgc	Protospacer
 ******..**************** *  * *

59. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 7, identity: 0.781

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgc	Protospacer
** * ..*************** * ***** *

60. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 7, identity: 0.781

tccacgt---cgcccgccatcaggttcgccagctc	CRISPR spacer
---aggtgcccgcccgcgatcaggtacgccagcgc	Protospacer
   * **   ******* ******* ******* *

61. spacer 2.2|949745|31|LS483453|PILER-CR matches to MH629685 (Synechococcus virus S-PRM1, complete genome) position: , mismatch: 8, identity: 0.742

ccactaacatttttggagttggctcaacagg	CRISPR spacer
ccactaacacttttggagttggtgtaggaac	Protospacer
*********.************. .*. *.

62. spacer 2.3|949683|32|LS483453|CRISPRCasFinder,CRT matches to NZ_CP020810 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgtcctttttcatgttgatgatgtcgccctc	CRISPR spacer
aagttctttttcatgttcatgatgtcgaagta	Protospacer
  **.************ *********   *

63. spacer 2.4|949744|32|LS483453|CRISPRCasFinder,CRT matches to MH629685 (Synechococcus virus S-PRM1, complete genome) position: , mismatch: 8, identity: 0.75

gccactaacatttttggagttggctcaacagg	CRISPR spacer
gccactaacacttttggagttggtgtaggaac	Protospacer
**********.************. .*. *.

64. spacer 2.5|949805|32|LS483453|CRISPRCasFinder,CRT matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 8, identity: 0.75

gtcacgaggtctgacgcggatgtgatg--agtta	CRISPR spacer
tcggcgaggtctgccgcgaatgtgatggcagt--	Protospacer
 . .********* ****.********  ***

65. spacer 3.5|959867|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 8, identity: 0.75

gcctgcctgtaatcgatgatcaccagtgccga	CRISPR spacer
acctgcctgtgatcgatgatcgcctgcccggc	Protospacer
.*********.**********.** *. * *

66. spacer 3.6|959928|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043058 (Dolichospermum sp. UHCC 0315A plasmid pUHCC0315b, complete sequence) position: , mismatch: 8, identity: 0.75

cggaggcgcgttacatcttccgctttgtcgct	CRISPR spacer
gtggtgagcgttacagcttccactttgtcgat	Protospacer
  *. * ******** *****.******** *

67. spacer 3.10|960172|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.75

gcgaaaattgcaggaatctacgccaacggatt	CRISPR spacer
ggtaaaattgcagacatctacgccaactgcgg	Protospacer
*  **********. ************ *

68. spacer 3.12|960294|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 8, identity: 0.75

caggcgatgattgcgggcgcgctgcaagcggt	CRISPR spacer
tcggcgatgattgcgggcacggtgcttgccat	Protospacer
. ****************.** ***  ** .*

69. spacer 3.14|960417|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

tataattggcgtccatatatctggatatttac	CRISPR spacer
attatctttcgtctaaatatctggatatttac	Protospacer
  ** .*  ****.* ****************

70. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
ttattgttttcatttataactattcccttcaa	Protospacer
*************** *** ****   * .*

71. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
ttattgttttcatttataactattcccttcaa	Protospacer
*************** *** ****   * .*

72. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to KJ183191 (Podovirus Lau218 strain Abe, complete genome) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
ttattgttttcatttttagttattcctctttt	Protospacer
******************. ****   . * *

73. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to KJ183191 (Podovirus Lau218 strain Abe, complete genome) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
gtattgttttcatttttagttatttcctcttt	Protospacer
 *****************. ****   * * *

74. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to KJ183193 (Podovirus Lau218 strain TahiMoana, complete genome) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
ttattgttttcatttttagttattcctctttt	Protospacer
******************. ****   . * *

75. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to KJ183193 (Podovirus Lau218 strain TahiMoana, complete genome) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
gtattgttttcatttttagttatttcctcttt	Protospacer
 *****************. ****   * * *

76. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to KJ183192 (Podovirus Lau218 strain KiloMoana, complete genome) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
ttattgttttcatttttagttattcctctttt	Protospacer
******************. ****   . * *

77. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to KJ183192 (Podovirus Lau218 strain KiloMoana, complete genome) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
gtattgttttcatttttagttatttcctcttt	Protospacer
 *****************. ****   * * *

78. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047087 (Bacillus paranthracis strain BC307 plasmid pCE2, complete sequence) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
ttattatttttatttttaaatatcaattaaag	Protospacer
*****.****.************... ** *

79. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021506 (Bacillus amyloliquefaciens strain SRCM101267 plasmid pBA1267-1 sequence) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
ttgttgttttcatttttaaaaatcaggttgaa	Protospacer
**.***************** **..*.*  *

80. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031559 (Helicobacter pylori strain GD63 plasmid pHPGD63, complete sequence) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
tgtctcattccatttttaaatattggctattt	Protospacer
*  .*  **.**************** *** *

81. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to CP041752 (Bacillus paranthracis strain NCCP 14796 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
ttattatttttatttttaaatatcaattaaag	Protospacer
*****.****.************... ** *

82. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033935 (Chryseobacterium balustinum strain KC_1863 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
cttttcaatttatttttaaaaattggatatac	Protospacer
.* **   **.********* **********.

83. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to GQ478087 (Enterococcus phage phiFL3B, complete genome) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
tgattattttcctttttaaatattgctgtaat	Protospacer
* ***.***** *************     **

84. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to LC168164 (Tenacibaculum phage pT24 DNA, complete genome) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
atattgtttccatttttaaatgttttttaatt	Protospacer
 ********.***********.**   **  *

85. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_013648 (Enterococcus phage phiFL3A, complete genome) position: , mismatch: 8, identity: 0.75

ttattgttttcatttttaaatattggatatat	CRISPR spacer
tgattattttcctttttaaatattgctgtaat	Protospacer
* ***.***** *************     **

86. spacer 3.21|960844|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022193 (Yangia pacifica strain YSBP01 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

acaccgcccctaaatcagcgcagcccgcacca	CRISPR spacer
gccgagatcctccatcagcgcagcccgcacca	Protospacer
.*   * .***  *******************

87. spacer 3.26|961149|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 8, identity: 0.75

tgtaatctctctatttataatctgtattgtac	CRISPR spacer
cttataccctatatttataatttgtattgtat	Protospacer
. **  *.** **********.*********.

88. spacer 3.26|961149|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045608 (Bacillus cereus strain SB1 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

tgtaatctctctatttataatctgtattgtac	CRISPR spacer
cttataccctatatttataatttgtattgtat	Protospacer
. **  *.** **********.*********.

89. spacer 3.26|961149|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to MT623546 (Acinetobacter phage Ab_121, complete genome) position: , mismatch: 8, identity: 0.75

tgtaatctctctatttataatctgtattgtac	CRISPR spacer
cagaaattttctctttataacctgtattgtac	Protospacer
.. ** .*.*** *******.***********

90. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
ccgaggtcgcccgctatcaggatcgccacggc	Protospacer
.* * *********.****** ******   *

91. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

92. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

93. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

94. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tcgagaccgcccgccatcaggtgctccagcgt	Protospacer
** * ..*************** * ***** .

95. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tccacgtcggccgccatccggttgcgcgcctg	Protospacer
********* ******** ****   *. **

96. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to MN996301 (Ralstonia phage RpY1, complete genome) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tccacgtcggccgccatccggttgcgcgcctg	Protospacer
********* ******** ****   *. **

97. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_011273 (Mycobacterium phage Myrna, complete genome) position: , mismatch: 8, identity: 0.75

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
accacgtcgcctgccaccaggttcacgccgtc	Protospacer
 **********.****.*******.*    **

98. spacer 3.8|960050|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to MN694121 (Marine virus AFVG_250M768, complete genome) position: , mismatch: 9, identity: 0.719

aaatgtttacaccttcaaatacaggtgagaaa-----	CRISPR spacer
ttatgtttccatcttcaaatacagg-----aactccg	Protospacer
  ****** **.*************     **

99. spacer 3.12|960294|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

caggcgatgattgcgggcgcgctgcaagcggt	CRISPR spacer
aaggcgatgaaggcgggcgcgctggatttctt	Protospacer
 *********  ************ *  .  *

100. spacer 3.12|960294|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049160 (Caballeronia sp. SBC1 plasmid pSBC1_4, complete sequence) position: , mismatch: 9, identity: 0.719

caggcgatgattgcgggcgcgctgcaagcggt	CRISPR spacer
gcgtcgatgattgcgtgcgcgctgtaactgca	Protospacer
  * *********** ********.** .*

101. spacer 3.12|960294|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

caggcgatgattgcgggcgcgctgcaagcggt	CRISPR spacer
aaggcgatgaaggcgggcgcgctggatttctt	Protospacer
 *********  ************ *  .  *

102. spacer 3.12|960294|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040820 (Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence) position: , mismatch: 9, identity: 0.719

caggcgatgattgcgggcgcgctgcaagcggt	CRISPR spacer
cgggcgatgatcgcggtcgcgctgctttgcgc	Protospacer
*.*********.**** ********     *.

103. spacer 3.12|960294|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 9, identity: 0.719

caggcgatgattgcgggcgcgct-gcaagcggt	CRISPR spacer
caggcggtgatcgcgggcgcgctcaccaataa-	Protospacer
******.****.*********** .* *....

104. spacer 3.12|960294|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to JN408461 (Mycobacterium phage Trixie, complete genome) position: , mismatch: 9, identity: 0.719

caggcgatgattgcgggcgcgctgcaagcggt	CRISPR spacer
tcggcgatgatggcgggcgcgttgccaaccac	Protospacer
. ********* *********.*** *.* ..

105. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to MT774408 (CrAssphage cr130_1, complete genome) position: , mismatch: 9, identity: 0.719

ttattgttttcatttttaaatattggatatat	CRISPR spacer
acctatccatcatttttaaatattgtatatat	Protospacer
 . *  .. **************** ******

106. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttattgttttcatttttaaatattggatatat	CRISPR spacer
ttattgttttcatttataactattcccttcca	Protospacer
*************** *** ****   * .

107. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 9, identity: 0.719

ttattgttttcatttttaaatattggatatat	CRISPR spacer
ttattgttttcatttataactattcccttcca	Protospacer
*************** *** ****   * .

108. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT670852 (Candidatus Erwinia haradaeae strain ErCipseudotaxifoliae isolate 3056 plasmid pl1) position: , mismatch: 9, identity: 0.719

ttattgttttcatttttaaatattggatatat	CRISPR spacer
tttaaattttcatttttaaatgttagataata	Protospacer
**   .***************.**.****

109. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR217726 (Candidatus Erwinia haradaeae strain ErCipseudotaxifoliae isolate 3056 plasmid pBioThi) position: , mismatch: 9, identity: 0.719

ttattgttttcatttttaaatattggatatat	CRISPR spacer
tttaaattttcatttttaaatgttagataata	Protospacer
**   .***************.**.****

110. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to AP014106 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C34-MedDCM-OCT-S43-C23, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ttattgttttcatttttaaatattggatatat	CRISPR spacer
atattatttttatttttaaatattataaagta	Protospacer
 ****.****.*************. * *

111. spacer 3.17|960600|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to AP014104 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C34-MedDCM-OCT-S23-C43, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

ttattgttttcatttttaaatattggatatat	CRISPR spacer
atattatttttatttttaaatattataaagta	Protospacer
 ****.****.*************. * *

112. spacer 3.20|960783|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 9, identity: 0.719

catttgtaggagcgattgttgtaggacagtgt	CRISPR spacer
gttttgtaggagtgattattgtaggattttca	Protospacer
  **********.****.********.  *

113. spacer 3.20|960783|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.719

catttgtaggagcgattgttgtaggacagtgt	CRISPR spacer
gttttgtaggagtgattattgtaggattttca	Protospacer
  **********.****.********.  *

114. spacer 3.26|961149|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to MK170160 (Acinetobacter phage TAC1, complete genome) position: , mismatch: 9, identity: 0.719

tgtaatctctctatttataatctgtattgtac	CRISPR spacer
ctgaagtcttctctttataacctgtattgtac	Protospacer
.  ** ...*** *******.***********

115. spacer 3.28|961272|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044991 (Deinococcus sp. AJ005 plasmid p115k, complete sequence) position: , mismatch: 9, identity: 0.719

gtgatcgagtattgctcgttgtcggcgtgggc	CRISPR spacer
gtgatcccgtattgctcgttgtcctgccggat	Protospacer
******  ***************    .**..

116. spacer 3.28|961272|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

gtgatcgagtattgctcgttgtcggcgtgggc	CRISPR spacer
gctcgcgcgtattgctcgtcgtcggcgttcgt	Protospacer
*.   ** ***********.********  *.

117. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
tccacgtcgcgcgccatcagggtcattgacca	Protospacer
********** ********** **.....*.

118. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
agcccggcgcccgccatcaggctcgccccggc	Protospacer
  * ** **************.*****    *

119. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015040 (Rhodovulum sp. P5 plasmid pRGUI01, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
gccacctcgcccgcgatcaggttcatcgacgg	Protospacer
 **** ******** *********..*..*

120. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
acatcatcgcccgcgatgaggttcgccagaag	Protospacer
 *  *.******** ** ***********

121. spacer 3.31|961455|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 9, identity: 0.719

tccacgtcgcccgccatcaggttcgccagctc	CRISPR spacer
gcgatatcgcccgccaccagggtcgccagact	Protospacer
 * *..**********.**** ******* ..

122. spacer 2.3|949683|32|LS483453|CRISPRCasFinder,CRT matches to MH319749 (Marine virus AG-345-F15 Ga0172271_11 genomic sequence) position: , mismatch: 10, identity: 0.688

ttgtcctttttcatgttgatgatgtcgccctc	CRISPR spacer
ttttactttttcatgttgatgattaagaggat	Protospacer
** * ******************   *    .

123. spacer 3.16|960539|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041045 (Paracoccus sp. AK26 plasmid pAK1, complete sequence) position: , mismatch: 10, identity: 0.688

tcgtcacgcgacatgctggacagtgtgtgtaa	CRISPR spacer
gccgcacgcgagatgctggacagggtgcagct	Protospacer
 *  ******* *********** ***..

124. spacer 3.18|960661|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009059 (Borreliella afzelii K78 plasmid lp54, complete sequence) position: , mismatch: 10, identity: 0.688

aatttgctccggaaatagataaagcgcagaaa	CRISPR spacer
tatttgctccgaaaataaataaagatgtttta	Protospacer
 **********.*****.******       *

125. spacer 3.18|960661|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009214 (Borreliella afzelii Tom3107 plasmid lp54, complete sequence) position: , mismatch: 10, identity: 0.688

aatttgctccggaaatagataaagcgcagaaa	CRISPR spacer
tatttgctccgaaaataaataaagatgtttta	Protospacer
 **********.*****.******       *

126. spacer 3.18|960661|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to NC_017241 (Borreliella afzelii PKo plasmid lp54, complete sequence) position: , mismatch: 10, identity: 0.688

aatttgctccggaaatagataaagcgcagaaa	CRISPR spacer
tatttgctccgaaaataaataaagatgtttta	Protospacer
 **********.*****.******       *

127. spacer 3.32|961516|32|LS483453|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

128. spacer 3.32|961516|32|LS483453|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

129. spacer 3.28|961272|32|LS483453|PILER-CR,CRISPRCasFinder,CRT matches to MH925092 (UNVERIFIED: Vibrio phage VpaJT_1, complete genome) position: , mismatch: 11, identity: 0.656

gtgatcgagtattgctcgttgtcggcgtgggc	CRISPR spacer
ctgatcgagtattccgcgttgtcgcgcccatt	Protospacer
 ************ * ********   . . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

475554 : 532422

Enterobacteria_phage(14.29%)

tRNA,integrase,protease,transposase

attL 467964:467979|attR 513047:513062

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
467964:467979	attL	NA	NA	NA	NA
SQH78916.1\|475554_475956_+\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH78917.1\|476126_476810_+\|integrase	integrase	Q6H9S3	Enterobacteria_phage	2.9e-17	33.9
SQH78918.1\|477520_477742_-	lipoprotein	NA	NA	NA	NA
SQH78919.1\|477978_481092_-	acriflavin resistance protein F	NA	NA	NA	NA
SQH78920.1\|481103_482261_-	acriflavin resistance protein E	NA	NA	NA	NA
SQH78921.1\|482673_483345_+	DNA-binding transcriptional regulator EnvR	NA	NA	NA	NA
SQH78922.1\|483347_485447_-	histidine kinase	G3MA91	Bacillus_virus	1.4e-22	33.9
SQH78923.1\|485597_485762_-	protein yhdU	NA	NA	NA	NA
SQH78924.1\|485844_486729_-	methyltransferase	M4QNN5	Ostreococcus_lucimarinus_virus	1.3e-25	32.8
SQH78925.1\|486814_487111_-	Fis DNA-binding protein	NA	NA	NA	NA
SQH78926.1\|487136_488102_-\|tRNA	tRNA-dihydrouridine synthase B	NA	NA	NA	NA
SQH78927.1\|488762_489644_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
SQH78928.1\|489655_491107_-	sodium/pantothenate symporter	NA	NA	NA	NA
SQH78929.1\|491096_491339_-	Membrane protein	NA	NA	NA	NA
SQH78930.1\|491447_492797_-	biotin carboxylase	NA	NA	NA	NA
SQH78931.1\|492807_493278_-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	NA	NA	NA	NA
SQH78932.1\|493670_494270_-	Membrane protein YedZ	NA	NA	NA	NA
SQH78933.1\|494270_495275_-	reductase	NA	NA	NA	NA
SQH78934.1\|495387_496362_-	oxidoreductase	NA	NA	NA	NA
SQH78935.1\|496565_498506_+	lipoprotein	NA	NA	NA	NA
SQH78936.1\|498813_499857_+	rod shape-determining protein mreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
SQH78937.1\|499921_500974_+	rod shape-determining protein	NA	NA	NA	NA
SQH78938.1\|500973_501465_+	rod shape-determining protein MreD	NA	NA	NA	NA
SQH78939.1\|501473_502067_+	Septum formation protein Maf	NA	NA	NA	NA
SQH78940.1\|502056_503526_+	ribonuclease G	NA	NA	NA	NA
SQH78941.1\|503632_507433_+	Uncharacterized protein involved in outer membrane biogenesis	NA	NA	NA	NA
SQH78942.1\|507577_509023_+\|protease	protease TldD	NA	NA	NA	NA
SQH78943.1\|509145_510075_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQH78944.1\|510256_510460_+	electron transfer flavoprotein FixA	NA	NA	NA	NA
SQH78945.1\|510467_511400_+	Fusaric acid resistance protein fusE	NA	NA	NA	NA
SQH78946.1\|511405_513373_+	fusaric acid resistance protein FusB/ fusaricacid resistance protein FusC	NA	NA	NA	NA
513047:513062	attR	NA	NA	NA	NA
SQH78947.1\|513544_513817_+	putative ribonuclease inhibitor	NA	NA	NA	NA
SQH78948.1\|513876_514143_-	membrane protein	NA	NA	NA	NA
SQH78949.1\|514246_514510_-	membrane protein	NA	NA	NA	NA
SQH78950.1\|514874_515345_-	arginine repressor	NA	NA	NA	NA
SQH78951.1\|515759_516698_+	malate dehydrogenase	NA	NA	NA	NA
SQH78952.1\|516817_517447_+	GntR family transcriptional regulator	NA	NA	NA	NA
SQH78953.1\|517433_518099_+	LysR family transcriptional regulator	NA	NA	NA	NA
SQH78954.1\|518309_519578_+	possible membrane transport protein	Q6A201	Oenococcus_phage	3.3e-59	33.0
SQH78955.1\|519610_520510_+	tartrate dehydratase subunit alpha	NA	NA	NA	NA
SQH78956.1\|520509_521127_+	L(+)-tartrate dehydratase subunit beta	NA	NA	NA	NA
SQH78957.1\|521283_521529_+	oxaloacetate decarboxylase subunit gamma	NA	NA	NA	NA
SQH78958.1\|521544_523323_+	oxaloacetate decarboxylase alpha subunit	NA	NA	NA	NA
SQH78959.1\|523338_524640_+	oxaloacetate decarboxylase subunit beta	NA	NA	NA	NA
SQH78960.1\|524692_525391_+	membrane protein	NA	NA	NA	NA
SQH78961.1\|525424_526495_-\|protease	serine endoprotease	NA	NA	NA	NA
SQH78962.1\|526587_527955_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	2.7e-22	26.3
SQH78963.1\|528111_528510_-	cytochrome d ubiquinol oxidase subunit III	NA	NA	NA	NA
SQH78964.1\|528702_529827_+	ATP/GTP-binding protein	NA	NA	NA	NA
SQH78965.1\|530128_530557_+	50S ribosomal protein L13	NA	NA	NA	NA
SQH78966.1\|530572_530965_+	30S ribosomal subunit protein S9	NA	NA	NA	NA
SQH78967.1\|531277_531916_+	stringent starvation protein A	NA	NA	NA	NA
SQH78968.1\|531921_532422_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.5e-26	55.8

DBSCAN-SWA_2

1654965 : 1664136

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH79970.1\|1654965_1655913_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
SQH79971.1\|1655896_1656628_+	putative permease transmembrane component	NA	NA	NA	NA
SQH79972.1\|1656608_1656716_-	membrane protein	NA	NA	NA	NA
SQH79973.1\|1656775_1657507_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
SQH79974.1\|1657729_1659415_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
SQH79975.1\|1659411_1660131_+	two-component system response regulator	NA	NA	NA	NA
SQH79976.1\|1660177_1660645_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
SQH79977.1\|1660701_1661232_-	lipoprotein	NA	NA	NA	NA
SQH79978.1\|1661403_1661862_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
SQH79979.1\|1662102_1664136_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	4.7e-55	26.9

DBSCAN-SWA_3

1731519 : 1737825

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH80033.1\|1731519_1732923_+	Colanic acid biosynthesis protein wcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
SQH80034.1\|1733100_1733994_+	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
SQH80035.1\|1734370_1735456_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
SQH80036.1\|1735455_1736355_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.3e-30	36.3
SQH80037.1\|1736402_1737281_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	3.9e-107	64.1
SQH80038.1\|1737285_1737825_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.9e-52	58.5

DBSCAN-SWA_4

1937587 : 1990730

Enterobacteria_phage(21.43%)

integrase,protease,transposase,terminase

attL 1932032:1932046|attR 1942294:1942308

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1932032:1932046	attL	NA	NA	NA	NA
SQH80237.1\|1937587_1937818_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
SQH80238.1\|1937955_1938330_+	Copper resistance protein CopC	NA	NA	NA	NA
SQH80239.1\|1938330_1939206_+	membrane protein	NA	NA	NA	NA
SQH80240.1\|1939222_1939576_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
SQH80241.1\|1939939_1940209_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	2.7e-11	47.8
SQH80242.1\|1940223_1940793_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.0e-44	53.4
SQH80243.1\|1941122_1941824_+	lytic enzyme	Q8HA86	Salmonella_phage	4.0e-38	93.9
SQH80244.1\|1941820_1942354_+	exported phage protein	A0A291LBG9	Klebsiella_phage	3.2e-11	43.0
1942294:1942308	attR	NA	NA	NA	NA
SQH80245.1\|1942610_1942778_-	lytic enzyme	NA	NA	NA	NA
SQH80246.1\|1943085_1943349_+\|terminase	terminase	Q9EYD0	Enterobacteria_phage	1.3e-18	58.6
SQH80247.1\|1945952_1946075_+	Uncharacterised protein	NA	NA	NA	NA
SQH80248.1\|1946523_1947138_-	disulfide bond formation protein	NA	NA	NA	NA
SQH80249.1\|1947147_1947306_-	membrane protein	NA	NA	NA	NA
SQH80250.1\|1947438_1948353_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA
SQH80251.1\|1949143_1949668_-	fimbriae usher protein	NA	NA	NA	NA
SQH80252.1\|1949684_1950023_+	putative product	I6RSM4	Salmonella_phage	8.1e-21	84.7
SQH80253.1\|1950780_1951941_+\|transposase	transposase	A0A218MNI5	uncultured_virus	9.3e-40	49.1
SQH80254.1\|1953078_1953498_+	acetyltransferase	NA	NA	NA	NA
SQH80255.1\|1953869_1954346_-	Uncharacterised protein	NA	NA	NA	NA
SQH80256.1\|1954675_1955071_-	protein ycgX	C6ZCX4	Enterobacteria_phage	8.3e-17	33.6
SQH80257.1\|1955754_1956477_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
SQH80258.1\|1956762_1956927_+	membrane protein	NA	NA	NA	NA
SQH80259.1\|1956899_1957133_+	Uncharacterised protein	NA	NA	NA	NA
SQH80260.1\|1957150_1957801_+	Serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	1.1e-58	51.4
SQH80261.1\|1957819_1958011_-	putative secreted protein	NA	NA	NA	NA
SQH80262.1\|1958121_1958361_-	conserved domain protein	NA	NA	NA	NA
SQH80263.1\|1958475_1960017_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
SQH80264.1\|1959992_1962626_-	mce-related protein	NA	NA	NA	NA
SQH80265.1\|1962594_1963878_-	Paraquat-inducible protein A	NA	NA	NA	NA
SQH80266.1\|1963934_1964504_+	GAF domain-containing protein	NA	NA	NA	NA
SQH80267.1\|1964601_1965288_+	ProP effector	NA	NA	NA	NA
SQH80268.1\|1965307_1967356_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
SQH80269.1\|1967549_1968431_+	heat shock protein	NA	NA	NA	NA
SQH80270.1\|1968478_1969852_-	export protein	NA	NA	NA	NA
SQH80271.1\|1969916_1970024_+	Uncharacterised protein	NA	NA	NA	NA
SQH80272.1\|1970027_1970819_+	transcriptional regulator KdgR	NA	NA	NA	NA
SQH80273.1\|1971030_1971270_-	putative exported protein	NA	NA	NA	NA
SQH80274.1\|1971427_1971571_+	Putative inner membrane protein	NA	NA	NA	NA
SQH80275.1\|1971641_1971929_+	putative exported protein	NA	NA	NA	NA
SQH80276.1\|1973162_1974908_+	penicillin-binding protein	NA	NA	NA	NA
SQH80277.1\|1974973_1975783_+	23S rRNA methyltransferase A	NA	NA	NA	NA
SQH80278.1\|1975779_1976346_-	membrane protein YebN	NA	NA	NA	NA
SQH80279.1\|1976755_1977214_-	membrane protein	NA	NA	NA	NA
SQH80280.1\|1977272_1978124_-	PTS mannose transporter subunit IID	NA	NA	NA	NA
SQH80281.1\|1978136_1978937_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA
SQH80282.1\|1978989_1979958_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA
SQH80283.1\|1980430_1981990_+	Magnesium and cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	9.5e-40	44.4
SQH80284.1\|1982011_1983613_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA
SQH80285.1\|1983750_1985115_-	L-serine ammonia-lyase	NA	NA	NA	NA
SQH80286.1\|1985378_1985957_-	putative nudix hydrolase YeaB	NA	NA	NA	NA
SQH80287.1\|1985960_1987325_-	para-aminobenzoate synthase component I	A0A0B5J984	Pandoravirus	1.5e-44	35.0
SQH80288.1\|1987405_1987585_+	conserved domain protein	NA	NA	NA	NA
SQH80289.1\|1987590_1987935_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA
SQH80290.1\|1988066_1989977_+	ATP-dependent helicase	A0A127AW80	Bacillus_phage	4.5e-92	32.7
SQH80291.1\|1990034_1990730_+\|protease	metal-dependent protease-like protein, putative molecular chaperone	NA	NA	NA	NA

DBSCAN-SWA_5

2732047 : 2817336

Salmonella_phage(27.27%)

holin,capsid,terminase,tRNA,protease,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH81008.1\|2732047_2732377_+\|tRNA	tRNA 2-thiouridine synthesizing protein E	NA	NA	NA	NA
SQH81009.1\|2732373_2732655_-	acylphosphatase	NA	NA	NA	NA
SQH81010.1\|2732703_2733492_-	transcriptional regulator	NA	NA	NA	NA
SQH81011.1\|2733508_2734057_-	kinase inhibitor	NA	NA	NA	NA
SQH81012.1\|2734271_2735483_+	LSU m5C1962 methyl transferase RlmI	NA	NA	NA	NA
SQH81013.1\|2735540_2735858_+	hemimethylated DNA binding protein YccV	NA	NA	NA	NA
SQH81014.1\|2735902_2736316_-	Succinyl-CoA synthetase alpha subunit-related enzyme	NA	NA	NA	NA
SQH81015.1\|2736489_2737152_+	UPF0319 protein YccT precursor	NA	NA	NA	NA
SQH81016.1\|2737246_2737705_+	methylglyoxal synthase	NA	NA	NA	NA
SQH81017.1\|2737740_2739795_-	helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
SQH81018.1\|2739918_2740365_+	Inner membrane protein YccF	NA	NA	NA	NA
SQH81019.1\|2740383_2742537_+	Putative efflux (PET) family inner membrane protein YccS	NA	NA	NA	NA
SQH81020.1\|2742523_2743129_-	DNA transformation protein TfoX	NA	NA	NA	NA
SQH81021.1\|2743345_2743855_+	cell division inhibitor	NA	NA	NA	NA
SQH81022.1\|2744211_2745264_+	outer membrane protein A	NA	NA	NA	NA
SQH81023.1\|2745335_2745788_-	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA
SQH81024.1\|2745973_2747734_+\|protease	protease	NA	NA	NA	NA
SQH81025.1\|2747802_2748321_+	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	NA	NA	NA	NA
SQH81026.1\|2748843_2749407_-	lipoprotein	NA	NA	NA	NA
SQH81027.1\|2749403_2751044_-	paraquat-inducible protein B	NA	NA	NA	NA
SQH81028.1\|2751048_2752302_-	paraquat-inducible protein A	NA	NA	NA	NA
SQH81029.1\|2752316_2754224_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	5.4e-53	29.8
SQH81030.1\|2754236_2756345_-	23S rRNA (guanine-N-2-) -methyl transferase rlmL	NA	NA	NA	NA
SQH81031.1\|2756443_2757553_+	Flavodoxin reductases (ferredoxin-NADPHreductases) family 1	NA	NA	NA	NA
SQH81032.1\|2757549_2758092_-	Z-ring-associated protein C	NA	NA	NA	NA
SQH81033.1\|2758257_2759268_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
SQH81034.1\|2759475_2762088_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
SQH81035.1\|2762594_2763020_+	Gifsy-1 prophage protein	NA	NA	NA	NA
SQH81036.1\|2763016_2764237_-\|transposase	transposase	NA	NA	NA	NA
SQH81037.1\|2764887_2765610_+	type III secretion protein SopE	NA	NA	NA	NA
SQH81038.1\|2766377_2767202_-\|tail	phage tail assembly-like protein	A0A0M4QWS3	Salmonella_phage	2.8e-139	88.7
SQH81039.1\|2769627_2769870_-	Uncharacterised protein	NA	NA	NA	NA
SQH81040.1\|2769908_2773259_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	69.3
SQH81041.1\|2773330_2773873_-\|tail	Gifsy-2 prophage probable tail assembly protein	K7PH50	Enterobacteria_phage	1.4e-46	63.1
SQH81042.1\|2773932_2774670_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	5.2e-113	75.6
SQH81043.1\|2774679_2775375_-\|tail	tail protein	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
SQH81044.1\|2775464_2775998_+	superoxide dismutase	Q9MC02	Salmonella_phage	1.8e-46	54.0
SQH81045.1\|2776087_2776612_-	attachment/invasion protein	A0A1B0VBR9	Salmonella_phage	1.8e-19	35.3
SQH81046.1\|2776710_2777043_-\|tail	tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
SQH81047.1\|2777039_2780126_-	gifsy-1 prophage VmtH	A0A291AWX1	Escherichia_phage	2.6e-262	62.0
SQH81048.1\|2780106_2780358_-\|tail	tail protein	A5LH37	Enterobacteria_phage	2.1e-13	45.2
SQH81049.1\|2780432_2780831_-\|tail	minor tail protein	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
SQH81050.1\|2780876_2781626_-\|tail	major tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
SQH81051.1\|2781637_2782039_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	2.0e-42	60.9
SQH81052.1\|2782035_2782602_-\|tail	prophage minor tail protein Z	Q9G063	Phage_Gifsy-2	2.1e-13	95.7
SQH81053.1\|2782582_2782849_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.9e-13	46.2
SQH81054.1\|2782874_2783198_-	recombinase RecA	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
SQH81055.1\|2783288_2785340_-\|protease	ATP dependent Clp protease	A0A291AWT6	Escherichia_phage	8.1e-265	69.4
SQH81056.1\|2785290_2786838_-\|capsid	capsid protein	A0A291AWU2	Escherichia_phage	1.1e-176	63.8
SQH81057.1\|2786834_2787041_-	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
SQH81058.1\|2787037_2789173_-\|terminase	phage terminase large subunit	A5LH27	Enterobacteria_phage	6.9e-291	72.6
SQH81059.1\|2789132_2789666_-	Gifsy-2 prophage protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
SQH81060.1\|2789876_2790371_-	Phage outer membrane lytic protein Rz, Endopeptidase	Q56118	Enterobacteria_phage	2.2e-59	77.3
SQH81061.1\|2790372_2790471_-	Phage protein	NA	NA	NA	NA
SQH81062.1\|2790678_2791218_-	Phage endolysin R	K7PLY1	Enterobacteria_phage	2.2e-76	72.4
SQH81063.1\|2791195_2791504_-\|holin	phage-holin analog protein	NA	NA	NA	NA
SQH81064.1\|2792393_2793191_-	molecular chaperone	A0A0M4S661	Salmonella_phage	4.0e-151	99.6
SQH81065.1\|2793323_2793935_-	bacteriophage Lambda NinG protein	A0A0M4RU10	Salmonella_phage	3.0e-90	97.5
SQH81066.1\|2793937_2794144_-	Phage protein	S4TNP0	Salmonella_phage	4.6e-35	98.5
SQH81067.1\|2794143_2794746_-	bacteriophage protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
SQH81068.1\|2794808_2795114_-	putative bacteriophage cohesive ends	NA	NA	NA	NA
SQH81069.1\|2795745_2797725_-	alkyl/aryl-sulfatase BDS1	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
SQH81070.1\|2798121_2799252_+	Bacteriophytochrome cph2	NA	NA	NA	NA
SQH81071.1\|2799538_2799934_-	DNA-binding protein	A0A088CBK9	Shigella_phage	9.8e-18	38.8
SQH81072.1\|2799946_2800408_-	Replication protein 14	A0A0U2JGJ0	Escherichia_phage	7.8e-67	74.8
SQH81073.1\|2800400_2801408_-	replication protein	A0A0U2RT81	Escherichia_phage	1.7e-122	67.0
SQH81074.1\|2801454_2801949_-	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA
SQH81075.1\|2801935_2802190_-	CRO	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
SQH81076.1\|2802286_2802712_+	transcriptional regulator	K7PH71	Enterobacterial_phage	1.2e-13	56.3
SQH81077.1\|2803021_2803177_+	Protein of uncharacterised function (DUF1391)	M4QQ57	Salicola_phage	8.0e-08	55.3
SQH81078.1\|2803558_2803843_+	DNA breaking-rejoining protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
SQH81079.1\|2803917_2804253_+	Uncharacterised protein	NA	NA	NA	NA
SQH81080.1\|2804390_2807558_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	67.2
SQH81081.1\|2807568_2808678_+	Gifsy-2 prophage RecT	H6WRX0	Salmonella_phage	7.1e-207	100.0
SQH81082.1\|2808720_2808960_+	putative bacteriophage protein	S4TR31	Salmonella_phage	2.0e-37	100.0
SQH81083.1\|2809000_2809249_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
SQH81084.1\|2809293_2810586_+	Integrase	S4TSP2	Salmonella_phage	3.4e-253	100.0
SQH81085.1\|2810780_2811983_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
SQH81086.1\|2812063_2813497_-	amino acid:proton symporter	NA	NA	NA	NA
SQH81087.1\|2813742_2814957_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
SQH81088.1\|2815273_2815735_+	DNA-binding protein	NA	NA	NA	NA
SQH81089.1\|2815935_2817336_+\|tRNA	asparaginyl-tRNA synthetase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1

DBSCAN-SWA_6

3294578 : 3353771

Bacillus_phage(25.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH81520.1\|3294578_3295496_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
SQH81521.1\|3295492_3295945_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
SQH81522.1\|3295945_3296362_-	copper efflux regulator	NA	NA	NA	NA
SQH81523.1\|3296471_3298973_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	1.5e-111	37.1
SQH81524.1\|3299126_3299954_+	Secreted protein	NA	NA	NA	NA
SQH81525.1\|3301035_3301515_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
SQH81526.1\|3301631_3303284_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
SQH81527.1\|3303456_3304677_+	fosmidomycin resistance protein	NA	NA	NA	NA
SQH81528.1\|3304891_3306568_+	transport protein	NA	NA	NA	NA
SQH81529.1\|3306690_3308040_-	inosine/guanosine kinase	NA	NA	NA	NA
SQH81530.1\|3308147_3309119_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	1.1e-14	27.4
SQH81531.1\|3309115_3310078_-	ferrochelatase	NA	NA	NA	NA
SQH81532.1\|3310306_3310951_-	adenylate kinase	NA	NA	NA	NA
SQH81533.1\|3311192_3313067_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.7e-115	36.9
SQH81534.1\|3313177_3313783_-	recombination protein RecR	NA	NA	NA	NA
SQH81535.1\|3313782_3314112_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQH81536.1\|3316199_3316751_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
SQH81537.1\|3316903_3317281_-	Inner membrane protein YbaN	NA	NA	NA	NA
SQH81538.1\|3317361_3317877_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
SQH81539.1\|3317890_3318058_+	Putative inner membrane protein	NA	NA	NA	NA
SQH81540.1\|3318127_3319051_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	7.3e-64	52.1
SQH81541.1\|3319092_3322455_-	integral membrane protein AefA	NA	NA	NA	NA
SQH81542.1\|3322573_3323227_-	potential acrAB operon repressor	NA	NA	NA	NA
SQH81543.1\|3323368_3324562_+	acriflavin resistance protein A	NA	NA	NA	NA
SQH81544.1\|3324584_3327734_+	acriflavin resistance protein B	NA	NA	NA	NA
SQH81545.1\|3328229_3328604_+	Hha toxicity attenuator	NA	NA	NA	NA
SQH81546.1\|3328631_3328850_+	hemolysin expression modulating protein	NA	NA	NA	NA
SQH81547.1\|3329028_3329580_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQH81548.1\|3329696_3330167_+	Putative inner membrane protein	NA	NA	NA	NA
SQH81549.1\|3330363_3330627_-	50S ribosomal protein L31	NA	NA	NA	NA
SQH81550.1\|3330851_3332402_+	Uncharacterized protein ylaB	NA	NA	NA	NA
SQH81551.1\|3332710_3333022_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
SQH81552.1\|3333054_3333624_-	lipoprotein	NA	NA	NA	NA
SQH81553.1\|3333838_3334699_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQH81554.1\|3334798_3336085_-	ammonium transporter	NA	NA	NA	NA
SQH81555.1\|3336116_3336455_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQH81556.1\|3336667_3338449_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	3.2e-39	26.7
SQH81557.1\|3338441_3340214_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
SQH81558.1\|3340254_3340713_-	transcriptional regulator	NA	NA	NA	NA
SQH81559.1\|3340825_3341881_+	lyase	NA	NA	NA	NA
SQH81560.1\|3341930_3342749_-	HMP-PP phosphatase	NA	NA	NA	NA
SQH81561.1\|3342849_3344550_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQH81562.1\|3344614_3345310_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.5e-87	68.0
SQH81563.1\|3345415_3345814_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
SQH81564.1\|3345917_3346292_-	competence protein ComEA	NA	NA	NA	NA
SQH81565.1\|3346441_3348313_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQH81566.1\|3348603_3348876_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
SQH81567.1\|3349084_3351439_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5
SQH81568.1\|3351624_3352896_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-131	56.5
SQH81569.1\|3353147_3353771_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483453

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection