CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483455	Salmonella enterica subsp. enterica strain NCTC9872 genome assembly, chromosome: 1	4 crisprs	PD-DExK,WYL,cas3,csa3,DEDDh,DinG	0	12	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483455_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483455_1

174398-174476

Orphan

Consensus_repeat	Method
TTGATATTAGCCTGGTGGTAATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483455_1

>merge|LS483455|1|174398-174476|CRISPRCasFinder
TTGATATTAGCCTGGTGGTAATGCCCGATGGCACTTCGCTTATAGGGCCTACCGCATTGATATCAGCCTGGTGGTAATG

>LS483455|1|1|174398-174476|CRISPRCasFinder
TTGATATTAGCCTGGTGGTAATG	CCCGATGGCACTTCGCTTATAGGGCCTACCGCA
TTGATATCAGCCTGGTGGTAATG

Protein	Signature genes	Signature genes Name	Protein_function
LS483455.1\|SQH82845.1\|172811_174350_+\|aldehyde-dehydrogenase-B	unknown	unknown	gnl\|CDD\|143434
LS483455.1\|SQH82852.1\|181463_182450_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270397
LS483455.1\|SQH82844.1\|171761_172643_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|224851
LS483455.1\|SQH82838.1\|162646_163795_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
LS483455.1\|SQH82853.1\|182461_183739_-\|dehydroascorbate-transporter	unknown	unknown	gnl\|CDD\|185020
LS483455.1\|SQH82840.1\|166407_167016_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|182405
LS483455.1\|SQH82841.1\|167114_168506_+\|L-seryl-tRNA(Ser)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
LS483455.1\|SQH82855.1\|184353_185286_-\|YiaX1	unknown	unknown	gnl\|CDD\|374399
LS483455.1\|SQH82848.1\|177762_178458_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|183459
LS483455.1\|SQH82851.1\|179963_181460_-\|L-xylulose/3-keto-L-gulonate-kinase	unknown	unknown	gnl\|CDD\|212666
LS483455.1\|SQH82849.1\|178451_179312_-\|L-xylulose-5-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|237308
LS483455.1\|SQH82854.1\|183741_184215_-\|2,3-diketo-L-gulonate-TRAP-transporter-permease	unknown	unknown	gnl\|CDD\|182129
LS483455.1\|SQH82843.1\|170538_171690_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|182118
LS483455.1\|SQH82846.1\|174579_176535_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|226063
LS483455.1\|SQH82850.1\|179316_179967_-\|3-keto-L-gulonate-6-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|183962
LS483455.1\|SQH82836.1\|161840_162050_+\|Putative-cytoplasmic-protein	unknown	unknown	unknown
LS483455.1\|SQH82837.1\|162059_162650_-\|mannitol-operon-repressor	unknown	unknown	gnl\|CDD\|236817
LS483455.1\|SQH82839.1\|164015_165932_-\|PTS-system-mannitol-specific-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|237905
LS483455.1\|SQH82847.1\|176798_177614_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227095
LS483455.1\|SQH82842.1\|168502_170353_+\|selenocysteinyl-tRNA-specific-translation-factor	unknown	unknown	gnl\|CDD\|182508

Protein	Function_ID	Function_description	E-value
LS483455.1\|SQH82845.1\|172811_174350_+\|aldehyde-dehydrogenase-B	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
LS483455.1\|SQH82852.1\|181463_182450_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270397	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the solute receptor protein YiaO of TRAP transport system. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.88867e-149
LS483455.1\|SQH82844.1\|171761_172643_-\|sugar-kinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.75455e-75
LS483455.1\|SQH82838.1\|162646_163795_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
LS483455.1\|SQH82853.1\|182461_183739_-\|dehydroascorbate-transporter	gnl\|CDD\|185020	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN.	0
LS483455.1\|SQH82840.1\|166407_167016_+\|glutathione-S-transferase	gnl\|CDD\|182405	PRK10357, PRK10357, putative glutathione S-transferase; Provisional.	2.71219e-154
LS483455.1\|SQH82841.1\|167114_168506_+\|L-seryl-tRNA(Ser)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
LS483455.1\|SQH82855.1\|184353_185286_-\|YiaX1	gnl\|CDD\|374399	pfam16154, DUF4862, Domain of unknown function (DUF4862). This family consists of uncharacterized proteins around 300 residues in length and is mainly found in various high GC Gram+ bacteria, but also in several pathogenic and non-pathogenic enterobacteria (Salmonella, E. coli). Distant homology analysis suggests this could be a branch of Xylose isomerase-like TIM barrel family, but this prediction is currently not confirmed by experiment.	1.87715e-118
LS483455.1\|SQH82848.1\|177762_178458_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|183459	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed.	6.13201e-177
LS483455.1\|SQH82851.1\|179963_181460_-\|L-xylulose/3-keto-L-gulonate-kinase	gnl\|CDD\|212666	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
LS483455.1\|SQH82849.1\|178451_179312_-\|L-xylulose-5-phosphate-3-epimerase	gnl\|CDD\|237308	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase.	0
LS483455.1\|SQH82854.1\|183741_184215_-\|2,3-diketo-L-gulonate-TRAP-transporter-permease	gnl\|CDD\|182129	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional.	1.23224e-98
LS483455.1\|SQH82843.1\|170538_171690_+\|alcohol-dehydrogenase	gnl\|CDD\|182118	PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional.	0
LS483455.1\|SQH82846.1\|174579_176535_-\|glycosyl-hydrolase	gnl\|CDD\|226063	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown].	0
LS483455.1\|SQH82850.1\|179316_179967_-\|3-keto-L-gulonate-6-phosphate-decarboxylase	gnl\|CDD\|183962	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD.	4.61819e-146
LS483455.1\|SQH82837.1\|162059_162650_-\|mannitol-operon-repressor	gnl\|CDD\|236817	PRK11001, mtlR, MltR family transcriptional regulator.	1.37879e-106
LS483455.1\|SQH82839.1\|164015_165932_-\|PTS-system-mannitol-specific-transporter-subunit-IIC	gnl\|CDD\|237905	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional.	0
LS483455.1\|SQH82847.1\|176798_177614_+\|transcriptional-regulator	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.11433e-21
LS483455.1\|SQH82842.1\|168502_170353_+\|selenocysteinyl-tRNA-specific-translation-factor	gnl\|CDD\|182508	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional.	0

>LS483455.1|SQH82845.1|172811_174350_+|aldehyde-dehydrogenase-B
MTNNPPSTRIQPGEYGYPLKLKARYDNFIGGDWVAPADGEYYQNLTPVTGQPLCEVASSGKKDIDLALDAAHKAKDKWAHTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEVIGDLLPPGVVNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNIFFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESIRSGNPLDSGTQMGAQVSHGQLETILNYIDIGKKEGADILTGGRRKELDGELKEGYYLEPTILFGKNNMRVFQEEIFGPVLAVTTFKTMEEALEIANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKPLGLF
>LS483455.1|SQH82844.1|171761_172643_-|sugar-kinase
MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKWQDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLLLVVENDANCAALGEMWRGAGQHYDNLVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMPVGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGGISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLDRS
>LS483455.1|SQH82843.1|170538_171690_+|alcohol-dehydrogenase
MAASTFFIPSVNVIGADSLKNAMNTMAEYGFRRTLIVTDTMLTKLGMAGDIQKALQERDIFSVIYDGTQPNPTTSNVAAGLKLLKENGCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEERHIKMAIVDKHVTPLLSVNDSSLMVGMPKSLTAATGMDALTHAIEAYVSVAATPITDACALKAVTMIAENLVVAVEEGSNVQAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAVLLPHVQVFNSQVAAARLRDCAAAMGVDVSDMSEAEGAQACVAAIRQLSQKVNIPAGLRELNVKEEDIPVLATNALKDACGLTNPIQATHDEIVEIYRAAM
>LS483455.1|SQH82842.1|168502_170353_+|selenocysteinyl-tRNA-specific-translation-factor
MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLQILQLTGNLQLTVALTKADRVDEARIGEVREEVLAALDNYGFADTVLFVTAANEGRGIAELRAHLQQLPARLHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRSLHAQNQPTDHAHAGQRIALNIAGDAEKEQLNRGDWLLSDAPVGEAFSRVIVSLALHAPLSQWQPLHIHHAASHVTGRVSLLEGGLAELIFDTPLWLADNDRLVLRDISARATLAGARVVTLKAPRRGKRKPDYLHWLSTLADAQDDSAALAIHLERGAVNLPDFGWARQLNPLGMRQLIEQHGFIQAGDNLLSAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMALPMEDEALVLMLIERMRDDGLIHSHHGWLHLPDHKAGFSDEQQAVWQKVEPLFGDEPWWVRDLAKETGTEEQLMRLVLRQAAQQGIITAIVKDRYYRNDRIVAFANMIRELDQERGSTCAADFRDRLNVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPQKE
>LS483455.1|SQH82841.1|167114_168506_+|L-seryl-tRNA(Ser)-selenium-transferase
MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVEEAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPLKRALRADKMTLAALEATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLVARYGDEFALEVKPCLSQIGSGSLPVDRLPSAAMTFTPHDGRGSRLEALAARWRTLPVPVIGRIYDGRLWLDMRCLEDESRFMEMMLK
>LS483455.1|SQH82840.1|166407_167016_+|glutathione-S-transferase
MKLIGSYTSPFVRKISILLLEKGITFEFINELPYEADNGVAQYNPLGKVPALVTEKGEYWFDSPIIAEYIELLDIAPAMLPRDPMAALKVRQLEALADGIMDAALVSVREQARPAAQQSETELLRQREKINRSLDMLESYLSDGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVSRPHLVKLVETLFQRESFARTEAPKA
>LS483455.1|SQH82839.1|164015_165932_-|PTS-system-mannitol-specific-transporter-subunit-IIC
MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLLPLLIGYTGGRLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGYCIKKFDSWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPAVEVLSKILAAGVNFMVAHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHEMGKSIFFLIEANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILNGGLVSPASPGSILAVLAMTPKGAYFANIAAIVAAMAVSFVVSAILLKTSKVKEEDDIEAATRRMQDMKAESKGASPLAAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHNTNEEKVRDHLKDSFEEGDNNLFKLGAENIFLGRKAANKEEAIRFAGEQLVKGGYVEPEYVEAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGKKA
>LS483455.1|SQH82838.1|162646_163795_-|mannitol-1-phosphate-5-dehydrogenase
MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGENEQVDTVSGVNAVSSIGDDVVDLIAHVDLITTAVGPVVLERIAPAIAKGLVKRKAQGVDAPLNIIACENMVRGTTQLKGHVMNALADGDKAWVEQHVGFVDSAVDRIVPPSASATHDPLEVTVETFSEWIVDKTQFKGALPTIPGMELTDNLMAFVERKLFTLNTGHAITAYLGKLAGHQTIRDAILDESIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQKILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYGLPHVNLVKGIAAAMHFRSEEDPQAQELAALIDEKGPQAALAQISGLDANSDVVAEAVNAYNATK
>LS483455.1|SQH82837.1|162059_162650_-|mannitol-operon-repressor
MTQNPAQVSLRPNNRLSDMQAIMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNILVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVLSRTEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVMALPPPPHFDTSDAALYAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK
>LS483455.1|SQH82836.1|161840_162050_+|Putative-cytoplasmic-protein
MAKIGENVPLLIDKAVDFMASSQAFREYLNKTPPRDYVPSEVPSESAPIYLQRLEYYRRLYRPKEEERG
>LS483455.1|SQH82846.1|174579_176535_-|glycosyl-hydrolase
MNVLEVDLHKLTVSDPFLGQYQQLVRDVVIPYQWDALNDRIPEAEPSHAIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEVIELVAAAQCDDGYLNTYFTAKAPQERWSNLAECHELYCAGHLIEAGVAFFQATGKRRLLDVVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQRGAQPHFYDEEYEKRGQTSYWHTYGPAWMVKDKAYSQAHLPISQQQTAIGHAVRFVYLMTGVAHLARLSNDEGKRQDCLRLWKNMAQRQLYITGGIGSQSSGEAFSCDYDLPNDSVYAESCASIGLMMFARRMLEMEADSQYADVMERALYNTVLGGMALDGKHFFYVNPLEVHPKSLKFNHIYDHVKPIRQRWFGCACCPPNIARVLTSLGHYIYTPRADALYINMYVGNSMEIPVENGALKLRIGGNYPWHEQVKIAIDSVQPVRHTLALRLPDWCPEAKVTLNGLEVEQDIRKGYLHIRRTWQEGDTITLTLPMPVRRVYGNPLARHVAGKVAIQRGPLVYCLEQADNGEELHNLWLPKESEFRVFEGKGLFAHKMLIQAEGEKQSAPDAQHQALWHYDNAPSSRQPQTLTFIPWFSWANRGEGEMRIWVNER
>LS483455.1|SQH82847.1|176798_177614_+|transcriptional-regulator
MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEEECVFCVEAGESLLLWPHRRHIGVEEFPTDLKFYWLHFEVKAPDSDPRWLTHLSVPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAGVSLAWKVQQLIRTHYHLPLSSSVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFNDVGYFRQIFRKHTGLTPTAWKRRYSKEHVNS
>LS483455.1|SQH82848.1|177762_178458_-|L-ribulose-5-phosphate-4-epimerase
MLEQLKAEVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPSGVEYEVMTADDMVVVEIANGKIVEGNKKPSSDTATHLALYRRYPQIGGIVHTHSRHATIWSQAGLDLPAWGTTHADYFYGAIPCTRLMTVEEINGEYEYQTGEVIIKTFEERGLDPAQIPAVLVHSHGPFAWGKNAADAVHNAVVLEECAYMGLFSRQLAPQLPDMQPELLNKHYLRKHGANAYYGQ
>LS483455.1|SQH82849.1|178451_179312_-|L-xylulose-5-phosphate-3-epimerase
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLEWTSAQRASLVNAMLESGVAIPSMCLSAHRRFPFGSRDEAVRQRAREIMTKAIRLARDLGIRTIQLAGYDVYYEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFMNSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTGDSPGQFRDVPFGEGCVDFVGIFKTLHELNYRGSFLIEMWTEKSSEPVLEIIQARRWIESRMQEGGFTC
>LS483455.1|SQH82850.1|179316_179967_-|3-keto-L-gulonate-6-phosphate-decarboxylase
MSRPLLQLALDHTNLEAAQRDVALLQDHVDIVEAGTILCLTEGLSAVKALRAQCPEKIIVADWKVADAGETLAQQAFSAGANWMTIICAAPLATVEKGHAVAQSCGGEIQMELFGNWTLDDARDWYRVGVRQAIYHRGRDAQASGQQWGEADLTRMKALSDIGLELSITGGITPADLPLFRDINVKAFIAGRALAGAAHPAQVAAEFHAQIDAIWG
>LS483455.1|SQH82851.1|179963_181460_-|L-xylulose/3-keto-L-gulonate-kinase
MSNYWLGLDCGGSWLKAGLYDGAGREVAVQRLPLHALSPQPGWVERDMTELWQQCASVINKLLAHTGVNGSQIRGLGISAQGKGLFLLDKSDRPLGKAILSSDRRAMEIVQRWQKEAVPQKLYPLTRQTLWTGHPVSLLRWVKENEPQRYAQIGSVMMTHDYLRWCLTGVKGCEESNISESNLYNMATGQYDPRLTEWLGISEIDSALPPVVGSAEICGEITAQAAAITGLTVGTPVVGGLFDVVSTALCAGIEDESTLNAVMGTWAVTSGIAHGLRDHEAHPYVYGRYVNDGQYIVHEASPTSSGNLEWFTAQWGDLSFDEINQAVASLPKAGSDLFFLPFLYGSNAGLEMTCGFYGMQALHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVCALRVTGGPAHSDVWMQMLADVSGLRIELPQVEETGCFGAALAARVGTGVYRNFREAQRDLRHPVRTLLPDMAAHALYQRKYRQYQHLIEALQGYHARIKEHAL
>LS483455.1|SQH82852.1|181463_182450_-|C4-dicarboxylate-ABC-transporter-substrate-binding-protein
MKLHVIARSLLIAGLTVFSVSSLAAQSLRFGYETPQTDSQHIAAKKFNELLKEKTNDELTLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFTGLAPVFNLLDVPFLFRDTAHAHKTLDGKVGDELKKSLDSKGLKVLAYWENGWRDVTNSRAPVKTPGDLKGLKIRTNNSPMNIAAFKIFGANPIPMPFSEVYTGLETRTIDAQEHPINVVWSAKFYEVQKYLSLTHHAYSPLLLVINKAKFDALSPQFQEALLSSAKEAGDYQRKLVAEDQQKIIDGMKEAGVEVLTDIDRKAFSDALGSQVRDMFLKDNPQGADLLKAVDEVQ
>LS483455.1|SQH82853.1|182461_183739_-|dehydroascorbate-transporter
MAVVIFLCCLLGGIAIGLPIAWSLLLCGAALMAYLDMFDVQIMAQTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVIAAMIMASLSGSAVADTAAVAALLVPMMRSANYPINRSVGLIASGGIIAPIIPPSIPFIIFGVSSGLSISKLFMAGIAPGIMMGAALMLTWWWQAGRLNLPSQPKATPREIWQSLVSGIWALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVAVVIYRELTFSSLYHVLVNAAKTTSVVMFLVAAAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMISIMVVGMVMDLTPTVLILTPVLLPLVKEANIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGVFPYVVVLMSLLILFIFIPELIITPLKWIN
>LS483455.1|SQH82854.1|183741_184215_-|2,3-diketo-L-gulonate-TRAP-transporter-permease
MKRVLEGILAVLIAVLSCIVFINVILRYGFESSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFVVEKLSPANQRRLSLLTHSLILLLCIALGWGSLQKALQDWSDHSPILGLPIGLMYIACLPTSVAIALIELRRLYHLITRNDSFQQPQQGA
>LS483455.1|SQH82855.1|184353_185286_-|YiaX1
MKNNTGYIIGAYPCAPSFHQKSEEEETEFWRQLSDTPDIRGLEQPCLEHLHPLGDEWLLRHTPGNWQIVVTAIMETMRRRSENGGFGLASSDEEQRKACVEYYRHLYQKINKLNAKTPGKVIALELHAAPLAGNPNVAQATDAFARSLKEIANWDWSCDLVLEHCDAMTGPAPRKGFLPLVNVLETIADYDISVCINWARSAIEGRDTSLPLIHTQQAKQAGKLGALMFSGTTLDGEYGEWQDLHAPFVPFCPQSLMTEKHVKELITAAAPELLLFTGIKLLEINASADINHRINILRDGINMMKKATRS

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Crispr_ID: LS483455_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483455_2

925660-925993

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCGC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

5 spacers

cas3

The CRISPR arrays of LS483455_2

>merge|LS483455|2|925660-925993|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAGAAAAGTTTGTTTAGGCAATCAAGCCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTACAGCCAGTTCATGGAAAGTTTCAGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCCAAAACATCTTTCCCTGGTTCCTCTCAGGTGTTCGCCGCGCCAGCGGGGATAAACCGGGGATCGCGTTGGCGGTCGCATCCGTTGCCGTGTGTTACCCGCGTCAGCGGGGATAAACCGTACCAACAATTCAGCGTTACGCCAACGGTAACGTGTTCCCCGCGCCAACAAGGATAGCCGT

>LS483455|2|1|925660-925811|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGC	CCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCGC	GTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCGA

>LS483455|2|2|925660-925993|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>LS483455|2|1|925660-925993|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483455.1\|SQH83548.1\|935778_936825_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483455.1\|SQH83549.1\|937075_937984_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483455.1\|SQH83537.1\|921537_923175_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483455.1\|SQH83541.1\|926090_926888_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483455.1\|SQH83532.1\|915456_916752_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|237291
LS483455.1\|SQH83542.1\|926975_927338_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483455.1\|SQH83533.1\|916803_919038_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LS483455.1\|SQH83538.1\|923257_924556_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483455.1\|SQH83540.1\|925393_925540_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483455.1\|SQH83534.1\|919191_919479_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	unknown	unknown	gnl\|CDD\|226136
LS483455.1\|SQH83547.1\|933519_934809_-\|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
LS483455.1\|SQH83539.1\|924691_925363_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483455.1\|SQH83543.1\|927773_929573_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483455.1\|SQH83544.1\|929572_931285_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483455.1\|SQH83546.1\|932182_933136_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483455.1\|SQH83535.1\|919444_919741_+\|ParE-toxin-protein	unknown	unknown	gnl\|CDD\|226194
LS483455.1\|SQH83536.1\|920509_921310_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483455.1\|SQH83545.1\|931360_932095_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483455.1\|SQH83550.1\|937993_939433_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483455.1\|SQH83531.1\|912642_915399_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	unknown	unknown	gnl\|CDD\|236848

Protein	Function_ID	Function_description	E-value
LS483455.1\|SQH83548.1\|935778_936825_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483455.1\|SQH83549.1\|937075_937984_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483455.1\|SQH83537.1\|921537_923175_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483455.1\|SQH83541.1\|926090_926888_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	6.57148e-101
LS483455.1\|SQH83532.1\|915456_916752_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LS483455.1\|SQH83542.1\|926975_927338_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
LS483455.1\|SQH83533.1\|916803_919038_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LS483455.1\|SQH83538.1\|923257_924556_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483455.1\|SQH83539.1\|924691_925363_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
LS483455.1\|SQH83534.1\|919191_919479_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	4.75155e-18
LS483455.1\|SQH83547.1\|933519_934809_-\|helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.65474e-61
LS483455.1\|SQH83543.1\|927773_929573_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483455.1\|SQH83544.1\|929572_931285_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483455.1\|SQH83546.1\|932182_933136_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483455.1\|SQH83535.1\|919444_919741_+\|ParE-toxin-protein	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	3.56936e-12
LS483455.1\|SQH83536.1\|920509_921310_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
LS483455.1\|SQH83545.1\|931360_932095_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
LS483455.1\|SQH83550.1\|937993_939433_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483455.1\|SQH83531.1\|912642_915399_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0

>LS483455.1|SQH83540.1|925393_925540_+|Uncharacterised-protein
MPSVTHPLPCIVYFLYVNFDECIKALINFSIAMHGSRYFGKFKEKIIL
>LS483455.1|SQH83539.1|924691_925363_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483455.1|SQH83538.1|923257_924556_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483455.1|SQH83537.1|921537_923175_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVLEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>LS483455.1|SQH83536.1|920509_921310_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483455.1|SQH83535.1|919444_919741_+|ParE-toxin-protein
MRTVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSVIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>LS483455.1|SQH83534.1|919191_919479_+|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain
MARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>LS483455.1|SQH83533.1|916803_919038_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>LS483455.1|SQH83532.1|915456_916752_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>LS483455.1|SQH83531.1|912642_915399_-|BarA-sensory-histidine-kinase-(VarS-/-GacS)
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>LS483455.1|SQH83541.1|926090_926888_+|beta-lactamase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKQIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483455.1|SQH83542.1|926975_927338_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>LS483455.1|SQH83543.1|927773_929573_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQASASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPDLVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQQYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LS483455.1|SQH83544.1|929572_931285_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKESEAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483455.1|SQH83545.1|931360_932095_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483455.1|SQH83546.1|932182_933136_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNTQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>LS483455.1|SQH83547.1|933519_934809_-|helicase-Cas3
MRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPILHILAPHWQEQAEEGWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>LS483455.1|SQH83548.1|935778_936825_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483455.1|SQH83549.1|937075_937984_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483455.1|SQH83550.1|937993_939433_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELNERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA

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Crispr_ID: LS483455_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483455_3

934820-935764

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

15 spacers

cas3

The CRISPR arrays of LS483455_3

>merge|LS483455|3|934820-935764|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGATGATGAGCGCATCGTTCCGGGGACGGTGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTGGCCTCGTTATTAACTGGCAGCAATTCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAAAAGCGGAGGCACCACCTCGTAAAACGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATCGGCAACTTCTCCACCATCCTGGTAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCATCCCAAAAGGCCTGATTCAGGCCTTTATTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAACGTCTGCGGTTATTTCGGGCATGAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGCGGTCCTCCCGACTGTGCATTTTTTTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCAACCACACGAGCTCAAAAAATGCGTATGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCAACCACACGAGCTCAAAAAATGCGTATGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTACTGCCAGTTGACGGGGTTTATCGTTAAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGCGGAATGTCCTTTACCAGCGCCACAAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGTTTAATCTCTTCATCTGTGGCAATTTTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGATGTCGGAGCGCTGTCAGTTAATGGAGGGAGGGAGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGCTCGGTTTTAATTTCGTCGCTAAGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGTCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483455|3|2|934820-935703|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGATGAGCGCATCGTTCCGGGGACGGTGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGCCTCGTTATTAACTGGCAGCAATTCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAAAAGCGGAGGCACCACCTCGTAAAACGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCGGCAACTTCTCCACCATCCTGGTAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCCCAAAAGGCCTGATTCAGGCCTTTATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAACGTCTGCGGTTATTTCGGGCATGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGCGGTCCTCCCGACTGTGCATTTTTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAACCACACGAGCTCAAAAAATGCGTATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAACCACACGAGCTCAAAAAATGCGTATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTACTGCCAGTTGACGGGGTTTATCGTTAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGCGGAATGTCCTTTACCAGCGCCACAAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTTAATCTCTTCATCTGTGGCAATTTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTCGGAGCGCTGTCAGTTAATGGAGGGAGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LS483455|3|3|934820-935764|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGATGAGCGCATCGTTCCGGGGACGGTGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGCCTCGTTATTAACTGGCAGCAATTCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAAAAGCGGAGGCACCACCTCGTAAAACGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCGGCAACTTCTCCACCATCCTGGTAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCCCAAAAGGCCTGATTCAGGCCTTTATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAACGTCTGCGGTTATTTCGGGCATGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGCGGTCCTCCCGACTGTGCATTTTTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAACCACACGAGCTCAAAAAATGCGTATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAACCACACGAGCTCAAAAAATGCGTATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTACTGCCAGTTGACGGGGTTTATCGTTAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGCGGAATGTCCTTTACCAGCGCCACAAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTTAATCTCTTCATCTGTGGCAATTTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTCGGAGCGCTGTCAGTTAATGGAGGGAGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGTCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483455|3|2|934820-935764|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGATGAGCGCATCGTTCCGGGGACGGTGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGCCTCGTTATTAACTGGCAGCAATTCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAAAAGCGGAGGCACCACCTCGTAAAACGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCGGCAACTTCTCCACCATCCTGGTAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCCCAAAAGGCCTGATTCAGGCCTTTATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAACGTCTGCGGTTATTTCGGGCATGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGCGGTCCTCCCGACTGTGCATTTTTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAACCACACGAGCTCAAAAAATGCGTATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAACCACACGAGCTCAAAAAATGCGTATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTACTGCCAGTTGACGGGGTTTATCGTTAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGCGGAATGTCCTTTACCAGCGCCACAAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTTAATCTCTTCATCTGTGGCAATTTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTCGGAGCGCTGTCAGTTAATGGAGGGAGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGTCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483455.1\|SQH83548.1\|935778_936825_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483455.1\|SQH83549.1\|937075_937984_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483455.1\|SQH83551.1\|939419_940025_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LS483455.1\|SQH83541.1\|926090_926888_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483455.1\|SQH83557.1\|943135_943897_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LS483455.1\|SQH83542.1\|926975_927338_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483455.1\|SQH83538.1\|923257_924556_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483455.1\|SQH83555.1\|941629_942109_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LS483455.1\|SQH83540.1\|925393_925540_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483455.1\|SQH83543.1\|927773_929573_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483455.1\|SQH83547.1\|933519_934809_-\|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
LS483455.1\|SQH83554.1\|940919_941630_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LS483455.1\|SQH83552.1\|940075_940399_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LS483455.1\|SQH83550.1\|937993_939433_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483455.1\|SQH83544.1\|929572_931285_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483455.1\|SQH83546.1\|932182_933136_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483455.1\|SQH83556.1\|942105_943155_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LS483455.1\|SQH83553.1\|940589_940901_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LS483455.1\|SQH83545.1\|931360_932095_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483455.1\|SQH83539.1\|924691_925363_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126

Protein	Function_ID	Function_description	E-value
LS483455.1\|SQH83548.1\|935778_936825_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483455.1\|SQH83549.1\|937075_937984_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483455.1\|SQH83551.1\|939419_940025_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LS483455.1\|SQH83541.1\|926090_926888_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	6.57148e-101
LS483455.1\|SQH83557.1\|943135_943897_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
LS483455.1\|SQH83542.1\|926975_927338_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
LS483455.1\|SQH83538.1\|923257_924556_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483455.1\|SQH83555.1\|941629_942109_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
LS483455.1\|SQH83543.1\|927773_929573_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483455.1\|SQH83547.1\|933519_934809_-\|helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.65474e-61
LS483455.1\|SQH83554.1\|940919_941630_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
LS483455.1\|SQH83552.1\|940075_940399_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
LS483455.1\|SQH83550.1\|937993_939433_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483455.1\|SQH83544.1\|929572_931285_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483455.1\|SQH83546.1\|932182_933136_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483455.1\|SQH83556.1\|942105_943155_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LS483455.1\|SQH83553.1\|940589_940901_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LS483455.1\|SQH83545.1\|931360_932095_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
LS483455.1\|SQH83539.1\|924691_925363_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154

>LS483455.1|SQH83547.1|933519_934809_-|helicase-Cas3
MRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPILHILAPHWQEQAEEGWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>LS483455.1|SQH83546.1|932182_933136_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNTQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>LS483455.1|SQH83545.1|931360_932095_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483455.1|SQH83544.1|929572_931285_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKESEAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483455.1|SQH83543.1|927773_929573_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQASASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPDLVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQQYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LS483455.1|SQH83542.1|926975_927338_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>LS483455.1|SQH83541.1|926090_926888_+|beta-lactamase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKQIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483455.1|SQH83540.1|925393_925540_+|Uncharacterised-protein
MPSVTHPLPCIVYFLYVNFDECIKALINFSIAMHGSRYFGKFKEKIIL
>LS483455.1|SQH83539.1|924691_925363_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483455.1|SQH83538.1|923257_924556_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483455.1|SQH83548.1|935778_936825_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483455.1|SQH83549.1|937075_937984_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483455.1|SQH83550.1|937993_939433_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELNERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LS483455.1|SQH83551.1|939419_940025_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LS483455.1|SQH83552.1|940075_940399_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LS483455.1|SQH83553.1|940589_940901_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LS483455.1|SQH83554.1|940919_941630_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LS483455.1|SQH83555.1|941629_942109_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LS483455.1|SQH83556.1|942105_943155_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LS483455.1|SQH83557.1|943135_943897_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: LS483455_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483455_4

3696455-3696533

Orphan

Consensus_repeat	Method
GGTTTATGCCTGATGGCGCTACGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483455_4

>merge|LS483455|4|3696455-3696533|CRISPRCasFinder
GGTTTATGCCTGATGGCGCTACGCTTATCAGGCCTACATCTGGCTCAAGAATTGGTTTATGCCTGATGACGCTACGCTT

>LS483455|4|4|3696455-3696533|CRISPRCasFinder
GGTTTATGCCTGATGGCGCTACGCTT	ATCAGGCCTACATCTGGCTCAAGAATT
GGTTTATGCCTGATGACGCTACGCTT

Protein	Signature genes	Signature genes Name	Protein_function
LS483455.1\|SQH86095.1\|3706043_3706331_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
LS483455.1\|SQH86089.1\|3699135_3699666_-\|NAD(P)H-oxidoreductase	unknown	unknown	gnl\|CDD\|234852
LS483455.1\|SQH86077.1\|3682442_3684794_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
LS483455.1\|SQH86086.1\|3695603_3696452_+\|diadenosine-tetraphosphatase	unknown	unknown	gnl\|CDD\|273208
LS483455.1\|SQH86092.1\|3703520_3703943_-\|probable-secreted-protein	unknown	unknown	unknown
LS483455.1\|SQH86093.1\|3704236_3704467_-\|outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|380215
LS483455.1\|SQH86085.1\|3695215_3695593_+\|CorD-protein	unknown	unknown	gnl\|CDD\|180098
LS483455.1\|SQH86091.1\|3703006_3703297_+\|putative-secreted-protein	unknown	unknown	gnl\|CDD\|369322
LS483455.1\|SQH86079.1\|3687885_3688545_+\|ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|236659
LS483455.1\|SQH86087.1\|3696602_3697082_-\|dihydrofolate-reductase-type-I	unknown	unknown	gnl\|CDD\|182714
LS483455.1\|SQH86081.1\|3689705_3692066_+\|organic-solvent-tolerance-protein	unknown	unknown	gnl\|CDD\|235158
LS483455.1\|SQH86080.1\|3688639_3689452_-\|DnaJ-like-protein	unknown	unknown	gnl\|CDD\|236512
LS483455.1\|SQH86078.1\|3684967_3687874_+\|ATP-dependent-helicase-HepA	unknown	unknown	gnl\|CDD\|235319
LS483455.1\|SQH86094.1\|3704555_3705896_-\|putative-metabolite-transport-protein	unknown	unknown	gnl\|CDD\|340874
LS483455.1\|SQH86083.1\|3693405_3694395_+\|pyridoxal-phosphate-biosynthetic-protein-PdxA	unknown	unknown	gnl\|CDD\|234696
LS483455.1\|SQH86088.1\|3697280_3699143_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
LS483455.1\|SQH86082.1\|3692119_3693406_+\|survival-protein-SurA	unknown	unknown	gnl\|CDD\|236758
LS483455.1\|SQH86090.1\|3700219_3702109_-\|exported-sulfatase	unknown	unknown	gnl\|CDD\|225661
LS483455.1\|SQH86084.1\|3694391_3695213_+\|dimethyladenosine-transferase	unknown	unknown	gnl\|CDD\|234708
LS483455.1\|SQH86096.1\|3706327_3707614_-\|FixC-protein	unknown	unknown	gnl\|CDD\|182273

Protein	Function_ID	Function_description	E-value
LS483455.1\|SQH86095.1\|3706043_3706331_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.60149e-70
LS483455.1\|SQH86089.1\|3699135_3699666_-\|NAD(P)H-oxidoreductase	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	4.50571e-132
LS483455.1\|SQH86077.1\|3682442_3684794_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
LS483455.1\|SQH86086.1\|3695603_3696452_+\|diadenosine-tetraphosphatase	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
LS483455.1\|SQH86093.1\|3704236_3704467_-\|outer-membrane-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	8.57117e-30
LS483455.1\|SQH86085.1\|3695215_3695593_+\|CorD-protein	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	1.286e-75
LS483455.1\|SQH86091.1\|3703006_3703297_+\|putative-secreted-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	4.44283e-13
LS483455.1\|SQH86079.1\|3687885_3688545_+\|ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	3.13546e-157
LS483455.1\|SQH86087.1\|3696602_3697082_-\|dihydrofolate-reductase-type-I	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.70454e-127
LS483455.1\|SQH86081.1\|3689705_3692066_+\|organic-solvent-tolerance-protein	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
LS483455.1\|SQH86080.1\|3688639_3689452_-\|DnaJ-like-protein	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.89868e-171
LS483455.1\|SQH86078.1\|3684967_3687874_+\|ATP-dependent-helicase-HepA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
LS483455.1\|SQH86094.1\|3704555_3705896_-\|putative-metabolite-transport-protein	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41494e-58
LS483455.1\|SQH86083.1\|3693405_3694395_+\|pyridoxal-phosphate-biosynthetic-protein-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
LS483455.1\|SQH86088.1\|3697280_3699143_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
LS483455.1\|SQH86082.1\|3692119_3693406_+\|survival-protein-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
LS483455.1\|SQH86090.1\|3700219_3702109_-\|exported-sulfatase	gnl\|CDD\|225661	COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism].	4.47416e-83
LS483455.1\|SQH86084.1\|3694391_3695213_+\|dimethyladenosine-transferase	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	1.54482e-146
LS483455.1\|SQH86096.1\|3706327_3707614_-\|FixC-protein	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0

>LS483455.1|SQH86086.1|3695603_3696452_+|diadenosine-tetraphosphatase
MATYLIGDVHGCYDELIALLQQVEFTPDTDTLWLTGDLVARGPGSLDVLRYVKSLGNSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELSGLARLRFITNAFTRMRYCFPNGQLDMYSKASPENAPAPLKPWFAIPGPVSEAYSIAFGHWASLEGKGTPEGIYALDTGCCWGGELTCLRWEDKQYFVQPSNRQMDMGEGEAVNA
>LS483455.1|SQH86085.1|3695215_3695593_+|CorD-protein
MINSPRVCIQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNGHGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENGDAFTIDIPVFRLAVPTLIH
>LS483455.1|SQH86084.1|3694391_3695213_+|dimethyladenosine-transferase
MNNRVHQGHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDKLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELSAQLGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSVNAPLKES
>LS483455.1|SQH86083.1|3693405_3694395_+|pyridoxal-phosphate-biosynthetic-protein-PdxA
MSSAQRVVITPGEPAGIGPDLVVQLAQRAWPIELVVCADGALLTERAAMLGLPLSLLPYSPDVPAAPQPVGTLTLLPVSLRAPAIPGQLTVENGPYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRAIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNTQ
>LS483455.1|SQH86082.1|3692119_3693406_+|survival-protein-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNLSHILIALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>LS483455.1|SQH86081.1|3689705_3692066_+|organic-solvent-tolerance-protein
MKKRIPTLLATMIASALYSHQGLAADLASQCMLGVPSYDRPLVKGDTNDLPVTINADNAKGNYPDDAVFTGNVDIMQGNSRLQADEVQLHQKQAEGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTKNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLTQAGAGLMELDYLPSDKVYEDEHPKEGDKHRWLFYWQHSGVMDQVWRFNVDYTKVSDSSYFNDFDSKYGSSTDGYATQKFSVGYAVQNFDATVSTKQFQVFNDQNTSSYSAEPQLDVNYYHNDLGPFDTRIYGQAVHFVNTKDNMPEATRVHLEPTINLPLSNRWGSLNTEAKLMATHYQQTNLDSYNSDPNNKNKLEDSVNRVMPQFKVDGKLIFERDMAMLAPGYTQTLEPRVQYLYVPYRDQSGIYNYDSSLLQSDYNGLFRDRTYGGLDRIASANQVTTGVTTRVYDDAAVERFNVSVGQIYYFTESRTGDDNIKWENDDKTGSLVWAGDTYWRISERWGLRSGVQYDTRLDSVATSSSSLEYRRDQDRLVQLNYRYASPEYIQATLPSYYSTAEQYKNGINQVGAVASWPIADRWSIVGAYYFDTNSSKPADQMLGLQYNSCCYAIRVGYERKLNGWDNDKQHAIYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQSSM
>LS483455.1|SQH86080.1|3688639_3689452_-|DnaJ-like-protein
MQYWGKIIGVAVALMMGGGFWGVVLGLLVGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGDSRTAAQNAFRVGKADNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNEREVLYVIAEELGISRIQFDQFLRMMQGGAQFGGGYHQQSGGGWQQAQRGPTLEDACNVLGVKTTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAYELIKEQKGFK
>LS483455.1|SQH86079.1|3687885_3688545_+|ribosomal-large-subunit-pseudouridine-synthase-A
MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLEAHKDSIMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEALSLAPRLQLHAEMLTITHPAYGTSMTFKVPADF
>LS483455.1|SQH86078.1|3684967_3687874_+|ATP-dependent-helicase-HepA
MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHEGWQLHIDEVKEENGLLVYVGTRLDTEETNVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPYSGLRGQRTNLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLCDAEWDLLVVDEAHHLVWSTDAPSREYMAIEQLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQKNYRPVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSAYASLINYLAAPEETDGFDDLIKSCREQHEALKAQLEQGRDRLLEIHSNGGEKAQQLAQSIEEQDDDTNLIAFAMNLFDIVGINQDDRGDNLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEKSARALIDNARREADEKLSGELSRLEALRAVNPNIRDDELAAIDSNRQQVLESLNQAGWRLDALRLIVVTHQ
>LS483455.1|SQH86077.1|3682442_3684794_+|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPVQATLAPQESVAFIPTSQTSRAASLLQAEKDYRLTPLQLRDFHRQPVSGLYCRTHRQLMRMEKLLRENGVTVYEADVRPPERYLMERFITSPVWVDGEMRNGVIRNARLKPHPDYRPPLKWVSLDIETTRHGELYCIGLEGCGQRTVYMLGPANGDDRQLDFELVYVASRPQLLEKLNAWFAEHDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQARGRVIIDGIDALKSAFWNFSSFSLEAVSQELLGEGKSIDNPWDRMDEIDRRFAQDKPALATYNLKDCELVTRIFHKTEIMPFLLERATINGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPLASPGGYVMDSQPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVSQIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHAIMRQTKALIEAQGYNVIYGDTDSTFVWLRRAHSEADAAEIGHRLVRHVNEWWAQTLQQQNLTSALELEFETHFCRFLMPTIRGADTGSKKRYAGLIQEGDSQRMVFKGLETVRTDWTPLAQRFQQELYLRVFRNEPYQDYVRETIDKLMAGELDAQLVYRKRLRRPLHEYQRNIPPHVRAARLADEQNLKRGRPAQYQNRGAIKYVWTVNGPEPVDYQQSPLDYEHYLTRQLQPVAEGILPFVEDNFATLLTGQLGLF
>LS483455.1|SQH86087.1|3696602_3697082_-|dihydrofolate-reductase-type-I
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRHTWESIGRPLPGRKNIVISSQPGTDDRVQWVKSVDEAIAACGDAPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>LS483455.1|SQH86088.1|3697280_3699143_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLLQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMVVCGGLIGLFCMFLGLRWQVAELIGMTLALSSTAIAMQAMNERNLTVSQVGRSAFAVLLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLVENPLRILLLLAGFLAIKIVMLWLVARPLGVPAKQRRWFAVLLGQGSEFAFVVFGAAQIAGVLEPEWAKALTLAVALSMAATPIFLVLLTRMEKTATGEAREADEIDEEQPRVIVAGFGRFGQIAGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLSELVKSHFPHLQIIARARDVDHYIRLRQAGVAMPERETFEGALKSGRQALEALGLGRYEARERADLFRHFNTRMVEEMAKGENDPLSRAAAYKRTSAMLSEIITEDREHLSLIQRHGWQGTAEGKHSGEVADEPEVKPSI
>LS483455.1|SQH86089.1|3699135_3699666_-|NAD(P)H-oxidoreductase
MILIIYAHPYPHHSHANKRMLEQAGTLENVEIRSLYHLYPDFNIDVAAEQEALSRASLIVWQHPMQWYSVPPLLKLWMDKVLTHGWAYGHGGTALHGKHLLWAVTTGGGENHFAIGSHPGFDVLSQPLQATALYCGLKWLPPFAMHCTFICDDDTLQAQARQYKQRLLAWQEVNHG
>LS483455.1|SQH86090.1|3700219_3702109_-|exported-sulfatase
MSNKKNLSTEEADLTRRKLLTSAGILAAGGMLSGAVKADEKCAVKAKPAWDKPFTGEIPEKLPEGYNILLVVTDQERFFPTFPFPVPGRERLMKTGVTFCNHQNTSNVCTPSRSVLYTGLHMPQTKMFDNLGLPWMPYDLDPALGTTGHMMRELGYYTAYKGKWHLTEKLEKPLPDEKDEDIDVGDIPEPELHKIMEKYGFADYHGIGDIIGHSKGGYFYDSTTTAQTINWLRCKGQPLNDQHKPWFLAVNLVNPHDVMFIDTDKEGEKVQWRGELDQDDNTLAPTQPPENELYQASWPNYPLPANRHQSFNEQGRPPAHLEYQTARAALEGQFPDEDRRWRKLLDYYFNCIRDCDTHLDRILNELDALKLTDKTIVVFTADHGELGGSHQMHGKGASVYKEQIHVPMIISHPAYPGNKKCQALTCHLDIAPTLVGLTGLPEEKQHQALGNRKGVNFSGLLKNPEGVAVNAVRNASLYCYGMILYTDAHYLHRVIALQRDKQKTVAQIKQEISHLHPDFSHRSGTRMINDGRYKFARYFSLREHNTPETWEDLIKYNDLELYDLKNDPDENHNLAADKQKYQDLILTMNEKLNKIIKDEIGVDDGSFMPDAAHEPWDLTIEQFNRMAKD
>LS483455.1|SQH86091.1|3703006_3703297_+|putative-secreted-protein
MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDAAK
>LS483455.1|SQH86092.1|3703520_3703943_-|probable-secreted-protein
MKLKLIPFYFLALFSAASGATEINACKDLIGTWKTTADNPTYTMTILPPVEGCGEKCVKLNVQYELDVTHRNALYCHEGQEGVKGQGPMVIAFEGAYGGHAIGTYNRQLQLLWAGVIPKNKKGKWITKMENYWFRQVKAH
>LS483455.1|SQH86093.1|3704236_3704467_-|outer-membrane-lipoprotein
MQKRLMTALFTAATLFTVAGCSSNQAVETTDGKTIVTDGKPEVDNDTGMVSYKNAATGKTEQINRDQLKNMSELDN
>LS483455.1|SQH86094.1|3704555_3705896_-|putative-metabolite-transport-protein
MPQPRNFDDLKFSSIHRRIMLWGSGGPFLDGYVLVIIGVALEQLTPLLHLDAEWIGALGAATLAGLFIGTSLFGYICDKVGRRKMFLLDIIAIGVISVATMFVSTPLELLVMRVLIGIVIGADYPIATSMITEFSNTRQRAFSIGFIAAMWYVGATCANLVGYWLYDMEGGWRWMLGSAFIPCLIILIGRFDLPESPRWLLRKGRVKECEQMMIKLFGEPVCFDDEPPQETRFLQLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGWEQGRNAALGNVVISLFFMLGCIPAMFWLNSIGRRPLLIGSFAMMTIALALLGLVSNLGIILVVVAFAVYAFFSGGPGILQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFITRYGINNVMLIGALISLVGLGVSVMFAPETRGLTLTQTGNMTLRGTPSDNPR
>LS483455.1|SQH86095.1|3706043_3706331_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEDSPHIILKTDPDKQALEVLIKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLDTALEKWEYPRGTFGVEFRYG
>LS483455.1|SQH86096.1|3706327_3707614_-|FixC-protein
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLERIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNVVQRDGKVVGVEADGDILEAKVVILADGVNSLLAEKLGMAKRVEASHVAVGVKELIELPKSVIEDRFQLQGNEGAACLFAGAPTDGLMGGGFLYTNETTLSLGLVCGLHHLKDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYAAHVVPEAGMNMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAISAGEAAAKTVLSAMKRDDFSKQSLGEYRQHLDEGPMRDMRMYQKLPAFLDNPRMFTAYPEMAVNIARDLFTVDGSAPVPMRKKILRHAKKVGFINLMKDGLKGVTVL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483455_3	3.2\|934910\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	934910-934941	32	KT630644	Salmonella phage SEN1, complete genome	25528-25559	0	1.0
LS483455_3	3.5\|935093\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935093-935124	32	NC_010392	Phage Gifsy-1, complete genome	22309-22340	0	1.0
LS483455_3	3.7\|935215\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935215-935246	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	18710-18741	0	1.0
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	NZ_CP030229	Salmonella enterica strain SA20041605 plasmid pSA20041605.4, complete sequence	507-538	0	1.0
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	NC_004313	Salmonella phage ST64B, complete genome	18937-18968	0	1.0
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	NC_031129	Salmonella phage SJ46, complete genome	31147-31178	0	1.0
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	18937-18968	0	1.0
LS483455_3	3.3\|934971\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	934971-935002	32	KC139521	Salmonella phage FSL SP-004, complete genome	5753-5784	1	0.969
LS483455_3	3.3\|934971\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	934971-935002	32	NC_005340	Enterobacteria phage PsP3, complete genome	6536-6567	1	0.969
LS483455_3	3.3\|934971\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	934971-935002	32	KT630644	Salmonella phage SEN1, complete genome	5816-5847	1	0.969
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	KC139521	Salmonella phage FSL SP-004, complete genome	13808-13839	1	0.969
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	NC_005340	Enterobacteria phage PsP3, complete genome	14642-14673	1	0.969
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	KU927493	Salmonella phage 118970_sal3, complete genome	17256-17287	1	0.969
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	KU927493	Salmonella phage 118970_sal3, complete genome	56847-56878	1	0.969
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	MK972710	Salmonella phage SI22, complete genome	14597-14628	1	0.969
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	NC_049459	Salmonella phage SW9, complete genome	14610-14641	1	0.969
LS483455_3	3.2\|934910\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	934910-934941	32	MK972710	Salmonella phage SI22, complete genome	26452-26483	2	0.938
LS483455_3	3.2\|934910\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	934910-934941	32	NC_049459	Salmonella phage SW9, complete genome	26465-26496	2	0.938
LS483455_3	3.3\|934971\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	934971-935002	32	MK972710	Salmonella phage SI22, complete genome	6542-6573	2	0.938
LS483455_3	3.3\|934971\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	934971-935002	32	NC_049459	Salmonella phage SW9, complete genome	6555-6586	2	0.938
LS483455_3	3.4\|935032\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935032-935063	32	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	19732-19763	2	0.938
LS483455_3	3.4\|935032\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935032-935063	32	NC_049393	Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1	19510-19541	2	0.938
LS483455_3	3.4\|935032\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935032-935063	32	NC_049394	Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1	19772-19803	2	0.938
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	68310-68341	2	0.938
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	84567-84598	2	0.938
LS483455_3	3.13\|935582\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935582-935613	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	7712-7743	2	0.938
LS483455_3	3.4\|935032\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935032-935063	32	NC_047854	Cronobacter phage ESSI-2, complete genome	19919-19950	3	0.906
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	CP053410	Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence	92769-92800	5	0.844
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	NZ_CP014707	Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence	37352-37383	5	0.844
LS483455_3	3.13\|935582\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935582-935613	32	NC_004313	Salmonella phage ST64B, complete genome	17765-17796	5	0.844
LS483455_3	3.13\|935582\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935582-935613	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	17765-17796	5	0.844
LS483455_4	4.1\|3696481\|27\|LS483455\|CRISPRCasFinder	3696481-3696507	27	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	180996-181022	5	0.815
LS483455_2	2.6\|925872\|32\|LS483455\|CRISPRCasFinder,CRT	925872-925903	32	NZ_CP041606	Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence	6595-6626	6	0.812
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	KJ094025	Listeria phage LP-032 contig 2, partial genome	34213-34244	6	0.812
LS483455_3	3.12\|935521\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935521-935552	32	KJ094020	Listeria phage LP-026, complete genome	52854-52885	6	0.812
LS483455_2	2.6\|925872\|32\|LS483455\|CRISPRCasFinder,CRT	925872-925903	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
LS483455_2	2.1\|925690\|31\|LS483455\|PILER-CR	925690-925720	31	MK605244	Nodularia phage vB_NspS-kac65v162, complete genome	141954-141984	8	0.742
LS483455_2	2.1\|925690\|31\|LS483455\|PILER-CR	925690-925720	31	MK605242	Nodularia phage vB_NspS-kac65v151, complete genome	141539-141569	8	0.742
LS483455_2	2.1\|925690\|31\|LS483455\|PILER-CR	925690-925720	31	MK605243	Nodularia phage vB_NspS-kac65v161, complete genome	141656-141686	8	0.742
LS483455_2	2.3\|925689\|32\|LS483455\|CRISPRCasFinder,CRT	925689-925720	32	MK605244	Nodularia phage vB_NspS-kac65v162, complete genome	141954-141985	8	0.75
LS483455_2	2.3\|925689\|32\|LS483455\|CRISPRCasFinder,CRT	925689-925720	32	MK605242	Nodularia phage vB_NspS-kac65v151, complete genome	141539-141570	8	0.75
LS483455_2	2.3\|925689\|32\|LS483455\|CRISPRCasFinder,CRT	925689-925720	32	MK605243	Nodularia phage vB_NspS-kac65v161, complete genome	141656-141687	8	0.75
LS483455_2	2.6\|925872\|32\|LS483455\|CRISPRCasFinder,CRT	925872-925903	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	20537-20568	9	0.719
LS483455_2	2.6\|925872\|32\|LS483455\|CRISPRCasFinder,CRT	925872-925903	32	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	222471-222502	9	0.719
LS483455_2	2.6\|925872\|32\|LS483455\|CRISPRCasFinder,CRT	925872-925903	32	MT075871	Klebsiella phage vB_KleS-HSE3, complete genome	29026-29057	9	0.719
LS483455_3	3.1\|934849\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	934849-934880	32	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	477546-477577	9	0.719
LS483455_3	3.4\|935032\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935032-935063	32	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	157707-157738	9	0.719
LS483455_3	3.4\|935032\|32\|LS483455\|PILER-CR,CRISPRCasFinder,CRT	935032-935063	32	NC_013860	Azospirillum sp. B510 plasmid pAB510f, complete sequence	117249-117280	9	0.719
LS483455_2	2.6\|925872\|32\|LS483455\|CRISPRCasFinder,CRT	925872-925903	32	MN694675	Marine virus AFVG_250M635, complete genome	6608-6639	10	0.688

1. spacer 3.2|934910|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to KT630644 (Salmonella phage SEN1, complete genome) position: , mismatch: 0, identity: 1.0

cgtggcctcgttattaactggcagcaattcta	CRISPR spacer
cgtggcctcgttattaactggcagcaattcta	Protospacer
********************************

2. spacer 3.5|935093|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 0, identity: 1.0

catcccaaaaggcctgattcaggcctttattg	CRISPR spacer
catcccaaaaggcctgattcaggcctttattg	Protospacer
********************************

3. spacer 3.7|935215|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gctgcggtcctcccgactgtgcatttttttgc	CRISPR spacer
gctgcggtcctcccgactgtgcatttttttgc	Protospacer
********************************

4. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030229 (Salmonella enterica strain SA20041605 plasmid pSA20041605.4, complete sequence) position: , mismatch: 0, identity: 1.0

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ccgtttaatctcttcatctgtggcaattttta	Protospacer
********************************

5. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 0, identity: 1.0

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ccgtttaatctcttcatctgtggcaattttta	Protospacer
********************************

6. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ccgtttaatctcttcatctgtggcaattttta	Protospacer
********************************

7. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 0, identity: 1.0

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ccgtttaatctcttcatctgtggcaattttta	Protospacer
********************************

8. spacer 3.3|934971|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to KC139521 (Salmonella phage FSL SP-004, complete genome) position: , mismatch: 1, identity: 0.969

ccaaaagcggaggcaccacctcgtaaaacgac	CRISPR spacer
ccaaaagcggaggcaccaccccgtaaaacgac	Protospacer
********************.***********

9. spacer 3.3|934971|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_005340 (Enterobacteria phage PsP3, complete genome) position: , mismatch: 1, identity: 0.969

ccaaaagcggaggcaccacctcgtaaaacgac	CRISPR spacer
ccaaaagcggaggcaccaccacgtaaaacgac	Protospacer
******************** ***********

10. spacer 3.3|934971|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to KT630644 (Salmonella phage SEN1, complete genome) position: , mismatch: 1, identity: 0.969

ccaaaagcggaggcaccacctcgtaaaacgac	CRISPR spacer
ccaaaagcggaggcaccaccccgtaaaacgac	Protospacer
********************.***********

11. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to KC139521 (Salmonella phage FSL SP-004, complete genome) position: , mismatch: 1, identity: 0.969

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ccgtttaatctcttcatctgtggcgattttta	Protospacer
************************.*******

12. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_005340 (Enterobacteria phage PsP3, complete genome) position: , mismatch: 1, identity: 0.969

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ccgtttaaactcttcatctgtggcaattttta	Protospacer
******** ***********************

13. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ccgtttaatctcctcatctgtggcaattttta	Protospacer
************.*******************

14. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ccgtttaatctcctcatctgtggcaattttta	Protospacer
************.*******************

15. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to MK972710 (Salmonella phage SI22, complete genome) position: , mismatch: 1, identity: 0.969

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ccgtttaatctcttcatctgtggcgattttta	Protospacer
************************.*******

16. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_049459 (Salmonella phage SW9, complete genome) position: , mismatch: 1, identity: 0.969

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ccgtttaatctcttcatctgtggcgattttta	Protospacer
************************.*******

17. spacer 3.2|934910|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to MK972710 (Salmonella phage SI22, complete genome) position: , mismatch: 2, identity: 0.938

cgtggcctcgttattaactggcagcaattcta	CRISPR spacer
cgtggccttgttattgactggcagcaattcta	Protospacer
********.******.****************

18. spacer 3.2|934910|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_049459 (Salmonella phage SW9, complete genome) position: , mismatch: 2, identity: 0.938

cgtggcctcgttattaactggcagcaattcta	CRISPR spacer
cgtggccttgttattgactggcagcaattcta	Protospacer
********.******.****************

19. spacer 3.3|934971|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to MK972710 (Salmonella phage SI22, complete genome) position: , mismatch: 2, identity: 0.938

ccaaaagcggaggcaccacctcgtaaaacgac	CRISPR spacer
ccaaaagcggaggcacccccccgtaaaacgac	Protospacer
***************** **.***********

20. spacer 3.3|934971|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_049459 (Salmonella phage SW9, complete genome) position: , mismatch: 2, identity: 0.938

ccaaaagcggaggcaccacctcgtaaaacgac	CRISPR spacer
ccaaaagcggaggcacccccccgtaaaacgac	Protospacer
***************** **.***********

21. spacer 3.4|935032|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.938

ggatcggcaacttctccaccatcctggtaaac	CRISPR spacer
ggatcggtaacttctccaccatccttgtaaac	Protospacer
*******.***************** ******

22. spacer 3.4|935032|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_049393 (Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.938

ggatcggcaacttctccaccatcctggtaaac	CRISPR spacer
ggatcggtaacttctccaccatccttgtaaac	Protospacer
*******.***************** ******

23. spacer 3.4|935032|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_049394 (Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.938

ggatcggcaacttctccaccatcctggtaaac	CRISPR spacer
ggatcggtaacttctccaccatccttgtaaac	Protospacer
*******.***************** ******

24. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ttgtttaatctcttcatctgtggcaattttta	Protospacer
..******************************

25. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ttgtttaatctcttcatctgtggcaattttta	Protospacer
..******************************

26. spacer 3.13|935582|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 2, identity: 0.938

atgtcggagcgctgtcagttaatggagggagg	CRISPR spacer
atgtcggagcgctgtcagttaatggaggacgg	Protospacer
****************************. **

27. spacer 3.4|935032|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_047854 (Cronobacter phage ESSI-2, complete genome) position: , mismatch: 3, identity: 0.906

ggatcggcaacttctccaccatcctggtaaac	CRISPR spacer
gcatcggcaacttctccaccattctggtgaac	Protospacer
* ********************.*****.***

28. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ttgtttaatctcttcatctgtggcaatgttcc	Protospacer
..************************* **.

29. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014707 (Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence) position: , mismatch: 5, identity: 0.844

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ttgtttaatctcttcatctgtggcgatgttca	Protospacer
..**********************.** **.*

30. spacer 3.13|935582|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 5, identity: 0.844

atgtcggagcgctgtcagttaatggagggagg	CRISPR spacer
acgttgaggcactgtcagttaatggagggagg	Protospacer
*.**.*..**.*********************

31. spacer 3.13|935582|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 5, identity: 0.844

atgtcggagcgctgtcagttaatggagggagg	CRISPR spacer
acgttgaggcactgtcagttaatggagggagg	Protospacer
*.**.*..**.*********************

32. spacer 4.1|3696481|27|LS483455|CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

atcaggcctacatctggctcaagaatt	CRISPR spacer
acgtggcctccatctggctcaagaatg	Protospacer
*.  ***** ****************

33. spacer 2.6|925872|32|LS483455|CRISPRCasFinder,CRT matches to NZ_CP041606 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcgttggaggtcgcctccgacgactt	Protospacer
************* ****** **** .* * *

34. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to KJ094025 (Listeria phage LP-032 contig 2, partial genome) position: , mismatch: 6, identity: 0.812

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ttttctaatctcttcatcttgggcaattttta	Protospacer
.. *.**************  ***********

35. spacer 3.12|935521|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 6, identity: 0.812

ccgtttaatctcttcatctgtggcaattttta	CRISPR spacer
ttttctaatctcttcatcttgggcaattttta	Protospacer
.. *.**************  ***********

36. spacer 2.6|925872|32|LS483455|CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgttggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

37. spacer 2.1|925690|31|LS483455|PILER-CR matches to MK605244 (Nodularia phage vB_NspS-kac65v162, complete genome) position: , mismatch: 8, identity: 0.742

ccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
cagaaggtgtttgtataggcaaacaagcccc	Protospacer
* ..*.. ****** ******* ********

38. spacer 2.1|925690|31|LS483455|PILER-CR matches to MK605242 (Nodularia phage vB_NspS-kac65v151, complete genome) position: , mismatch: 8, identity: 0.742

ccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
cagaaggtgtttgtataggcaaacaagcccc	Protospacer
* ..*.. ****** ******* ********

39. spacer 2.1|925690|31|LS483455|PILER-CR matches to MK605243 (Nodularia phage vB_NspS-kac65v161, complete genome) position: , mismatch: 8, identity: 0.742

ccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
cagaaggtgtttgtataggcaaacaagcccc	Protospacer
* ..*.. ****** ******* ********

40. spacer 2.3|925689|32|LS483455|CRISPRCasFinder,CRT matches to MK605244 (Nodularia phage vB_NspS-kac65v162, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

41. spacer 2.3|925689|32|LS483455|CRISPRCasFinder,CRT matches to MK605242 (Nodularia phage vB_NspS-kac65v151, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

42. spacer 2.3|925689|32|LS483455|CRISPRCasFinder,CRT matches to MK605243 (Nodularia phage vB_NspS-kac65v161, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

43. spacer 2.6|925872|32|LS483455|CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcattgccggtcgcatcgatgacgac	Protospacer
********.*** ********** .* .* ..

44. spacer 2.6|925872|32|LS483455|CRISPRCasFinder,CRT matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gtgatcgccttgccggtcgcatccgccgaaac	Protospacer
* ****** *** ************..*  ..

45. spacer 2.6|925872|32|LS483455|CRISPRCasFinder,CRT matches to MT075871 (Klebsiella phage vB_KleS-HSE3, complete genome) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcgtaggcggccgcatcgactacaag	Protospacer
********** *****.****** ..*.* .

46. spacer 3.1|934849|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

atgatgagcgcatcgttccggggacggtggaa	CRISPR spacer
ccgatgagcgcctcgttccagggacacgggct	Protospacer
 .********* *******.*****.  **

47. spacer 3.4|935032|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 9, identity: 0.719

ggatcggcaacttctccaccatcctggtaaac	CRISPR spacer
ggatcggcatcttctcgaccatcatcaccttc	Protospacer
********* ****** ****** * ..   *

48. spacer 3.4|935032|32|LS483455|PILER-CR,CRISPRCasFinder,CRT matches to NC_013860 (Azospirillum sp. B510 plasmid pAB510f, complete sequence) position: , mismatch: 9, identity: 0.719

ggatcggcaacttctccaccatcctggtaaac	CRISPR spacer
aaaaagaaaacttctccaccatccaggaaaat	Protospacer
..*  *. **************** ** ***.

49. spacer 2.6|925872|32|LS483455|CRISPRCasFinder,CRT matches to MN694675 (Marine virus AFVG_250M635, complete genome) position: , mismatch: 10, identity: 0.688

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
tttgctgaattggcggacgcatccattgccgt	Protospacer
   ...* .******* *******.*******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

628629 : 646250

Salmonella_phage(40.0%)

integrase,tail,terminase,protease

attL 622696:622716|attR 648535:648555

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
622696:622716	attL	NA	NA	NA	NA
SQH83266.1\|628629_630198_+	Methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-12	33.5
SQH83267.1\|630194_630839_-	transcriptional regulator	NA	NA	NA	NA
SQH83268.1\|631073_631841_+	siderophore-interacting protein	NA	NA	NA	NA
SQH83269.1\|632115_632961_-	Predicted nucleotide-binding protein containing TIR-like domain	NA	NA	NA	NA
SQH83270.1\|633044_634061_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	3.8e-191	97.0
SQH83271.1\|634060_634636_-	repressor protein	A0A218M4J1	Erwinia_phage	3.4e-59	57.6
SQH83272.1\|634765_635029_+	phage regulatory protein	A0A218M4I5	Erwinia_phage	4.1e-44	98.9
SQH83273.1\|635059_635569_+	phage regulatory protein	A0A0M4QWN1	Salmonella_phage	1.1e-88	98.2
SQH83274.1\|635576_635804_+	bacteriophage protein	A0A0M4RTI3	Salmonella_phage	3.2e-37	98.7
SQH83275.1\|635790_635991_+	signal peptide protein	A0A0M5M7U3	Salmonella_phage	2.3e-31	98.5
SQH83276.1\|636032_636602_-\|terminase	Phage terminase ATPase subunit	S4TT96	Salmonella_phage	4.3e-83	96.2
SQH83277.1\|636682_637876_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	2.2e-185	91.7
SQH83278.1\|637890_638376_+	gp25	Q6K1G5	Salmonella_virus	1.0e-85	100.0
SQH83279.1\|638372_639542_+	phage late control gene D	A0A0M5M5V5	Salmonella_phage	1.1e-210	97.7
SQH83280.1\|639608_639827_+	phage late control gene	A0A2I8TV89	Erwinia_phage	9.5e-39	98.6
SQH83281.1\|640185_640692_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
SQH83282.1\|640815_642798_-	RNA polymerase sigma-70 factor	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
SQH83283.1\|642812_644558_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
SQH83284.1\|644793_645009_-	30S ribosomal subunit protein S21	NA	NA	NA	NA
SQH83285.1\|645236_646250_+\|protease	glycoprotease	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
648535:648555	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1634182 : 1643353

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH84162.1\|1634182_1635130_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
SQH84163.1\|1635113_1635845_+	putative permease transmembrane component	NA	NA	NA	NA
SQH84164.1\|1635825_1635933_-	membrane protein	NA	NA	NA	NA
SQH84165.1\|1635992_1636724_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
SQH84166.1\|1636946_1638632_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
SQH84167.1\|1638628_1639348_+	two-component system response regulator	NA	NA	NA	NA
SQH84168.1\|1639394_1639862_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
SQH84169.1\|1639918_1640449_-	lipoprotein	NA	NA	NA	NA
SQH84170.1\|1640620_1641079_-	lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
SQH84171.1\|1641319_1643353_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	6.1e-55	27.6

DBSCAN-SWA_3

1890994 : 1996126

104

Enterobacteria_phage(20.37%)

holin,terminase,protease,transposase,integrase,tail,lysis

attL 1955588:1955603|attR 1993882:1993897

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH84410.1\|1890994_1891678_-\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
SQH84411.1\|1891848_1892250_-\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH84412.1\|1892384_1893827_-	pyruvate kinase A	NA	NA	NA	NA
SQH84413.1\|1893950_1894820_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
SQH84414.1\|1895161_1896637_+	glucose 6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.0e-79	37.5
SQH84415.1\|1896871_1898683_+	6-phosphogluconate dehydratase	NA	NA	NA	NA
SQH84416.1\|1898720_1899362_+	KHG/KDPG aldolase	NA	NA	NA	NA
SQH84417.1\|1899461_1900640_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
SQH84418.1\|1900770_1901061_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA
SQH84419.1\|1901128_1901482_+	protein YebF	NA	NA	NA	NA
SQH84420.1\|1901575_1902235_+	inner membrane protein YebE	NA	NA	NA	NA
SQH84421.1\|1902447_1904499_+	oligopeptidase	NA	NA	NA	NA
SQH84422.1\|1904533_1905232_-	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.8e-07	40.4
SQH84423.1\|1905255_1905912_-	Putative amido hydrolase	NA	NA	NA	NA
SQH84424.1\|1906019_1906250_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
SQH84425.1\|1906387_1906762_+	Copper resistance protein CopC	NA	NA	NA	NA
SQH84426.1\|1906762_1907638_+	membrane protein	NA	NA	NA	NA
SQH84427.1\|1907654_1908008_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
SQH84428.1\|1908391_1909471_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-99	51.4
SQH84429.1\|1909784_1910213_-	Uncharacterised protein	NA	NA	NA	NA
SQH84430.1\|1910228_1910744_-	Sigma-70, region 4	A0A2I7RQG9	Vibrio_phage	1.0e-06	37.8
SQH84431.1\|1910885_1911071_-	Protein of uncharacterised function (DUF1187)	A0A0U2QL97	Escherichia_phage	2.9e-12	59.6
SQH84432.1\|1911117_1911948_-	recombination and repair protein RecT	A0A1P8DTF2	Proteus_phage	7.7e-105	72.0
SQH84433.1\|1911940_1914631_-	exonuclease VIII	Q9QF34	Lambdoid_phage	1.1e-115	74.9
SQH84434.1\|1914771_1915107_-	Uncharacterised protein	NA	NA	NA	NA
SQH84435.1\|1915182_1915389_-	prophage Kil protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
SQH84436.1\|1915392_1915668_-	Uncharacterised protein	NA	NA	NA	NA
SQH84437.1\|1915917_1916142_-	Uncharacterised protein	NA	NA	NA	NA
SQH84438.1\|1916441_1916774_-	putative regulator	A0A0M4R5D1	Salmonella_phage	5.6e-06	32.7
SQH84439.1\|1916938_1917193_+	CRO	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
SQH84440.1\|1917179_1917674_+	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA
SQH84441.1\|1917718_1918594_+	DNA-binding protein	A0A088CD36	Shigella_phage	1.2e-31	58.5
SQH84442.1\|1918600_1919353_+	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	3.8e-103	76.5
SQH84443.1\|1919469_1919613_-	Uncharacterised protein	NA	NA	NA	NA
SQH84444.1\|1919774_1920332_-	Domain of uncharacterised function (DUF955)	NA	NA	NA	NA
SQH84445.1\|1920340_1920697_-	Helix-turn-helix domain	NA	NA	NA	NA
SQH84446.1\|1921519_1921768_+	putative bacteriophage cohesive ends	NA	NA	NA	NA
SQH84447.1\|1921831_1922431_+	IrsA	A0A0U2RT94	Escherichia_phage	1.2e-96	82.9
SQH84448.1\|1922427_1922622_+	Phage protein	S4TNP0	Salmonella_phage	7.9e-13	61.5
SQH84449.1\|1922603_1922912_+	Protein of uncharacterised function (DUF1364)	K7P7Q1	Enterobacteria_phage	5.8e-34	78.3
SQH84450.1\|1922921_1923284_+	phage antiterminator	Q777W5	Enterobacteria_phage	1.3e-53	80.8
SQH84451.1\|1923396_1925865_-	phage-like protein	NA	NA	NA	NA
SQH84452.1\|1926507_1926726_+	Uncharacterised protein	NA	NA	NA	NA
SQH84453.1\|1926737_1927277_-	Uncharacterised protein	NA	NA	NA	NA
SQH84454.1\|1927448_1927757_+\|holin	phage-holin analog protein	NA	NA	NA	NA
SQH84455.1\|1927734_1928223_+	lysozyme	M9P0E5	Enterobacteria_phage	1.3e-56	68.1
SQH84456.1\|1928207_1928684_+\|lysis	bacteriophage lysis protein	A0A0M4RD57	Salmonella_phage	5.1e-53	75.5
SQH84457.1\|1929193_1929985_+\|terminase	putative prophage terminase small subunit	A0A0P0ZG40	Escherichia_phage	7.7e-38	49.0
SQH84458.1\|1929965_1931678_+	Uncharacterised protein	A0A2R2Z350	Escherichia_phage	1.5e-291	86.2
SQH84459.1\|1931677_1933825_+	Uncharacterised protein	V5URY3	Shigella_phage	4.5e-306	81.4
SQH84460.1\|1933966_1934962_+	Uncharacterised protein	A0A2L1IV47	Escherichia_phage	1.6e-85	53.1
SQH84461.1\|1935015_1936230_+	Uncharacterised protein	A0A2L1IV46	Escherichia_phage	7.8e-207	85.4
SQH84462.1\|1936291_1936705_+	Uncharacterised protein	E7DYW8	Enterobacteria_phage	6.9e-30	58.9
SQH84463.1\|1936762_1937215_+	Uncharacterised protein	A0A2R2Z354	Escherichia_phage	5.0e-34	58.5
SQH84464.1\|1937198_1937762_+	Uncharacterised protein	A0A2R2Z349	Escherichia_phage	1.0e-47	53.5
SQH84465.1\|1937761_1938415_+	Uncharacterised protein	Q08J85	Stx2-converting_phage	8.8e-80	66.0
SQH84466.1\|1938411_1940133_+\|tail	Prophage tail fibre N-terminal	A0A088CC33	Shigella_phage	1.7e-37	70.6
SQH84467.1\|1940142_1940721_+\|tail	phage tail assembly protein	Q9LA61	Enterobacterial_phage	4.8e-45	48.1
SQH84468.1\|1940835_1941480_+\|tail	phage tail assembly protein	Q9LA61	Enterobacterial_phage	4.1e-45	46.7
SQH84469.1\|1941800_1942175_+	Uncharacterized protein y4iH Flags: Precursor	I1TQ41	Pseudomonas_phage	5.6e-15	41.3
SQH84470.1\|1942253_1942466_+	Uncharacterised protein	NA	NA	NA	NA
SQH84471.1\|1942763_1943198_+	Uncharacterised protein	NA	NA	NA	NA
SQH84472.1\|1944072_1945704_+	Uncharacterised protein	A0A088CBK0	Shigella_phage	1.9e-195	61.1
SQH84473.1\|1945700_1947263_+	host-specificity protein	A0A2L1IV54	Escherichia_phage	1.1e-125	59.9
SQH84474.1\|1947716_1948088_+	Uncharacterised protein	A0A088CC37	Shigella_phage	6.6e-48	73.8
SQH84475.1\|1948147_1948798_+	Uncharacterised protein	Q08J74	Stx2-converting_phage	2.4e-53	55.8
SQH84476.1\|1948810_1949206_+	Uncharacterised protein	G9L6M0	Escherichia_phage	2.9e-25	52.0
SQH84477.1\|1949218_1949470_+	proteobacterial sortase system OmpA family protein	NA	NA	NA	NA
SQH84478.1\|1949480_1950809_+	Uncharacterised protein	A0A0P0ZD72	Stx2-converting_phage	6.2e-40	31.8
SQH84479.1\|1950883_1959115_+	Uncharacterised protein	Q08J70	Stx2-converting_phage	0.0e+00	60.2
1955588:1955603	attL	NA	NA	NA	NA
SQH84480.1\|1959477_1961574_-	virulence protein	NA	NA	NA	NA
SQH84481.1\|1962797_1963223_-\|tail	phage tail-fiber asembly protein	A0A1B0VCD0	Salmonella_phage	3.7e-63	81.4
SQH84482.1\|1964171_1964549_+	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA
SQH84483.1\|1964600_1965734_+	cyclopropane-fatty-acyl-phospholipid synthase	A0A2K9L4K8	Tupanvirus	6.8e-80	43.5
SQH84484.1\|1966158_1966905_+	3-oxoacyl-ACP reductase	W8CYX9	Bacillus_phage	7.6e-11	48.1
SQH84485.1\|1967906_1968986_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.8e-101	52.8
SQH84486.1\|1968982_1970254_-	exonuclease VIII	Q9QF34	Lambdoid_phage	3.8e-55	66.7
SQH84487.1\|1970403_1970937_+	exported phage protein	A0A291LBG9	Klebsiella_phage	1.6e-10	42.4
SQH84488.1\|1971193_1971361_-	lytic enzyme	NA	NA	NA	NA
SQH84489.1\|1971663_1972155_+\|terminase	terminase	Q9EYD0	Enterobacteria_phage	7.6e-44	56.2
SQH84490.1\|1972141_1972321_+\|terminase	phage terminase large subunit	Q9EYD1	Enterobacteria_phage	2.7e-07	53.2
SQH84491.1\|1972340_1972715_+\|terminase	phage terminase large subunit	Q8VNN7	Enterobacteria_phage	2.6e-60	83.7
SQH84492.1\|1972707_1973304_+	Tail Fiber Protein	Q1MVL8	Enterobacteria_phage	6.0e-35	43.5
SQH84493.1\|1973489_1974044_+	Tail Fiber Protein	A0A0M3ULH6	Salmonella_phage	2.5e-35	77.8
SQH84494.1\|1976478_1976601_+	Uncharacterised protein	NA	NA	NA	NA
SQH84495.1\|1977049_1977664_-	disulfide bond formation protein	NA	NA	NA	NA
SQH84496.1\|1977673_1977832_-	membrane protein	NA	NA	NA	NA
SQH84497.1\|1977964_1978879_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA
SQH84498.1\|1979669_1980326_-	fimbriae usher protein	NA	NA	NA	NA
SQH84499.1\|1980405_1980744_+\|transposase	transposase	NA	NA	NA	NA
SQH84500.1\|1981834_1982254_+	acetyltransferase	NA	NA	NA	NA
SQH84501.1\|1982641_1983118_-	Uncharacterised protein	NA	NA	NA	NA
SQH84502.1\|1983445_1983841_-	protein ycgX	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
SQH84503.1\|1984524_1985247_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
SQH84504.1\|1985531_1985696_+	membrane protein	NA	NA	NA	NA
SQH84505.1\|1985686_1986571_+	Serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	1.5e-58	51.4
SQH84506.1\|1986589_1986781_-	putative secreted protein	NA	NA	NA	NA
SQH84507.1\|1986891_1987131_-	conserved domain protein	NA	NA	NA	NA
SQH84508.1\|1987245_1988787_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
SQH84509.1\|1988762_1991396_-	mce-related protein	NA	NA	NA	NA
SQH84510.1\|1991364_1992648_-	Paraquat-inducible protein A	NA	NA	NA	NA
SQH84511.1\|1992704_1993274_+	GAF domain-containing protein	NA	NA	NA	NA
SQH84512.1\|1993371_1994058_+	ProP effector	NA	NA	NA	NA
1993882:1993897	attR	NA	NA	NA	NA
SQH84513.1\|1994077_1996126_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	1.0e-86	33.5

DBSCAN-SWA_4

2190448 : 2198178

Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)

integrase,transposase,tRNA

attL 2195649:2195662|attR 2200406:2200419

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH84701.1\|2190448_2191822_+	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	32.0
SQH84702.1\|2191865_2192801_-\|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	A0A0U2S5Z2	Escherichia_phage	9.4e-144	97.3
SQH84703.1\|2193476_2195309_+	T3SS secreted effector EspN-like protein	A0A0N7KZG3	Stx2-converting_phage	2.5e-47	34.7
SQH84704.1\|2195583_2195922_+	multidrug transporter	NA	NA	NA	NA
2195649:2195662	attL	NA	NA	NA	NA
SQH84705.1\|2195974_2196409_-	Universal stress protein F	A0A1W6JNV4	Morganella_phage	9.4e-30	52.1
SQH84706.1\|2196922_2197324_+\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH84707.1\|2197494_2198178_+\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
2200406:2200419	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2797476 : 2874529

Bacillus_phage(15.38%)

integrase,protease,transposase,tRNA

attL 2848359:2848379|attR 2866398:2866418

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH85284.1\|2797476_2798877_+\|tRNA	asparaginyl-tRNA synthetase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
SQH85285.1\|2799483_2800575_+	outer membrane protein 1a (IA;b;f), porin	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
SQH85286.1\|2800759_2801950_+	aspartate aminotransferase	NA	NA	NA	NA
SQH85287.1\|2802011_2802659_-	putative metal-binding enzyme YcbL -like protein	NA	NA	NA	NA
SQH85288.1\|2802686_2803235_-	exported protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
SQH85289.1\|2803494_2805342_-	L,D-transpeptidase YcbB	NA	NA	NA	NA
SQH85290.1\|2805686_2810153_-	cell division protein	NA	NA	NA	NA
SQH85291.1\|2810152_2810857_-	condesin subunit E	NA	NA	NA	NA
SQH85292.1\|2810837_2812160_-	killing factor KicB	NA	NA	NA	NA
SQH85293.1\|2812152_2812956_-	SmtA protein	NA	NA	NA	NA
SQH85294.1\|2813091_2813868_+	Membrane Protein Functionally coupled to the MukBEF Chromosome Partitioning Mechanism	NA	NA	NA	NA
SQH85295.1\|2813847_2814741_-	Uncharacterised protein	NA	NA	NA	NA
SQH85296.1\|2814951_2815698_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
SQH85297.1\|2815694_2815877_-	Protein YcaR in KDO2-Lipid Abiosynthesis cluster	NA	NA	NA	NA
SQH85298.1\|2815928_2817161_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQH85299.1\|2817204_2818182_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
SQH85300.1\|2818178_2819927_-	transport ATP-binding protein MsbA	W8CYL7	Bacillus_phage	3.2e-60	30.5
SQH85301.1\|2819963_2822228_-	ComEC family competence protein	Q332C0	Clostridium_botulinum_C_phage	8.8e-10	22.5
SQH85302.1\|2822404_2823088_-\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
SQH85303.1\|2823258_2823660_-\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH85304.1\|2823772_2824057_-	integration host factor beta-subunit	A7KV42	Bacillus_phage	4.1e-10	40.2
SQH85305.1\|2824212_2825886_-	30S ribosomal protein S1	NA	NA	NA	NA
SQH85306.1\|2825999_2826683_-	cytidylate kinase	NA	NA	NA	NA
SQH85307.1\|2826855_2827617_-	lipoprotein	NA	NA	NA	NA
SQH85308.1\|2827760_2829044_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
SQH85309.1\|2829114_2830203_-	phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	2.1e-78	46.8
SQH85310.1\|2830388_2831081_-	Putative inner membrane protein	NA	NA	NA	NA
SQH85311.1\|2831217_2832978_+	UPF0142 protein	NA	NA	NA	NA
SQH85312.1\|2833382_2834240_+	formate transporter	NA	NA	NA	NA
SQH85313.1\|2834299_2836582_+	formate acetyltransferase 1	A0A2P0VNR5	Tetraselmis_virus	1.1e-161	42.0
SQH85314.1\|2836653_2837613_-	pathogenicity island 1 protein SopD2	NA	NA	NA	NA
SQH85315.1\|2837902_2838070_+	putative cytoplasmic protein	NA	NA	NA	NA
SQH85316.1\|2838188_2838986_+	pyruvate formate-lyase activating enzyme	A0A2P0VNQ0	Tetraselmis_virus	2.7e-22	26.5
SQH85317.1\|2839277_2840699_-	transport protein	NA	NA	NA	NA
SQH85318.1\|2840916_2842065_-	transport protein	NA	NA	NA	NA
SQH85319.1\|2842414_2843278_-	anaerobic dimethyl sulfoxide reductase subunit C	NA	NA	NA	NA
SQH85320.1\|2843279_2843897_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.3e-76	59.6
SQH85321.1\|2843907_2846352_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.4e-223	50.5
SQH85322.1\|2846589_2847882_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.9
SQH85323.1\|2848140_2849484_-	Holliday junction DNA helicase	G3MBE0	Bacillus_virus	1.3e-80	40.9
2848359:2848379	attL	NA	NA	NA	NA
SQH85324.1\|2849493_2850105_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
SQH85325.1\|2850247_2854285_-	cell division protein FtsK	S5VNE3	Mycobacterium_phage	2.9e-88	49.5
SQH85326.1\|2854419_2854914_-	leucine-responsive regulatory protein	NA	NA	NA	NA
SQH85327.1\|2855460_2856429_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	6.5e-63	45.5
SQH85328.1\|2856543_2858310_+	cysteine/glutathione ABC transporter membrane /ATP-binding component	W8CYL7	Bacillus_phage	6.0e-22	25.1
SQH85329.1\|2858310_2860032_+	transport ATP-binding protein CydC	W8CYL7	Bacillus_phage	1.9e-12	23.3
SQH85330.1\|2860076_2860781_+\|tRNA	leucyl/phenylalanyl-tRNA-protein transferase	NA	NA	NA	NA
SQH85331.1\|2861092_2861311_+	initiation factor IF-1	NA	NA	NA	NA
SQH85332.1\|2861401_2862313_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQH85333.1\|2862421_2863282_+	pirin-like protein	NA	NA	NA	NA
SQH85334.1\|2863301_2863979_+	Isochorismatase family protein	NA	NA	NA	NA
SQH85335.1\|2864316_2864718_+\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH85336.1\|2864798_2865572_+\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.3e-18	34.5
SQH85337.1\|2865712_2865910_+	Uncharacterised protein	NA	NA	NA	NA
SQH85338.1\|2866104_2866566_+\|transposase	transposase IS1113	F6MIM4	Haemophilus_phage	6.3e-08	64.7
2866398:2866418	attR	NA	NA	NA	NA
SQH85339.1\|2866699_2866972_+\|transposase	transposase	A0A218MNI5	uncultured_virus	2.6e-17	62.7
SQH85340.1\|2867185_2867665_+	type V secretory pathway, adhesin AidA	NA	NA	NA	NA
SQH85341.1\|2868165_2870442_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
SQH85342.1\|2870472_2870793_-\|protease	ATP-dependent clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
SQH85343.1\|2871116_2871338_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
SQH85344.1\|2871467_2873414_-	ABC transporter	G9BWD6	Planktothrix_phage	9.1e-40	42.3
SQH85345.1\|2873410_2874529_-	Macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_6

3236197 : 3295316

Bacillus_phage(25.0%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH85680.1\|3236197_3237115_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
SQH85681.1\|3237111_3237564_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
SQH85682.1\|3237564_3237981_-	copper efflux regulator	NA	NA	NA	NA
SQH85683.1\|3238090_3240592_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	6.7e-112	37.2
SQH85684.1\|3240744_3241320_+	secreted protein	NA	NA	NA	NA
SQH85685.1\|3242652_3243132_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
SQH85686.1\|3243248_3244901_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
SQH85687.1\|3245073_3246294_+	fosmidomycin resistance protein	NA	NA	NA	NA
SQH85688.1\|3246305_3246431_-	Uncharacterised protein	NA	NA	NA	NA
SQH85689.1\|3246508_3248185_+	transport protein	NA	NA	NA	NA
SQH85690.1\|3248233_3249538_-	inosine/guanosine kinase	NA	NA	NA	NA
SQH85691.1\|3249690_3250662_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	6.6e-15	27.4
SQH85692.1\|3250658_3251621_-	ferrochelatase	NA	NA	NA	NA
SQH85693.1\|3251848_3252493_-	adenylate kinase	NA	NA	NA	NA
SQH85694.1\|3252734_3254609_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.7e-115	36.9
SQH85695.1\|3254719_3255325_-	recombination protein RecR	NA	NA	NA	NA
SQH85696.1\|3255324_3255654_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQH85697.1\|3257741_3258293_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
SQH85698.1\|3258445_3258823_-	Inner membrane protein YbaN	NA	NA	NA	NA
SQH85699.1\|3258903_3259419_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
SQH85700.1\|3259432_3259600_+	Putative inner membrane protein	NA	NA	NA	NA
SQH85701.1\|3259669_3260593_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	2.1e-63	51.2
SQH85702.1\|3260634_3263997_-	integral membrane protein AefA	NA	NA	NA	NA
SQH85703.1\|3264115_3264769_-	potential acrAB operon repressor	NA	NA	NA	NA
SQH85704.1\|3264910_3266104_+	acriflavin resistance protein A	NA	NA	NA	NA
SQH85705.1\|3266126_3269276_+	acriflavin resistance protein B	NA	NA	NA	NA
SQH85706.1\|3269771_3270146_+	Hha toxicity attenuator	NA	NA	NA	NA
SQH85707.1\|3270173_3270392_+	hemolysin expression modulating protein	NA	NA	NA	NA
SQH85708.1\|3270569_3271121_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQH85709.1\|3271238_3271709_+	Putative inner membrane protein	NA	NA	NA	NA
SQH85710.1\|3271764_3271905_-	LSU ribosomal protein L36p	NA	NA	NA	NA
SQH85711.1\|3271910_3272171_-	50S ribosomal protein L31	NA	NA	NA	NA
SQH85712.1\|3272395_3273946_+	Uncharacterized protein ylaB	NA	NA	NA	NA
SQH85713.1\|3274254_3274566_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
SQH85714.1\|3274598_3275168_-	lipoprotein	NA	NA	NA	NA
SQH85715.1\|3275382_3276243_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQH85716.1\|3276342_3277629_-	ammonium transporter	NA	NA	NA	NA
SQH85717.1\|3277660_3277999_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQH85718.1\|3278211_3279993_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	5.4e-39	26.7
SQH85719.1\|3279985_3281758_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
SQH85720.1\|3281798_3282257_-	transcriptional regulator	NA	NA	NA	NA
SQH85721.1\|3282369_3283425_+	lyase	NA	NA	NA	NA
SQH85722.1\|3283474_3284293_-	HMP-PP phosphatase	NA	NA	NA	NA
SQH85723.1\|3284393_3286088_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQH85724.1\|3286158_3286854_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.3e-88	68.4
SQH85725.1\|3286961_3287360_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
SQH85726.1\|3287463_3287838_-	competence protein ComEA	NA	NA	NA	NA
SQH85727.1\|3287987_3289859_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQH85728.1\|3290149_3290422_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
SQH85729.1\|3290630_3292985_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5
SQH85730.1\|3293170_3294442_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-131	56.5
SQH85731.1\|3294692_3295316_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

DBSCAN-SWA_7

4310661 : 4345149

Cronobacter_phage(63.33%)

plate,holin,capsid,terminase,integrase,tail,portal

attL 4309953:4309997|attR 4340524:4340568

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4309953:4309997	attL	NA	NA	NA	NA
SQH86621.1\|4310661_4312386_-	phage protein	F1BUJ7	Cronobacter_phage	1.3e-175	63.0
SQH86622.1\|4312393_4312936_-	phage protein	F1BUJ9	Cronobacter_phage	7.1e-43	56.0
SQH86623.1\|4312907_4313630_-	phage protein	F1BUK1	Cronobacter_phage	1.5e-40	40.3
SQH86624.1\|4314206_4316153_-\|tail	Gifsy-2 prophage tail fiber protein	F1BUK3	Cronobacter_phage	1.7e-123	68.1
SQH86625.1\|4316164_4316758_-\|tail	Bacteriophage P2-related tail formation protein	F1BUK5	Cronobacter_phage	4.7e-72	63.8
SQH86626.1\|4316750_4317935_-\|plate	Phage baseplate	F1BUK6	Cronobacter_phage	4.0e-155	69.5
SQH86627.1\|4317927_4318263_-	phage protein	F1BUK8	Cronobacter_phage	1.2e-29	58.7
SQH86628.1\|4318259_4320374_-\|tail	phage tail tape measure protein, TP901 family, core region	F1BUK9	Cronobacter_phage	2.9e-140	41.2
SQH86629.1\|4320563_4320833_-	putative phage gene	NA	NA	NA	NA
SQH86630.1\|4320935_4321319_-	putative phage-related protein	F1BUL2	Cronobacter_phage	1.2e-12	38.5
SQH86631.1\|4321318_4321657_-	hypothetical phage-related protein	F1BUL3	Cronobacter_phage	8.9e-44	84.2
SQH86632.1\|4321643_4321955_-\|holin	phage holin protein	NA	NA	NA	NA
SQH86633.1\|4321959_4322415_-	phage protein	A5X9I1	Aeromonas_virus	1.5e-38	52.3
SQH86634.1\|4322418_4323561_-	Topoisomerase IA	F1BUL5	Cronobacter_phage	1.1e-130	61.6
SQH86635.1\|4323563_4324259_-	Phage virion morphogenesis protein	F1BUL6	Cronobacter_phage	6.7e-70	58.4
SQH86636.1\|4324255_4324732_-	putative phage gene	NA	NA	NA	NA
SQH86637.1\|4324728_4325202_-	putative phage gene	F1BUL8	Cronobacter_phage	1.2e-30	54.3
SQH86638.1\|4325304_4326006_-\|terminase	phage terminase subunit	F1BUM0	Cronobacter_phage	2.0e-69	57.1
SQH86639.1\|4326008_4327031_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	6.6e-98	55.7
SQH86640.1\|4327059_4328121_-\|capsid	putative capsid scaffolding protein	F1BUM4	Cronobacter_phage	2.9e-32	44.3
SQH86641.1\|4328298_4330110_+\|terminase	Phage terminase ATPase subunit	F1BUM5	Cronobacter_phage	1.3e-184	54.4
SQH86642.1\|4330106_4331168_+\|portal	phage portal protein, pbsx family	F1BUM7	Cronobacter_phage	8.8e-122	60.7
SQH86643.1\|4331164_4331482_+	zinc-finger protein	F1BUM8	Cronobacter_phage	1.8e-25	55.0
SQH86644.1\|4331512_4332133_-	Uncharacterised protein	NA	NA	NA	NA
SQH86645.1\|4332125_4333175_-	Protein of uncharacterised function DUF262	A0A0R6PKN1	Moraxella_phage	5.4e-23	32.5
SQH86646.1\|4333174_4333291_-	Uncharacterised protein	NA	NA	NA	NA
SQH86647.1\|4333397_4336034_-	possible endonuclease	E5G6L9	Salmonella_phage	3.5e-127	37.9
SQH86648.1\|4336048_4337053_-	Methyl-directed repair DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.1e-129	65.9
SQH86649.1\|4337123_4337513_-	Uncharacterised protein	NA	NA	NA	NA
SQH86650.1\|4337528_4337750_-	Uncharacterised protein	A0A0M4S6M9	Salmonella_phage	2.2e-11	50.0
SQH86651.1\|4337886_4338117_+	Uncharacterised protein	NA	NA	NA	NA
SQH86652.1\|4338117_4338582_-	Uncharacterised protein	NA	NA	NA	NA
SQH86653.1\|4338591_4338864_-	Cox protein	Q1JS20	Enterobacteria_phage	1.3e-40	85.6
SQH86654.1\|4339059_4339353_+	phage repressor protein c	Q1JS37	Enterobacteria_phage	1.1e-34	75.3
SQH86655.1\|4339422_4340403_+\|integrase	Puataive integrase	Q7Y4C5	Escherichia_virus	1.2e-160	85.0
SQH86656.1\|4340592_4341093_-	extracytoplasmic stress protein for protein-mediated toxicities	NA	NA	NA	NA
4340524:4340568	attR	NA	NA	NA	NA
SQH86657.1\|4341243_4341942_+	two-component response regulatory protein	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
SQH86658.1\|4341938_4343312_+	two-component sensor kinase protein	W8CYF6	Bacillus_phage	7.2e-15	25.6
SQH86659.1\|4343362_4343758_-	membrane protein	NA	NA	NA	NA
SQH86660.1\|4343769_4344459_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
SQH86661.1\|4344528_4345149_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483455

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection