CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483457	Salmonella enterica subsp. enterica strain NCTC9787 genome assembly, chromosome: 1	2 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT,DEDDh,DinG	0	5	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483457_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483457_1

919029-919362

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCGC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

5 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of LS483457_1

>merge|LS483457|1|919029-919362|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAGAAAAGTTTGTTTAGGCAATCAAGCCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTACAGCCAGTTCATGGAAAGTTTCAGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCCAAAACATCTTTCCCTGGTTCCTCTCAGGTGTTCGCCGCGCCAGCGGGGATAAACCGGGGATCGCGTTGGCGGTCGCATCCGTTGCCGTGTGTTACCCGCGTCAGCGGGGATAAACCGTACCAACAATTCAGCGTTACGCCAACGGTAACGTGTTCCCCGCGCCAACAAGGATAGCCGT

>LS483457|1|1|919029-919180|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGC	CCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCGC	GTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCGA

>LS483457|1|1|919029-919362|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>LS483457|1|1|919029-919362|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483457.1\|SQI01254.1\|926948_929612_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483457.1\|SQI01249.1\|920344_920707_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483457.1\|SQI01248.1\|919459_920257_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483457.1\|SQI01253.1\|925551_926505_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483457.1\|SQI01257.1\|931738_932797_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LS483457.1\|SQI01250.1\|921142_922942_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483457.1\|SQI01244.1\|914906_916544_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483457.1\|SQI01243.1\|913878_914679_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483457.1\|SQI01241.1\|912559_912847_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	unknown	unknown	gnl\|CDD\|226136
LS483457.1\|SQI01251.1\|922941_924654_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483457.1\|SQI01242.1\|912812_913109_+\|ParE-toxin-protein	unknown	unknown	gnl\|CDD\|226194
LS483457.1\|SQI01245.1\|916626_917925_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483457.1\|SQI01240.1\|910171_912406_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LS483457.1\|SQI01239.1\|908824_910120_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|237291
LS483457.1\|SQI01255.1\|929623_931180_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483457.1\|SQI01252.1\|924729_925464_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483457.1\|SQI01246.1\|918060_918732_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483457.1\|SQI01247.1\|918762_918909_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483457.1\|SQI01238.1\|906010_908767_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	unknown	unknown	gnl\|CDD\|236848
LS483457.1\|SQI01256.1\|931176_931725_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862

Protein	Function_ID	Function_description	E-value
LS483457.1\|SQI01254.1\|926948_929612_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483457.1\|SQI01249.1\|920344_920707_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
LS483457.1\|SQI01248.1\|919459_920257_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	6.57148e-101
LS483457.1\|SQI01253.1\|925551_926505_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483457.1\|SQI01257.1\|931738_932797_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.0955e-137
LS483457.1\|SQI01250.1\|921142_922942_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483457.1\|SQI01244.1\|914906_916544_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483457.1\|SQI01243.1\|913878_914679_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
LS483457.1\|SQI01241.1\|912559_912847_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	4.92035e-18
LS483457.1\|SQI01242.1\|912812_913109_+\|ParE-toxin-protein	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	6.68104e-12
LS483457.1\|SQI01245.1\|916626_917925_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483457.1\|SQI01240.1\|910171_912406_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LS483457.1\|SQI01239.1\|908824_910120_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LS483457.1\|SQI01255.1\|929623_931180_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LS483457.1\|SQI01252.1\|924729_925464_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.1022e-138
LS483457.1\|SQI01246.1\|918060_918732_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
LS483457.1\|SQI01251.1\|922941_924654_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483457.1\|SQI01238.1\|906010_908767_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
LS483457.1\|SQI01256.1\|931176_931725_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.52171e-33

>LS483457.1|SQI01247.1|918762_918909_+|Uncharacterised-protein
MPSVTHPLPCIVYFLYVNFDECIKALINFSIAMHGSRYFGKFKEKIIL
>LS483457.1|SQI01246.1|918060_918732_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483457.1|SQI01245.1|916626_917925_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483457.1|SQI01244.1|914906_916544_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>LS483457.1|SQI01243.1|913878_914679_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483457.1|SQI01242.1|912812_913109_+|ParE-toxin-protein
MITVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>LS483457.1|SQI01241.1|912559_912847_+|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain
MARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDDNGKINAKGQ
>LS483457.1|SQI01240.1|910171_912406_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>LS483457.1|SQI01239.1|908824_910120_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSITLQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCLPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>LS483457.1|SQI01238.1|906010_908767_-|BarA-sensory-histidine-kinase-(VarS-/-GacS)
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>LS483457.1|SQI01248.1|919459_920257_+|beta-lactamase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKQIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483457.1|SQI01249.1|920344_920707_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>LS483457.1|SQI01250.1|921142_922942_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQQYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>LS483457.1|SQI01251.1|922941_924654_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDQLIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483457.1|SQI01252.1|924729_925464_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483457.1|SQI01253.1|925551_926505_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGSWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEANVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483457.1|SQI01254.1|926948_929612_+|helicase
MSIYHYWGKSRRGEIDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNVFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPESWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQAFAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACEAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKGEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>LS483457.1|SQI01255.1|929623_931180_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDVADLPLSDQCDAAVFPWLAATRTSEQANAVTTPDQVDKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTAKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNHTEANYESPAQVVKVFNARRLRDVNVGVWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>LS483457.1|SQI01256.1|931176_931725_+|transposase
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>LS483457.1|SQI01257.1|931738_932797_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILVESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA

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Crispr_ID: LS483457_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483457_2

935493-935887

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LS483457_2

>merge|LS483457|2|935493-935887|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGATTTGTTTAGCCGTGTAATTAAAGTTAAACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGTAGGCGGTGATTTAGGGGAGGAATTTATGTGTTCCCCGCGCCAGCGGGGATAAACCGTAGATTATTTTTATCACGATACTAATGATAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAGGGCGACGTCATCAACATGAAAAAAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCGGTTTCACCGCTGATAGACACCTTCACCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAGGCCGACGGTGTGTACACCTCTAAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483457|2|2|935493-935826|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTGTTTAGCCGTGTAATTAAAGTTAAACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTAGGCGGTGATTTAGGGGAGGAATTTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGATTATTTTTATCACGATACTAATGATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGGCGACGTCATCAACATGAAAAAAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCGGTTTCACCGCTGATAGACACCTTCACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LS483457|2|2|935493-935887|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTGTTTAGCCGTGTAATTAAAGTTAAACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTAGGCGGTGATTTAGGGGAGGAATTTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGATTATTTTTATCACGATACTAATGATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGGCGACGTCATCAACATGAAAAAAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCGGTTTCACCGCTGATAGACACCTTCACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAGGCCGACGGTGTGTACACCTCTAAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483457|2|2|935493-935887|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTGTTTAGCCGTGTAATTAAAGTTAAACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGTAGGCGGTGATTTAGGGGAGGAATTTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAGATTATTTTTATCACGATACTAATGATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGGCGACGTCATCAACATGAAAAAAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCGGTTTCACCGCTGATAGACACCTTCACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAGGCCGACGGTGTGTACACCTCTAAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483457.1\|SQI01254.1\|926948_929612_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483457.1\|SQI01262.1\|935901_936948_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483457.1\|SQI01268.1\|941042_941753_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LS483457.1\|SQI01257.1\|931738_932797_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LS483457.1\|SQI01258.1\|932807_933554_+\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LS483457.1\|SQI01261.1\|935102_935396_+\|ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
LS483457.1\|SQI01259.1\|933535_934186_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LS483457.1\|SQI01269.1\|941752_942232_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LS483457.1\|SQI01265.1\|939542_940148_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LS483457.1\|SQI01271.1\|943258_944020_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LS483457.1\|SQI01253.1\|925551_926505_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483457.1\|SQI01267.1\|940712_941024_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LS483457.1\|SQI01260.1\|934182_935103_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LS483457.1\|SQI01263.1\|937198_938107_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483457.1\|SQI01255.1\|929623_931180_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483457.1\|SQI01252.1\|924729_925464_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483457.1\|SQI01266.1\|940198_940522_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LS483457.1\|SQI01264.1\|938116_939556_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483457.1\|SQI01270.1\|942228_943278_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LS483457.1\|SQI01256.1\|931176_931725_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862

Protein	Function_ID	Function_description	E-value
LS483457.1\|SQI01254.1\|926948_929612_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483457.1\|SQI01262.1\|935901_936948_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483457.1\|SQI01268.1\|941042_941753_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
LS483457.1\|SQI01257.1\|931738_932797_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.0955e-137
LS483457.1\|SQI01258.1\|932807_933554_+\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	6.64047e-49
LS483457.1\|SQI01261.1\|935102_935396_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
LS483457.1\|SQI01259.1\|933535_934186_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	8.26613e-74
LS483457.1\|SQI01269.1\|941752_942232_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	8.1372e-104
LS483457.1\|SQI01265.1\|939542_940148_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LS483457.1\|SQI01271.1\|943258_944020_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
LS483457.1\|SQI01253.1\|925551_926505_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483457.1\|SQI01267.1\|940712_941024_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LS483457.1\|SQI01260.1\|934182_935103_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
LS483457.1\|SQI01263.1\|937198_938107_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483457.1\|SQI01255.1\|929623_931180_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LS483457.1\|SQI01252.1\|924729_925464_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.1022e-138
LS483457.1\|SQI01266.1\|940198_940522_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
LS483457.1\|SQI01264.1\|938116_939556_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483457.1\|SQI01270.1\|942228_943278_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LS483457.1\|SQI01256.1\|931176_931725_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.52171e-33

>LS483457.1|SQI01261.1|935102_935396_+|ssRNA-endonuclease
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>LS483457.1|SQI01260.1|934182_935103_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>LS483457.1|SQI01259.1|933535_934186_+|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLVRQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVLNDPVLFLRRLAQGYGKSRAFGCGMMMIKPGDDA
>LS483457.1|SQI01258.1|932807_933554_+|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKVRYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATSDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGRAPDALREAYRQYQDKFNALRLPLPKLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLSKEDACISQE
>LS483457.1|SQI01257.1|931738_932797_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILVESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>LS483457.1|SQI01256.1|931176_931725_+|transposase
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>LS483457.1|SQI01255.1|929623_931180_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDVADLPLSDQCDAAVFPWLAATRTSEQANAVTTPDQVDKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTAKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNHTEANYESPAQVVKVFNARRLRDVNVGVWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>LS483457.1|SQI01254.1|926948_929612_+|helicase
MSIYHYWGKSRRGEIDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNVFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPESWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQAFAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACEAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKGEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>LS483457.1|SQI01253.1|925551_926505_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGSWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEANVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483457.1|SQI01252.1|924729_925464_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483457.1|SQI01262.1|935901_936948_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPAPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483457.1|SQI01263.1|937198_938107_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483457.1|SQI01264.1|938116_939556_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LS483457.1|SQI01265.1|939542_940148_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LS483457.1|SQI01266.1|940198_940522_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LS483457.1|SQI01267.1|940712_941024_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LS483457.1|SQI01268.1|941042_941753_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LS483457.1|SQI01269.1|941752_942232_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTEPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LS483457.1|SQI01270.1|942228_943278_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LS483457.1|SQI01271.1|943258_944020_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483457_1	1.6\|919241\|32\|LS483457\|CRISPRCasFinder,CRT	919241-919272	32	NZ_CP041606	Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence	6595-6626	6	0.812
LS483457_1	1.6\|919241\|32\|LS483457\|CRISPRCasFinder,CRT	919241-919272	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
LS483457_1	1.1\|919059\|31\|LS483457\|PILER-CR	919059-919089	31	MK605244	Nodularia phage vB_NspS-kac65v162, complete genome	141954-141984	8	0.742
LS483457_1	1.1\|919059\|31\|LS483457\|PILER-CR	919059-919089	31	MK605242	Nodularia phage vB_NspS-kac65v151, complete genome	141539-141569	8	0.742
LS483457_1	1.1\|919059\|31\|LS483457\|PILER-CR	919059-919089	31	MK605243	Nodularia phage vB_NspS-kac65v161, complete genome	141656-141686	8	0.742
LS483457_1	1.3\|919058\|32\|LS483457\|CRISPRCasFinder,CRT	919058-919089	32	MK605244	Nodularia phage vB_NspS-kac65v162, complete genome	141954-141985	8	0.75
LS483457_1	1.3\|919058\|32\|LS483457\|CRISPRCasFinder,CRT	919058-919089	32	MK605242	Nodularia phage vB_NspS-kac65v151, complete genome	141539-141570	8	0.75
LS483457_1	1.3\|919058\|32\|LS483457\|CRISPRCasFinder,CRT	919058-919089	32	MK605243	Nodularia phage vB_NspS-kac65v161, complete genome	141656-141687	8	0.75
LS483457_2	2.5\|935766\|32\|LS483457\|PILER-CR,CRISPRCasFinder,CRT	935766-935797	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	362060-362091	8	0.75
LS483457_1	1.6\|919241\|32\|LS483457\|CRISPRCasFinder,CRT	919241-919272	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	20537-20568	9	0.719
LS483457_1	1.6\|919241\|32\|LS483457\|CRISPRCasFinder,CRT	919241-919272	32	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	222471-222502	9	0.719
LS483457_1	1.6\|919241\|32\|LS483457\|CRISPRCasFinder,CRT	919241-919272	32	MT075871	Klebsiella phage vB_KleS-HSE3, complete genome	29026-29057	9	0.719
LS483457_1	1.6\|919241\|32\|LS483457\|CRISPRCasFinder,CRT	919241-919272	32	MN694675	Marine virus AFVG_250M635, complete genome	6608-6639	10	0.688
LS483457_2	2.3\|935644\|32\|LS483457\|PILER-CR,CRISPRCasFinder,CRT	935644-935675	32	MN270267	Streptococcus phage phi-SsuFJZZ39_rum, complete genome	54248-54279	10	0.688
LS483457_2	2.3\|935644\|32\|LS483457\|PILER-CR,CRISPRCasFinder,CRT	935644-935675	32	MN270266	Streptococcus phage phi-SsuFJZZ32_rum, complete genome	54248-54279	10	0.688

1. spacer 1.6|919241|32|LS483457|CRISPRCasFinder,CRT matches to NZ_CP041606 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcgttggaggtcgcctccgacgactt	Protospacer
************* ****** **** .* * *

2. spacer 1.6|919241|32|LS483457|CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgttggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

3. spacer 1.1|919059|31|LS483457|PILER-CR matches to MK605244 (Nodularia phage vB_NspS-kac65v162, complete genome) position: , mismatch: 8, identity: 0.742

ccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
cagaaggtgtttgtataggcaaacaagcccc	Protospacer
* ..*.. ****** ******* ********

4. spacer 1.1|919059|31|LS483457|PILER-CR matches to MK605242 (Nodularia phage vB_NspS-kac65v151, complete genome) position: , mismatch: 8, identity: 0.742

ccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
cagaaggtgtttgtataggcaaacaagcccc	Protospacer
* ..*.. ****** ******* ********

5. spacer 1.1|919059|31|LS483457|PILER-CR matches to MK605243 (Nodularia phage vB_NspS-kac65v161, complete genome) position: , mismatch: 8, identity: 0.742

ccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
cagaaggtgtttgtataggcaaacaagcccc	Protospacer
* ..*.. ****** ******* ********

6. spacer 1.3|919058|32|LS483457|CRISPRCasFinder,CRT matches to MK605244 (Nodularia phage vB_NspS-kac65v162, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

7. spacer 1.3|919058|32|LS483457|CRISPRCasFinder,CRT matches to MK605242 (Nodularia phage vB_NspS-kac65v151, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

8. spacer 1.3|919058|32|LS483457|CRISPRCasFinder,CRT matches to MK605243 (Nodularia phage vB_NspS-kac65v161, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

9. spacer 2.5|935766|32|LS483457|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gccggtttcaccgctgatagacaccttcaccg	CRISPR spacer
ggtgctgcaaccgctgatcgacaccatcaccg	Protospacer
* .* * . ********* ****** ******

10. spacer 1.6|919241|32|LS483457|CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcattgccggtcgcatcgatgacgac	Protospacer
********.*** ********** .* .* ..

11. spacer 1.6|919241|32|LS483457|CRISPRCasFinder,CRT matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gtgatcgccttgccggtcgcatccgccgaaac	Protospacer
* ****** *** ************..*  ..

12. spacer 1.6|919241|32|LS483457|CRISPRCasFinder,CRT matches to MT075871 (Klebsiella phage vB_KleS-HSE3, complete genome) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcgtaggcggccgcatcgactacaag	Protospacer
********** *****.****** ..*.* .

13. spacer 1.6|919241|32|LS483457|CRISPRCasFinder,CRT matches to MN694675 (Marine virus AFVG_250M635, complete genome) position: , mismatch: 10, identity: 0.688

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
tttgctgaattggcggacgcatccattgccgt	Protospacer
   ...* .******* *******.*******

14. spacer 2.3|935644|32|LS483457|PILER-CR,CRISPRCasFinder,CRT matches to MN270267 (Streptococcus phage phi-SsuFJZZ39_rum, complete genome) position: , mismatch: 10, identity: 0.688

tagattatttttatcacgatactaatgataaa	CRISPR spacer
cttcaaatttttatcacgatataaatgatatt	Protospacer
.     ***************. *******

15. spacer 2.3|935644|32|LS483457|PILER-CR,CRISPRCasFinder,CRT matches to MN270266 (Streptococcus phage phi-SsuFJZZ32_rum, complete genome) position: , mismatch: 10, identity: 0.688

tagattatttttatcacgatactaatgataaa	CRISPR spacer
cttcaaatttttatcacgatataaatgatatt	Protospacer
.     ***************. *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1099828 : 1105562

Enterobacteria_phage(50.0%)

integrase

attL 1102690:1102703|attR 1105764:1105777

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI01425.1\|1099828_1099969_-	bacteriophage P4 DNA primase	Q7M2A8	Enterobacteria_phage	9.1e-11	78.6
SQI01426.1\|1100009_1100591_-	bacteriophage P4 DNA primase	Q7M2A8	Enterobacteria_phage	5.1e-79	90.9
SQI01427.1\|1100809_1101262_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.3e-39	60.3
SQI01428.1\|1101635_1102823_+	Uncharacterized conserved protein	A0A0R6PKN1	Moraxella_phage	1.2e-10	25.7
1102690:1102703	attL	NA	NA	NA	NA
SQI01429.1\|1102833_1103367_+	Uncharacterised protein	NA	NA	NA	NA
SQI01430.1\|1103392_1104589_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	3.8e-105	49.4
SQI01431.1\|1105361_1105562_+	phage regulatory protein	A0A2H4J8C8	uncultured_Caudovirales_phage	1.1e-06	36.4
1105764:1105777	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1654859 : 1664031

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI01914.1\|1654859_1655807_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.0
SQI01915.1\|1655790_1656522_+	putative permease transmembrane component	NA	NA	NA	NA
SQI01916.1\|1656502_1656610_-	membrane protein	NA	NA	NA	NA
SQI01917.1\|1656669_1657401_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
SQI01918.1\|1657623_1659309_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
SQI01919.1\|1659305_1660025_+	two-component system response regulator	NA	NA	NA	NA
SQI01920.1\|1660071_1660539_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	2.0e-73	89.7
SQI01921.1\|1660595_1661126_-	lipoprotein	NA	NA	NA	NA
SQI01922.1\|1661297_1661756_-	lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
SQI01923.1\|1661997_1664031_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1900505 : 1950289

Enterobacteria_phage(15.79%)

tRNA,integrase,terminase,transposase

attL 1929629:1929643|attR 1940528:1940542

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI02289.1\|1900505_1902239_-\|tRNA	arginyl-tRNA synthetase	A0A2K9L6Z2	Tupanvirus	4.9e-85	33.4
SQI02290.1\|1902475_1903045_+	Protein yecM	NA	NA	NA	NA
SQI02291.1\|1903064_1903811_+	copper homeostasis protein CutC	NA	NA	NA	NA
SQI02292.1\|1904046_1905018_-\|tRNA	tRNA (5-methoxyuridine) 34 synthase	NA	NA	NA	NA
SQI02294.1\|1905014_1905758_-\|tRNA	tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	F5B419	Synechococcus_phage	5.4e-25	30.9
SQI02295.1\|1905798_1906194_-	membrane protein	NA	NA	NA	NA
SQI02296.1\|1906246_1907065_-	Protein of uncharacterised function DUF72	Q859D1	Escherichia_coli_phage	4.5e-57	80.3
SQI02297.1\|1907061_1907628_-	putative isochorismatase hydrolase	NA	NA	NA	NA
SQI02298.1\|1907952_1909725_+\|tRNA	aspartyl-tRNA synthetase	NA	NA	NA	NA
SQI02300.1\|1909827_1910280_+	dATP pyrophosphohydrolase	NA	NA	NA	NA
SQI02301.1\|1910309_1911050_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA
SQI02302.1\|1911086_1911608_+	crossover junction endodeoxyribonuclease	G3MA90	Bacillus_virus	2.6e-10	35.1
SQI02303.1\|1911609_1912209_-	protein yebB	NA	NA	NA	NA
SQI02304.1\|1912529_1913111_+	membrane protein	NA	NA	NA	NA
SQI02305.1\|1913469_1914081_+	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA
SQI02306.1\|1914089_1915100_+	Holliday junction DNA helicase	A0A127AWE7	Bacillus_phage	1.8e-07	25.9
SQI02308.1\|1915178_1915964_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA
SQI02309.1\|1915960_1916716_-	high-affinity zinc transporter ATPase	G3M9Y6	Bacillus_virus	8.5e-18	29.4
SQI02310.1\|1916737_1917739_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA
SQI02311.1\|1917754_1919074_+	Cell wall endopeptidase family M23/M37	A8ATH6	Listeria_phage	2.6e-14	40.9
SQI02312.1\|1919190_1920159_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
SQI02313.1\|1920159_1920852_-\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
SQI02315.1\|1921013_1921415_-\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQI02316.1\|1921549_1922992_-	pyruvate kinase A	NA	NA	NA	NA
SQI02317.1\|1923115_1923985_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
SQI02318.1\|1924326_1925802_+	glucose 6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.0e-79	37.5
SQI02320.1\|1926036_1927848_+	6-phosphogluconate dehydratase	NA	NA	NA	NA
SQI02321.1\|1927885_1928527_+	KHG/KDPG aldolase	NA	NA	NA	NA
SQI02322.1\|1928626_1929805_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
1929629:1929643	attL	NA	NA	NA	NA
SQI02323.1\|1929935_1930226_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA
SQI02324.1\|1930293_1930647_+	protein YebF	NA	NA	NA	NA
SQI02325.1\|1930740_1931400_+	inner membrane protein YebE	NA	NA	NA	NA
SQI02326.1\|1931612_1933664_+	oligopeptidase	NA	NA	NA	NA
SQI02327.1\|1933700_1934399_-	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.8e-07	40.4
SQI02328.1\|1934422_1935079_-	Putative amido hydrolase	NA	NA	NA	NA
SQI02330.1\|1935186_1935417_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
SQI02331.1\|1935554_1935929_+	Copper resistance protein CopC	NA	NA	NA	NA
SQI02332.1\|1935929_1936805_+	membrane protein	NA	NA	NA	NA
SQI02333.1\|1936821_1937175_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
SQI02334.1\|1937557_1938637_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.5e-100	52.5
SQI02335.1\|1938633_1939905_-	exonuclease VIII	Q9QF34	Lambdoid_phage	1.3e-55	66.7
SQI02337.1\|1940054_1940588_+	exported phage protein	A0A291LBG9	Klebsiella_phage	1.6e-10	42.4
1940528:1940542	attR	NA	NA	NA	NA
SQI02338.1\|1940856_1941024_-	lytic enzyme	NA	NA	NA	NA
SQI02339.1\|1941326_1941983_+\|terminase	terminase	Q9EYD0	Enterobacteria_phage	4.3e-42	58.5
SQI02340.1\|1942002_1942377_+\|terminase	phage terminase large subunit	Q8VNN7	Enterobacteria_phage	2.6e-60	83.7
SQI02341.1\|1942369_1943707_+	Tail Fiber Protein	E5G6P0	Salmonella_phage	9.9e-78	52.1
SQI02342.1\|1946141_1946264_+	Uncharacterised protein	NA	NA	NA	NA
SQI02343.1\|1946712_1947327_-	disulfide bond formation protein	NA	NA	NA	NA
SQI02344.1\|1947336_1947495_-	membrane protein	NA	NA	NA	NA
SQI02346.1\|1947627_1948542_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA
SQI02347.1\|1949333_1949858_-	fimbriae usher protein	NA	NA	NA	NA
SQI02348.1\|1949874_1950042_+	error-prone repair: component of DNA polymerase V with UmuD'	I6RSM4	Salmonella_phage	4.3e-07	90.0
SQI02349.1\|1949980_1950289_+\|transposase	transposase, Mutator family protein	A0A218MNI5	uncultured_virus	3.0e-14	62.5

DBSCAN-SWA_4

2582702 : 2590972

Escherichia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI03555.1\|2582702_2582942_+	virulence protein	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
SQI03557.1\|2583152_2583317_-\|transposase	transposase	NA	NA	NA	NA
SQI03559.1\|2583814_2584624_+	cytolethal distending toxin subunit CdtB	A5LH53	Enterobacteria_phage	1.6e-62	50.0
SQI03560.1\|2584696_2585074_+	Protein of uncharacterised function (DUF1353)	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
SQI03561.1\|2585222_2585765_-	Predicted lysozyme (DUF847)	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
SQI03562.1\|2585948_2586677_-	Pertussis toxin, subunit 1 subfamily	A0A0U2KD26	Escherichia_phage	1.6e-61	52.5
SQI03563.1\|2586693_2587107_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	3.2e-19	37.7
SQI03565.1\|2588151_2589276_-	bacteriophage protein	NA	NA	NA	NA
SQI03567.1\|2589721_2590972_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.0e-19	90.7

DBSCAN-SWA_5

2744722 : 2821610

Salmonella_phage(74.51%)

tRNA,tail,holin,protease,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI03872.1\|2744722_2745052_+\|tRNA	tRNA 2-thiouridine synthesizing protein E	NA	NA	NA	NA
SQI03874.1\|2745048_2745330_-	acylphosphatase	NA	NA	NA	NA
SQI03875.1\|2745378_2746167_-	transcriptional regulator	NA	NA	NA	NA
SQI03877.1\|2746183_2746732_-	kinase inhibitor	NA	NA	NA	NA
SQI03878.1\|2746946_2748158_+	LSU m5C1962 methyl transferase RlmI	NA	NA	NA	NA
SQI03880.1\|2748215_2748533_+	hemimethylated DNA binding protein YccV	NA	NA	NA	NA
SQI03881.1\|2748577_2748991_-	Succinyl-CoA synthetase alpha subunit-related enzyme	NA	NA	NA	NA
SQI03882.1\|2749164_2749827_+	UPF0319 protein YccT precursor	NA	NA	NA	NA
SQI03883.1\|2749921_2750380_+	methylglyoxal synthase	NA	NA	NA	NA
SQI03884.1\|2750415_2752470_-	helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
SQI03885.1\|2752593_2753040_+	Inner membrane protein YccF	NA	NA	NA	NA
SQI03886.1\|2753058_2755212_+	Putative efflux (PET) family inner membrane protein YccS	NA	NA	NA	NA
SQI03887.1\|2755198_2755804_-	DNA transformation protein TfoX	NA	NA	NA	NA
SQI03888.1\|2756020_2756530_+	cell division inhibitor	NA	NA	NA	NA
SQI03889.1\|2756886_2757939_+	outer membrane protein A	NA	NA	NA	NA
SQI03891.1\|2758010_2758463_-	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA
SQI03894.1\|2758648_2760409_+\|protease	protease	NA	NA	NA	NA
SQI03896.1\|2760477_2760996_+	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	NA	NA	NA	NA
SQI03898.1\|2761518_2762082_-	lipoprotein	NA	NA	NA	NA
SQI03900.1\|2762078_2763719_-	paraquat-inducible protein B	NA	NA	NA	NA
SQI03903.1\|2763723_2764977_-	paraquat-inducible protein A	NA	NA	NA	NA
SQI03905.1\|2764991_2766899_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
SQI03907.1\|2766911_2769020_-	23S rRNA (guanine-N-2-) -methyl transferase rlmL	NA	NA	NA	NA
SQI03909.1\|2769118_2770228_+	Flavodoxin reductases (ferredoxin-NADPHreductases) family 1	NA	NA	NA	NA
SQI03912.1\|2770224_2770767_-	Z-ring-associated protein C	NA	NA	NA	NA
SQI03915.1\|2770933_2771944_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
SQI03917.1\|2772151_2774764_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.8e-19	22.5
SQI03920.1\|2775190_2775397_+	MsgA	S4TNM0	Salmonella_phage	1.8e-31	100.0
SQI03923.1\|2776391_2776673_+	Uncharacterised protein	NA	NA	NA	NA
SQI03926.1\|2777152_2777875_+	type III secretion protein SopE	NA	NA	NA	NA
SQI03929.1\|2778070_2778478_-\|tail	tail fiber assembly protein	A0A1B0V844	Salmonella_phage	6.1e-55	78.9
SQI03931.1\|2778484_2779915_-	Fels-2 prophage Pin	A0A1B0V7G4	Salmonella_phage	1.3e-205	81.5
SQI03934.1\|2780319_2780577_-	bacteriophage protein	A0A0M5M1K4	Salmonella_phage	1.6e-40	92.9
SQI03937.1\|2780573_2781773_-	bacteriophage protein	A0A0M4RD32	Salmonella_phage	5.0e-214	97.5
SQI03940.1\|2781773_2782127_-	bacteriophage protein	A0A0M4R339	Salmonella_phage	2.3e-58	96.6
SQI03944.1\|2782126_2782879_-	bacteriophage protein	A0A0M5M1K7	Salmonella_phage	2.0e-91	70.2
SQI03946.1\|2783315_2784089_-	Uncharacterised protein	NA	NA	NA	NA
SQI03947.1\|2784230_2784578_-	putative secreted protein	A0A0M4RTY3	Salmonella_phage	5.8e-22	67.9
SQI03948.1\|2784574_2785642_-	bacteriophage protein	A0A0M4QX01	Salmonella_phage	5.5e-172	90.7
SQI03949.1\|2785644_2785947_-	bacteriophage protein	A0A0M4R5B7	Salmonella_phage	2.7e-52	99.0
SQI03950.1\|2785946_2786522_-	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	2.4e-97	100.0
SQI03951.1\|2786521_2788531_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	0.0e+00	98.5
SQI03952.1\|2788708_2789161_-	bacteriophage protein	A0A0M4S6U8	Salmonella_phage	5.1e-79	100.0
SQI03954.1\|2789164_2789605_-	bacteriophage protein	A0A0M5M1K6	Salmonella_phage	9.4e-78	100.0
SQI03955.1\|2789615_2790767_-	hypothetical prophage protein	A0A0M4RD26	Salmonella_phage	2.5e-215	100.0
SQI03956.1\|2790769_2791336_-	bacteriophage protein	A0A0M4R331	Salmonella_phage	1.8e-105	99.5
SQI03957.1\|2791310_2791700_-	bacteriophage protein	A0A0M3ULK0	Salmonella_phage	3.2e-69	100.0
SQI03958.1\|2791686_2792241_-	bacteriophage protein	A0A0M4S631	Salmonella_phage	1.4e-94	99.5
SQI03960.1\|2792237_2792657_-	bacteriophage protein	A0A0M5M3S2	Salmonella_phage	1.4e-70	96.3
SQI03961.1\|2792610_2792979_-	bacteriophage protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
SQI03962.1\|2793020_2793962_-	bacteriophage protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
SQI03963.1\|2793973_2794471_-	bacteriophage protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
SQI03964.1\|2794475_2795708_-\|head,protease	head protein/prohead protease	A0A0M4R5A6	Salmonella_phage	1.6e-228	99.5
SQI03965.1\|2795722_2796331_-	putative bacteriophage protein	A0A0M4REK0	Salmonella_phage	6.4e-109	96.0
SQI03967.1\|2796344_2797814_-	Phage-associated protein	A0A0M4S6U1	Salmonella_phage	1.3e-280	99.4
SQI03968.1\|2797813_2798047_-\|terminase	putative prophage terminase large subunit	A0A077KAW0	Edwardsiella_phage	1.4e-19	64.4
SQI03969.1\|2798034_2799210_-\|terminase	putative prophage terminase large subunit	A0A077KAW0	Edwardsiella_phage	1.4e-152	70.3
SQI03970.1\|2799175_2799928_-\|terminase	putative prophage terminase small subunit	G8C7P2	Escherichia_phage	9.0e-12	73.3
SQI03971.1\|2799998_2800181_-	Protein of uncharacterised function (DUF826)	NA	NA	NA	NA
SQI03972.1\|2800405_2800879_-	putative endopeptidase	A0A0M4RD57	Salmonella_phage	3.2e-71	93.0
SQI03974.1\|2800875_2801328_-	Lysozyme	A0A0M4R365	Salmonella_phage	4.6e-80	98.7
SQI03975.1\|2801311_2801647_-\|holin	bacteriophage holin	A0A0M3ULK9	Salmonella_phage	4.1e-57	100.0
SQI03976.1\|2802129_2802603_+	GogA	Q9MBM2	Phage_Gifsy-1	2.4e-87	100.0
SQI03977.1\|2803495_2804185_-	Gifsy-1 prophage RegQ	I6PDF8	Cronobacter_phage	1.1e-59	52.4
SQI03978.1\|2804181_2804322_-	DNA breaking-rejoining protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
SQI03979.1\|2804318_2804930_-	bacteriophage Lambda NinG protein	A0A0M4RU10	Salmonella_phage	2.7e-91	98.5
SQI03981.1\|2804932_2805139_-	Phage protein	S4TNP0	Salmonella_phage	4.6e-35	98.5
SQI03982.1\|2805138_2805741_-	bacteriophage protein	S4TTI0	Salmonella_phage	2.6e-110	100.0
SQI03983.1\|2805803_2806052_-	putative bacteriophage cohesive ends	NA	NA	NA	NA
SQI03984.1\|2806586_2807093_-	Uncharacterised protein	NA	NA	NA	NA
SQI03986.1\|2807395_2807773_-	DNA-binding protein	A0A088CBK9	Shigella_phage	3.9e-16	37.6
SQI03988.1\|2808239_2809247_-	replication protein	A0A0U2RT81	Escherichia_phage	2.7e-128	69.9
SQI03991.1\|2809294_2809789_-	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA
SQI03992.1\|2809775_2810030_-	CRO	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
SQI03993.1\|2810194_2810527_+	putative regulator	A0A0M4R5D1	Salmonella_phage	5.6e-06	32.7
SQI03994.1\|2810825_2811014_+	Uncharacterised protein	NA	NA	NA	NA
SQI03995.1\|2810958_2811138_-	Uncharacterised protein	NA	NA	NA	NA
SQI03996.1\|2811398_2811674_+	Uncharacterised protein	NA	NA	NA	NA
SQI03998.1\|2811678_2811885_+	prophage Kil protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
SQI04001.1\|2811960_2812296_+	Uncharacterised protein	NA	NA	NA	NA
SQI04004.1\|2812436_2815616_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	68.1
SQI04063.1\|2815626_2816736_+	Gifsy-2 prophage RecT	H6WRX0	Salmonella_phage	7.1e-207	100.0
SQI04065.1\|2816778_2817018_+	putative bacteriophage protein	S4TR31	Salmonella_phage	2.0e-37	100.0
SQI04067.1\|2817058_2817307_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
SQI04069.1\|2817351_2818644_+	Integrase	S4TSP2	Salmonella_phage	2.2e-252	99.8
SQI04071.1\|2818838_2820041_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
SQI04073.1\|2820209_2821610_+\|tRNA	asparaginyl-tRNA synthetase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1

DBSCAN-SWA_6

3247011 : 3306246

Bacillus_phage(23.08%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI06294.1\|3247011_3247929_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
SQI06295.1\|3247925_3248378_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
SQI06296.1\|3248378_3248795_-	copper efflux regulator	NA	NA	NA	NA
SQI06297.1\|3248904_3251406_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	1.5e-111	37.1
SQI06298.1\|3251558_3252386_+	Secreted protein	NA	NA	NA	NA
SQI06299.1\|3253466_3253946_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
SQI06300.1\|3254062_3255715_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
SQI06301.1\|3255887_3257108_+	fosmidomycin resistance protein	NA	NA	NA	NA
SQI06302.1\|3257119_3257245_-	Uncharacterised protein	NA	NA	NA	NA
SQI06303.1\|3257322_3258999_+	transport protein	NA	NA	NA	NA
SQI06304.1\|3259047_3260352_-	inosine/guanosine kinase	NA	NA	NA	NA
SQI06305.1\|3260504_3261476_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	6.6e-15	27.4
SQI06306.1\|3261472_3262435_-	ferrochelatase	NA	NA	NA	NA
SQI06307.1\|3262662_3263307_-	adenylate kinase	NA	NA	NA	NA
SQI06308.1\|3263664_3265539_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.7e-115	36.9
SQI06309.1\|3265649_3266255_-	recombination protein RecR	NA	NA	NA	NA
SQI06310.1\|3266254_3266584_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQI06311.1\|3268671_3269223_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
SQI06312.1\|3269375_3269753_-	Inner membrane protein YbaN	NA	NA	NA	NA
SQI06313.1\|3269833_3270349_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
SQI06314.1\|3270362_3270530_+	Putative inner membrane protein	NA	NA	NA	NA
SQI06315.1\|3270599_3270986_+	Transposase_31	Q2A0A7	Sodalis_phage	6.2e-33	57.9
SQI06316.1\|3271010_3271523_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	4.0e-19	46.8
SQI06317.1\|3271564_3274927_-	integral membrane protein AefA	NA	NA	NA	NA
SQI06318.1\|3275045_3275699_-	potential acrAB operon repressor	NA	NA	NA	NA
SQI06319.1\|3275840_3277034_+	acriflavin resistance protein A	NA	NA	NA	NA
SQI06320.1\|3277056_3280206_+	acriflavin resistance protein B	NA	NA	NA	NA
SQI06321.1\|3280701_3281076_+	Hha toxicity attenuator	NA	NA	NA	NA
SQI06322.1\|3281103_3281322_+	hemolysin expression modulating protein	NA	NA	NA	NA
SQI06323.1\|3281500_3282052_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQI06324.1\|3282169_3282640_+	Putative inner membrane protein	NA	NA	NA	NA
SQI06325.1\|3282695_3282836_-	LSU ribosomal protein L36p	NA	NA	NA	NA
SQI06326.1\|3282841_3283102_-	50S ribosomal protein L31	NA	NA	NA	NA
SQI06327.1\|3283362_3284877_+	Uncharacterized protein ylaB	NA	NA	NA	NA
SQI06328.1\|3285185_3285497_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
SQI06329.1\|3285529_3286099_-	lipoprotein	NA	NA	NA	NA
SQI06330.1\|3286313_3287174_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQI06331.1\|3287273_3288560_-	ammonium transporter	NA	NA	NA	NA
SQI06332.1\|3288591_3288930_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQI06333.1\|3289142_3290924_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	2.1e-38	26.7
SQI06334.1\|3290916_3292689_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.7
SQI06335.1\|3292729_3293188_-	transcriptional regulator	NA	NA	NA	NA
SQI06336.1\|3293300_3294356_+	lyase	NA	NA	NA	NA
SQI06337.1\|3294405_3295224_-	HMP-PP phosphatase	NA	NA	NA	NA
SQI06338.1\|3295324_3297025_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQI06339.1\|3297089_3297785_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.2e-87	68.4
SQI06340.1\|3297890_3298289_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
SQI06341.1\|3298392_3298767_-	competence protein ComEA	NA	NA	NA	NA
SQI06342.1\|3298916_3300788_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQI06343.1\|3301078_3301351_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
SQI06344.1\|3301559_3303914_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5
SQI06345.1\|3304099_3305371_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-131	56.5
SQI06346.1\|3305622_3306246_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

DBSCAN-SWA_7

3429570 : 3446464

Escherichia_phage(40.0%)

integrase,transposase

attL 3423298:3423311|attR 3432101:3432114

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3423298:3423311	attL	NA	NA	NA	NA
SQI06458.1\|3429570_3430050_+\|integrase	Phage integrase	Q76H30	Enterobacteria_phage	3.0e-85	94.9
SQI06459.1\|3430296_3431622_+\|integrase	prophage integrase	A0A221SAN4	Ralstonia_phage	9.0e-07	28.4
SQI06460.1\|3431738_3432185_+	Uncharacterised protein	NA	NA	NA	NA
3432101:3432114	attR	NA	NA	NA	NA
SQI06461.1\|3432181_3432406_+	Uncharacterised protein	NA	NA	NA	NA
SQI06462.1\|3432524_3433379_+	Uncharacterised protein	NA	NA	NA	NA
SQI06463.1\|3433405_3433519_+	Uncharacterised protein	NA	NA	NA	NA
SQI06464.1\|3433535_3434105_+	multiple promoter invertase	NA	NA	NA	NA
SQI06465.1\|3434376_3435003_+\|transposase	transposase	NA	NA	NA	NA
SQI06466.1\|3435088_3436102_-	adenosine deaminase	NA	NA	NA	NA
SQI06467.1\|3436098_3437058_-	ribonucleoside hydrolase 2	NA	NA	NA	NA
SQI06468.1\|3437284_3437968_+	DNA-binding transcriptional activator YeiL	NA	NA	NA	NA
SQI06469.1\|3437945_3438254_+	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA	NA	NA	NA
SQI06470.1\|3438517_3438784_+	Uncharacterised protein	NA	NA	NA	NA
SQI06471.1\|3439041_3439950_+\|transposase	transposase	NA	NA	NA	NA
SQI06472.1\|3440258_3440777_+	Protein of uncharacterised function (DUF2975)	NA	NA	NA	NA
SQI06473.1\|3440776_3440986_+	Predicted transcriptional regulator	NA	NA	NA	NA
SQI06474.1\|3441172_3441721_+\|transposase	transposase	NA	NA	NA	NA
SQI06475.1\|3441730_3442003_+	Insertion element iso-IS1N protein insA	A0A0U2RK18	Escherichia_phage	1.5e-38	88.1
SQI06476.1\|3442014_3442425_+	insertion element iso-IS1n protein insB	A0A0U2RK18	Escherichia_phage	1.8e-70	91.9
SQI06477.1\|3443831_3445103_-	Transposase and inactivated derivatives, IS30 family	NA	NA	NA	NA
SQI06478.1\|3445258_3446464_-\|transposase	transposase	A0A220NQR7	Corynebacterium_phage	2.4e-83	46.0

DBSCAN-SWA_8

4378937 : 4414609

Salmonella_phage(53.66%)

capsid,tail,portal,plate,holin,integrase,terminase

attL 4378730:4378776|attR 4409984:4410030

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4378730:4378776	attL	NA	NA	NA	NA
SQI07300.1\|4378937_4379345_+	Uncharacterised protein	S4TTB4	Salmonella_phage	1.6e-71	100.0
SQI07301.1\|4379395_4379614_-	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	4.7e-38	100.0
SQI07302.1\|4379691_4380861_-	phage late control gene D	S4TRX8	Salmonella_phage	1.8e-208	99.0
SQI07303.1\|4380857_4381127_-	gp25	S4TUC3	Salmonella_phage	3.9e-42	98.9
SQI07304.1\|4381126_4381342_-	gp25	A0A218M4I2	Erwinia_phage	1.1e-18	86.5
SQI07305.1\|4381356_4383798_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	95.6
SQI07306.1\|4383942_4384278_-\|tail	phage tail protein	S4TTB2	Salmonella_phage	1.4e-52	100.0
SQI07307.1\|4384340_4384859_-\|tail	major tail sheath protein FII	S4TNZ0	Salmonella_phage	6.5e-94	100.0
SQI07308.1\|4384874_4386062_-\|tail	bacteriophage major tail sheath protein FI	Q6K1H0	Salmonella_virus	2.9e-222	99.5
SQI07309.1\|4386764_4388507_-	gp19	A0A0M3ULF6	Salmonella_phage	1.3e-271	99.0
SQI07310.1\|4388517_4389048_-\|tail	orf38; p2 I-like tail protein	S4TTA8	Salmonella_phage	9.2e-104	100.0
SQI07311.1\|4389040_4389949_-\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	1.3e-161	99.7
SQI07312.1\|4389955_4390303_-\|plate	baseplate assembly protein	S4TRW8	Salmonella_phage	7.2e-57	99.1
SQI07313.1\|4390299_4390941_-\|tail	phage tail protein	Q6K1H6	Salmonella_virus	2.4e-114	99.1
SQI07314.1\|4391093_4391963_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQI07315.1\|4392092_4392545_-\|tail	tail completion protein S	A0A0M3UL83	Salmonella_phage	4.2e-65	91.9
SQI07316.1\|4392537_4393005_-\|tail	tail fiber protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
SQI07317.1\|4392967_4393126_-	Phage outer membrane lipoprotein Rz1	S4TNY4	Salmonella_phage	2.6e-22	100.0
SQI07318.1\|4393112_4393526_-	lysozyme	S4TRW3	Salmonella_phage	1.3e-41	96.4
SQI07319.1\|4393522_4394020_-	phage lysozyme gene	S4TUB1	Salmonella_phage	1.2e-92	99.4
SQI07320.1\|4394006_4394303_-\|holin	phage holin protein	Q6K1I2	Salmonella_virus	1.7e-46	99.0
SQI07321.1\|4394306_4394510_-\|tail	phage tail protein	A0A0M3ULF4	Salmonella_phage	3.6e-32	100.0
SQI07322.1\|4394509_4395016_-\|capsid	capsid completion protein	S4TNY1	Salmonella_phage	1.3e-91	100.0
SQI07323.1\|4395109_4395859_-\|terminase	terminase, endonuclease subunit	Q6K1I5	Salmonella_virus	3.8e-127	96.8
SQI07324.1\|4395862_4396930_-\|capsid	Phage major capsid protein	Q6K1I6	Salmonella_virus	3.5e-195	98.6
SQI07325.1\|4397006_4397861_-	phage protein V	Q6K1I7	Salmonella_virus	6.2e-158	99.6
SQI07326.1\|4398026_4399796_+\|terminase	Phage terminase ATPase subunit	S4TT96	Salmonella_phage	0.0e+00	100.0
SQI07327.1\|4399795_4400842_+\|portal	phage portal pbsx family protein	S4TNX7	Salmonella_phage	8.8e-191	99.7
SQI07328.1\|4400872_4401598_-	Uncharacterised protein	S5W9H2	Leptospira_phage	2.2e-07	27.1
SQI07329.1\|4401594_4402413_-	Uncharacterised protein	NA	NA	NA	NA
SQI07330.1\|4402751_4403330_-	Uncharacterised protein	S5M7T3	Escherichia_phage	3.9e-15	48.4
SQI07331.1\|4403371_4403842_-	Uncharacterized phage-associated protein	NA	NA	NA	NA
SQI07332.1\|4404100_4406371_-	replication protein	A0A0F7LBQ2	Escherichia_phage	0.0e+00	93.2
SQI07333.1\|4406360_4406636_-	gp83	M1TAP2	Escherichia_phage	2.5e-44	97.8
SQI07334.1\|4406632_4406857_-	C4-type zinc finger protein, DksA/TraR family	A0A0F7LDG9	Escherichia_phage	5.0e-35	98.6
SQI07335.1\|4406859_4407159_-	11.3 kDa protein in GpA 5'region	S4TUD1	Salmonella_phage	1.3e-43	96.0
SQI07336.1\|4407158_4407383_-	8.3 kDa protein in GpA 5'region	S4TP68	Salmonella_phage	2.6e-31	97.3
SQI07337.1\|4407446_4407947_-	Replication protein (GpB)	M1SV55	Escherichia_phage	5.9e-92	99.4
SQI07338.1\|4408116_4408389_-	Cox protein	Q1JS20	Enterobacteria_phage	1.5e-46	98.9
SQI07339.1\|4408524_4408818_+	phage repressor protein c	Q1JS21	Enterobacteria_phage	3.4e-47	96.9
SQI07340.1\|4408887_4409868_+\|integrase	Puataive integrase	Q858U3	Yersinia_virus	2.2e-183	98.2
SQI07341.1\|4410052_4410553_-	extracytoplasmic stress protein for protein-mediated toxicities	NA	NA	NA	NA
4409984:4410030	attR	NA	NA	NA	NA
SQI07342.1\|4410703_4411402_+	two-component response regulatory protein	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
SQI07343.1\|4411398_4412772_+	two-component sensor kinase protein	W8CYF6	Bacillus_phage	7.2e-15	25.6
SQI07344.1\|4412822_4413218_-	membrane protein	NA	NA	NA	NA
SQI07345.1\|4413229_4413919_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
SQI07346.1\|4413988_4414609_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483457

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection