CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483459	Corynebacterium jeikeium strain NCTC11914 genome assembly, chromosome: 1	6 crisprs	cas3,csa3,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	0	38	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483459_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483459_1

328940-329024

Orphan

Consensus_repeat	Method
ACGCATTCCCGTTCTAACGACAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483459_1

>merge|LS483459|1|328940-329024|CRISPRCasFinder
ACGCATTCCCGTTCTAACGACATTTCCCCCAAAGACAGTCCCCTGGAACCGCTTAGCCAGCCACGCATTCCCGTTCTAACGACAT

>LS483459|1|1|328940-329024|CRISPRCasFinder
ACGCATTCCCGTTCTAACGACAT	TTCCCCCAAAGACAGTCCCCTGGAACCGCTTAGCCAGCC
ACGCATTCCCGTTCTAACGACAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483459.1\|SQI18909.1\|321799_323482_+\|major-facilitator-superfamily-permease	unknown	unknown	gnl\|CDD\|129794
LS483459.1\|SQI18913.1\|325917_326244_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI18929.1\|335389_335716_-\|transposase-for-insertion-sequence-element	unknown	unknown	gnl\|CDD\|310261
LS483459.1\|SQI18908.1\|320929_321730_+\|rod-shaped-morphology-protein	unknown	unknown	gnl\|CDD\|224755
LS483459.1\|SQI18916.1\|327066_328572_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI18911.1\|323579_324338_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|181162
LS483459.1\|SQI18931.1\|336681_337470_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
LS483459.1\|SQI18934.1\|340319_341093_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|273359
LS483459.1\|SQI18907.1\|319716_320781_+\|putative-secreted-protein	unknown	unknown	unknown
LS483459.1\|SQI18926.1\|333681_334827_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI18932.1\|337581_338469_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
LS483459.1\|SQI18917.1\|329114_329789_-\|GtrA-like-integral-membrane-protein	unknown	unknown	gnl\|CDD\|225155
LS483459.1\|SQI18920.1\|329754_330465_-\|hypothetical-membrane-protein	unknown	unknown	gnl\|CDD\|377229
LS483459.1\|SQI18904.1\|317874_318975_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
LS483459.1\|SQI18933.1\|338816_340184_+\|aminotransferase	unknown	unknown	gnl\|CDD\|273906
LS483459.1\|SQI18924.1\|331526_333359_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235531
LS483459.1\|SQI18914.1\|326268_327042_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	unknown
LS483459.1\|SQI18921.1\|330614_331523_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|224137
LS483459.1\|SQI18912.1\|324373_325786_-\|decaprenylphosphoryl-beta-D-ribose-2-epimerase-subunit	unknown	unknown	gnl\|CDD\|223354
LS483459.1\|SQI18905.1\|319151_319727_+\|cholesterol-esterase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LS483459.1\|SQI18909.1\|321799_323482_+\|major-facilitator-superfamily-permease	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.50381e-67
LS483459.1\|SQI18932.1\|337581_338469_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	6.97915e-68
LS483459.1\|SQI18929.1\|335389_335716_-\|transposase-for-insertion-sequence-element	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	1.9571e-15
LS483459.1\|SQI18908.1\|320929_321730_+\|rod-shaped-morphology-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	1.60216e-23
LS483459.1\|SQI18920.1\|329754_330465_-\|hypothetical-membrane-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.26544e-21
LS483459.1\|SQI18911.1\|323579_324338_-\|short-chain-dehydrogenase	gnl\|CDD\|181162	PRK07904, PRK07904, decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase.	2.67348e-160
LS483459.1\|SQI18931.1\|336681_337470_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.04794e-116
LS483459.1\|SQI18934.1\|340319_341093_+\|regulatory-protein	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.91378e-36
LS483459.1\|SQI18933.1\|338816_340184_+\|aminotransferase	gnl\|CDD\|273906	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. [Unknown function, Enzymes of unknown specificity].	3.63617e-66
LS483459.1\|SQI18917.1\|329114_329789_-\|GtrA-like-integral-membrane-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	3.64194e-20
LS483459.1\|SQI18904.1\|317874_318975_-\|alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
LS483459.1\|SQI18924.1\|331526_333359_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|235531	PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.	0
LS483459.1\|SQI18921.1\|330614_331523_-\|glycosyltransferase	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	1.50315e-48
LS483459.1\|SQI18912.1\|324373_325786_-\|decaprenylphosphoryl-beta-D-ribose-2-epimerase-subunit	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.77241e-57

>LS483459.1|SQI18916.1|327066_328572_+|Uncharacterised-protein
MNRSSLYGAAGGYESAGGSTAARANGSGAADGVDAADAPEKARSAEAPIAGGSVISLSQIRTSRRDEADSAAEGAAGSVAEGVSTEGAAKGVSAEGAEVQESLGIMSTPGAGTSRNNGAHTTVFTVVVEHHFPGVGRYSRLLSVSGAMSVADFADAILTSFDWPESVNRVPEAHPTRYVARAERGVGAPDSAVTDVTTEPTWSFRARTAGRVRVYAKGANSIGTALGDIFRRGTIGVLKVGRYDFSVNVTDTTTRHEEIELVPTGSPFDASFDAPGEADAEAVLLAADFLADTEDDAAEAGGVNKNQDDELAARLHPAGIPARVDITEVNVALAGEDTVEQILAETDPELRELLHERALYEFIPLLQALDLERPANVTEHAAELLADAPIEKSKIGRAAAWARIIALSTLVDSEVDEVSEAFMSALGFTRADAKLPPTDTALGTDALSASEIKWLSRRTGRILAQVGASKWEPQPDDQAVPLVPQCSLLDRLEMYRFVLQR
>LS483459.1|SQI18914.1|326268_327042_+|N-acetylglucosamine-6-phosphate-deacetylase
MSTTAPESTAAESGVAASAAGSGTTPNAAPGAPEPVRYDPIMVVAATGPADDPTFAIWQVETDPEVQLGDFSGAWLIDGAGIHGFAASADWIEGTDDRAAMLAALLRYPVLLVGDEAAAKVLPNDVALVDVAATEVALNDALASAKQHFSDEFPGKKQPAWGSFRTLEEFREAEAGVAGAGAGGGAGAAAESDSVANGSGSAAEREAVAVALQEAAALRGWIAQYNAFDKLRVRRLGPVISEFVTAQTLPLVLAQRG
>LS483459.1|SQI18913.1|325917_326244_-|Uncharacterised-protein
MIFPMAVFDRFPAAAKLFKRSKPSPAEQEHRSAPVRVGGVGKESSYEASTRTNLPLNEFMTRLMAQELPILDSTSRQRVRDILREYDGPTITEPEELPEEIRQIMELY
>LS483459.1|SQI18912.1|324373_325786_-|decaprenylphosphoryl-beta-D-ribose-2-epimerase-subunit
MELHTSTRTLTGWGRTAPTTAEVLSTQDVDQIAAAVARVADDNADKPSHLQRGVIARGMGRSYGDPAMNAGGLVIDMQQLNRIHSINPDTAIVDVDAGVTLDQLMKAALPYGLWVPVLPGTRQVTIGGAIGPDIHGKNHHSAGSFGNHVRSMELLVADGRVLHLTPEGSEDDPDGELFWATVGGMGLTGIILRATIEMTKTETAYFIADGDMTHSLDETIAFHSDGSEHNFTYSSAWFDAISPEPKLGRAAISRGSLATLDQLKEYAPKLAKDPLKFKAPQLMTVPDIFPSFTMNKLSMVAIGELWWLKSGEYRNQVQNLTQFYQPLDLIGEWNRGYGSKGFLQYQFVVPTEAVEPFKEIIRDIQRSGHYSALNVFKLFGEGNKAPLSYPMPGWNVCVDFPIKPGLGAFLDDLDRRVMEFGGRLYLAKESRTSAENFHKMYPGLPGWLATRKRVDPTGVFASDMSRRLEL
>LS483459.1|SQI18911.1|323579_324338_-|short-chain-dehydrogenase
MIDAVGKPQSILLLGGASDMGLAVVEEFLSRGPARVILAARAGESLDDATARMNAAGASEVVPVTFDAVDFDSHPQVFEEIFSHGDVDLAIVAFGILGDNEKQWTNQKLAVQAAQVNFTGAVSVGVLLADYMKKQGHGQIVAFSTVAGEMVRRSNFVYGSTKAGLDGFYRMLNEALRGTGVRVLTVRPGQVRTNMTKDLDDAPLTVDKEDVAKAIAKAVDNRKSLIWVHPLFRPIMLILKHLPLPILRKLPL
>LS483459.1|SQI18909.1|321799_323482_+|major-facilitator-superfamily-permease
MHPPFYRLGGIFLSEKPFSDAANPDRATTPADAAEPTESTSENLSPDRQGHPTPPGEPAAGAKLLIGMLVAAAFVVILNETTLAVALPVLMGEFGVTADAAQWLTTAFMLTMAVVIPMTGYIMQRFRLRSIYIAALTTFLAGTVLAAAAPTFPILLLARVVQASGTALVIPMLMTTIIRLVPIDRRGAVFGLVSVVIAVAPALGPTFSGVVLEALGWRWIFILVAPLVLISLVAGLFLVKNFEEPSRPSLDVLSVFLSAFGFAGLVYGLAGLSELADGVPVQRLIILAVGAVILAVFFLRQRSLERSSKPGATPLLNLQPLRVREYNLSLGLLLFTFSMLFGFIILMPLYAQNVAGLSELKTGMVSLPGGLVMGLLGPAVGRAYDARGTRPLIIPGSILITIGMMGFAALEQTEHLFSWVGSGTWPAFVQLTVVTVVLNLGIALMMTPLMSNALAAVPDSLASHAQAILNTFQQVAGGAGTAIFVAVMTFASARYASSNAEELAGLGATDPALAEAQVVGQGIHVAFLVAAFAAVALMVASAFLRLDAKDSAHPGAPREV
>LS483459.1|SQI18908.1|320929_321730_+|rod-shaped-morphology-protein
MANPFSKGWKYLMQSLDTKIEENADPHVQIQQATEAARKQHQQISESAARVIGNRNQLEMKMNRLQEDAEKLSDNARTAIQQADKAAADGDQAKANELNQTAELFASQLVTVEQQLEETKRLYSGAEEAARQAQQQQQQSAARLEDQMAQINQLRSQVDQAKMQEATANSMQQMDGLVQNNDVPTLDSVREKIEQRYAQALGSQELVENSVQGRMSEIESAGNDMRASSRLEEIRAQLNSENSANALEQGEGNGDGTGEAQSELER
>LS483459.1|SQI18907.1|319716_320781_+|putative-secreted-protein
MPAKGRLARFAEWRRNRPFVPGLLVLLSGVVIMTPAYLTLRISDLLVMISTLSGVSTLFLGAGQIMFALGIWLKPATAPYLGVFAILVSLVALPASNIGGFLLGSLLGIFGGAFALAWESGEPGERSERKSKKGGGERSSGETGGETEAEVAESEAGSEEGSGGGYSATIAALLVAVGIATGVGILNANAPYSVAQPARVGDVGQVTADNVTFKGNVHIGVDSVGTEHGGRDLLRITGDRLEIKNLQIRLPGQWGDGLMQTGPDVETYVVEGPVVVEATSLEAVPALAEISTVPVKVDISAGAGDVLHQLGLVPSEAPIPDPVMEVVSLKQVKLDLLHLTGRDMDAPVVHLYSL
>LS483459.1|SQI18905.1|319151_319727_+|cholesterol-esterase
MGRINGKKAAVALTAGLVGFAGTGMAVAKGGISANLALSGSFFTVTIGGLSGQDFSLFMDNDTKGDDHLPVARVKIKETKASDLCLSTTVPDLPAVGEATLSLRANGQNSVDADDLIVGSTDIKGSLRMADPNLGIDASQVNPEAPDDAWGLHSKDVQVVAEKIIATSVGAKQLNVSGVEANVRRGTENAC
>LS483459.1|SQI18904.1|317874_318975_-|alcohol-dehydrogenase
MPAPHERGLRSLGSMDVACYSAPGAGEALEKSTISRRELRPNDCFIKIRWAGICHSDIHTVNGDWPHDNFPMTPGHEIIGEVTEVGTEVQNFHPGDVVGIGCLVDSCLDCDACREGDENYCENGSTGTYNAPDRIDGTITQGGYSTHIVCREEFLVRIPEAFADLESDAAAAATPLLCAGITTYSPLKHWGVGEGSRVAVVGMGGLGHVAVKLAAAMGAEVTVLSHSKSKEADGLAFGASRYVATKEEGWHKPLRASFDLIINTVSAPLDPAPFISTLARGGTMVMLGLPPEKMQISAGALIGKRRSVAGSAIGGIRETQEMIDFCAAHDITAEAEVIPAEEINTAYQRVLDSDVRYRFVIDVNTL
>LS483459.1|SQI18917.1|329114_329789_-|GtrA-like-integral-membrane-protein
MLVLALVMRMSKPSSNDAINDAPSPQPASDPAGAGHSSGAGAASGAAAGAGNVSAPHAGSGAAADNAAAGNAAAEQGARVGDNFQSEHTTRAQRIIQSQLVKFVLVGGFSAIVDFGSTALFTFAFGLSDGVAKALGFVLGTLTAYFINRRWTFQAEPSGRRFAITMVTYGLTFIVQWGLYKVSIPWLEGFDLNAFWVRAISFVIAQGTATVLNFLIQKFLIFKR
>LS483459.1|SQI18920.1|329754_330465_-|hypothetical-membrane-protein
MKLAEVTVSETQTTPSAEPTQPADDAGVNKKNAKDAALSRAHRRRNVARQFIQFGLVGASGFVVNQAIFVLSKKLAEAGWDIHVQDAFLNLLGTQYHFRWYHVFSVVAFLLANIWNFCLNRYWTFRHEPKRAWWKQLPQFMAVGVFGLLITLVVSTALVNPESPIALPQDIFDNSTGLRTRAYWGNFIGVIVAVPANFLFNKLWTFRAKPREASRVVRVVEPRTGGAGSGAGDADV
>LS483459.1|SQI18921.1|330614_331523_-|glycosyltransferase
MPLSRKDTAAAVIVTHNRVKLLEASLRQVANQEGAEVAHVVVVDNGNDPAVRELVEAVCGSRGHYVGSATNLGGAGGFALGFLTALSLGVDAIWCADDDGRPADEHVLATLQEVAEREGLEEISPVVCNIEDPERLAFPLRQGLVWRRTLSELEGSFLPGIASLFNGALISARAMEIIGVPDYRLFIRGDEVEYHRRLVRSGLPFGTCLTCAYLHPDGSDEFKPILGGKMHTQYPDNEFKRFFTYRNRGYIMNQPGMRKLLPQEYARFGWFFLVQKKDPKGFAEWLRLHALGRREQFRRPGK
>LS483459.1|SQI18924.1|331526_333359_-|long-chain-fatty-acid--CoA-ligase
MTNPAGDNGAGTPAGNEEATPAGTPAGDGATASEAFNSKAWLQHYTPWTQHTIDLDDPAENPAGFTIPEVFWHAVDTIGERNAFTFFGKATTYEQYGHQVAIASAALEKLGVQRGDHVAIALPNCPQALIAFYAIQNIGAVPTLHNPLYTAPELRHPFNDHGAKVAFFWDKVGDVAETLRLNSPLETVIAVTLPDEMPAPLRYALKLPIPKIKAMKDKLTGPAPAAVSWKSFMRTGGNGEKWLRGGVKNIKIDPTDPALILYTSGTTGKPKGAVLTHRNLIANLRQGQAWVKGLGKGPKPEVMLAALPIFHAYGLTMNITLAPMIGGEIQLLPAPEMPLVMRVMKKNMPSWMPGVPALYQNIMKEAAKRDMPLSGIRNSFSGASALPAETVREWESCTGGNIVEGYGLTETAPIIAGNPMGKGREGYIGVPFPSTEIRIANPDNPAETMPDGEAGELVVRGPQVFKGYLNRPDATAEAFHEDWFRTGDMAVMEADGYLKIVSRIKEMIITGGFNVYPAEVEEVLCEHPSIEQASVVGVGRKDGSETVAAAVVLADGAVIDADDFRAFAKERLTAYKVPKVFHAFQELPADQLGKVRRREVQELVAEKEQA
>LS483459.1|SQI18926.1|333681_334827_-|Uncharacterised-protein
MTGDNTNASTSTSATSKNAQPTKPASTKPSAYTPAKHHQPVKHLVDVRRIDPSQARKWQRWAERGEAVRLARGIYIPAGLWREIGQQPNAAEIQAQAFIVAEYLRYSHKIPAVVAGKSAAFLHGLPLEKFEPPETVELASPKRSLMGRNGRSERYLAAPGQGQRAVLIPTEFGEIWTSGLLDTCHDLGLRHSLDDAVIATEAALHTKKITWHEWRKWRAWQDGLRDPAATPATAPIRHGAQRARTAARLITRFSESPRESQLKIRFWEHDLPAPFQQVNILNEGGWPIGRVDMFFDVGLAVEYDGREKYGSTTPAIERALLKERQRENDIQARGITLLRVTAETYLSGCAVEQVSEHFHILAARPTRPPCTLWSGGALAWS
>LS483459.1|SQI18929.1|335389_335716_-|transposase-for-insertion-sequence-element
MDVHKYTYQTAWSDEDQEFVATVTEFPSLSWLAPDRAQAEARLLDLVAEVVEDMTQAGETVPEPLGLRRFSGKFNVRTSPSLHRMLAIEAQSEGVSLNTLVNQKLAAR
>LS483459.1|SQI18931.1|336681_337470_-|ABC-transporter-ATP-binding-protein
MVSIDTYDACVDFPIFDAKTRSMKQTFLGAAGGAIGRNSSNTVMVEALKGVNLHLQDGDRIGLVGHNGAGKSTLLRLLSGIYEPTRGSAIVRGRVAPVFDLGVGMDPEISGYENIMIRGLFLGQTRKAMRRKMDDIAEFSELGEYLDMPLRTYSTGMRIRLALGVVTSIDPEILLLDEGIGAVDAAFMAKARGRLVEMVERSGILVFASHSNEFLAQLCDSALWIDHGEVRQVGRVDDVVEAYEGPEAGEHVRKVLKDLGRG
>LS483459.1|SQI18932.1|337581_338469_-|ABC-transporter-permease
MPQKMPEAADLQRITAAAEGDIPASNSQTFGAAWADLKKGLAQRELWLALGWQDIKQRYRRSTLGPLWITIATGVMALALGLLYSLLFQQDLASFLPHVAVGLILWGFISGCIKDGSEVFIANEGLIKQLPSALSVHVYRLVWRQFLFLLHNLVIWLVLLAVFRPSLGWEVLLVVPAMALMIANGIWVTMFFGIIATRFRDVAPLLDSLVQLAFYMTPIVWTTKTLRDQGGAVAERARIAEINPLYHYLEIVRGPMIGEPVPAYHWGIVGVLTVIGLALALLVMRRWRFRVSYWV
>LS483459.1|SQI18933.1|338816_340184_+|aminotransferase
MFDVPRVRGLYASLSDGWTYLNAQDSPQVPERVSSAVARSFRVASLLEPPESATGSHSRAQRLGRRIGESFGDSARTAIADLTGARPENVVLGASREALLDDLAHALYRRLRLGQEVVLSRIDDPANVAPWKHAADLYGARVRWAEPDLSSGVLPAWQFTNLVEPETTVVAVSAANRYVGAVTDVRAIADCVRAKSRALLVVDVDSFAPYRVVDVEQMGADVLALDVASLGGPSIGALVFKDDATRRAVFRSEHGVGVGGVSEGLLGGVAEAVDHLARLDDSARGTRRTRLKTGLPHAADYLNSLATHLVEGLQTLGTVHVIGVDGDGPVLEEFASVDRVPRVSFLVDGVPAGVVVQRLLANGVVAGVVAPGQSQLLERMGVFEEQPAAPGANSRGRHVRKGADSGADSDTASAADAASALGSSLDQAGAVSVGFAPHNTVHDVDQLVRVVASVR
>LS483459.1|SQI18934.1|340319_341093_+|regulatory-protein
MLLLWFRRLPRGQWWWKSAVLGVVNIGGFFALLFAAAYLLPGGVAAIVTNTAPLWVIALSPALLGTRIQPYQVIGALVAVVGVACLVLTPAAALNTGGILAGLGASVCMGLGAILAKKWGKPDDVPQLAVTGWQLTFGGLFLVPLLLVMEGLPDHLTGQNVLGYAYLTIFGALIAYGIWFNGLAKLDVVQVAILGVLSPVTATFLGVVFVGERLSLVQWVGLLLVLAALVLVQTGGWPRRGIGRGARGRGRLTKPRA

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Crispr_ID: LS483459_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483459_2

336413-336561

Orphan

Consensus_repeat	Method
TTCCCGTTCTAGCGACATTCTGGCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of LS483459_2

>merge|LS483459|2|336413-336561|CRISPRCasFinder
TTCCCGTTCTAGCGACATTCTGGCCTTGCGGGAGGTTGCTTGAGCCTGATTTAACTGGTGCTTTCCCGTTTTAGCGACATTCTGGCCCGCCAAGAGCCCCGCGCAGCCTGCTCCGGCCGACGTATTCCCGTTCTAGCGACATTCGCAGT

>LS483459|2|2|336413-336561|CRISPRCasFinder
TTCCCGTTCTAGCGACATTCTGGCC	TTGCGGGAGGTTGCTTGAGCCTGATTTAACTGGTGCT
TTCCCGTTTTAGCGACATTCTGGCC	CGCCAAGAGCCCCGCGCAGCCTGCTCCGGCCGACGTA
TTCCCGTTCTAGCGACATTCGCAGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483459.1\|SQI18964.1\|348275_349064_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213235
LS483459.1\|SQI18932.1\|337581_338469_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
LS483459.1\|SQI18929.1\|335389_335716_-\|transposase-for-insertion-sequence-element	unknown	unknown	gnl\|CDD\|310261
LS483459.1\|SQI18920.1\|329754_330465_-\|hypothetical-membrane-protein	unknown	unknown	gnl\|CDD\|377229
LS483459.1\|SQI18916.1\|327066_328572_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI18961.1\|347547_348279_-\|ABC-transporter-inner-membrane-protein	unknown	unknown	unknown
LS483459.1\|SQI18913.1\|325917_326244_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI18931.1\|336681_337470_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
LS483459.1\|SQI18934.1\|340319_341093_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|273359
LS483459.1\|SQI18926.1\|333681_334827_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI18917.1\|329114_329789_-\|GtrA-like-integral-membrane-protein	unknown	unknown	gnl\|CDD\|225155
LS483459.1\|SQI18936.1\|342871_345946_+\|cell-surface-protein	unknown	unknown	unknown
LS483459.1\|SQI18933.1\|338816_340184_+\|aminotransferase	unknown	unknown	gnl\|CDD\|273906
LS483459.1\|SQI18924.1\|331526_333359_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235531
LS483459.1\|SQI18914.1\|326268_327042_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	unknown
LS483459.1\|SQI18921.1\|330614_331523_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|224137
LS483459.1\|SQI18955.1\|345976_346873_-\|transposase	unknown	unknown	gnl\|CDD\|222853
LS483459.1\|SQI18912.1\|324373_325786_-\|decaprenylphosphoryl-beta-D-ribose-2-epimerase-subunit	unknown	unknown	gnl\|CDD\|223354
LS483459.1\|SQI18958.1\|346869_347169_-\|transposase	unknown	unknown	gnl\|CDD\|225511
LS483459.1\|SQI18935.1\|341164_342166_-\|quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180

Protein	Function_ID	Function_description	E-value
LS483459.1\|SQI18964.1\|348275_349064_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.70687e-63
LS483459.1\|SQI18958.1\|346869_347169_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.70395e-08
LS483459.1\|SQI18929.1\|335389_335716_-\|transposase-for-insertion-sequence-element	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	1.9571e-15
LS483459.1\|SQI18935.1\|341164_342166_-\|quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	7.02742e-157
LS483459.1\|SQI18920.1\|329754_330465_-\|hypothetical-membrane-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.26544e-21
LS483459.1\|SQI18932.1\|337581_338469_-\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	6.97915e-68
LS483459.1\|SQI18931.1\|336681_337470_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.04794e-116
LS483459.1\|SQI18934.1\|340319_341093_+\|regulatory-protein	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.91378e-36
LS483459.1\|SQI18924.1\|331526_333359_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|235531	PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.	0
LS483459.1\|SQI18917.1\|329114_329789_-\|GtrA-like-integral-membrane-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	3.64194e-20
LS483459.1\|SQI18933.1\|338816_340184_+\|aminotransferase	gnl\|CDD\|273906	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. [Unknown function, Enzymes of unknown specificity].	3.63617e-66
LS483459.1\|SQI18921.1\|330614_331523_-\|glycosyltransferase	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	1.50315e-48
LS483459.1\|SQI18955.1\|345976_346873_-\|transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.16049e-47
LS483459.1\|SQI18912.1\|324373_325786_-\|decaprenylphosphoryl-beta-D-ribose-2-epimerase-subunit	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.77241e-57

>LS483459.1|SQI18929.1|335389_335716_-|transposase-for-insertion-sequence-element
MDVHKYTYQTAWSDEDQEFVATVTEFPSLSWLAPDRAQAEARLLDLVAEVVEDMTQAGETVPEPLGLRRFSGKFNVRTSPSLHRMLAIEAQSEGVSLNTLVNQKLAAR
>LS483459.1|SQI18926.1|333681_334827_-|Uncharacterised-protein
MTGDNTNASTSTSATSKNAQPTKPASTKPSAYTPAKHHQPVKHLVDVRRIDPSQARKWQRWAERGEAVRLARGIYIPAGLWREIGQQPNAAEIQAQAFIVAEYLRYSHKIPAVVAGKSAAFLHGLPLEKFEPPETVELASPKRSLMGRNGRSERYLAAPGQGQRAVLIPTEFGEIWTSGLLDTCHDLGLRHSLDDAVIATEAALHTKKITWHEWRKWRAWQDGLRDPAATPATAPIRHGAQRARTAARLITRFSESPRESQLKIRFWEHDLPAPFQQVNILNEGGWPIGRVDMFFDVGLAVEYDGREKYGSTTPAIERALLKERQRENDIQARGITLLRVTAETYLSGCAVEQVSEHFHILAARPTRPPCTLWSGGALAWS
>LS483459.1|SQI18924.1|331526_333359_-|long-chain-fatty-acid--CoA-ligase
MTNPAGDNGAGTPAGNEEATPAGTPAGDGATASEAFNSKAWLQHYTPWTQHTIDLDDPAENPAGFTIPEVFWHAVDTIGERNAFTFFGKATTYEQYGHQVAIASAALEKLGVQRGDHVAIALPNCPQALIAFYAIQNIGAVPTLHNPLYTAPELRHPFNDHGAKVAFFWDKVGDVAETLRLNSPLETVIAVTLPDEMPAPLRYALKLPIPKIKAMKDKLTGPAPAAVSWKSFMRTGGNGEKWLRGGVKNIKIDPTDPALILYTSGTTGKPKGAVLTHRNLIANLRQGQAWVKGLGKGPKPEVMLAALPIFHAYGLTMNITLAPMIGGEIQLLPAPEMPLVMRVMKKNMPSWMPGVPALYQNIMKEAAKRDMPLSGIRNSFSGASALPAETVREWESCTGGNIVEGYGLTETAPIIAGNPMGKGREGYIGVPFPSTEIRIANPDNPAETMPDGEAGELVVRGPQVFKGYLNRPDATAEAFHEDWFRTGDMAVMEADGYLKIVSRIKEMIITGGFNVYPAEVEEVLCEHPSIEQASVVGVGRKDGSETVAAAVVLADGAVIDADDFRAFAKERLTAYKVPKVFHAFQELPADQLGKVRRREVQELVAEKEQA
>LS483459.1|SQI18921.1|330614_331523_-|glycosyltransferase
MPLSRKDTAAAVIVTHNRVKLLEASLRQVANQEGAEVAHVVVVDNGNDPAVRELVEAVCGSRGHYVGSATNLGGAGGFALGFLTALSLGVDAIWCADDDGRPADEHVLATLQEVAEREGLEEISPVVCNIEDPERLAFPLRQGLVWRRTLSELEGSFLPGIASLFNGALISARAMEIIGVPDYRLFIRGDEVEYHRRLVRSGLPFGTCLTCAYLHPDGSDEFKPILGGKMHTQYPDNEFKRFFTYRNRGYIMNQPGMRKLLPQEYARFGWFFLVQKKDPKGFAEWLRLHALGRREQFRRPGK
>LS483459.1|SQI18920.1|329754_330465_-|hypothetical-membrane-protein
MKLAEVTVSETQTTPSAEPTQPADDAGVNKKNAKDAALSRAHRRRNVARQFIQFGLVGASGFVVNQAIFVLSKKLAEAGWDIHVQDAFLNLLGTQYHFRWYHVFSVVAFLLANIWNFCLNRYWTFRHEPKRAWWKQLPQFMAVGVFGLLITLVVSTALVNPESPIALPQDIFDNSTGLRTRAYWGNFIGVIVAVPANFLFNKLWTFRAKPREASRVVRVVEPRTGGAGSGAGDADV
>LS483459.1|SQI18917.1|329114_329789_-|GtrA-like-integral-membrane-protein
MLVLALVMRMSKPSSNDAINDAPSPQPASDPAGAGHSSGAGAASGAAAGAGNVSAPHAGSGAAADNAAAGNAAAEQGARVGDNFQSEHTTRAQRIIQSQLVKFVLVGGFSAIVDFGSTALFTFAFGLSDGVAKALGFVLGTLTAYFINRRWTFQAEPSGRRFAITMVTYGLTFIVQWGLYKVSIPWLEGFDLNAFWVRAISFVIAQGTATVLNFLIQKFLIFKR
>LS483459.1|SQI18916.1|327066_328572_+|Uncharacterised-protein
MNRSSLYGAAGGYESAGGSTAARANGSGAADGVDAADAPEKARSAEAPIAGGSVISLSQIRTSRRDEADSAAEGAAGSVAEGVSTEGAAKGVSAEGAEVQESLGIMSTPGAGTSRNNGAHTTVFTVVVEHHFPGVGRYSRLLSVSGAMSVADFADAILTSFDWPESVNRVPEAHPTRYVARAERGVGAPDSAVTDVTTEPTWSFRARTAGRVRVYAKGANSIGTALGDIFRRGTIGVLKVGRYDFSVNVTDTTTRHEEIELVPTGSPFDASFDAPGEADAEAVLLAADFLADTEDDAAEAGGVNKNQDDELAARLHPAGIPARVDITEVNVALAGEDTVEQILAETDPELRELLHERALYEFIPLLQALDLERPANVTEHAAELLADAPIEKSKIGRAAAWARIIALSTLVDSEVDEVSEAFMSALGFTRADAKLPPTDTALGTDALSASEIKWLSRRTGRILAQVGASKWEPQPDDQAVPLVPQCSLLDRLEMYRFVLQR
>LS483459.1|SQI18914.1|326268_327042_+|N-acetylglucosamine-6-phosphate-deacetylase
MSTTAPESTAAESGVAASAAGSGTTPNAAPGAPEPVRYDPIMVVAATGPADDPTFAIWQVETDPEVQLGDFSGAWLIDGAGIHGFAASADWIEGTDDRAAMLAALLRYPVLLVGDEAAAKVLPNDVALVDVAATEVALNDALASAKQHFSDEFPGKKQPAWGSFRTLEEFREAEAGVAGAGAGGGAGAAAESDSVANGSGSAAEREAVAVALQEAAALRGWIAQYNAFDKLRVRRLGPVISEFVTAQTLPLVLAQRG
>LS483459.1|SQI18913.1|325917_326244_-|Uncharacterised-protein
MIFPMAVFDRFPAAAKLFKRSKPSPAEQEHRSAPVRVGGVGKESSYEASTRTNLPLNEFMTRLMAQELPILDSTSRQRVRDILREYDGPTITEPEELPEEIRQIMELY
>LS483459.1|SQI18912.1|324373_325786_-|decaprenylphosphoryl-beta-D-ribose-2-epimerase-subunit
MELHTSTRTLTGWGRTAPTTAEVLSTQDVDQIAAAVARVADDNADKPSHLQRGVIARGMGRSYGDPAMNAGGLVIDMQQLNRIHSINPDTAIVDVDAGVTLDQLMKAALPYGLWVPVLPGTRQVTIGGAIGPDIHGKNHHSAGSFGNHVRSMELLVADGRVLHLTPEGSEDDPDGELFWATVGGMGLTGIILRATIEMTKTETAYFIADGDMTHSLDETIAFHSDGSEHNFTYSSAWFDAISPEPKLGRAAISRGSLATLDQLKEYAPKLAKDPLKFKAPQLMTVPDIFPSFTMNKLSMVAIGELWWLKSGEYRNQVQNLTQFYQPLDLIGEWNRGYGSKGFLQYQFVVPTEAVEPFKEIIRDIQRSGHYSALNVFKLFGEGNKAPLSYPMPGWNVCVDFPIKPGLGAFLDDLDRRVMEFGGRLYLAKESRTSAENFHKMYPGLPGWLATRKRVDPTGVFASDMSRRLEL
>LS483459.1|SQI18931.1|336681_337470_-|ABC-transporter-ATP-binding-protein
MVSIDTYDACVDFPIFDAKTRSMKQTFLGAAGGAIGRNSSNTVMVEALKGVNLHLQDGDRIGLVGHNGAGKSTLLRLLSGIYEPTRGSAIVRGRVAPVFDLGVGMDPEISGYENIMIRGLFLGQTRKAMRRKMDDIAEFSELGEYLDMPLRTYSTGMRIRLALGVVTSIDPEILLLDEGIGAVDAAFMAKARGRLVEMVERSGILVFASHSNEFLAQLCDSALWIDHGEVRQVGRVDDVVEAYEGPEAGEHVRKVLKDLGRG
>LS483459.1|SQI18932.1|337581_338469_-|ABC-transporter-permease
MPQKMPEAADLQRITAAAEGDIPASNSQTFGAAWADLKKGLAQRELWLALGWQDIKQRYRRSTLGPLWITIATGVMALALGLLYSLLFQQDLASFLPHVAVGLILWGFISGCIKDGSEVFIANEGLIKQLPSALSVHVYRLVWRQFLFLLHNLVIWLVLLAVFRPSLGWEVLLVVPAMALMIANGIWVTMFFGIIATRFRDVAPLLDSLVQLAFYMTPIVWTTKTLRDQGGAVAERARIAEINPLYHYLEIVRGPMIGEPVPAYHWGIVGVLTVIGLALALLVMRRWRFRVSYWV
>LS483459.1|SQI18933.1|338816_340184_+|aminotransferase
MFDVPRVRGLYASLSDGWTYLNAQDSPQVPERVSSAVARSFRVASLLEPPESATGSHSRAQRLGRRIGESFGDSARTAIADLTGARPENVVLGASREALLDDLAHALYRRLRLGQEVVLSRIDDPANVAPWKHAADLYGARVRWAEPDLSSGVLPAWQFTNLVEPETTVVAVSAANRYVGAVTDVRAIADCVRAKSRALLVVDVDSFAPYRVVDVEQMGADVLALDVASLGGPSIGALVFKDDATRRAVFRSEHGVGVGGVSEGLLGGVAEAVDHLARLDDSARGTRRTRLKTGLPHAADYLNSLATHLVEGLQTLGTVHVIGVDGDGPVLEEFASVDRVPRVSFLVDGVPAGVVVQRLLANGVVAGVVAPGQSQLLERMGVFEEQPAAPGANSRGRHVRKGADSGADSDTASAADAASALGSSLDQAGAVSVGFAPHNTVHDVDQLVRVVASVR
>LS483459.1|SQI18934.1|340319_341093_+|regulatory-protein
MLLLWFRRLPRGQWWWKSAVLGVVNIGGFFALLFAAAYLLPGGVAAIVTNTAPLWVIALSPALLGTRIQPYQVIGALVAVVGVACLVLTPAAALNTGGILAGLGASVCMGLGAILAKKWGKPDDVPQLAVTGWQLTFGGLFLVPLLLVMEGLPDHLTGQNVLGYAYLTIFGALIAYGIWFNGLAKLDVVQVAILGVLSPVTATFLGVVFVGERLSLVQWVGLLLVLAALVLVQTGGWPRRGIGRGARGRGRLTKPRA
>LS483459.1|SQI18935.1|341164_342166_-|quinone-oxidoreductase
MSITTNAIIQTDTENPSSLAWQTTSIADPQPGEALVRIHYAGVNRADTLQAQGHYPPPHGTTDIIGLEAAGVIEDPNGATRPDGSPWHPGDEVAVLLSGGGYSEYATVPEGQLLPIPAGYSLAEAASVVEVACTVWSNIMMTAHLREGDTILFHGGGGGIGIFGIQLAKALGATVAVTAGSEEKLHVCRRYGADILINYKEEDFAEVLAAHGGADVILDIIGAKYLDRNITALAPDGHIVIIGMQGGVKGELNIAKLLNKRGNISATGLRYRDAKDKARIVAETLRNVWPLLENEQITHHIDRIMPIAEAAAAHKALLAGEVTGKIVLELPQS
>LS483459.1|SQI18936.1|342871_345946_+|cell-surface-protein
MANLRGRIIRTGFGARALAFKNNSMKSIAAAGAVLALATTGTVVVQTQTAPTAVAEQDESGNEGTTAGSDKAIYSPGKASQEGTISGSVKEIVEATVPFENVQKSGNPLEGVRIYAQWYEGENTQHSSPVYYTESDANGNFTIKMAPYTDALGVTREFRADASVGTPNGGDWSRDENREKIRVWTVLPEDMTDKYRLVHQPAAGIFPLTTTTPTTQGDGKWGDGKITGMTIQYAQKDKLPQHLPENKWGESTGTNLSGAYKGQAFWNLDVLQGATNHNQASAFDPKDIPAPGLKVVGSYLTDEAVTKIEEYAKANFAGKELRGKGWTPTDEAGLQKWINEQVAADPEGWIAETLTTTTGADGRFQLLWKGLYGNNHTGTGGGINPPADKLHKLAGSHDEGSWNNGNLESKHVNMDWSYVSVLDKDGNPLPDNIGTLYPWALGNWAGPTSGGANAQLFGGDLSYIGNTTDVYTGWNIALAPQALKFDVVDKNTTDNWANLGDKVQTDTAGLPISDNLNYYIEWVDKDGKVVKTCETAKADTATKIPSCELEVPTDAQTGDTFTARLKVTPNNPDPKNDLVLAMDAFAVARDYLAYDPVDAKRGEEATSEPKFDNPATEPEEKKPEKAKFELGELPEGVTEDQVKVDPKTGVVTFTPKDDQAAKAYNFPVIMRNEDLKVPVLDENGAPVKDESGKPKTQGRIVARANATFKLADAPKLTAVDDSGVKPVDPTDEKQDTGVDIVNKDDDTKVSATDEDGKKVPVEVDEDGNVHVTPGTDVDGPITVVVEDPDLPGGKVEVEVPVTDHEKDRDDNGSEKTKVEGDPKPVDPTDEKQDTGVDIVNKDDDTKVSATDEDGKKVPVEVDEDGNVHVTPGTDVDGPITVVVEDPDLPGGKVEVEVPVTDHEKDRDDNGSEKTKVEGDPKPVDPTDEKQDTGVDIVNKDDDTKVSATDEDGKKVPVEVDEDGNVHVTPGTDVDGPITVVVEDPDLPGGKVEVEVPVTDHEKDRDDNGSEKTKVEGDPKPVDRA
>LS483459.1|SQI18955.1|345976_346873_-|transposase
MIRFQFVYDHRTEYSVKRMCHVLKLNRSSFYKWVNTHENRRLKICSDALIGARIKAIFDDENGLYGAKRIAASLNDDTDFGPINHKKVARIMKSMGLKGFSKRRRCITTRRKPGHRVMPDLVGRTFTADEPNRVYVGDITYLPCKGGKNMYLATVIDTYSRKLAGYALADHMRVSLVIEALSHASTVRGSLDGAIFHSDHGSVYTSQAFRDHCAQLGVRQSMGAVGTSADNALAESFNATLKREVLRDRKVFDNPIICRQEVFRWCMRYNTRRRHSWCNLLAPNDFEALTSATLTQAA
>LS483459.1|SQI18958.1|346869_347169_-|transposase
MPRYSEQFKRDAVALYENNEDLSLHAASAELGVNRSSLFSWLQQYGTGKRARTKAMRDNAKETTDSERIRQLEKENAKLREERDILRKAAKYFAEETRW
>LS483459.1|SQI18961.1|347547_348279_-|ABC-transporter-inner-membrane-protein
MIAAFRAELRRLISLRSTGVYAVMLLGCFFGPIIIMAAVYDAEYQGPIDASDIGKCISIFHVLAIIFSGAYTATEIRSGSTAIAFLTQTSRYLSLVAHYVVEGVFLVCAFAIGIPLALLAGMLYPDGLEIGVGALPYWGLYLGIVLVWSSMATSIAVITRSVAAAVATPITWMLLIEQLLAQIPMFDAITPWLPFAASHSLLARSLGEATSVYPALATAFAILSPAFLLGVLSFTLHCKRDAP
>LS483459.1|SQI18964.1|348275_349064_-|ABC-transporter-ATP-binding-protein
MRCMLGLDCPTAGNVLIDGRKLSQHAQPARAAGAVLDTSWFHAGRSGLAHLEVVAASAGLPRSAVHAVLEEVGMSSAARRPMGKYSLGMKQRLGIATAMLGRPRNLILDEPMNGLDPEGMLWMRSYLTNLATQGHAVFISSHLLSEIETLADRILIIGQGHILGEWNMKDFVNSSQNTIIATNDDSRLMGELRNLGVDVNKLPNGLEVSFNQRIPNVLALSRKCHDADILITSLGSSTSTLQQAFLELTATSSDFNARRFQP

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Crispr_ID: LS483459_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483459_3

676579-676682

Orphan

Consensus_repeat	Method
GGTTTGTGGTGGGTTTGTGCGCTGAATGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483459_3

>merge|LS483459|3|676579-676682|CRISPRCasFinder
GGTTTGTGGTGGGTTTGTGCGCTGAATGTCGCTAGAACGGGAATGCGTGCGGTGGCTGGAGTGTGTGGGGTGGGGTTTGTGGTGGGTTTGTGCGCCGAATGTCG

>LS483459|3|3|676579-676682|CRISPRCasFinder
GGTTTGTGGTGGGTTTGTGCGCTGAATGTCG	CTAGAACGGGAATGCGTGCGGTGGCTGGAGTGTGTGGGGTGG
GGTTTGTGGTGGGTTTGTGCGCCGAATGTCG

Protein	Signature genes	Signature genes Name	Protein_function
LS483459.1\|SQI19467.1\|673588_673993_+\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
LS483459.1\|SQI19483.1\|678224_679487_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|237865
LS483459.1\|SQI19474.1\|676810_677014_-\|Co/Zn/Cd-efflux-system-protein	unknown	unknown	gnl\|CDD\|224151
LS483459.1\|SQI19465.1\|673216_673585_+\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
LS483459.1\|SQI19487.1\|680799_681987_-\|subtilisin-like-serine-protease	unknown	unknown	gnl\|CDD\|274856
LS483459.1\|SQI19488.1\|681986_683138_-\|type-VII-secretion-integral-membrane-protein-EccD	unknown	unknown	gnl\|CDD\|378057
LS483459.1\|SQI19455.1\|669661_670207_+\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
LS483459.1\|SQI19473.1\|675838_676402_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
LS483459.1\|SQI19456.1\|670335_671130_+\|methionine-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
LS483459.1\|SQI19491.1\|683371_686548_+\|FtsK/SpoIIIE-family-protein	unknown	unknown	gnl\|CDD\|274858
LS483459.1\|SQI19462.1\|672750_672969_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
LS483459.1\|SQI19452.1\|668330_669665_+\|preprotein-translocase-subunit-SecY	unknown	unknown	gnl\|CDD\|236412
LS483459.1\|SQI19484.1\|679624_680923_+\|Type-VII-secretion-system-protein-eccB1	unknown	unknown	gnl\|CDD\|274854
LS483459.1\|SQI19459.1\|671330_672524_+\|Na+/H+-dicarboxylate-symporter	unknown	unknown	gnl\|CDD\|366058
LS483459.1\|SQI19496.1\|688082_688370_+\|WXG-domain-containing-protein	unknown	unknown	gnl\|CDD\|274862
LS483459.1\|SQI19480.1\|677376_678375_+\|tRNA-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|234577
LS483459.1\|SQI19494.1\|686584_687931_+\|type-VII-secretion-associated-protein,-Rv3446c-family	unknown	unknown	gnl\|CDD\|274863
LS483459.1\|SQI19477.1\|676959_677271_-\|Co/Zn/Cd-efflux-system-protein	unknown	unknown	gnl\|CDD\|224151
LS483459.1\|SQI19469.1\|674019_674625_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
LS483459.1\|SQI19471.1\|674769_675783_+\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359

Protein	Function_ID	Function_description	E-value
LS483459.1\|SQI19467.1\|673588_673993_+\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	6.50554e-83
LS483459.1\|SQI19483.1\|678224_679487_-\|Uncharacterised-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	4.65145e-05
LS483459.1\|SQI19474.1\|676810_677014_-\|Co/Zn/Cd-efflux-system-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	4.19278e-09
LS483459.1\|SQI19465.1\|673216_673585_+\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	2.55694e-78
LS483459.1\|SQI19487.1\|680799_681987_-\|subtilisin-like-serine-protease	gnl\|CDD\|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	3.65098e-31
LS483459.1\|SQI19488.1\|681986_683138_-\|type-VII-secretion-integral-membrane-protein-EccD	gnl\|CDD\|378057	pfam08817, YukD, WXG100 protein secretion system (Wss), protein YukD. The YukD protein family members participate in the formation of a translocon required for the secretion of WXG100 proteins (pfam06013) in monoderm bacteria, with the WXG100 protein secretion system (Wss). Like the cytoplasmic protein EsaC in Staphylococcus aureus, YukD was hypothesized to play a role of a chaperone. YukD adopts a ubiquitin-like fold. Usually, ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that the classical YukD lacks the capacity for covalent bond formation with other proteins. In contrast to the situation in firmicutes, YukD-like proteins in actinobacteria are often fused to a transporter involved in the ESAT-6/ESX/Wss secretion pathway. Members of the YukD family are also associated in gene neighborhoods with other enzymatic members of the ubiquitin signaling and degradation pathway such as the E1, E2 and E3 trienzyme complex that catalyze ubiquitin transfer to substrates, and the JAB family metallopeptidases that are involved in its release. This suggests that a subset of the YukD family in bacteria are conjugated and released from proteins as in the eukaryotic ubiquitin-mediated signaling and degradation pathway.	2.60284e-08
LS483459.1\|SQI19455.1\|669661_670207_+\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	1.44272e-98
LS483459.1\|SQI19473.1\|675838_676402_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	1.05484e-55
LS483459.1\|SQI19456.1\|670335_671130_+\|methionine-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	8.57921e-130
LS483459.1\|SQI19491.1\|683371_686548_+\|FtsK/SpoIIIE-family-protein	gnl\|CDD\|274858	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking].	0
LS483459.1\|SQI19462.1\|672750_672969_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	1.44567e-48
LS483459.1\|SQI19452.1\|668330_669665_+\|preprotein-translocase-subunit-SecY	gnl\|CDD\|236412	PRK09204, secY, preprotein translocase subunit SecY; Reviewed.	0
LS483459.1\|SQI19484.1\|679624_680923_+\|Type-VII-secretion-system-protein-eccB1	gnl\|CDD\|274854	TIGR03919, putative_membrane_protein, type VII secretion protein EccB, Actinobacterial. This model represents the transmembrane protein EccB of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccB1, EccB2, etc. This model does not identify functionally related proteins in the Firmicutes such as Staphylococcus aureus and Bacillus anthracis. [Protein fate, Protein and peptide secretion and trafficking].	1.71787e-53
LS483459.1\|SQI19459.1\|671330_672524_+\|Na+/H+-dicarboxylate-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	8.13446e-84
LS483459.1\|SQI19496.1\|688082_688370_+\|WXG-domain-containing-protein	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.62123e-21
LS483459.1\|SQI19480.1\|677376_678375_+\|tRNA-pseudouridine-synthase-A	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	7.55593e-100
LS483459.1\|SQI19494.1\|686584_687931_+\|type-VII-secretion-associated-protein,-Rv3446c-family	gnl\|CDD\|274863	TIGR03931, T7SS_Rv3446c, type VII secretion-associated protein, Rv3446c family, C-terminal domain. Members of this protein family occur as part of the ESX-4 cluster of type VII secretion system (T7SS) proteins in Mycobacterium tuberculosis and in similar T7SS clusters in other Actinobacteria genera, including Corynebacterium, Nocardia, Rhodococcus, and Saccharopolyspora. This model describes the better-conserved C-terminal region. [Protein fate, Protein and peptide secretion and trafficking].	1.44572e-37
LS483459.1\|SQI19477.1\|676959_677271_-\|Co/Zn/Cd-efflux-system-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.30852e-08
LS483459.1\|SQI19469.1\|674019_674625_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	1.10788e-118
LS483459.1\|SQI19471.1\|674769_675783_+\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.6977e-175

>LS483459.1|SQI19473.1|675838_676402_+|50S-ribosomal-protein-L17
MPTPKKGARLGGSASHQKKILSNLAAQLFEHGAIKTTDAKAKLLRPYVEKIITKAKRGTLADRRNVLKLIPNKEVVAYLFNELAPKFEGRPGGYTRIIKLENRKGDNAPISQISLVTEQLASTEAERANRVAASKAKKAEAEAAEAKAEEAEEAPEVEADTATDKAAEAEAAEAADEAKAEEAAEDK
>LS483459.1|SQI19471.1|674769_675783_+|DNA-directed-RNA-polymerase-subunit-alpha
MLISQRPALTEEFIDDSRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSLRIEGVLHEFTTIPGVKEDVSDIILNIKSLVLSSDSDEPVSMFIRKEGPGEVTGADVEVPAGVEVHNQDLHIATLNEQGKLEIEMTVERGRGYVPAATASSEIGRIPVDQIYSPVLKVSYKVEATRVEQRTDFDKLVLDVETKNSITARDAMASAGKTLVELFGLAQELNHEAEGIEIGPSPQESEHIAAYSMPIEDLNFSVRSYNCLKREEIHTVGELAARTESDLLDIRNFGQKSINEVKVKLAGLGLGLKDAPEGFDITDIEGYDAETGEFIDTEGEDIAE
>LS483459.1|SQI19469.1|674019_674625_+|30S-ribosomal-protein-S4
MARYTGPVTRKSRRLRVDLVGGDNSFERRPYPPGQAGRARIKESEYLLQLQEKQKAKYTYGVLEKQFRRYYAEANRRPGKTGDNLVILLESRLDNVVYRAGLARTRRQARQLVSHGHFTVNGKKVNVPSYKVSQYDIIDVREKSRSMLWFEEAQEALVDTIVPAWLQVVPSTLRILVHQLPERAQIDIPLQEQLIVELYSK
>LS483459.1|SQI19467.1|673588_673993_+|30S-ribosomal-protein-S11
MPPKTRSGARRTGRRVVKKNVANGHAYIKSTFNNTIVSITDPKGAVISWASSGHVGFKGSRKSTPFAAQMAAESAARKAMDHGMKKVDVFVKGPGSGRETAIRSLSTAGLEVGTIADVTPQPHNGCRPPKRRRV
>LS483459.1|SQI19465.1|673216_673585_+|30S-ribosomal-protein-S13
MARLAGVDLPREKRMEVALTYIFGIGPARSKELLEKTGISPDLRSKDLTDEQLSALRDVIENTWKVEGDLRREIQADIRRKIEIGSYQGLRHRRGLPVRGQRTKTNARTRKGPKKTIAGKKK
>LS483459.1|SQI19462.1|672750_672969_+|translation-initiation-factor-IF-1
MAKEGAIEVEGRIVEPLPNAMFRVELDNGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLTRGRIVYRYK
>LS483459.1|SQI19459.1|671330_672524_+|Na+/H+-dicarboxylate-symporter
MNGSRFLNSLIFKIIVAIVLGIVCSLFFPEWAGRVFATFNGLFSNFLGFFVPVLIFALIAPAIASLGQGAGKWLSVTAGIAYVSTIISGLIAYGVAEGLYPSLLGNESMIEAKDIDEGALAPFFSVEMDPPLGVMSALLLAFTVGIAMASMRTEVLFKGAEELREVTMKVIESFIIPLLPFYIFGVFLTMGMNGNLKLTLSQFAKVLILAVLMTWVILALQYLLAGLFAQRNPFTALKNMLPAYFTALGTSSSAATIPVTLECTRKNGVSQSVADFVVPLCATVHLSGSMQKIALFAFSIVYMTGVDMTAGMALGFIFLLGVMMIAAPGVPGGAIMAAVGLLQSQLGFDEGQVALMIAAYIAIDSFGTACNVTGDGAIALAVNRLAKGELRREKQPA
>LS483459.1|SQI19456.1|670335_671130_+|methionine-aminopeptidase
MGFRRRNKKIAAKTAEQLDAMQAAGEIVGLALQEVKKAAEPGKTTLDLDRVAEQVIRDHGATPTFKGYGGFPGSICASPNDMIVHGIPSADVVLKEGDLISIDCGATLNGWVGDSAWTFGIGEIAEEHDRLNRATEWVLYEGLKAMVPGNRLTDVSWALEKATEAAARKFDVELWIVDGYGGHGIGRTMHEDPYLANEGRGGRGPEIQEGSVLAIEPMLALGTADSYVLDDEWSVLTDDGSFSSHWEHTVAATADGPRILTPRK
>LS483459.1|SQI19455.1|669661_670207_+|adenylate-kinase
MRLVLLGPPGAGKGTQASLLSDALKVPHISTGDLFRANISQGTDLGKQAQEYMDAGKLVPTSVTADMVRDRLNQEDAADGFLLDGFPRTIEQAELLEKMLQDDGHSLDAVINYVVSEDVVVDRMLARGRNDDNEDTIRTRLEVYRNETAPLIDHYKDVLLNIDAEGTVEDISCTTLNALDK
>LS483459.1|SQI19452.1|668330_669665_+|preprotein-translocase-subunit-SecY
MSALTSAFKNADLRKKILFSLAMIILYRIGAQIPTPGVDYGAIQAQISELTDSSAMYSLINLFSGGALLQLSIFAVGIMPYITASIIVQLLTVVIPKFEQLKKEGQSGQAKMTEYTRYLTVALALLQSAGIVALADRRQLLGQGVQVLKDGTGVFGLLVMVLIMTSGAVLLMWMGELITDRGIGNGMSLLIFAGIATSLPAQGASIFSGSGGFVFAGVVVGVLILVVGVVFIEQGQRRIPVQYAKRMIGRRQYGETSTYLPLKVNQAGVIPVIFASSLLTVPILITQIIQSGNPQGAGQDNWWNQNVMSVLTDPAAWQYILLYVALIIFFSFFYVSVQYDPYDQADNMKKYGGFIPGIRPGRPTAEYLGYVMNRLLIVGSIYLAIIAALPNILINMGVQTAQAGGQGQMPFGGTAILILVSVALTTIKQLESQVMQSNYEGFLK
>LS483459.1|SQI19474.1|676810_677014_-|Co/Zn/Cd-efflux-system-protein
MVQGAWLAARNDAAANVLILGAGVVMIFWASAWPDIVVGVVIGLINLSAAKEVFEQARAEEPELEMD
>LS483459.1|SQI19477.1|676959_677271_-|Co/Zn/Cd-efflux-system-protein
MQDNEFSASTLDSRARRLVAWVAALNGLGFVVEVTIALVIGSVALFADAADFLEDTLINVLVLTALGWSVASRRKASYTLAGRIVRWFRVLGWRRAMMLRLMC
>LS483459.1|SQI19480.1|677376_678375_+|tRNA-pseudouridine-synthase-A
MTETSQAQQLSQATSAVPASQPNQAGELVRVRLDVAYDGTDFHGWATQSGGLRTVAGVLQEKLSLVTRHPIELVVAGRTDAGVHASGQVCHADIPADAFEQRSLTRPEDLVRRLSRMLPADVRLHGASAAPQGFDARFSALRRHYIYRVTTHPAGPVPVRARDTAAWRHPIDLGKTQAASDALIGLNDFAAFCKAREGATTVRELQEFRWVDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAALTVGSGKRPEDFTPGLLKETKRSSAVPVAPAEGLNLVRVDYPADEELAERALTTRAKRSPVGSGSGSAGAGAGATEPDTAPDAEPDTAP
>LS483459.1|SQI19483.1|678224_679487_-|Uncharacterised-protein
MGSVALFAADSADARHTAWWTWVLCALVAIGCIAAGWLAFARSRATTDQGTRWFRLLCVHDRLWGEPSSRRISADRLAGGLGLSLVDATLSTATVPTKPFGRGWLGDASATLVGVPEHAAARMPFAASGCGVWALPAEAPPEGTQVSGLAEQLSVPAAPGWFIGLTDAGESMLVHPIPGATFAVFGTSGQLRALEGSMNWPEELFELRRLSGNAASANGMANPTGDEGTKTQVLLVEVPAASRGPRNPHSSHSSRNGSVGFAAAEDVLAQGRERLQLLGRPTVDVYIAVPPVGTGTILAHGEHREYFNFFAVTAPAPKPAPKPAPQPVPQNAPVAAPATAPTAGAATPAPARSRRAKHRRARPNAHKHRFPHGAVSGSASGAVSGSVAPAPAPADPLPLPTGERLARVVSARSASSSSAG
>LS483459.1|SQI19484.1|679624_680923_+|Type-VII-secretion-system-protein-eccB1
MRTTGIQVSGFNFLLRRLELALVIGDPRMAHDPLRSQRRALVVGVLLSLLIAGGAVMLGLLRPQPSLDGADLVADETGTLHLRLEDSYHPITNVASARLILQQPVEVQKTTAEQLSQVPLGQPIGIPQVPALSAAPDREWLYCDRSAGGVGTVVAVEHIKEHRHALLAAPSGYWLIDATTRARITPDAARAFGTEAVPASDGLVQQFRRSPDIAMPAGKTKMPAPFDVAGRVITSGDRAFLVDRAGVGEVKGSRRDFALASSPVPPMEASLADVMRQPSVDVLAGIPEFDNEQPVTWAQPQMVCAGPQGLAEPEEGDGAGAGASAGGGQGVDSAGISAVLAAEDPTAFYGPRGTSALKTERGYVLVSDNGVRYSVGSQAELRALGFTSERKVQFARVASLPDGGLLSAEKARQTTVAMMPSASTRESTTGTE
>LS483459.1|SQI19487.1|680799_681987_-|subtilisin-like-serine-protease
MIIQDSSPHGNCQEGSVAAPGTVPLPDIDAPSYPALHALSRGRDVDVAVIDTGSAGPSVVGDRDFCILHGSVVTSVLRAIAPEAKVHSFRHNAVASRAEGTVEDLVRAIDRALKARVKVINISMVACEDTAELREAIGRAEKAGVLVVASTGNTGQCPEGAPTFPSSLDPVLAVGAVAPRAQELVATDAGSSAGAAPDAAAGTSTGASAVKTNSADQGRVPAQYSAPTHWVDLFAPGGPVEGQVDVHGKAHTIVGNPDPFEGTSFAAPVVSGTAALVWQIVPQLSVQEVRELLTATATPGASGPGLDKQILVVNPAAAVDRALDLQDARASDGSADARYELQTVSTQPHQPEAADYSVPVVLSLVLALGIIATVVCRAFSADSRPPSGSEATRAN
>LS483459.1|SQI19488.1|681986_683138_-|type-VII-secretion-integral-membrane-protein-EccD
MLALSISVPAKGTTINAAIADHVPVAELIPHLVDAEPGEHWTLHRAVGQVQPQHTLAEAGVRPGESLTLQIATVPAPPAEAVEELSGPIPASPAAWIAAAIVALFSLQATPAWHPLDNQLVGAGGVLNLNHSADTATIVATAVAALAAAAASLHHRNFTYLAAILGFGLGLHVNVLCACFVAALMVWRSGPARIVTATWVAFAAVNFWPGVTLLLAMFALAYSGQIAIGLAGIKLPKVPATGVFTQPTTTPAGQVVEVHSALVVAIVAVLGACVYQLAPWGEPLSLWRAALLVLVAVLGVSARSTRPVHSVALAVLSATTILWLALHEPWGAACLVLVGLPAVRVQSPMLGRVIDMVEAVAFCLAIPLALQTTGIFEAIRGIG
>LS483459.1|SQI19491.1|683371_686548_+|FtsK/SpoIIIE-family-protein
MQTQAPPTLPKDKQPFIRLLMPAVMLIAVVGMVAAMVLSGSGRNPISFIFPLMMLGSMAMMFQPGTNVDETRRSFHRHIDALKDSVQRSHDEQLQGMLAAHPHPQALWTHVHTGTDVTAEPGVVRIGTAVQTPDDPLEVPVNAPPEDLEPVSAMSLREVALRYATIEAPVSVELASFHCIVLLGDGAAGLARAMQAQLAMQDPDIIGITGPFEEWLPHDGPRKVHFCTGESPVVAGAVVTDPSEEWVENAKGHGLLLQVDDAAGGCLLSAWTVDGWVPFGVADQLSEVELAQICRARSTVKSSTSLLELPGGDLRAPIGFSGAPVYLDIKESALGGIGPHGLCVGATGSGKSELLKSVVISFAHQHSPEELNFVLVDFKGGASFLGMDRLPHTSALITNLAEEAGLVDRMQDSLLGEMHRRQEKLRAAGLTTAAEYNRAYPGQMPALFIVVDEFSELLHARPEFAEVFAAIGRLGRSLRMHLLLATQRLEEGRLRGLESHLSYRIALRTFSASESRALIGTTEAYELPATPGAAILSAGDKVRFHSAYVSGPELPRDQRLVRVLGSTVEAETTTMQMVIDRLEGPNKNPVWLPPLPEDLPASEVMEPRAPGVARIGLEDLPFEGLQVPMDVDLRRKHWAIVGQPRTGKTTAVRSLVLGWVLSSPGWPVYIFDPGGGLQDLARLPQVAAVVGPDGLTRLFDEMEQTEGQRLLIIDGLDQVGTASGGAGEEDQRLIRLATTGLERGLHVVVAALRWNFRPSLRDVLTGQIELRMTPLDAHFREAQKSLPDVPGRGVSPRGKHVQFANSTAQDVEHVRMESARRGEPEVAMRVLPERIGWDELGDPQAFAIGGPRLDPVRWDRSTFPHLVAIGQAGSGVTTALRAVMQSVADTRSHTGEPPEFLVTDTRRGLLGVAGYRVPEDFRADLAEWVSTLRGRIPGSDVTPQQLRERSWWSGPELFVVVDDADADPGLDQLLPLLPYAADIGLHLVLGRRSGQFARAAYQPLTQAMRDQSAWLLFSAPREDGPIAGVRLVRRPQGRAAYVHKETWTVHVAEVAEQN
>LS483459.1|SQI19494.1|686584_687931_+|type-VII-secretion-associated-protein,-Rv3446c-family
MSGVGKMRVEQKIGEARGLLAEALALQESGVLVSGMTVTDLATGFVVTGDAEMQRPGYLQYEGADSRAGAAGTVDPMEAAGETLDVEFQRSGLSLGRLSELFEMVSEVLEQREDHPEAAAVNPPEPRELFPWGIGLREVDVLVTGSFAVQVVHYLRIMGVRARLVDNDMVLRVASELALAQQELEHLDLAEPARQRETDSAAAQPAEKAEEWQEVEERASIEKEERKDNRRLSAALAALALFIIGGLVATFTVFDSQAAENTASTGNTGIADSAASATGSLSVESEESFADEPGSEKTGEEATEPFPEPHRRGVTTADQSSRRADIPISVNVDGWHLGGATRAREEYIGDDEGMRVLVAAKETPLKTQEEMDAAMLGALNDVSAGDSEVTVVSTQPVSYEENYPSSTTLWHVRLVDGHQISVGCQYRQWNEQREKVCQEFVATARPEK
>LS483459.1|SQI19496.1|688082_688370_+|WXG-domain-containing-protein
MSFKTDVSTMNQAANNVDRVKDEVQGELSRLRGVVDDVSGSWKGQAQTSFHSLMERWDENARKLNEALQSIAENIRANAGDFDTTDVDNAAAFNA

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Crispr_ID: LS483459_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483459_4

1901542-1904072

TypeI-E

I-E

Consensus_repeat	Method
GTGCTCCCCGCGCCAGCGGGGATGAGCC	PILER-CR
GTGCTCCCCGCGCCAGCGGGGATGAGCC	CRISPRCasFinder
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	CRT

41 spacers

cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LS483459_4

>merge|LS483459|4|1901542-1904072|PILER-CR,CRISPRCasFinder,CRT
GTGCTCCCCGCGCCAGCGGGGATGAGCCGGTTGTGTTCAGGTGGTCGGCTGGGTCTTCCAGGTGCTCCCCGCGCCAGCGGGGATGAGCCGGAGCGTATTGTCTCGCGCGTTGACATATTGGGGTGCTCCCCGCGCCAGCGGGGATGAGCCGGCTATCGACGGCCTCACAGACAAGGTTAAGGGGTGCTCCCCGCGCCAGCGGGGATGAGCCTCGCCCTAATCTTCTCCTCCACCGAGCTTGTAGGTGCTCCCCGCGCCAGCGGGGATGAGCCGGCCACGGCTGCATGGGAGGGCATTAAGAATGCGTGCTCCCCGCGCCAGCGGGGATGAGCCGACCACCGTGGCCTTAGAGGTGATGTAGGTGCAGTGCTCCCCGCGCCAGCGGGGATGAGCCGGGCAAGGGGTGGGTGGTGACGGCGGACGGTCGGTGCTCCCCGCGCCAGCGGGGATGAGCCGTGTATAGGGTTATCGCCCCTGCGCTGGGCGCGGTGCTCCCCGCGCCAGCGGGGATGAGCCTGGTCTTAAAGACCTTCGGCTTAACCTCACGCAGTGCTCCCCGCGCCAGCGGGGATGAGCCGTAGCGGCCTGCCTTGTCCTCGCGGGCTTGCTCGTGCTCCCCGCGCCAGCGGGGATGAGCCCGAGGCCGGGGTTATGGGGTGCGGTGAAGGTTGGTGCTCCCCGCGCCAGCGGGGATGAGCCAGTGCGGGATGAACTGCGCCGCATCCCGAAGGAGTGCTCCCCGCGCCAGCGGGGATGAGCCGGACGCGATCACCCGCAAGGAAGGCAAGAAGCTGTGCTCCCCGCGCCAGCGGGGATGAGCCGTCCACCCACCCCTTCTCCACCATCTCTTTAATGTGCTCCCCGCGCCAGCGGGGATGAGCCGCAAACGATCCAAACCGGCATCGACGGGTTCCGGTGCTCCCCGCGCCAGCGGGGATGAGCCGTCCGCCCACCCCTTCTCCACCATCTCCTTAATGTGCTCCCCGCGCCAGCGGGGATGAGCCGCAGCGTTACGGTGGCCCCGGTGCTGTGTGGCCGTGCTCCCCGCGCCAGCGGGGATGAGCCGTCTTCCGCGCCTGCTCCGCAAACGCCATCGACGTGCTCCCCGCGCCAGCGGGGATGAGCCGGGCGATAAGGGTGACCCTGGTGGTGTGCGGGGGTGCTCCCCGCGCCAGCGGGGATGAGCCGGTATCTAGCCCGTCGCGCAACCCCTTGAAAGTGTGCTCCCCGCGCCAGCGGGGATGAGCCGGTCGACCGCTACGCCCCTAGTACCCTCGGCAGGTGCTCCCCGCGCCAGCGGGGATGAGCCGCCGATGTAGTAGTTCAGCCGTGTAGGTAGCCAGTGCTCCCCGCGCCAGCGGGGATGAGCCGGCATCCGTGGTCGATTGAGGTTTGGATGAGGTGTGCTCCCCGCGCCAGCGGGGATGAGCCGTTTTTCGGTGAAGGTGAAGGTTTTGGAGTTGGGTGCTCCCCGCGCCAGCGGGGATGAGCCGGCTAAAAGCTTTAAGGAGTCCATCGGCAAGATGTGCTCCCCGCGCCAGCGGGGATGAGCCTGAGTGCTGCAACCCCATATCGCGTCGAAACACGTGCTCCCCGCGCCAGCGGGGATGAGCCGGGCACGCCCGGTGACCGACTACGCCGCGAGATGTGCTCCCCGCGCCAGCGGGGATGAGCCGACTACTGACGCGCTTGGCGATGGTGACGAGAAGTGTTCCCCGCGCCAGCGGGGATGAGCCGTACCAGAAGGCTGTGGTTTCTGGGAATTCTGGGTGCTCCCCGCGCCAGCGGGGATGAGCCTGGAACGCAACCGGGATAAAAACCCGCCACGGTGTGCTCCCCGCGCCAGCGGGGATGAGCCGTACCAGAAGGCTGTGGCTTCTGGGAATTCTGGGTGCTCCCCGCGCCAGCGGGGATGAGCCAGGAGAAGGCGCTAGCGGAGGCGCGTAAGGCTCTGTGCTCCCCGCGCCAGCGGGGATGAGCCTGCGTACGGTGTGATTAACCCGGCGCTCCGGTCGTGCTCCCCGCGCCAGCGGGGATGAGCCGCCGATCGAGAAGTGCGGCAGCTCTTCGGCGGAGTGCTCCCCGCGCCAGCGGGGATGAGCCTCTTTCGATCTGCCATGTCATCACCTCCCTAGGGTGCTCCCCGCGCCAGCGGGGATGAGCCGCAACGCTCAGCACTTGATTGGACTCGTCGCGCGTGCTCCCCGCGCCAGCGGGGATGAGCCGGTGTTTGAGTGCGGCGGGGTGGCCAGTGTCAGGTGCTCCCCGCGCCAGCGGGGATGAGCCGGAGGGGAGCGCGGCGGCGAACGTGTTTAAGACGTGCTCCCCGCGCCAGCGGGGATGAGCCGTTCGCGCTGTTCAGTGTCAGAGAGTGCCATGAGTGCTCCCCGCGCCAGCGGGGATGAGCCGTCGATCCGGTTGCCGTTATGTAGGTTCACACAGTGCTCCCCGCGCCAGCGGGGATGAGCCGTCCAGGTCCCAGTGGAAGAAGGCTTGTTCCTGGTGCTCCCCGCGCCAGCGGGGATTAGCCT

>LS483459|4|1|1901542-1904071|PILER-CR
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGTTGTGTTCAGGTGGTCGGCTGGGTCTTCCAG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGAGCGTATTGTCTCGCGCGTTGACATATTGGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGCTATCGACGGCCTCACAGACAAGGTTAAGGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TCGCCCTAATCTTCTCCTCCACCGAGCTTGTAG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGCCACGGCTGCATGGGAGGGCATTAAGAATGC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GACCACCGTGGCCTTAGAGGTGATGTAGGTGCA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGGCAAGGGGTGGGTGGTGACGGCGGACGGTCG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTGTATAGGGTTATCGCCCCTGCGCTGGGCGCG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TGGTCTTAAAGACCTTCGGCTTAACCTCACGCA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTAGCGGCCTGCCTTGTCCTCGCGGGCTTGCTC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	CGAGGCCGGGGTTATGGGGTGCGGTGAAGGTTG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	AGTGCGGGATGAACTGCGCCGCATCCCGAAGGA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGACGCGATCACCCGCAAGGAAGGCAAGAAGCT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTCCACCCACCCCTTCTCCACCATCTCTTTAAT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GCAAACGATCCAAACCGGCATCGACGGGTTCCG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTCCGCCCACCCCTTCTCCACCATCTCCTTAAT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GCAGCGTTACGGTGGCCCCGGTGCTGTGTGGCC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTCTTCCGCGCCTGCTCCGCAAACGCCATCGAC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGGCGATAAGGGTGACCCTGGTGGTGTGCGGGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGTATCTAGCCCGTCGCGCAACCCCTTGAAAGT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGTCGACCGCTACGCCCCTAGTACCCTCGGCAG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GCCGATGTAGTAGTTCAGCCGTGTAGGTAGCCA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGCATCCGTGGTCGATTGAGGTTTGGATGAGGT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTTTTTCGGTGAAGGTGAAGGTTTTGGAGTTGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGCTAAAAGCTTTAAGGAGTCCATCGGCAAGAT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TGAGTGCTGCAACCCCATATCGCGTCGAAACAC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGGCACGCCCGGTGACCGACTACGCCGCGAGAT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GACTACTGACGCGCTTGGCGATGGTGACGAGAA
GTGTTCCCCGCGCCAGCGGGGATGAGCC	GTACCAGAAGGCTGTGGTTTCTGGGAATTCTGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TGGAACGCAACCGGGATAAAAACCCGCCACGGT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTACCAGAAGGCTGTGGCTTCTGGGAATTCTGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	AGGAGAAGGCGCTAGCGGAGGCGCGTAAGGCTCT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TGCGTACGGTGTGATTAACCCGGCGCTCCGGTC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GCCGATCGAGAAGTGCGGCAGCTCTTCGGCGGA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TCTTTCGATCTGCCATGTCATCACCTCCCTAGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GCAACGCTCAGCACTTGATTGGACTCGTCGCGC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGTGTTTGAGTGCGGCGGGGTGGCCAGTGTCAG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGAGGGGAGCGCGGCGGCGAACGTGTTTAAGAC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTTCGCGCTGTTCAGTGTCAGAGAGTGCCATGA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTCGATCCGGTTGCCGTTATGTAGGTTCACACA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTCCAGGTCCCAGTGGAAGAAGGCTTGTTCCTG
GTGCTCCCCGCGCCAGCGGGGATTAGCC

>LS483459|4|4|1901542-1904071|CRISPRCasFinder
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGTTGTGTTCAGGTGGTCGGCTGGGTCTTCCAG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGAGCGTATTGTCTCGCGCGTTGACATATTGGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGCTATCGACGGCCTCACAGACAAGGTTAAGGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TCGCCCTAATCTTCTCCTCCACCGAGCTTGTAG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGCCACGGCTGCATGGGAGGGCATTAAGAATGC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GACCACCGTGGCCTTAGAGGTGATGTAGGTGCA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGGCAAGGGGTGGGTGGTGACGGCGGACGGTCG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTGTATAGGGTTATCGCCCCTGCGCTGGGCGCG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TGGTCTTAAAGACCTTCGGCTTAACCTCACGCA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTAGCGGCCTGCCTTGTCCTCGCGGGCTTGCTC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	CGAGGCCGGGGTTATGGGGTGCGGTGAAGGTTG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	AGTGCGGGATGAACTGCGCCGCATCCCGAAGGA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGACGCGATCACCCGCAAGGAAGGCAAGAAGCT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTCCACCCACCCCTTCTCCACCATCTCTTTAAT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GCAAACGATCCAAACCGGCATCGACGGGTTCCG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTCCGCCCACCCCTTCTCCACCATCTCCTTAAT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GCAGCGTTACGGTGGCCCCGGTGCTGTGTGGCC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTCTTCCGCGCCTGCTCCGCAAACGCCATCGAC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGGCGATAAGGGTGACCCTGGTGGTGTGCGGGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGTATCTAGCCCGTCGCGCAACCCCTTGAAAGT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGTCGACCGCTACGCCCCTAGTACCCTCGGCAG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GCCGATGTAGTAGTTCAGCCGTGTAGGTAGCCA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGCATCCGTGGTCGATTGAGGTTTGGATGAGGT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTTTTTCGGTGAAGGTGAAGGTTTTGGAGTTGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGCTAAAAGCTTTAAGGAGTCCATCGGCAAGAT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TGAGTGCTGCAACCCCATATCGCGTCGAAACAC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGGCACGCCCGGTGACCGACTACGCCGCGAGAT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GACTACTGACGCGCTTGGCGATGGTGACGAGAA
GTGTTCCCCGCGCCAGCGGGGATGAGCC	GTACCAGAAGGCTGTGGTTTCTGGGAATTCTGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TGGAACGCAACCGGGATAAAAACCCGCCACGGT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTACCAGAAGGCTGTGGCTTCTGGGAATTCTGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	AGGAGAAGGCGCTAGCGGAGGCGCGTAAGGCTCT
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TGCGTACGGTGTGATTAACCCGGCGCTCCGGTC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GCCGATCGAGAAGTGCGGCAGCTCTTCGGCGGA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	TCTTTCGATCTGCCATGTCATCACCTCCCTAGG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GCAACGCTCAGCACTTGATTGGACTCGTCGCGC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGTGTTTGAGTGCGGCGGGGTGGCCAGTGTCAG
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GGAGGGGAGCGCGGCGGCGAACGTGTTTAAGAC
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTTCGCGCTGTTCAGTGTCAGAGAGTGCCATGA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTCGATCCGGTTGCCGTTATGTAGGTTCACACA
GTGCTCCCCGCGCCAGCGGGGATGAGCC	GTCCAGGTCCCAGTGGAAGAAGGCTTGTTCCTG
GTGCTCCCCGCGCCAGCGGGGATTAGCC

>LS483459|4|1|1901542-1904072|CRT
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GTTGTGTTCAGGTGGTCGGCTGGGTCTTCCAG
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GAGCGTATTGTCTCGCGCGTTGACATATTGGG
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GCTATCGACGGCCTCACAGACAAGGTTAAGGG
GTGCTCCCCGCGCCAGCGGGGATGAGCCT	CGCCCTAATCTTCTCCTCCACCGAGCTTGTAG
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GCCACGGCTGCATGGGAGGGCATTAAGAATGC
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	ACCACCGTGGCCTTAGAGGTGATGTAGGTGCA
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GGCAAGGGGTGGGTGGTGACGGCGGACGGTCG
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	TGTATAGGGTTATCGCCCCTGCGCTGGGCGCG
GTGCTCCCCGCGCCAGCGGGGATGAGCCT	GGTCTTAAAGACCTTCGGCTTAACCTCACGCA
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	TAGCGGCCTGCCTTGTCCTCGCGGGCTTGCTC
GTGCTCCCCGCGCCAGCGGGGATGAGCCC	GAGGCCGGGGTTATGGGGTGCGGTGAAGGTTG
GTGCTCCCCGCGCCAGCGGGGATGAGCCA	GTGCGGGATGAACTGCGCCGCATCCCGAAGGA
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GACGCGATCACCCGCAAGGAAGGCAAGAAGCT
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	TCCACCCACCCCTTCTCCACCATCTCTTTAAT
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	CAAACGATCCAAACCGGCATCGACGGGTTCCG
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	TCCGCCCACCCCTTCTCCACCATCTCCTTAAT
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	CAGCGTTACGGTGGCCCCGGTGCTGTGTGGCC
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	TCTTCCGCGCCTGCTCCGCAAACGCCATCGAC
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GGCGATAAGGGTGACCCTGGTGGTGTGCGGGG
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GTATCTAGCCCGTCGCGCAACCCCTTGAAAGT
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GTCGACCGCTACGCCCCTAGTACCCTCGGCAG
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	CCGATGTAGTAGTTCAGCCGTGTAGGTAGCCA
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GCATCCGTGGTCGATTGAGGTTTGGATGAGGT
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	TTTTTCGGTGAAGGTGAAGGTTTTGGAGTTGG
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GCTAAAAGCTTTAAGGAGTCCATCGGCAAGAT
GTGCTCCCCGCGCCAGCGGGGATGAGCCT	GAGTGCTGCAACCCCATATCGCGTCGAAACAC
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GGCACGCCCGGTGACCGACTACGCCGCGAGAT
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	ACTACTGACGCGCTTGGCGATGGTGACGAGAA
GTGTTCCCCGCGCCAGCGGGGATGAGCCG	TACCAGAAGGCTGTGGTTTCTGGGAATTCTGG
GTGCTCCCCGCGCCAGCGGGGATGAGCCT	GGAACGCAACCGGGATAAAAACCCGCCACGGT
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	TACCAGAAGGCTGTGGCTTCTGGGAATTCTGG
GTGCTCCCCGCGCCAGCGGGGATGAGCCA	GGAGAAGGCGCTAGCGGAGGCGCGTAAGGCTCT
GTGCTCCCCGCGCCAGCGGGGATGAGCCT	GCGTACGGTGTGATTAACCCGGCGCTCCGGTC
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	CCGATCGAGAAGTGCGGCAGCTCTTCGGCGGA
GTGCTCCCCGCGCCAGCGGGGATGAGCCT	CTTTCGATCTGCCATGTCATCACCTCCCTAGG
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	CAACGCTCAGCACTTGATTGGACTCGTCGCGC
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GTGTTTGAGTGCGGCGGGGTGGCCAGTGTCAG
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	GAGGGGAGCGCGGCGGCGAACGTGTTTAAGAC
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	TTCGCGCTGTTCAGTGTCAGAGAGTGCCATGA
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	TCGATCCGGTTGCCGTTATGTAGGTTCACACA
GTGCTCCCCGCGCCAGCGGGGATGAGCCG	TCCAGGTCCCAGTGGAAGAAGGCTTGTTCCTG
GTGCTCCCCGCGCCAGCGGGGATTAGCCT

Protein	Signature genes	Signature genes Name	Protein_function
LS483459.1\|SQI23985.1\|1904606_1904861_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI23989.1\|1906635_1906914_-\|Copper-sensitive-operon-repressor	unknown	unknown	gnl\|CDD\|376835
LS483459.1\|SQI23984.1\|1904228_1904519_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI23988.1\|1905953_1906604_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|377866
LS483459.1\|SQI23998.1\|1909767_1910868_-\|Zn-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|132492
LS483459.1\|SQI23987.1\|1905471_1905672_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI24003.1\|1911473_1912382_-\|transposase-IS3520	unknown	unknown	gnl\|CDD\|222853
LS483459.1\|SQI23916.1\|1889534_1890431_-\|glutamate-ABC-transport-system,-solute-binding-protein	unknown	unknown	gnl\|CDD\|270408
LS483459.1\|SQI23979.1\|1899499_1900174_+\|CRISPR-associated-protein	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
LS483459.1\|SQI23930.1\|1895322_1896957_+\|CRISPR-associated-protein	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
LS483459.1\|SQI23976.1\|1897665_1898796_+\|CRISPR-associated-protein	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
LS483459.1\|SQI24000.1\|1911057_1911372_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI23923.1\|1891368_1892088_+\|nitroreductase	unknown	unknown	gnl\|CDD\|376405
LS483459.1\|SQI23917.1\|1890450_1891179_-\|glutamate-ABC-transport-system,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
LS483459.1\|SQI23974.1\|1897001_1897637_+\|CRISPR-associated-protein	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|378191
LS483459.1\|SQI23926.1\|1892460_1895196_+\|CRISPR-associated-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
LS483459.1\|SQI23995.1\|1909083_1909725_-\|Zn-dependent-hydrolase	unknown	unknown	gnl\|CDD\|293792
LS483459.1\|SQI23977.1\|1898795_1899503_+\|CRISPR-associated-protein	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
LS483459.1\|SQI23991.1\|1906913_1909058_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
LS483459.1\|SQI23981.1\|1900184_1901126_+\|CRISPR-associated-protein	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
LS483459.1\|SQI23989.1\|1906635_1906914_-\|Copper-sensitive-operon-repressor	gnl\|CDD\|376835	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor. This is a family of metal-sensitive repressors, involved in resistance to metal ions. Members of this family bind copper, nickel or cobalt ions via conserved cysteine and histidine residues. In the absence of metal ions, these proteins bind to promoter regions and repress transcription. When bound to metal ions they are unable to bind DNA, leading to transcriptional derepression.	5.09269e-32
LS483459.1\|SQI24003.1\|1911473_1912382_-\|transposase-IS3520	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.7207e-82
LS483459.1\|SQI23988.1\|1905953_1906604_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|377866	pfam07553, Lipoprotein_Ltp, Host cell surface-exposed lipoprotein. This is a family of lipoproteins that is involved in superinfection exclusion. Proteins in this family have been shown to act at the stage of DNA release from the phage head into the cell.	2.64726e-10
LS483459.1\|SQI23998.1\|1909767_1910868_-\|Zn-dependent-alcohol-dehydrogenase	gnl\|CDD\|132492	TIGR03451, S-hydroxymethylmycothiol_dehydrogenase, S-(hydroxymethyl)mycothiol dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. [Cellular processes, Detoxification].	0
LS483459.1\|SQI23916.1\|1889534_1890431_-\|glutamate-ABC-transport-system,-solute-binding-protein	gnl\|CDD\|270408	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold. This group includes periplasmic glutamate-binding domain GluB from Corynebacterium efficiens and its related proteins. The GluB domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.44437e-72
LS483459.1\|SQI23979.1\|1899499_1900174_+\|CRISPR-associated-protein	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	7.90836e-70
LS483459.1\|SQI23930.1\|1895322_1896957_+\|CRISPR-associated-protein	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	2.10553e-114
LS483459.1\|SQI23976.1\|1897665_1898796_+\|CRISPR-associated-protein	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.75386e-163
LS483459.1\|SQI23923.1\|1891368_1892088_+\|nitroreductase	gnl\|CDD\|376405	pfam00881, Nitroreductase, Nitroreductase family. The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds.	2.02195e-27
LS483459.1\|SQI23917.1\|1890450_1891179_-\|glutamate-ABC-transport-system,-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.25598e-156
LS483459.1\|SQI23974.1\|1897001_1897637_+\|CRISPR-associated-protein	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	9.62107e-32
LS483459.1\|SQI23926.1\|1892460_1895196_+\|CRISPR-associated-protein	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.59837e-83
LS483459.1\|SQI23995.1\|1909083_1909725_-\|Zn-dependent-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	7.60944e-49
LS483459.1\|SQI23977.1\|1898795_1899503_+\|CRISPR-associated-protein	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.31685e-52
LS483459.1\|SQI23991.1\|1906913_1909058_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LS483459.1\|SQI23981.1\|1900184_1901126_+\|CRISPR-associated-protein	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	8.18995e-141

>LS483459.1|SQI23981.1|1900184_1901126_+|CRISPR-associated-protein
MAPHPSKSPMDRPILPRVQDRISFLYAERCVVNRDNNAVTFADERGITHVPAASIAALLLGPGTKVTYAAMALLGDSGVSVVWVGEKGVRYYASGRSLSNSSAAAEAQASIVSNQRRRLFCARQMYAMRFPGEDISRATMAQLRGREGSRMKKVYLAEAERTGVPWKKRMYDPQSFSSGDPINRTLTAANAALYGVAHAVIASLGFIPSLGVIHQGTERAFVYDIADLYKAEISIPAAFDAVAENELTADVNIRRVIRDYVVKKNLIPTMIRDLMFLMEMSSEAQNIDAELVLWSDLEVVASKRNWSDDGPIR
>LS483459.1|SQI23979.1|1899499_1900174_+|CRISPR-associated-protein
MTTFTRLHLNPSSRQARKLLGNPQAMHAAVLSCFPKEVGDKERILWRHDGKTRGADEHFVYIVGPDSCDPTKIAEQTGSEHDPQKASYNRLLEALADGQQWHYEVVLNPVAAKKAPGSPRGTRGKLTALVGEAAQLEWFNTKAKSCGFTPLETLIVERKTLRFSKLAKNPKGRQVVIGTVRYRGTLQIDDVETFKKSLVEGIGRGKAYGCGLLTLAKPTPSKTS
>LS483459.1|SQI23977.1|1898795_1899503_+|CRISPR-associated-protein
MPSTLLLRLSGPMQSWGVSSRFKQRATEQVPTKSGVLGLLAAAQGRRRTDDLQDLAALTFAVRVDQPGSLLRDYQTAQPWQKRPKDNANLVTRYYLEDAVFVAAVESDNDSFIDELASAVQRPRFPLFLGRRSCPAPPNLYLGTFRGSAVDALRATDWQATRAHRKTRAPKLSLPIFRDATQGETGIARRDVPISFSQEHREYGWRDVVQDKTGVPVENDLGSTNDPFMEAVMQA
>LS483459.1|SQI23976.1|1897665_1898796_+|CRISPR-associated-protein
MSITIDFHALQTLPPSLINRDDTGAPKTAIFGGAPRQRVSSQAWKRAIRKDFGEKFPTGFVGYRTRRAIELVADRIQELDTSIEEAEATTLSEKVFTAAGFKLTKRKTAKAEGEEVEQKSELGYLLFLSVRQVSNLAQYAIDHREENKFPKREVSVLFDQEHGVDISMFGRMVAEAPDFNVDASVQVAHAIGVHESEPEFDFYTAVDDMVEADEEVGAAMMGTVQMMSSTLYRFATLDVDSLAENLGDQSVLAEAIKAFTESFITSLPTGKQNTFAHNSVPELVYVTVRNDRSISLVNAFEEPVVSENNQGRRKSAADRLAREAEQIQNTYGFVPQAAFVMSLGDLADAFIEIDLAKKTTLPELVEAVAEAATQER
>LS483459.1|SQI23974.1|1897001_1897637_+|CRISPR-associated-protein
MDQTTDDRPRLSSAVAATCSQLQADYLGRTGYPNQARARGTLAELRKSAGQPVDKNPLVFESVLSSLVVLLSEKEVGRGDTPSPSEEAAFHALTFFALHMQGATHEVHDESHSFASACGRLAQTSESKSIKGRFDALVLARTAQSRLIQTRSLISLLRSNDLRFNYGWFAADLRKLSNPRTRNGVLLRWGRDFAFARYPRDIDGSATTQEN
>LS483459.1|SQI23930.1|1895322_1896957_+|CRISPR-associated-protein
MTESFSLLDQPWILTTLTDGSAAELSLREIFDGSHSVASIRGDSPLQDVAIYRLLLTVYWCAHRQELLSDPGTELDMAEWIPDRLEAAAENEPDNTVLNYLERYADRFDLLDPKQPFMQVADLHTSKNATTDVRRIVPDFEDDYFTLRAGDGALSLTYAEAARWLIYVQAYDYSGIKSGAVGDPRVKGGRGYPIGTGWTGAITATIILGENLQETLALNTTGGALQAKNDHPVWEREPDTSAQRLDPANKDGIYPKGPAEILTWQSRRIRLFPDGGLITQVLVSNGDRIPNANANVQDDPMTPYRFSKNKSTKTLDVYYPKPLDSQRTMWRSLEPLIALETDPVYDAKNRAPKRPKTIDQLAYLKENEVDLPETLNVSMTSMEYGPNSAVVGISISTQIELPLEILPKSALNQRQAVLNLAAATSQAGTMLGSFAGQLFQAAGGDYEFQPAATDTLLAELEPKFSEWMKSLHGADLEPRLKAWEMTVRNAVLEHADVLLVGAGPKALVGRIIESNDDERFVSAGTVMNWLQRKLREILPRTVPR
>LS483459.1|SQI23926.1|1892460_1895196_+|CRISPR-associated-protein
MSLVQHMVDSGAVATHLWDTWFSPQTKDFLSRSTRLSPEHIRSLAVFLVAAHDVGKISGPFLRKLRSPETNAPLLYPLENAGIPIPDLTPDEDVANLAHPLYSRELLKRWLKTHGLKAPVALSLTQTVEAHHGWLTAAGRKAVTTFVNSYPPEWQSAVDEILDTLASTAHVQPALDALEGKPPTTAIQIITGFTVMCDWLASNTDFFPLRFSGSQADRIKLGMAKAKFDLHTEFKHFSEDPTQIAENYRVSFAWPESATPRPVQFAVAELLNSNSPGPTLLIIEAPTGEGKTEGALQAALLFAQHNHASGAILAAPTMATANGLFKRFSCWVENITENSAVSSLYLAHSKNRLNKDYRKLRYSDIGEDCADHGTVIATDWLSGRKNGLLSNFVVGTIDQVLMMALQIRHSMLRHLALAGKVVIFDEVHAYSTYTNEYLAETLRWLAAYGVPVILLSATLPTSRKKELVTAYGGQMHKNDLALAGEGYPLLTLVTEEGVSEQAVTPRPDDMHAKVEIIDDSVEELTRLVTELCSDGGVVLVICNTIKRAQEAFTALDSVFPDEVRLHHSAFTGLDRARHEEDLLNELGPASQRKQGRPPLRIVCGTQTLEQSLDIDADALITDIAPMDLIIQRAGRLHRHQRPDSDRPEKLRDARIYIRGVEETTPVPIWDTGTEYIYDDALLLTTYQLLSTEVVETGFRRPSDVPQLVQRAYDLDADHNFPEAWAARWEESKTSSRGKDDSDKSRSKVFRIPSPDETGKRLDSLFEMLVHDRSEEEIKATASVRDADNSIEIIPIVDDEYGYRPLPGLNNDQPECVVEDTTIPNFDTAFQLAASTVRLPTMFTRSDKVWDRTVDALEDQTPEGWKDHYLLRGQVALRLDQNLGATLADVKINYSELLGLRTEGFPGSRNGA
>LS483459.1|SQI23923.1|1891368_1892088_+|nitroreductase
MTGVEDRKERTVASMNFSDFIRNRHSPRAFLPDEIPAEDIKEILLDAQSAPSNSNTQPWNVHVIGGQKLRDLSAALIEEFDTNGLNPDFTVDYGEGVHPQRSKELAAKMYGLLGIAREDKEARTEFVRENLRFFGAPYSALMFIPPIGDRIRAAFDQGTYAENFLLSLTAHGYHGVPQGMISLLAPTVREFLGVDEEYKLVTALTFGRADESSPVYKTAPGRVALSETVTVHGIEGLGL
>LS483459.1|SQI23917.1|1890450_1891179_-|glutamate-ABC-transport-system,-ATP-binding-protein
MIELKGVNKHFGEYHALRDINLEVSAGQVVVILGPSGSGKSTLCRTINRLETIDDGEIRIDGELLPEEGKDLAKLRAEVGMVFQQFNLFSHMTIRDNVTLAPTKVRKVSKEEARKTAEKLLDRVGIAAQADKYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEMINEVLDVMTDLAKGGMTMVVVTHEMSFARRVADRILFMADGAIVEDADPETFFTNPQSDRAKDFLAKIVNH
>LS483459.1|SQI23916.1|1889534_1890431_-|glutamate-ABC-transport-system,-solute-binding-protein
MSTFKSALKRLTAAVVATASVVALTACGSGGARDLLADIESGHVVMGTKYDQPNLGERTPDKQFAGLDTDVSRYVVEYIAKKHGWATPEIEWRETPSAQRETLINNGEVNMITATYSINKGRLKAVDFAGPYVVTHQALLVREDSGINGLNDIAPGTRLCSVSGSTPAQKVKDALPEVQLQEFDTYAACAEGLKQGVVDATTTDATILAGFAQRYKERFDEDYSVIQLKNDDGSFWTNENYGIGLPKGDDKAKAEVNEALNEMHDSGEFQKIVAKNLGDNVDIGEKPKIGDLSFVDEK
>LS483459.1|SQI23984.1|1904228_1904519_-|Uncharacterised-protein
MRADPSMDVFEEFLSRYGEQFVTAGIDHAFTPALGGEFEYALESAVYYSVEGGVFIAPDMLDKILDLFSPGSNPGECLRSFLKEHRPDYVRVSEDQ
>LS483459.1|SQI23985.1|1904606_1904861_-|Uncharacterised-protein
MPEGVLCSPSDWNASCLALFQMMSNDAVTPTNVALKAAGKVRRAMVHIHEGGHFDPYVEPLFSEIIEEQLAFLRKEVSVGGALA
>LS483459.1|SQI23987.1|1905471_1905672_+|Uncharacterised-protein
MTTTNPSKRRAFLTGVGSILDLQGAATYRRMQSLMPPPAPKTSLNAALVRASALSSSETTPFSSPQ
>LS483459.1|SQI23988.1|1905953_1906604_+|Uncharacterized-protein-conserved-in-bacteria
MPSPDNTPQKESLQDPINGRLALIFIGAIVLVGILVAAIWHVANSKEHSHSINTQPAAASAHQRPDSTSTTAPATEPANAPVKASNAPQSELNQYPTSESEATGSTAMESTESTAIAQPTDAPRTQRQANDAAMTALKFNLSEKGLRENLQLQGYSDDQITTAIEKLDPDWNQQALNCARKLNETGSPLPEEELLEMLKTNSGFTDDQAQYAIDHL
>LS483459.1|SQI23989.1|1906635_1906914_-|Copper-sensitive-operon-repressor
MHGYLSDKERYLARLKRIEGQVRGLQRMVDEEQYCIDILTQVTALQSALKGVALGLLDDHMNHCVRHAAEAGGEEAEEKLAEVSQAVKRLVR
>LS483459.1|SQI23991.1|1906913_1909058_-|cation-transporting-P-type-ATPase
MAVIDLDITGMTCASCANRIEKKLNKQEGVTATVNYATEKAHIETEEGAASDADSYIAIVEKLGYGGSVPKPEKPAGDDPAAKELRGLKRRLVVAVVLATPVILLAMIPPLQFDYWQWASFALATPVILWAGWPFHKATWVNLKHGAATMDTLITVGTSAAYLWSLYALFFGHAGEPGMRHGWSILNHAGDPMGDIYFEVAAGVVTFVLAGRYFEKRSKQRAGDAIRALTDMGAKQVTVLREGTDGAGAGVQEQLIPIEQLQIGDRFLARPGEKIATDGRILDGTSAIDQSMLTGESVPVDVGPGDEVAGATINTSGRLVVEATHVGEQTKLAQMAKLIDEAQSGKADVQRLADKVSGIFVPVVIAIALITLLFAGFSNAVAVLIIACPCALGLATPTALLVGTGRGAEQGILIRGPEVLEGAHAITTVVMDKTGTVTTGTMRVVDVQPTGGTREEVLRAAAAVEAYSEHPIGRAIAEAGREEIGGLPEVSGFRNLPGHGVEGTVEGQVIRIGRGDEGASTNKATTVNVSADGRAIGTISVADTVRPTSAEAVRKMHEMGLKTVLLTGDNQQVADAVAREVGIDEVIAGVMPEDKVAHIRSLENVAMVGDGVNDAAALASADLGIAMGSGTDAAIEAADITVMRDDLLAVADALRLARKTLRTIKMNLFWAFAYNVAAIPLAAFGLLNPMLAGAAMALSSVFVVSNSLRLKGFK
>LS483459.1|SQI23995.1|1909083_1909725_-|Zn-dependent-hydrolase
MSEQKFENPQIEQFETSGKFRLDGGEWDVDNNVYLLVNGDKCIVVDPAHDAQAVIDHVGGRTVEAILLTHAHNDHCELAPELAEKWGVKVYLHEDDRMLWEESNGDAPFTPIDVEDPLWAEWSVRLYHTPGHSPGCIVVEVPGQHALLSGDTLFNGGPGATGRKYSSFPRIIESLQSKVFILPHDLKVYPGHGDTTTVGAEAARIEEYIERGY
>LS483459.1|SQI23998.1|1909767_1910868_-|Zn-dependent-alcohol-dehydrogenase
MTTTVKAVISRAKNDPVELTDIVIPDPGENDVIVRIQACGVCHTDLAYRDGGITDDYPFLLGHEAAGVVEQVGDRVTHVEVGDYVVLNWRAVCGQCRACKKGEPKYCFDTHNASKKMTLADGTELEAALGIGAFAEKTLVHEGQCTKVNSEADPAVAGLLGCGVMAGLGAAVNTGEVKRGESIAVIGVGGVGMAAIAGAAVAGATKIIAIDISDAKLARAKEEFGATHTINSSGLSDDELVEKVQEINGGFGVDVAVDAVGLPQTYKQAFYVRDLAGRVVLVGVPTPDMTLELPFLDVFSHGGALKSSWYGDCLPERDFPMYVDLYQEGRFPLDRFVDDRISIDGVEDAFEKMKQGKVLRSVVEFK
>LS483459.1|SQI24000.1|1911057_1911372_+|Uncharacterised-protein
MIQLVVGAAAGYLMGTKAGRRRYEQIRRGYQSAVNSDITKAVVRSGRKALANRLDPEPRMHEVRDLNRSTRDSLGEGHTIVEADDAHPNDRIESPKRAPKNPFK
>LS483459.1|SQI24003.1|1911473_1912382_-|transposase-IS3520
MISYIDTYKDQFGVEAICRVLKQADRGFITSRGYRKATTRVPSARALSDSLLIPEIQRVHAQNFSVYGIRKMWHAMNREGLHIGRDKTARLMKLAGVCGRRRGRTPVTTTSPKAPDYRPDLVQRNFRAQAPGRLWVADITYVRTLSGFAYTAFVVDVYSRKIVGVATRSTMRTDALPMEALEHALTTAGRIHGNQLIHHSDRGSQYVSLKYSTALAESGIRPSVGTVGDSYDNALAETVNGLYKAELIHAQGPWTSVGEVELATLRWVHWWNTKRLHEALDYATPQEVETEYYLTQPINTGA

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Crispr_ID: LS483459_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483459_5

2354931-2355048

Orphan

Consensus_repeat	Method
ACGCATTCCCGTTCTAACGACATTTCAGCCCCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483459_5

>merge|LS483459|5|2354931-2355048|CRISPRCasFinder
ACGCATTCCCGTTCTAACGACATTTCAGCCCCAGCAGGCACCAAAACCCCGCCCGGCGAGCCTGCGCCTTCGCCCGGCGAGGCACGCATTCTCGTTCTAACGACATTTCAGCCCCAGC

>LS483459|5|5|2354931-2355048|CRISPRCasFinder
ACGCATTCCCGTTCTAACGACATTTCAGCCCCAGC	AGGCACCAAAACCCCGCCCGGCGAGCCTGCGCCTTCGCCCGGCGAGGC
ACGCATTCTCGTTCTAACGACATTTCAGCCCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
LS483459.1\|SQI24647.1\|2358132_2359146_-\|predicted-permease	unknown	unknown	gnl\|CDD\|376667
LS483459.1\|SQI24641.1\|2348291_2349410_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213235
LS483459.1\|SQI24654.1\|2365395_2366817_+\|ferredoxin/ferredoxin-NADP-reductase	unknown	unknown	gnl\|CDD\|215457
LS483459.1\|SQI24649.1\|2359955_2361215_-\|sulfate-adenylyltransferase-subunit-1-/-adenylylsulfate-kinase	unknown	unknown	gnl\|CDD\|225448
LS483459.1\|SQI24636.1\|2343305_2344394_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
LS483459.1\|SQI24635.1\|2342731_2343313_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|237227
LS483459.1\|SQI24638.1\|2345209_2346721_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
LS483459.1\|SQI24639.1\|2346842_2347385_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
LS483459.1\|SQI24644.1\|2351973_2354649_+\|serine/threonine-protein-kinase-PknG	unknown	unknown	gnl\|CDD\|319004
LS483459.1\|SQI24643.1\|2350898_2351984_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270408
LS483459.1\|SQI24650.1\|2361214_2362129_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
LS483459.1\|SQI24652.1\|2363172_2363382_-\|ferredoxin-like-protein,-involved-in-electron-transfer	unknown	unknown	unknown
LS483459.1\|SQI24646.1\|2356491_2358036_-\|phosphotransacetylase	unknown	unknown	gnl\|CDD\|235537
LS483459.1\|SQI24642.1\|2349486_2350899_+\|hypothetical-membrane-protein	unknown	unknown	unknown
LS483459.1\|SQI24645.1\|2355137_2356349_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
LS483459.1\|SQI24637.1\|2344405_2345206_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
LS483459.1\|SQI24640.1\|2347479_2348292_-\|ABC-transport-system,-permease	unknown	unknown	gnl\|CDD\|372253
LS483459.1\|SQI24648.1\|2359216_2359954_-\|sirohydrochlorin-ferrochelatase	unknown	unknown	gnl\|CDD\|239509
LS483459.1\|SQI24653.1\|2363385_2365080_-\|sulfite-reductase	unknown	unknown	gnl\|CDD\|223233
LS483459.1\|SQI24651.1\|2362125_2362926_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
LS483459.1\|SQI24647.1\|2358132_2359146_-\|predicted-permease	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.09097e-31
LS483459.1\|SQI24641.1\|2348291_2349410_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	9.07925e-101
LS483459.1\|SQI24654.1\|2365395_2366817_+\|ferredoxin/ferredoxin-NADP-reductase	gnl\|CDD\|215457	PLN02852, PLN02852, ferredoxin-NADP+ reductase.	5.2848e-123
LS483459.1\|SQI24649.1\|2359955_2361215_-\|sulfate-adenylyltransferase-subunit-1-/-adenylylsulfate-kinase	gnl\|CDD\|225448	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism].	5.16692e-174
LS483459.1\|SQI24636.1\|2343305_2344394_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.99748e-15
LS483459.1\|SQI24635.1\|2342731_2343313_+\|peptide-deformylase	gnl\|CDD\|237227	PRK12846, PRK12846, peptide deformylase; Reviewed.	1.30407e-72
LS483459.1\|SQI24638.1\|2345209_2346721_+\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	5.06194e-124
LS483459.1\|SQI24639.1\|2346842_2347385_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	7.53364e-15
LS483459.1\|SQI24644.1\|2351973_2354649_+\|serine/threonine-protein-kinase-PknG	gnl\|CDD\|319004	pfam16918, PknG_TPR, Protein kinase G tetratricopeptide repeat. This domain is found at the C-terminus of protein kinase G and contains a tetratricopeptide repeat (TPR).	4.40755e-77
LS483459.1\|SQI24643.1\|2350898_2351984_+\|extracellular-solute-binding-protein	gnl\|CDD\|270408	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold. This group includes periplasmic glutamate-binding domain GluB from Corynebacterium efficiens and its related proteins. The GluB domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.72231e-67
LS483459.1\|SQI24650.1\|2361214_2362129_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483459.1\|SQI24646.1\|2356491_2358036_-\|phosphotransacetylase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
LS483459.1\|SQI24645.1\|2355137_2356349_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
LS483459.1\|SQI24637.1\|2344405_2345206_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	2.81328e-103
LS483459.1\|SQI24640.1\|2347479_2348292_-\|ABC-transport-system,-permease	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	4.39851e-07
LS483459.1\|SQI24648.1\|2359216_2359954_-\|sirohydrochlorin-ferrochelatase	gnl\|CDD\|239509	cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.	4.44872e-22
LS483459.1\|SQI24653.1\|2363385_2365080_-\|sulfite-reductase	gnl\|CDD\|223233	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism].	5.08281e-177
LS483459.1\|SQI24651.1\|2362125_2362926_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.29859e-93

>LS483459.1|SQI24644.1|2351973_2354649_+|serine/threonine-protein-kinase-PknG
MQSNDRELNASRDSSADSEPEERTEAVEFDPFADSEPEERTEAVEFDPFADSEPEEHTEAVEFDPFADDEDTDATVQHTEPVGNPANAVDSGERSRIEALSTFRKRRGTYRSGASVADGMVQLPFISPTDPEDAVIDPSSAIEKGVEAPTLKAGDIIAGQYEILGPIAHGGLGWVYIAIDHNVADRYVVLKGMMATENEQERAVAESERAFLADITHPGIVKIFNFIDDPRSPGGFIVMEYVGGPSLRGQRRKLAAGVLDLDVAIGYILEILPALDYLHSRGVVYNDLKPDNILITEDQVKLIDLGAVTGIGAFGHIFGTKGFQAPEIAKTGPTVASDIYTVGRTLAALIVKLPVEDGVYAPRLPTPDEEPLFREYLSLYRLLLRATDEDPEARFSSATTMANQLIGVLREILAIRDGRHYPHLYTRFTAQRSTFGTKHIVFRTDQLVDGVVRSVEISVPEVVSALPTPLADSQDPGYGLLSATSFTEAGDLLDTLRAAYAQPELKHSVEVPLTMVRALLDVGQTREAHDLLDELKPRLEKDWRFQWHSGVAALLTGQFAEAQKFFNRVLYILPGEPAPKLALAATDELLLQQQGVNSTKLLSEHVSRAASALAYAQKLPVKDYTGVPSWEHITLDPVSLRFHAMRLYGLVWATNQSTVSSAFGLARQLRAEGMVDSAVAALDRLPQASRHNRLARLTSILLLISDANSLTESRIRRAARRLETLPTNEPRLPQVRIAVLSAGLNWLRGASDGLDGAAGIAGGGAGDTGAGGTGAGGAGAGAGRGRGSAGGAGAGGGAEAGSSRGSRKSKGKRKLGAVTRANRGSPTRANEASQVKRQAAAAPLFDVQFTERGLRTGLEKSLRQLARQAPFARHRYDLVDMANQIRPRTWF
>LS483459.1|SQI24643.1|2350898_2351984_+|extracellular-solute-binding-protein
MRKQAFKPVVAALTVAAIALTSACATESPDLPEWPSVQHSSSDDLPYGAAYMQPDEVPNDVDAASDSSADIDNTGDEEPFGSIKPDTREPKERVPQIMRRGRLVVGVAQSLNRLGFRDPVSGDVAGFEVDLAREIARDIFGDPNRIEFRYVESRERAEALKSGDVDIVVRTMSPTLSRQAKLEFSIPYLRAHSRLLVLSDSQIQSFDDLHNKTVCVTRDSTSAVQIKQYDVGRLLLAQAWTDCLMAMQRFQADAIYTDDAILTGLRAQDPYTTLVADAPETSYYSVAISPPGFPKKTTGLVMQVNSTMERIRRDGTWKNLYDKWLADYLGPASSLPLKYRTEEETKELNKIRRRVANGDAE
>LS483459.1|SQI24642.1|2349486_2350899_+|hypothetical-membrane-protein
MAMPPVTAFEADRWMDSDEHPTGRGSSFKGFVNPALEAPRRFLKFASTSPGLLTIVSTILVLAILAAGGAMVYSSQNRQAQLNALVNQTEPLSDAAQELFNSLSVADSVATTSFLRKSTTDAATRDYDAAMSSASTSLIRATSGIDNIESREMELVLQIQNSMPDYLKLMSNAQTHDRMRNPVGASYLAQASTLMQETMLPAAQELYSRTSEEVSTQQAKLSAPLWFPLSGIVAAIIMLVIAQFWLASLTNRRLNLGYVAATGLMLFALVWASISAALTWHAGNQDVQGTVRPLEQLTAVRISVQQSRTQEALGLIQRDYGEDRQQEFSDAMADIDSKLEGLRSQVSQPERIDTAREALRSWDESHAKMVSELQNGRYTEALAAALDTKVKEEKQDGKKDLRAADEDTSDYTVVDNEMQELISSTREELRDILVEGRTAASRVTNLVLTLTVLSALCVFFGTRPRLQEFL
>LS483459.1|SQI24641.1|2348291_2349410_-|ABC-transporter-ATP-binding-protein
MITVSSLTKAYKGNTVVNDLNFEVSPGIVTGFLGPNGAGKSTTMRMIVGLDEPTKGTARIDGKAYAEYKRPLEKVGTLLDAKWVHPNRSAAAHLRWVAAANGFSKKRVDEVLGIVGLSDVAGRKAGKFSLGMGQRLGLACALLGDPEVLILDEPVNGLDPEGIRWVRDFVRALAREGRTVLISSHLLSEMAQTADHLIVIGKGRLVANQSTHEFIKSTSEVSTVVRTDHIAEMKAALTEESVPFQEGKDLDGRPTLTIPQQESDWIGALAYSYGLRLRELSEKRPSLEDAYLRMTQEHVEYHASVEADKAEVSKVDKPSKPEAAEKAAPKVMPEEAESAGGRHKEKSAPEKCAKESSEATGNAVRVQKEGDK
>LS483459.1|SQI24640.1|2347479_2348292_-|ABC-transport-system,-permease
MVNLIKSELIKLRSTKALWWTSGLILFFSLGFALLNGGMTGSLLTSDEAKNDPELYMSVVGGIGSDMGLSGFLSFGMMIVMIQAVMLVTTEYGANTSKTTLLATPTRWQVPIAKFLVYGVIASVLAFISNVVGTILAKWSLGWKLEDEELLGKVGLGADGLWEQIGRIELYLLLTIAAAIGVGYLVRNTAGGIAIMLLWNLVIEGTLVQLVPKVRDWLPPYMPFTNAEAYVGMRDLDEAPWGQTGSILYFAAWCVVLFVVGVVMLKKRDA
>LS483459.1|SQI24639.1|2346842_2347385_+|MarR-family-transcriptional-regulator
MTPSPQKSPQTPSYPPVRGRKAPEILPEIDVAEIATAVYDFLSATRRLMERPNQSLEISQSEIEVLQFISQHPGCGVSDVARLRFLRASNVSATVRRLINAGLIRRQANPEDKRAQNLYLTDEGVDMMNSITDEWALIITKATDRMDARDIAKLRRGVPALRNLSLAAESLVDDLQRNPD
>LS483459.1|SQI24638.1|2345209_2346721_+|cardiolipin-synthase
MPFPDLLGLFSEFTDDLQWWQITLVVLDYALKIFALGWVPKERRPTSAMAWLLAIFLIPFIGIFLFLLMGSPAINRRRHRIQNQANELIRTMSADEPDVPEGSELSDELRSLVRLNRELTALPAVDGTMQALHSDYKESIAAMTRAIDAAEDYVNVEIYIMAWDDTTEPFFEALGRAAQRGVTVRVLWDHIGAHKYKGNKKLGKRLQAMGVDWQVMLPLQPFKWRFRRPDLRNHRKLVVVDGRVAFMGSQNMIEAPYQKPKNHKIGREWVDVMAELTGPIVSTINSVFAVDWYTETNEELDLINPTDAKQWLDTHDQDTGADIMQIVPSGPGFTTEPNLRLFTSMAHHAKHTLKLISPYFIPDESLMEAVTTACYRGVRVELYVSEKSDQPMVGHAQASYYSELLKAGVHMYLYPYPKVLHSKFAIADSEVAVMGSSNMDMRSFGLNYEISLMVGKGDLLEALRALTEEYRGRSALLTAEQWSTRPLYKQYVDNVARLTSALQ
>LS483459.1|SQI24637.1|2344405_2345206_+|exodeoxyribonuclease-III
MRIATWNINSVRTREERVREFLQRSDVDVLCLQETKCTDKQFPDFTDTGYEQAHFGLHSFNGVAILSRVGLADVQTDFGQPGFNKDLDAEQALEARAIGATCGGVEVWSLYVPNGREIADPHYSYKLRWLDALAAYAAGSGVGASQRKSSEKLCLVGDYNIAPRDEDVWDRSFFDGRTHVTPNERARLRALEDAGLSAATDLIADEYTYWDYQAMRFQKGEGMRIDLQYVRGITPTAARVDREERKGKGASDHAPVIVDYNVDGEA
>LS483459.1|SQI24636.1|2343305_2344394_+|acetyltransferase
MNKDTTFSAAHAGARRVEGFGFPISRRTDPVSIRPGTRVVVRYRVPGDAASGHGAGSAVTDAIGVLRSISPLQVDDLVIADKDVVVLKTLSAKPVRNSDIRALEAAKAAAFPGIENQMIGGWLARAGDGITERSNSAVPIGPSAGLQEVPLAQLKEFYRSHNLPCQLMIPDRIGRPAEHLPGERGPEILVMSKELGDSAQLSGQDSPQASAPTLDSPLTDALDPSLADTQIELAVDETPDADWFSMYKFRGQPLPKKALDLLCHRIDGQLGFARLTVDGQLAAITRATITDGWLGYSAVAVAPEFRRRGLGTLLCQHLLSWGADNGAERAYLDVIDSNTAGKALYHKLGFSEHHRSRSLRTR
>LS483459.1|SQI24635.1|2342731_2343313_+|peptide-deformylase
MTIMPIVICGDPVLHNPTTKVDPSEIADLAPLIADMYETLSAANGVGLAANQVGVNKRFFVYDCPDTERGEMRRGCVINPALETSEIPETMPDEEEDEEGCLSVPGYSFPTGRADWARVTGLDENGEEITVEGTGFFARCLQHEVGHLDGFLYTDTLIGRWKRKSKKAIKSEGWDHAGNTWTPGVDEDPFGHE
>LS483459.1|SQI24645.1|2355137_2356349_-|acetate-kinase
MTKYVLVLNSGSSSIKFQVLDPEASATAEPFVSGIVEKIGEKKGHIQIQTETSKMEDNRPILSHSVGLERAFGMMTLLGVGPQDLDLVAAGHRVVHGGATFTEPVLIDDEVIEQLKELIPLAPLHNPANIDGIENARALLEHVPHVAVFDTAFFSTLPEHAANYAVKKDIADEYNIRRYGFHGTSHEYVSSKVPDLLGKPAEEVNQITLHLGNGASAAAIRGGVAVDTTMGLTPLAGLVMGTRSGDIDPGIIFHLARSGGMTVDQADKLLNRESGLKGMAGVNDFRELKTLIEDGDENAQLAYDVYIHVLRRFIGSYMLILGGVDAIVFTAGVGENAVQVRRDAMADLQNFGIEIDDARNENSEGNVGAREISTDDSTVKVFVVPTNEELAIARQATELAEQQ
>LS483459.1|SQI24646.1|2356491_2358036_-|phosphotransacetylase
MSIASSIAPQGTGTNAVISPIASAAARRSDILDALGEAEAVDIFDTIRPSAPDFAAALDAAYDAKVGAGAAAGAGAVLLGTGEITFDSRLAAAAGASHYLLAGSPADATALQLASGQLVRSGRKPAGISFIDATASAAAAAANAVEAEGQAIRHIALEGIAQAAAGGAGAGAGGAGSAAGASAAKEPVIGPELFERNLLIKAREKNAHIVLPEGEDDRILTAADQLLRAKVCRLTILGNPDDIARRAKELGLDLSGATLTDPSEGNQLEEFAAEFAELRKHKGITLEQARETMQDISYYATMMVHKGIADGMVSGAAHTTAHTIKPSFQIIKTAPGASVVSSIFLMVMDGVLWAFGDCAVNPNPTPDQLAEIAAVSAQTASQFGIEPKVAMLSYSTGTSGAGADVEAVAAAVKKAQENNPDLPLDGPLQFDAAVVESVGQKKLPGSDVAGQATVFVFPDLNCGNITYKAVQRTADALAVGPILQGLNKPVNDLSRGATVPDIVNTVAITAIQAN
>LS483459.1|SQI24647.1|2358132_2359146_-|predicted-permease
MKILIFALVGVVAQLVDGALGMAFGITATTLLIFSGLGPAHASAAIHLAEVGTTLFSGLSHWRLKNVHWPTVLALGVPGAIGAFTGAYVLSNLSTEAAEPVVSTLLVLLGAYVLVRSVAVPWKKNENTQPVSTTRRSRFGLAGLGLAGGFLDASGGGGWGPVTTSTLMSVGKAEPRRIIGTVNTAEFLVAVSASAGFVAGMGSELAENWQPVVGLLVGGAIAAPIAAWIVTIMKPEVLGGVVGGLLMLLNSSRLVNYFGFLGVVAVILIGLAVIVALVVVRKRSLLERSLTGDDAPENPRQATAASDAETTEGRASGRHYEEERTKVQQREKERARG
>LS483459.1|SQI24648.1|2359216_2359954_-|sirohydrochlorin-ferrochelatase
MTRPAPIICLAHGSRHPQADQAVFEIAERISESTGLPAFAAFLDFHPATLTTVAHRVVAAGYSEAVVVPLLFTQAFHARFDVPAAIAEAVDSIDATSSARLTLHLTDGLGTGADMEELVADFTAQYLAGSSADSTDKLALYSVGSSQPGANEAVAEFAGRVGARLNMRSTRAFVATGNNPGRDTEALLEFADERTVTVPLFVSPGLLWDKAKIRMPNGQKYTRHLGDAVAPVVINRACRALQQAH
>LS483459.1|SQI24649.1|2359955_2361215_-|sulfate-adenylyltransferase-subunit-1-/-adenylylsulfate-kinase
MSTNLPTLRLCTAGSVDDGKSTFVGRLLHDTKSILADQYESVERVSNAKGLENPDLSLLVDGLRAEREQGITIDVAYRYFATDKRSFILADTPGHVQYTRNTVTGLSTSELVIVLVDARNGVIEQTRRHLTVAAMMKISHVIVAVNKIDAVDFSEQVFNDVKSDVDALVSELGLAHVDVIPTSALLGDNVVERSQNTPWYTGPSVLEILETTEPAKNIADVERGLRFPIQIVIRDHATDYRGYAGRITAGKVSVGDKVLADGREAIIEGIDGPAGEQQTATRGESVSLRLDRDIDLSRGDIIAASDLPEPQQSFTATVFHLSETPVRLRSNVLVRYGTALVRGRVDEVIRRVDISGRNRSEEEIAHGSADELALNDIAEVRVTVAEPLPVETYRRGGRVGSLLLINPGSGDTLTAGLVN
>LS483459.1|SQI24650.1|2361214_2362129_-|sulfate-adenylyltransferase-subunit-2
MSNENTTALSPHLASLEAEAIEILREVAGQFDRPALLFSGGKDSVVVLELAKRAFHPAPVPFELVHVDTGHNFPEVIEFRDKIAADPKVTLHVAAVQDWIDSGAIQERPDGTRNPLQTVPLVETIQNRGYDAVLGGARRDEEKARAKERVFSVRDSFGGWNPRRQRPELWGLYNGRHQVGENIRVFPISNWTEADVWDYIRDRNVEVPAIYYSHQREVFNRNGMWLTPGEWGGPKEGEELVEKTVRYRTVGDMSCTGAVLSTATTIEDVIDEIRQSTTTERGATRADDKLSESSMEDRKKEGYF
>LS483459.1|SQI24651.1|2362125_2362926_-|phosphoadenosine-phosphosulfate-reductase
MSLVDATGLLGGNSDDFRDPAESPQGAPTKTTPLSDEERAANEQLVAEWNDKLEGASAEEIMEWVAEHVPGKVAVTMSMQDTVLAELAEGRLAEDRAELVFLDTGYHFAETLETRDKVQQRYNLPLENITPVLNREEQDKVYGPRLYSRDNTACCRMRKVEPLARMLNPFNAWITGVRRVDNALRANTPVLDVDRTGRLKINPIVAWSDEDVEAYINDHDLIINPLTKQGYPSIGCETCTLPVAPGQDPRSGRWAGSNKTECGLHT
>LS483459.1|SQI24652.1|2363172_2363382_-|ferredoxin-like-protein,-involved-in-electron-transfer
MSVPDKDSLPSVNEQVGGRVGHPNARRATVNNCPYCMSQNLFPDAETDNAWQCRECMRVFSVKFHGQLL
>LS483459.1|SQI24653.1|2363385_2365080_-|sulfite-reductase
MSTGTSTEEKPARPRRKKQRKPQGQWAVDGREPLNDDERVKQEDPGISVMQRIRDIYSKEGFDSIPAEDLAPRFKWVGMYTQRKQGLDGEKTSTLTNTELQDNYFMMRIRLDGGVVSSEGLRTIGEISEKYARNTADFTDRQNVQLHWIRIEDVPTIWDELAKVGLDSFFGCGDVPRVILGSPVAGIAKDEIIDGRPAIEKIKKELLPDPEFGNLPRKFKSAISGHVRQDVTHEIQDLAFIGSEHPEHGPGFDVWVGGGLSTNPMLAQRLGVWVPIDEVPEVWAGVVRIFRDYGYRRMRNRARLKFLVADWGVEKFREVLENEYLKRPLLDGPEPEEYPGYRDHVGLHEQKDGRFYLGVKPTVGHTDGKQLQQLADLAEKHGTTNIRTTPDKELLFLDLEREAAEALAADLEELGLSAKPSAFRRDIISCTGLEFCKLAHVVTKQRAIALVDELEDRLGDLDVPLKISLNGCPNSCARTQVADIGLSGKILTTDEGERVEGFQVHLGGTIGLEPHFGKKVRGNQVFSRDLGDYVVRVVENFKSHRTEGEEFRDWVVRADDELLV
>LS483459.1|SQI24654.1|2365395_2366817_+|ferredoxin/ferredoxin-NADP-reductase
MPENRPLRIAVIGSGPAGIYASDALTKSEADVSVDIYERMPAPFGLIRYGVAPDHPRIKGIIKSLHKVMDKPEIRLFGNINVGEDITVDELKQFYDAVIYATGATDDRPLNIPGGEHTIGAGEFVGFYDANPYFEDKWDLSADSVAVVGVGNVGLDVARVLAKTGEELKVTEIPDNVYDSLKENQAKEIHVFGRRGPAQAKFTPLELKELNDSDTIEIVIDPEDIQYDEGSEQARRASKIQDMVCTRLEQYAIADPKGAPHKLYIHFFESPVEVKTDAEGRVTAFVTERTELNGDGSVSGTGKLTEWPVGAVYRAVGYKSDEQPGLPWDERQNVLPNVGGRVLTEGPTADGIAGVPGSADPEAEKRERLTGVYTTGWVRRGPVGLIGNTKGDANEAVANLLEDAANGIGFNPEKPELEAVEAFLEEKGIAHTTWEGWYSLDKHERELGEAEGRERKKVREWDEMLRHSQGKNV

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Crispr_ID: LS483459_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483459_6

2400337-2400432

Orphan

Consensus_repeat	Method
ATTCCCGTTCTAACGACATTCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483459_6

>merge|LS483459|6|2400337-2400432|CRISPRCasFinder
ATTCCCGTTCTAACGACATTCTGCCCACCAGAGCCCCAATTCCTACCCCCAACGCCCTGCGCATTCCCATGCATTCCCGTTCTAACGACATTCGCG

>LS483459|6|6|2400337-2400432|CRISPRCasFinder
ATTCCCGTTCTAACGACATTCTGC	CCACCAGAGCCCCAATTCCTACCCCCAACGCCCTGCGCATTCCCATGC
ATTCCCGTTCTAACGACATTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
LS483459.1\|SQI24685.1\|2388390_2389680_-\|adenylosuccinate-synthetase	unknown	unknown	gnl\|CDD\|234904
LS483459.1\|SQI24720.1\|2410669_2411557_-\|thiosulfate-sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
LS483459.1\|SQI24716.1\|2409616_2410075_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI24699.1\|2398800_2400156_-\|putative-glycoside-hydrolase	unknown	unknown	gnl\|CDD\|227170
LS483459.1\|SQI24708.1\|2403596_2403980_-\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|234918
LS483459.1\|SQI24697.1\|2397583_2398618_-\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236406
LS483459.1\|SQI24688.1\|2390775_2394705_-\|cell-surface-protein	unknown	unknown	unknown
LS483459.1\|SQI24706.1\|2401800_2403585_-\|putative-secreted-protein	unknown	unknown	gnl\|CDD\|367841
LS483459.1\|SQI24714.1\|2408646_2409561_+\|dehydrogenase-related-to-short-chain-alcohol-dehydrogenases	unknown	unknown	gnl\|CDD\|187632
LS483459.1\|SQI24683.1\|2386635_2388360_+\|Choline/Carnitine-o-acyltransferase	unknown	unknown	gnl\|CDD\|376382
LS483459.1\|SQI24695.1\|2397029_2397569_-\|Protein-of-uncharacterised-function-(DUF3151)	unknown	unknown	gnl\|CDD\|378646
LS483459.1\|SQI24712.1\|2405299_2408266_-\|glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
LS483459.1\|SQI24692.1\|2396067_2396967_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|377028
LS483459.1\|SQI24717.1\|2410091_2410709_-\|PTS-system-IIABC-component	unknown	unknown	gnl\|CDD\|376324
LS483459.1\|SQI24686.1\|2389860_2390763_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483459.1\|SQI24690.1\|2394818_2396018_-\|hypothetical-membrane-protein	unknown	unknown	gnl\|CDD\|226614
LS483459.1\|SQI24701.1\|2400546_2401230_-\|rRNA-methylase	unknown	unknown	gnl\|CDD\|349969
LS483459.1\|SQI24704.1\|2401239_2401782_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
LS483459.1\|SQI24680.1\|2384857_2386480_-\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|341230
LS483459.1\|SQI24710.1\|2404081_2405251_-\|glycine-cleavage-system-aminomethyltransferase-T	unknown	unknown	gnl\|CDD\|234742

Protein	Function_ID	Function_description	E-value
LS483459.1\|SQI24685.1\|2388390_2389680_-\|adenylosuccinate-synthetase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
LS483459.1\|SQI24720.1\|2410669_2411557_-\|thiosulfate-sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	2.5879e-61
LS483459.1\|SQI24699.1\|2398800_2400156_-\|putative-glycoside-hydrolase	gnl\|CDD\|227170	COG4833, COG4833, Predicted glycosyl hydrolase [Carbohydrate transport and metabolism].	4.61247e-122
LS483459.1\|SQI24708.1\|2403596_2403980_-\|glycine-cleavage-system-protein-H	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	3.80437e-59
LS483459.1\|SQI24697.1\|2397583_2398618_-\|fructose-bisphosphate-aldolase	gnl\|CDD\|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
LS483459.1\|SQI24717.1\|2410091_2410709_-\|PTS-system-IIABC-component	gnl\|CDD\|376324	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1.	4.6863e-24
LS483459.1\|SQI24706.1\|2401800_2403585_-\|putative-secreted-protein	gnl\|CDD\|367841	pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.	0.000117436
LS483459.1\|SQI24714.1\|2408646_2409561_+\|dehydrogenase-related-to-short-chain-alcohol-dehydrogenases	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.06047e-78
LS483459.1\|SQI24683.1\|2386635_2388360_+\|Choline/Carnitine-o-acyltransferase	gnl\|CDD\|376382	pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase.	2.95263e-91
LS483459.1\|SQI24695.1\|2397029_2397569_-\|Protein-of-uncharacterised-function-(DUF3151)	gnl\|CDD\|378646	pfam11349, DUF3151, Protein of unknown function (DUF3151). This family of proteins with unknown function appears to be restricted to Actinobacteria.	6.36993e-55
LS483459.1\|SQI24712.1\|2405299_2408266_-\|glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
LS483459.1\|SQI24692.1\|2396067_2396967_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	1.07033e-12
LS483459.1\|SQI24690.1\|2394818_2396018_-\|hypothetical-membrane-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	8.57537e-27
LS483459.1\|SQI24701.1\|2400546_2401230_-\|rRNA-methylase	gnl\|CDD\|349969	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.78347e-56
LS483459.1\|SQI24704.1\|2401239_2401782_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	5.75007e-68
LS483459.1\|SQI24680.1\|2384857_2386480_-\|acyl-CoA-synthetase	gnl\|CDD\|341230	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids.	0
LS483459.1\|SQI24710.1\|2404081_2405251_-\|glycine-cleavage-system-aminomethyltransferase-T	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0

>LS483459.1|SQI24699.1|2398800_2400156_-|putative-glycoside-hydrolase
MFNLPGKKKRGRKSSQVGDISAAAQGAVAGQAAEAAGQAAGAAEQAEAAEASPAESPNPNQELIERWDHRADLSYQAVHERHASRLWGIPRTTLGVIAWPPTTRDRMFVRWHYWWQAHYIDNLIDAAIRRPTHSRIFAIRRHLRAMRIRNLRPLTANHYYDDKAWLALALQRVANTPKIQAKLGTPRELEPLVENIFEGVDSLTGVLPWRTQETFYNVPTNGPAAILAARNGDIETAERLIDWTFDNLINEDGLVMDGIHMRMAGPEPVTAVHPYCQGVMLGACVELALARRRAAGVEDRTVSDVGVKEITRIHGLLRAIEVHLTDRDGAINARTAGGDGGLFNGILARYLSLVVECVPTPGRHGTEAVAIARRIVLATAEQVWRFRLEVDGLPVFSADWSKDATMPQAGGLVGATIAGAVASSDIAERDLSVQLSGWMLMEAAARTIAAE
>LS483459.1|SQI24697.1|2397583_2398618_-|fructose-bisphosphate-aldolase
MPIATPDVYRDMLDNAKENGFAYPAINCTSSETINAALKGFADAESDGIIQFSTGGAQFGSGLAVKNMVAGAEALAAFAHQAAKHYGVNVALHTDHCQKEVLDEYVRPLMEISRKRVEAGENPLFQSHMWDGSAIPIDENLEIAKDLLADAQKANIILEVEIGVVGGEEDGVEAKAGANLYTTEEDFAKTVDALGTGEHGRYLLAATFGNVHGVYKPGNVKLRPEVLDMGQKVAEKKLGLSEGSNPFDFVFHGGSGSEKEKIEEALRYGVIKMNVDTDTQYAFTNPVARHMFTNFDGVLKIDGEVGNKKVYDPRSYLKKAEEAMSVRVVEACNDLHSAGTSVAK
>LS483459.1|SQI24695.1|2397029_2397569_-|Protein-of-uncharacterised-function-(DUF3151)
MAEQIRHSRDLFGAEHPEVRLPQELASSIPVEGAAGAGGGASTAQSRESLEAAVSENLKDSGAWAALAEVLLAEGQPVQAYACARTGYHRGLDALRGNGWRGTGPVPWNHEPNQGVLRAIGALVQTARALGEDDEVVRCLNLLHDCDPAAAPALGLDGSGKKAESKPITEPGATPPAEG
>LS483459.1|SQI24692.1|2396067_2396967_-|Uncharacterized-protein-conserved-in-bacteria
MNRNLCIVTLVVAILWMSSILWPAEPTAGWPFVAEMQASAWVAGVLAAAGIGILRSVRRAALCAVLALLAVLIVPRVPAPNFSDATNPTRVFSLNTYWGKADDKRIARAIDELKPDVVFLLETNTEEVASVADKTGYLPMTQPRPGNDRADNVVALVSASYKEETGAHGNMVRGLTRFQTPRVNAPLHGNSEFVGVHAVAPAKDDRPAWERDLANLSEWANSRRHLVLAGDFNATRSHPRYRDFELSDCTGHLAHTPTWPAVFPVIRLDHIMTTGECLGGGTKRILGTDHLAVWADVTT
>LS483459.1|SQI24690.1|2394818_2396018_-|hypothetical-membrane-protein
MWGEPANRLRPGVRAAARNLRRIAPVQGAIRVREGIVFAIQCAIGAGLALLIAEQIFDHQQAFFAPIAAVLSLGVSAGKRLRRGFELVLGASVGVGIGDLVISNIGSGYWQVSVVVLFAIMVATFVDKSVSVAFQAASSAVLVATILPPGSSGSWDRMIDALIGGVIGILVLALVPNSPLRPARREVSTLISKASLVLDDVAQGMEERDTAKITKALEIARGTQTYVNALLTNVGGGSEVVAVSPIYWTARRHAKSMNRILVPVDNVMRNTRVLARRAEIMMLDEVEPPEEMIELMRGISNELGQLGALFAEGGTRGTRDEAVEIPEIVRALQKLAAEADLAIAEGTGLSGTVVLAQCRSIIVDALQVCGYSRESAMAFLRPTVDRPWQPPEVWDDLEE
>LS483459.1|SQI24688.1|2390775_2394705_-|cell-surface-protein
MMFLRSRRAMTAVAAASSLVLTATAVPQSPFSPVAAQAATANKTQDTNLPLKCTLFAAGGPKNKIPFVGRGFMENRDFTGNFHVTMPGQVEVGEVFEASVSMDSLSASHSLLRQLGGSPSFEEGSAANKVRFAVKGDVDLVESNPPATLKNGVLTVEKMMQPSKSGDTVTIAFAPLKLKFKAKKAGLVEIQTPEAYKTPDSHGGVRNNNMFHGEGIAGTVFGKTPGLRVTCLTDRFTPLGATQVGKDAEFNEPKYSAIEVKQQDTAASKNTAQAPEGTTYAKGAEAPEWATVGQDGTVTVKPGLDVKPGDYTVPVVVTYPDTSADNTVVKVKVTVKPKNELHTPKYTDVTVVQDKEETSAKPSDAGEGSTFAAGEGAPTWATVNADGTVTVKPGMDVKPGEHPVPVKVTYSDKSVGNATLTVHVKPKPANEVHDPKYTDIKVKQGDEETAAAPKDVADGTKFAPGEGVPEWITVNENGTIEAKPTLETEVKEYTVPVTVTYPDGTSDKTELKVEVTKKPDNEIHNPQYDDVTVKQLDTETVAAPKDVAQGAKFALGDNAPDWASVAEDGTVTVNPGLDVPEGDYTVPVVVSYPDNSADKTEVNVHVKVKPANELHDPKYTDTSVVQESTATVAAPADMPDGTKFAAGEGVPEWITVNENGTIEAKPTLETEVKEYTVPVTVTYPDGSTDNTSVKVNVTKKPDNEIYSPELGSITVKANRTAKTSAIEGLPADTKFALADGAPSWATIGDKGVVQLNPGGDVAPQDYDVPVTITYPDGTEDTATLKVTVTERDIAEVHDPAYAPIEVVQTETGTVAAPTDSTADAEYSLGAGAPKWATLNKDGSIEVNPDLHVETGEYNLPVTVVYKDNSSDRTTAVVTVTKKPDNEIHDPTYSDVTVKQGDEVTAPAPADVAEGATFEAGEGVPSWITVNPDGTVTAKPGLEVEAKEYTVPVKVTYPDKTGDDTTVNVTVTVKPTNELHDPTYSDVTVKQGDEETAPAPTDVAEGAKFAAGEGAPEWATVNEDGSVTVKPGLEVVDGKYTVPVKVTYPDTSADDTTVNITVTVKPANEIHDPTYSDVTVKQGDEVTAPAPTDVAEGATFEAGEGVPSWITVNPDGTVTAKPGTDVEAKEYTVPVKVSYKDGSGDDTTVNITVTVKPTNEKYDPTYPGADVKQGGETTVAPPADVADDAEFALGEGAPEWATVNEDGTVTLKPSKEVELGDYDVPVVITYPDGSTTTTTLKVTIKEQDKQNDNTGSTGSGDGLFGSLEGSSSITGSSPFGTFLAALFGTIAIGAGLFGLYNWARDHGYVR
>LS483459.1|SQI24686.1|2389860_2390763_+|Uncharacterised-protein
MLFMLRCDVPASDRLRDPVLPGEAVECLDLSAVPKRKELRFLDDLERFVVGSTPSLEEMMQRPDAPHLGAPQPDPHEVSERVRVIVQGSDAALAAVVSKLMRIDALWVEVGFIPSGSSAVALSWGLDATFSPAEHLTFALASPAVPTPVIRDDHGVVTLGAAEVTGPVNPAGSADSEGAASSASASENATEMIGEVIVDSEILYEQAKAGTSDFNNGVRLVPTPDAPGLAAVQRPPLPRKGWFGRIKKPRSTVSPTVLRGRALQAGGVDLAVTRDGVRHPRPLKSVTFYRHLRDGQFVRN
>LS483459.1|SQI24685.1|2388390_2389680_-|adenylosuccinate-synthetase
MASIIVVGAQWGDEGKGKATDILGGKVDYVVKPNGGNNAGHTVVVGGEKYELKLLPAGVLSENATPIIGNGCVVNLEALFEEIDGLEARGANASRLRVSANAQLVAPYHVAIDRVAERFLGKRAIGTTGRGIGPTYADKVSRVGIRAQDLLDESILRQKIESALDQKNQILVKIYNRRAVDVDEVVEYFLSYADRLKPMLIDVSTELNQALDAGKSVLMEGGQATMLDVDHGTYPFVTSSNPTTGGACVGTGIGPTRITASLGIIKAYTTRVGAGPFPTELFDKWGEFLQTTGGEVGVNTGRKRRCGWYDSVIARYASRVNGFTDYFLTKLDVLTGIGEIPICVAYDVDGVRHDEMPMTQTEFHHATPIYETMPAWDEDITDCKTFEELPQKAQDYVKRLEELSGCRISYIGVGPGRDQTIVINDVAES
>LS483459.1|SQI24683.1|2386635_2388360_+|Choline/Carnitine-o-acyltransferase
MQDNRAHLKPLPVPPLDATLPALRHAVSAVADADMLAATERAIEDFQANQGPALQSALEAFAADRDAANSSWLADRWLRDYLTVRTPLQTTSNVGFQINLRTGTSGLDRAVDILRALALVHLKQADGSMPEEVDGRGNPLDANQWRCFNGALRIPRPDCDEVTFSELGTASRSIGVIVDGHVFDLRITDEQGRLASREQLRATLEVLRTNSDTAGSAASTGETAEPALDARLSYLGSAALAELPLPAETQATLRDQLFALHLIDDAQATEADLLRDLTFAPGHAWVYKPLTYEINLASNFAAIHVEHSTVDGATLVEAVRRVQEAVDSDAPTAANADADATPADVAPLELSPVAPAASIPTGDEYAVEIIEVPKLAKEELPFKFSADAMSQLILSIAQQLTFGRIRAVYEAVDMREYKAGRTECLRAVTPEAVAFSKQLVAGKPTVEALQEALNAHRNWVIGCKTGRGIDRHLWALSFTSEKQSGAPLALLADPGVKAARTDFLSTTSIGSDAHIIRYVFAPTIPNGFGVNYTPKATSIEYCLTFSRDKAEQPEQFQANLTRAAELLADFLRAL
>LS483459.1|SQI24680.1|2384857_2386480_-|acyl-CoA-synthetase
MPIQSPQQEIDIPNSTIYDVLFGNIAEEDLGRIAITDDATGSQTTYGELKALIDAFAGALADRGVKPGVVVGLHCPNSLAFAVAFHGILRAGATVTTLGSLLNAHDVAKQLKDSGATFVLTTKLLGEAGVLGAEEAGIDPSNIIDLTDEATGLKALVREGRPAPEVTIDPATHVAVLPYSSGTTGVPKGVRLSHRNLVANILQIGVRLGPNGLDRDSVVMCVLPFFHIYGMNVLLNSCLYVRAHVVTMPSFDLEKFLAAHQKHGITFTFIAPPIAVALAKHPLVDKFDIGSLETVLSGAAALDGQLANAVANRLGVRILQGFGMTETSPVTSVSDVGVTPLDSIGLPVSNTEVKIVDITTEDLAEIHPPANEGERSIEGEMWVRGPQVMLGYLNNEEATANTITPDGWLRTGDIANLDHLGNAYVVDRMKELIKYKGYQVAPAELEALLMTHEAIADAAVVGYLRESDGEELPRAFLVLQQGVDPNDPAVSAEALMEWVAERVTPYKKIRMVEFIDAIPKSSTGKILRKDLKNVPVAAKV
>LS483459.1|SQI24701.1|2400546_2401230_-|rRNA-methylase
MTPTSPEPHDKPGPTEWLEHPRGVRSWEEEHPDQPRPTDARFDPELLDAGDRRNVVDAYRYWKQSAIIADIDTRRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLQHHATVGEVLEFAAREELVVVAVDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDAARMTVSIAQFGSTRSINAGVAAGIAMHAWIRQHADLSQAW
>LS483459.1|SQI24704.1|2401239_2401782_-|orotate-phosphoribosyltransferase
MIDESKKQRLAELVKELAVVHGRVTLSSGKEADYYVDLRRATLHHEASPLIGELLRELTADWGYAHVGGLTLGADPVATAIMHADGNPIDAFVVRKEAKKHGMQRRIEGPDIEGKRVLIVEDTTTTGNSPLTAVAAAREAGATVVGVATVVDRATGAKDVIEAEGVEYRSLLGLSDLGLS
>LS483459.1|SQI24706.1|2401800_2403585_-|putative-secreted-protein
MVGSMFALILGLALLGLAVWLLLRAKDSTGEGTDGYARGNSYEAADWSTDEGYVDGSFEDDSEGEPEGNEWPEGEGGEWSELDDEEWSAGWDGPQFDSWSGDDDESGEDYDYEDDADDYQADSADDGLGESPADDWAEEPSEDWSDDEPAEGESPVSPTPAAAPASGPASAMAAFGFPRRRRRQWAADNGFEYTKEDSEVARDWPITILGDQRRGVPTLREVVSGFVDGHQVHIGDVGSSTLMAMRRVEESPVQVLYSVDAAQPAGMRRTDLLDQPPFAAYTTDVRALDRMLDARVEDSLAALSQVARDVAWGQNWTVVRISRKLDFHVWQKILPRLRSLVDAAMVLPPAQTSAPLEMLSADQLRPLPGGPLQVNTADPVNQEEIEEQAAETSSRRAAHLRAVPDGAADTNAEGSDDTASAAAEFNPAQDNTVRTEEAAAHAEVPNPERPDITRPAEPVTFPSRTHTRWEGGDPDSFESFAVGDYDDPAEDDDLHAGRRRRRDGGIPRLGEDPEHMSSHNSQYAQVIRVEAEEATIFEEFEETKSTAVRLSPVTQRRRSGGRHRAPEARHARPEPIEPIEYETVDGEVVEDDQQ
>LS483459.1|SQI24708.1|2403596_2403980_-|glycine-cleavage-system-protein-H
MTALPTDFLYSEEHEWVNTSAVVEGETVRVGITHIAAEALGDIVFVELPEVGSEVEAGEAFGEVESTKSVSDIYAPVSGEVVAVNEALEDNAGLINEDPYGEGWLYEVKVTEAGELMEAEAYQAANE
>LS483459.1|SQI24710.1|2404081_2405251_-|glycine-cleavage-system-aminomethyltransferase-T
MTELKKTALHLVHEKLGARFTDFGGWDMPLKYSSELDEHHAVRNAVGVFDLSHMGEVRVTGPQAAEFLDHALISKLSAVKVGKAKYSMICTESGGIIDDLITYRLGDNEFLIVPNAGNVDNVVSALQGRTEGFDVEVNNESDATSMIAVQGPKAAQAMLEIVENVVDAPEASGAGETVAEAIEGLGYYAAFSGVAAGQPVLVARTGYTGEDGFELIVANDGAETVWTKAMDQAAQLGGLPCGLACRDTLRLEAGMPLYGNELSLKLTPVDAGLGILAATKSKDSFVGRDAIVSAKEKGTQQVLIGLAGEGRRAARGGYEVFAGDGEKAIGAVTSGALSPTLGHPVALAYVAKSAVSSGAAAEGATVEVDIRGKRFEYKVVALPFYSREK
>LS483459.1|SQI24712.1|2405299_2408266_-|glycine-dehydrogenase
MSSAATRRNSAPFVQRHIGPNQADTQEILDYLGYESSVALADDALPKSICQAGPIGLPEALDEADTLAALRAYADKNVQKQQLIGNGYFDTITPAVIRRNVVENPGWYTAYTPYQPEISQGRLEALLNFQTMVQDLTGLPVAGASLLDEATAVAEAVQLMARGNAKAAKKGGVVLLDSSLHQQSITVTLARAEAAGIPVEVVDLDGEDGAGESAAAAFEGRENLVGVVLSNPGSTGRVRDLSGLISAAKEAGALVTVACDLLAQVLVTSPGSQGADIAVGSAQRFGVPLFFGGPHAGFISCTEALQRKLPGRIVGVSVDAEGTPAYRLALQTREQHIRRDKATSNICTAQALLAVVAGFYAVWHGPAGLRAIAEGVHARATALAVALSEAGLTLAHDTFFDTVTVDVSGSSLGDAPTALRAAAEAGYNLRQVNDSFVGISVGESTTDGDIAKLIEVLGSRTGEVNSASFDVTAGPLGEAGVLRAEDEEILTHPIFTAITSETQMMRYMRKLADRDLALDRTMIPLGSCTMKLNAAVSMEPITWPGFAGIHPHVPAEQAQGWLELIEDLEERLAKITGYAKVSVQPNAGSQGEFAGLLAIHRYHQSRGDDQRDIVLIPASAHGTNAASAALAGLKVVAVKNAEDGSIDVPDLEAKLEKYGEQTAAIMLTYPSTHGVFEEQVRDVCQKVHDAGGQVYVDGANLNALVGLAQPGEFGGDVSHLNLHKTFTIPHGGGGPGVGPVCVAEHLIPFLPTDPNADVIDGDAALQTGQPVSGAQYGSAGVLPITWSYIAQMGDEGLTEASRMALVNANYVSRKLEDYFPTLYKGDTGLVAHECILDLRELTKASGITAEDVSKRLMDFGFHAPTLAFPVAGTLMMEPTESEDKEELDRFIEAMITIHGEIQEVIDGKVTAEQSILRHAPFTAYSVVRDDFEEAVSGGHFSRAKAAYPVASLRHTKYFTPVRRIDNAYGDRNLVCTCPPLEDFAINED
>LS483459.1|SQI24714.1|2408646_2409561_+|dehydrogenase-related-to-short-chain-alcohol-dehydrogenases
MSMAKLSSILPFPSRSLPAVNGGVAIVTGASSGIGRATVAALAELKADATTGDSSGTGTGTYVPDRIIGTSRNPDSITDPIDGVDYLPLDLEDPASIDEFATRALTLGPPTVLVNNAGESQSGPLEELPDDALHRLFEINVLGQVGVTKKILPTMRQQGAGRIVMVGSMLGSFPLAYRSSYVASKAAIKGFAFAARREVQPFGVGITVVEPGSINTGLSTRRTKYVDLQGPYGAEFTTMLTNLDNNEANGISAERVAEEILKPITAARPKPLYATGSMAPVVFPLSRVLPTATMHWLINRKHGL
>LS483459.1|SQI24716.1|2409616_2410075_-|Uncharacterised-protein
MTRRIFSILSVVGMILALSRVVEIFTPQQLQSIAGVYFAVLAVLQVWPLAATQRNSYGHRRHPVNRLYTLMSSIGLVGTALLAMVFYVTSPLWLIVVAGMLMIMGIVGAAVLALFAAPWDDWSTRRGRDVDDELFLRDDEPVEDVWDKSFRT
>LS483459.1|SQI24717.1|2410091_2410709_-|PTS-system-IIABC-component
MVRFRLAPHRARLNCRSMDPNFSLDPRRPGQQREVAAQNHSAKFPVVTPLAGTAVSLDSVPDPILATGTIGAGVAVIPDAGVEVVQILAPIGGVMKRVAPNMFVIQTQSVPGGSHAETLADQPSIFMQLGVDTGRLNGQGFDVHVQEGDLVRQGTPVCTCAPRELGRMGFDPVVMVLGLQMGASEIKLDVFSGEPVMDGDNLFWV
>LS483459.1|SQI24720.1|2410669_2411557_-|thiosulfate-sulfurtransferase
MSNSSAQQQPASPFVSGEEMLEAFQRGERMTVIDSHWARTENSAWEAYVGQHIPGAMFCNPLMHLASIPSRHKGRNPLPEPERLQKSFDDWGITDGRPVYIYDAGANLYAARAWFIFRWAGVQNVRILDGGTSSWESAGGDVAGGIGALRGRGNVAVRPGSMPTLDLEEVEQWREERILVDAREPSRYSGRKERFDHQAGRIPGAINVPVKELFNNHSERDSSASGHVKTPEEIRKILAENGVTSGDDVCVYSGSGLHSSLFIAAMEYAGLPGAKNFVGGWSQWSASASRPIERD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483459_4	4.59\|1902608\|32\|LS483459\|CRT	1902608-1902639	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1119115-1119146	4	0.875
LS483459_4	4.18\|1902607\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902607-1902639	33	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1119114-1119146	5	0.848
LS483459_4	4.24\|1902973\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902973-1903005	33	HQ683709	Planktothrix phage PaV-LD, complete genome	71204-71236	5	0.848
LS483459_4	4.65\|1902974\|32\|LS483459\|CRT	1902974-1903005	32	HQ683709	Planktothrix phage PaV-LD, complete genome	71205-71236	5	0.844
LS483459_4	4.48\|1901937\|32\|LS483459\|CRT	1901937-1901968	32	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	262747-262778	6	0.812
LS483459_4	4.56\|1902425\|32\|LS483459\|CRT	1902425-1902456	32	NZ_CP008945	Corynebacterium atypicum strain R2070 plasmid phiCATYP2070I, complete sequence	5044-5075	6	0.812
LS483459_4	4.42\|1901571\|32\|LS483459\|CRT	1901571-1901602	32	MH067975	Arthrobacter sp. strain ANT_H58 plasmid pA58H2, complete sequence	44516-44547	7	0.781
LS483459_4	4.42\|1901571\|32\|LS483459\|CRT	1901571-1901602	32	MN617843	Mycobacterium phage Quesadilla, complete genome	3575-3606	7	0.781
LS483459_4	4.47\|1901876\|32\|LS483459\|CRT	1901876-1901907	32	GU071097	Synechococcus phage S-SSM5, complete genome	45166-45197	7	0.781
LS483459_4	4.47\|1901876\|32\|LS483459\|CRT	1901876-1901907	32	AP017924	Ralstonia phage RP12 DNA, complete genome	39042-39073	7	0.781
LS483459_4	4.47\|1901876\|32\|LS483459\|CRT	1901876-1901907	32	AP017925	Ralstonia phage RP31 DNA, complete genome	36497-36528	7	0.781
LS483459_4	4.52\|1902181\|32\|LS483459\|CRT	1902181-1902212	32	MN693295	Marine virus AFVG_25M553, complete genome	9571-9602	7	0.781
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	MN694577	Marine virus AFVG_250M507, complete genome	36162-36193	7	0.781
LS483459_4	4.56\|1902425\|32\|LS483459\|CRT	1902425-1902456	32	NZ_CP012383	Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence	53888-53919	7	0.781
LS483459_4	4.59\|1902608\|32\|LS483459\|CRT	1902608-1902639	32	NZ_AP018665	Sphingobium amiense strain DSM 16289 plasmid pSAMIE_2, complete sequence	89551-89582	7	0.781
LS483459_4	4.59\|1902608\|32\|LS483459\|CRT	1902608-1902639	32	NZ_CP039694	Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence	403051-403082	7	0.781
LS483459_4	4.59\|1902608\|32\|LS483459\|CRT	1902608-1902639	32	NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	127966-127997	7	0.781
LS483459_4	4.59\|1902608\|32\|LS483459\|CRT	1902608-1902639	32	NZ_CP022747	Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence	112569-112600	7	0.781
LS483459_4	4.1\|1901570\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1901570-1901602	33	MH067975	Arthrobacter sp. strain ANT_H58 plasmid pA58H2, complete sequence	44515-44547	8	0.758
LS483459_4	4.13\|1902302\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902302-1902334	33	MN694577	Marine virus AFVG_250M507, complete genome	36161-36193	8	0.758
LS483459_4	4.19\|1902668\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902668-1902700	33	MK279875	Arthrobacter phage Riverdale, complete genome	940-972	8	0.758
LS483459_4	4.19\|1902668\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902668-1902700	33	MK279876	Arthrobacter phage Rozby, complete genome	940-972	8	0.758
LS483459_4	4.19\|1902668\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902668-1902700	33	NC_041940	Arthrobacter phage Glenn, complete genome	940-972	8	0.758
LS483459_4	4.27\|1903156\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1903156-1903188	33	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2291004-2291036	8	0.758
LS483459_4	4.47\|1901876\|32\|LS483459\|CRT	1901876-1901907	32	KT997847	Uncultured phage_Deep1-GF2-KM23-C739 genomic sequence	30618-30649	8	0.75
LS483459_4	4.53\|1902242\|32\|LS483459\|CRT	1902242-1902273	32	KY555147	Caulobacter phage Ccr34, complete genome	130663-130694	8	0.75
LS483459_4	4.53\|1902242\|32\|LS483459\|CRT	1902242-1902273	32	KY555146	Caulobacter phage Ccr32, complete genome	130223-130254	8	0.75
LS483459_4	4.53\|1902242\|32\|LS483459\|CRT	1902242-1902273	32	JX163858	Caulobacter phage phiCbK, complete genome	77606-77637	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	428947-428978	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	998123-998154	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	1022438-1022469	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	374900-374931	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	586709-586740	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	1082676-1082707	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	1575413-1575444	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	605266-605297	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP021827	Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence	1063758-1063789	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	526631-526662	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	40008-40039	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	483120-483151	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	1200867-1200898	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	1023663-1023694	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	986310-986341	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	1300837-1300868	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	171625-171656	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	1287380-1287411	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	495446-495477	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	856389-856420	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	819139-819170	8	0.75
LS483459_4	4.54\|1902303\|32\|LS483459\|CRT	1902303-1902334	32	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	996462-996493	8	0.75
LS483459_4	4.55\|1902364\|32\|LS483459\|CRT	1902364-1902395	32	NZ_AP022623	Mycobacteroides abscessus strain JCM 30620 plasmid pJCM30620_2	21308-21339	8	0.75
LS483459_4	4.55\|1902364\|32\|LS483459\|CRT	1902364-1902395	32	NC_021278	Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence	138693-138724	8	0.75
LS483459_4	4.57\|1902486\|32\|LS483459\|CRT	1902486-1902517	32	NZ_AP022623	Mycobacteroides abscessus strain JCM 30620 plasmid pJCM30620_2	21308-21339	8	0.75
LS483459_4	4.57\|1902486\|32\|LS483459\|CRT	1902486-1902517	32	NC_021278	Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence	138693-138724	8	0.75
LS483459_4	4.58\|1902547\|32\|LS483459\|CRT	1902547-1902578	32	NZ_CP042264	Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence	168828-168859	8	0.75
LS483459_4	4.59\|1902608\|32\|LS483459\|CRT	1902608-1902639	32	NZ_CP028971	Aminobacter sp. MSH1 plasmid pUSP3, complete sequence	32811-32842	8	0.75
LS483459_4	4.60\|1902669\|32\|LS483459\|CRT	1902669-1902700	32	MK279875	Arthrobacter phage Riverdale, complete genome	941-972	8	0.75
LS483459_4	4.60\|1902669\|32\|LS483459\|CRT	1902669-1902700	32	MK279876	Arthrobacter phage Rozby, complete genome	941-972	8	0.75
LS483459_4	4.60\|1902669\|32\|LS483459\|CRT	1902669-1902700	32	NC_041940	Arthrobacter phage Glenn, complete genome	941-972	8	0.75
LS483459_4	4.66\|1903035\|32\|LS483459\|CRT	1903035-1903066	32	MH807815	Dickeya phage Luksen, complete genome	1817-1848	8	0.75
LS483459_4	4.68\|1903157\|32\|LS483459\|CRT	1903157-1903188	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2291005-2291036	8	0.75
LS483459_4	4.68\|1903157\|32\|LS483459\|CRT	1903157-1903188	32	NZ_CP023524	Burkholderia gladioli pv. gladioli strain FDAARGOS_389 plasmid unnamed, complete sequence	72770-72801	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	KX388536	Agrobacterium tumefaciens strain Chry5 plasmid pTiChry5, complete sequence	139434-139465	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	KY000035	Agrobacterium sp. strain EHA101 plasmid pTi_EHA101, complete sequence	104079-104110	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	KY000037	Agrobacterium sp. strain LBA4404 plasmid pTi_LBA4404, complete sequence	77583-77614	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	NZ_CP026926	Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609, complete sequence	21047-21078	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	NZ_CP011249	Agrobacterium tumefaciens strain Ach5 plasmid pTi, complete sequence	159357-159388	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	NC_010929	Agrobacterium tumefaciens Ti plasmid pTiBo542, complete sequence	161095-161126	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	NC_002377	Agrobacterium tumefaciens plasmid Ti, complete sequence	159234-159265	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	NZ_CP032920	Agrobacterium tumefaciens strain 15955 plasmid pTi15955, complete sequence	52039-52070	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	NZ_CP033030	Agrobacterium tumefaciens strain A6 plasmid pTiA6, complete sequence	52039-52070	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	NZ_KY000030	Agrobacterium genomosp. 1 strain CFBP5767 plasmid pTi_CFBP5767, complete sequence	125548-125579	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	NZ_KY000074	Agrobacterium larrymoorei strain CFBP5481 plasmid pTi_CFBP5481, complete sequence	150852-150883	8	0.75
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	NZ_KY000061	Agrobacterium tumefaciens strain CFBP2413 plasmid pTi_CFBP2413, complete sequence	3135-3166	8	0.75
LS483459_4	4.75\|1903585\|32\|LS483459\|CRT	1903585-1903616	32	MT251347	Klebsiella phage LASTA, complete genome	28846-28877	8	0.75
LS483459_4	4.75\|1903585\|32\|LS483459\|CRT	1903585-1903616	32	MT251348	Klebsiella phage SJM3, complete genome	28846-28877	8	0.75
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	NC_015427	Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence	38611-38642	8	0.75
LS483459_4	4.78\|1903768\|32\|LS483459\|CRT	1903768-1903799	32	NZ_CP044217	Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence	68843-68874	8	0.75
LS483459_4	4.7\|1901936\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1901936-1901968	33	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	144155-144187	9	0.727
LS483459_4	4.10\|1902119\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902119-1902151	33	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	349380-349412	9	0.727
LS483459_4	4.14\|1902363\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902363-1902395	33	NC_021278	Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence	138692-138724	9	0.727
LS483459_4	4.14\|1902363\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902363-1902395	33	NZ_AP022623	Mycobacteroides abscessus strain JCM 30620 plasmid pJCM30620_2	21308-21340	9	0.727
LS483459_4	4.19\|1902668\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902668-1902700	33	MF140400	Arthrobacter phage Canowicakte, complete genome	962-994	9	0.727
LS483459_4	4.19\|1902668\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902668-1902700	33	KX621004	Arthrobacter phage Suppi, complete genome	962-994	9	0.727
LS483459_4	4.19\|1902668\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902668-1902700	33	MK279886	Arthrobacter phage TattModd, complete genome	940-972	9	0.727
LS483459_4	4.25\|1903034\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1903034-1903066	33	MH807815	Dickeya phage Luksen, complete genome	1816-1848	9	0.727
LS483459_4	4.32\|1903461\|34\|LS483459\|PILER-CR,CRISPRCasFinder	1903461-1903494	34	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	824441-824474	9	0.735
LS483459_4	4.37\|1903767\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1903767-1903799	33	NZ_CP044217	Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence	68842-68874	9	0.727
LS483459_4	4.45\|1901754\|32\|LS483459\|CRT	1901754-1901785	32	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	775938-775969	9	0.719
LS483459_4	4.48\|1901937\|32\|LS483459\|CRT	1901937-1901968	32	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	144155-144186	9	0.719
LS483459_4	4.51\|1902120\|32\|LS483459\|CRT	1902120-1902151	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	349380-349411	9	0.719
LS483459_4	4.53\|1902242\|32\|LS483459\|CRT	1902242-1902273	32	NZ_CP039640	Azospirillum sp. TSH100 plasmid p1, complete sequence	121449-121480	9	0.719
LS483459_4	4.60\|1902669\|32\|LS483459\|CRT	1902669-1902700	32	MF140400	Arthrobacter phage Canowicakte, complete genome	963-994	9	0.719
LS483459_4	4.60\|1902669\|32\|LS483459\|CRT	1902669-1902700	32	KX621004	Arthrobacter phage Suppi, complete genome	963-994	9	0.719
LS483459_4	4.60\|1902669\|32\|LS483459\|CRT	1902669-1902700	32	MK279886	Arthrobacter phage TattModd, complete genome	941-972	9	0.719
LS483459_4	4.69\|1903218\|32\|LS483459\|CRT	1903218-1903249	32	NZ_CP010863	Marinovum algicola DG 898 plasmid pMaD8, complete sequence	7936-7967	9	0.719
LS483459_4	4.73\|1903462\|33\|LS483459\|CRT	1903462-1903494	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	824441-824473	9	0.727
LS483459_4	4.75\|1903585\|32\|LS483459\|CRT	1903585-1903616	32	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	96718-96749	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	NZ_CP046574	Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence	69575-69606	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	LN610574	Pseudomonas phage vB_PaeP_PAO1_Ab05, complete genome	7890-7921	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	NC_005045	Pseudomonas phage phiKMV, complete genome	7117-7148	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	AJ505558	Bacteriophage phiKMV complete genome	7117-7148	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	KC969441	UNVERIFIED: Pseudomonas phage MBL, complete genome	7267-7298	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MN692672	Pseudomonas phage vB_PaeP_Lx18, complete genome	23178-23209	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MN615699	Pseudomonas phage vB_PaeP_SPCG, complete genome	7597-7628	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MN615698	Pseudomonas phage vB_PaeP_SPCB, complete genome	7653-7684	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	NC_009935	Pseudomonas phage LKD16, complete genome	7459-7490	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MN553588	UNVERIFIED: Pseudomonas phage phiKMVC5-12, complete genome	15430-15461	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	NC_047852	Pseudomonas phage phiNFS, complete genome	7173-7204	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	NC_047953	Pseudomonas phage vB_PaeP_130_113, complete genome	7659-7690	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MN871483	UNVERIFIED: Pseudomonas phage PaSz-8_45_42k, complete genome	35913-35944	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	LN610580	Pseudomonas phage vB_PaeP_PAO1_1-15pyo, complete genome	7483-7514	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	EU236438	Pseudomonas phage PT2, complete genome	7477-7508	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MN553585	UNVERIFIED: Pseudomonas phage 4phiC20-1 clone 9, complete genome	35260-35291	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	KR054031	Pseudomonas phage DL62, complete genome	7420-7451	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MN553589	UNVERIFIED: Pseudomonas phage phiKMVC5(121) clone 13, complete genome	35259-35290	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	AM910651	Pseudomonas phage LUZ19, complete genome	7556-7587	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	NC_011105	Pseudomonas phage PT5, complete genome	7482-7513	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MN602045	Pseudomonas phage vB_PaeP_ASP23, complete genome	9629-9660	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	KX711710	Pseudomonas phage vB_Pae-TbilisiM32, complete genome	7482-7513	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MN901924	Pseudomonas phage vB_PaeP_PE3, complete genome	7509-7540	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MN553587	UNVERIFIED: Pseudomonas phage phiKMVC5(121) clone 4a, complete genome	15557-15588	9	0.719
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	AM265638	Bacteriophage LKD16 complete genome, specific host Pseudomonas aeruginosa	7459-7490	9	0.719
LS483459_4	4.30\|1903339\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1903339-1903371	33	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	76099-76131	10	0.697
LS483459_4	4.32\|1903461\|34\|LS483459\|PILER-CR,CRISPRCasFinder	1903461-1903494	34	NZ_CP035035	Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence	102698-102731	10	0.706
LS483459_4	4.42\|1901571\|32\|LS483459\|CRT	1901571-1901602	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	428759-428790	10	0.688
LS483459_4	4.52\|1902181\|32\|LS483459\|CRT	1902181-1902212	32	MF185717	Mycobacterium phage AlleyCat, complete genome	37064-37095	10	0.688
LS483459_4	4.55\|1902364\|32\|LS483459\|CRT	1902364-1902395	32	MH992131	UNVERIFIED: Thermus phage TSP4, complete genome	44693-44724	10	0.688
LS483459_4	4.59\|1902608\|32\|LS483459\|CRT	1902608-1902639	32	NZ_CP049031	Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence	76602-76633	10	0.688
LS483459_4	4.61\|1902730\|32\|LS483459\|CRT	1902730-1902761	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1118013-1118044	10	0.688
LS483459_4	4.61\|1902730\|32\|LS483459\|CRT	1902730-1902761	32	NZ_AP017660	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_6	25074-25105	10	0.688
LS483459_4	4.61\|1902730\|32\|LS483459\|CRT	1902730-1902761	32	NZ_AP018667	Sphingobium amiense strain DSM 16289 plasmid pSAMIE_4, complete sequence	27492-27523	10	0.688
LS483459_4	4.61\|1902730\|32\|LS483459\|CRT	1902730-1902761	32	NZ_CP033227	Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence	267292-267323	10	0.688
LS483459_4	4.71\|1903340\|32\|LS483459\|CRT	1903340-1903371	32	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	76100-76131	10	0.688
LS483459_4	4.73\|1903462\|33\|LS483459\|CRT	1903462-1903494	33	NZ_CP035035	Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence	102698-102730	10	0.697
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	KU878088	Bacillus phage AR9, complete genome	106624-106655	10	0.688
LS483459_4	4.76\|1903646\|32\|LS483459\|CRT	1903646-1903677	32	MF360957	Bacillus virus PBS1, complete genome	16927-16958	10	0.688
LS483459_4	4.20\|1902729\|33\|LS483459\|PILER-CR,CRISPRCasFinder	1902729-1902761	33	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1118013-1118045	11	0.667
LS483459_4	4.59\|1902608\|32\|LS483459\|CRT	1902608-1902639	32	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	234784-234815	11	0.656
LS483459_4	4.65\|1902974\|32\|LS483459\|CRT	1902974-1903005	32	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	185386-185417	11	0.656

1. spacer 4.59|1902608|32|LS483459|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.875

tcttccgcgcctgctccgcaaacgccatcgac-	CRISPR spacer
tgttccgctcctgctccgcaaccgccat-gaca	Protospacer
* ****** ************ ****** ***

2. spacer 4.18|1902607|33|LS483459|PILER-CR,CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.848

gtcttccgcgcctgctccgcaaacgccatcgac-	CRISPR spacer
ttgttccgctcctgctccgcaaccgccat-gaca	Protospacer
 * ****** ************ ****** ***

3. spacer 4.24|1902973|33|LS483459|PILER-CR,CRISPRCasFinder matches to HQ683709 (Planktothrix phage PaV-LD, complete genome) position: , mismatch: 5, identity: 0.848

gtttttcggtgaaggtgaaggttttggagttgg	CRISPR spacer
gtcattgggtaaaggtgaaggttttggagttag	Protospacer
**. ** ***.********************.*

4. spacer 4.65|1902974|32|LS483459|CRT matches to HQ683709 (Planktothrix phage PaV-LD, complete genome) position: , mismatch: 5, identity: 0.844

tttttcggtgaaggtgaaggttttggagttgg	CRISPR spacer
tcattgggtaaaggtgaaggttttggagttag	Protospacer
*. ** ***.********************.*

5. spacer 4.48|1901937|32|LS483459|CRT matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 6, identity: 0.812

ggcaaggggtgggtggtgacggcgga-cggtcg	CRISPR spacer
tggaaggggtgggcggtgacgtcggagcggac-	Protospacer
 * **********.******* **** *** *

6. spacer 4.56|1902425|32|LS483459|CRT matches to NZ_CP008945 (Corynebacterium atypicum strain R2070 plasmid phiCATYP2070I, complete sequence) position: , mismatch: 6, identity: 0.812

caaacgatccaaaccggcatcgacgggttccg	CRISPR spacer
cacgccatccaaaccggcatcgccggtttcgg	Protospacer
** .* **************** *** *** *

7. spacer 4.42|1901571|32|LS483459|CRT matches to MH067975 (Arthrobacter sp. strain ANT_H58 plasmid pA58H2, complete sequence) position: , mismatch: 7, identity: 0.781

gttgtgttcaggtggtcggctgggtcttccag	CRISPR spacer
gttgtgtgcaggtggtcggttgggtcccggcg	Protospacer
******* ***********.******..   *

8. spacer 4.42|1901571|32|LS483459|CRT matches to MN617843 (Mycobacterium phage Quesadilla, complete genome) position: , mismatch: 7, identity: 0.781

gttgtgttcaggtggtcggctgggtcttccag	CRISPR spacer
gtccggctcaggtgctcggcggggtcttcccg	Protospacer
**.  *.******* ***** ********* *

9. spacer 4.47|1901876|32|LS483459|CRT matches to GU071097 (Synechococcus phage S-SSM5, complete genome) position: , mismatch: 7, identity: 0.781

accaccgtggccttagaggtgatgtaggtgca	CRISPR spacer
agaatcctcgccttaaaggtgatgtagttgca	Protospacer
*  *.* * ******.*********** ****

10. spacer 4.47|1901876|32|LS483459|CRT matches to AP017924 (Ralstonia phage RP12 DNA, complete genome) position: , mismatch: 7, identity: 0.781

accaccg-tggccttagaggtgatgtaggtgca	CRISPR spacer
-tcatcgagggccttggtggtgatgtaggtgct	Protospacer
 .**.**  ******.* **************

11. spacer 4.47|1901876|32|LS483459|CRT matches to AP017925 (Ralstonia phage RP31 DNA, complete genome) position: , mismatch: 7, identity: 0.781

accaccg-tggccttagaggtgatgtaggtgca	CRISPR spacer
-tcatcgagggccttggtggtgatgtaggtgct	Protospacer
 .**.**  ******.* **************

12. spacer 4.52|1902181|32|LS483459|CRT matches to MN693295 (Marine virus AFVG_25M553, complete genome) position: , mismatch: 7, identity: 0.781

----gaggccggggttatggggtgcggtgaaggttg	CRISPR spacer
tccaga----ggggttatggggtgaggtgaagggtc	Protospacer
    **    ************** ******** *

13. spacer 4.54|1902303|32|LS483459|CRT matches to MN694577 (Marine virus AFVG_250M507, complete genome) position: , mismatch: 7, identity: 0.781

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
gccctgtacaacagcaaggaaggcaagaagct	Protospacer
* * .*  ** * *******************

14. spacer 4.56|1902425|32|LS483459|CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 7, identity: 0.781

caaacgatccaaaccggcatcgacgggttccg	CRISPR spacer
tacacgccgcagaccggcatcgacgggtaccg	Protospacer
.* *** . **.**************** ***

15. spacer 4.59|1902608|32|LS483459|CRT matches to NZ_AP018665 (Sphingobium amiense strain DSM 16289 plasmid pSAMIE_2, complete sequence) position: , mismatch: 7, identity: 0.781

tcttccgcgcctgctccgcaaacgcca--tcgac	CRISPR spacer
ttggccgcggcttctccgcaaacgccaattcg--	Protospacer
*.  ***** ** **************  ***

16. spacer 4.59|1902608|32|LS483459|CRT matches to NZ_CP039694 (Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence) position: , mismatch: 7, identity: 0.781

tcttccgcgcctgctccgcaaacgccatcgac-	CRISPR spacer
ccacccgcgcctggtccgcaaactcca-ggacg	Protospacer
.* .********* ********* ***  ***

17. spacer 4.59|1902608|32|LS483459|CRT matches to NZ_CP053023 (Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence) position: , mismatch: 7, identity: 0.781

tcttccgcgcctgctccgcaaacgcca--tcgac	CRISPR spacer
ttggccgcggcttctccgcaaacgccaattcg--	Protospacer
*.  ***** ** **************  ***

18. spacer 4.59|1902608|32|LS483459|CRT matches to NZ_CP022747 (Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

tcttccgcgcctgctccgcaaacgcca--tcgac	CRISPR spacer
ttggccgcggcttctccgcaaacgccaattcg--	Protospacer
*.  ***** ** **************  ***

19. spacer 4.1|1901570|33|LS483459|PILER-CR,CRISPRCasFinder matches to MH067975 (Arthrobacter sp. strain ANT_H58 plasmid pA58H2, complete sequence) position: , mismatch: 8, identity: 0.758

ggttgtgttcaggtggtcggctgggtcttccag	CRISPR spacer
cgttgtgtgcaggtggtcggttgggtcccggcg	Protospacer
 ******* ***********.******..   *

20. spacer 4.13|1902302|33|LS483459|PILER-CR,CRISPRCasFinder matches to MN694577 (Marine virus AFVG_250M507, complete genome) position: , mismatch: 8, identity: 0.758

ggacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
agccctgtacaacagcaaggaaggcaagaagct	Protospacer
.* * .*  ** * *******************

21. spacer 4.19|1902668|33|LS483459|PILER-CR,CRISPRCasFinder matches to MK279875 (Arthrobacter phage Riverdale, complete genome) position: , mismatch: 8, identity: 0.758

gggcgataagggtgaccctggtggtgtgcgggg	CRISPR spacer
gggcgataagggtgacccgggtggttggactac	Protospacer
****************** ******  *   .

22. spacer 4.19|1902668|33|LS483459|PILER-CR,CRISPRCasFinder matches to MK279876 (Arthrobacter phage Rozby, complete genome) position: , mismatch: 8, identity: 0.758

gggcgataagggtgaccctggtggtgtgcgggg	CRISPR spacer
gggcgataagggtgacccgggtggttggactac	Protospacer
****************** ******  *   .

23. spacer 4.19|1902668|33|LS483459|PILER-CR,CRISPRCasFinder matches to NC_041940 (Arthrobacter phage Glenn, complete genome) position: , mismatch: 8, identity: 0.758

gggcgataagggtgaccctggtggtgtgcgggg	CRISPR spacer
gggcgataagggtgacccgggtggttggactac	Protospacer
****************** ******  *   .

24. spacer 4.27|1903156|33|LS483459|PILER-CR,CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

gggcacgcccggtgaccgactacgccgcgagat	CRISPR spacer
gccgccgcccggtgaccgacgatgccgcgcgct	Protospacer
*    *************** *.****** * *

25. spacer 4.47|1901876|32|LS483459|CRT matches to KT997847 (Uncultured phage_Deep1-GF2-KM23-C739 genomic sequence) position: , mismatch: 8, identity: 0.75

-accaccgtggccttagaggtgatgtaggtgca	CRISPR spacer
cattagc-tggccttagaagttatgtaggtgat	Protospacer
 *..* * **********.** *********

26. spacer 4.53|1902242|32|LS483459|CRT matches to KY555147 (Caulobacter phage Ccr34, complete genome) position: , mismatch: 8, identity: 0.75

gtgcgggatgaactgcgccgcatcccgaagga	CRISPR spacer
gggcgggatgaacagcgccgcctcctcgatca	Protospacer
* *********** ******* ***. .*  *

27. spacer 4.53|1902242|32|LS483459|CRT matches to KY555146 (Caulobacter phage Ccr32, complete genome) position: , mismatch: 8, identity: 0.75

gtgcgggatgaactgcgccgcatcccgaagga	CRISPR spacer
gggcgggatgaacagcgccgcctcctcgatca	Protospacer
* *********** ******* ***. .*  *

28. spacer 4.53|1902242|32|LS483459|CRT matches to JX163858 (Caulobacter phage phiCbK, complete genome) position: , mismatch: 8, identity: 0.75

gtgcgggatgaactgcgccgcatcccgaagga	CRISPR spacer
gggcgggatgaacagcgccgcctcctcgatca	Protospacer
* *********** ******* ***. .*  *

29. spacer 4.54|1902303|32|LS483459|CRT matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

30. spacer 4.54|1902303|32|LS483459|CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

31. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

32. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

33. spacer 4.54|1902303|32|LS483459|CRT matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

34. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

35. spacer 4.54|1902303|32|LS483459|CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

36. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

37. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

38. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

39. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

40. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

41. spacer 4.54|1902303|32|LS483459|CRT matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

42. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

43. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

44. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

45. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

46. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

47. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatc--acccgcaaggaaggcaagaagct	CRISPR spacer
--caaggccgaacccgcaacgaagtcaagaagct	Protospacer
  *. *..*  ******** **** *********

48. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

49. spacer 4.54|1902303|32|LS483459|CRT matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

50. spacer 4.54|1902303|32|LS483459|CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgcgatcacccgcaaggaaggcaagaagct	CRISPR spacer
accggcatcaaccgcacggaaggcaagaactt	Protospacer
. **  **** ***** ************ .*

51. spacer 4.55|1902364|32|LS483459|CRT matches to NZ_AP022623 (Mycobacteroides abscessus strain JCM 30620 plasmid pJCM30620_2) position: , mismatch: 8, identity: 0.75

tccacccaccccttctccaccatctctttaat	CRISPR spacer
atcacccaccccgactccaccatctccgttgt	Protospacer
 .**********  ************. * .*

52. spacer 4.55|1902364|32|LS483459|CRT matches to NC_021278 (Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

tccacccaccccttctccaccatctctttaat	CRISPR spacer
atcacccaccccgactccaccatctccgttgt	Protospacer
 .**********  ************. * .*

53. spacer 4.57|1902486|32|LS483459|CRT matches to NZ_AP022623 (Mycobacteroides abscessus strain JCM 30620 plasmid pJCM30620_2) position: , mismatch: 8, identity: 0.75

tccgcccaccccttctccaccatctccttaat	CRISPR spacer
atcacccaccccgactccaccatctccgttgt	Protospacer
 .*.********  ************* * .*

54. spacer 4.57|1902486|32|LS483459|CRT matches to NC_021278 (Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

tccgcccaccccttctccaccatctccttaat	CRISPR spacer
atcacccaccccgactccaccatctccgttgt	Protospacer
 .*.********  ************* * .*

55. spacer 4.58|1902547|32|LS483459|CRT matches to NZ_CP042264 (Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

cagcgttacggtggccccggtgctgtgtggcc	CRISPR spacer
cagcgttacggtgacgccggtgccggacgatc	Protospacer
*************.* *******.* ..*..*

56. spacer 4.59|1902608|32|LS483459|CRT matches to NZ_CP028971 (Aminobacter sp. MSH1 plasmid pUSP3, complete sequence) position: , mismatch: 8, identity: 0.75

tcttccgcgcctgctccgcaaacgccatcgac	CRISPR spacer
tcatccgcgcctgatccgcaaactgcaggaag	Protospacer
** ********** *********  **  .*

57. spacer 4.60|1902669|32|LS483459|CRT matches to MK279875 (Arthrobacter phage Riverdale, complete genome) position: , mismatch: 8, identity: 0.75

ggcgataagggtgaccctggtggtgtgcgggg	CRISPR spacer
ggcgataagggtgacccgggtggttggactac	Protospacer
***************** ******  *   .

58. spacer 4.60|1902669|32|LS483459|CRT matches to MK279876 (Arthrobacter phage Rozby, complete genome) position: , mismatch: 8, identity: 0.75

ggcgataagggtgaccctggtggtgtgcgggg	CRISPR spacer
ggcgataagggtgacccgggtggttggactac	Protospacer
***************** ******  *   .

59. spacer 4.60|1902669|32|LS483459|CRT matches to NC_041940 (Arthrobacter phage Glenn, complete genome) position: , mismatch: 8, identity: 0.75

ggcgataagggtgaccctggtggtgtgcgggg	CRISPR spacer
ggcgataagggtgacccgggtggttggactac	Protospacer
***************** ******  *   .

60. spacer 4.66|1903035|32|LS483459|CRT matches to MH807815 (Dickeya phage Luksen, complete genome) position: , mismatch: 8, identity: 0.75

gctaaaagctttaaggagtccatcggcaagat	CRISPR spacer
gataagagccttaaggagtccatcggggcgta	Protospacer
* ***.***.**************** . *

61. spacer 4.68|1903157|32|LS483459|CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggcacgcccggtgaccgactacgccgcgagat	CRISPR spacer
ccgccgcccggtgaccgacgatgccgcgcgct	Protospacer
    *************** *.****** * *

62. spacer 4.68|1903157|32|LS483459|CRT matches to NZ_CP023524 (Burkholderia gladioli pv. gladioli strain FDAARGOS_389 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ggcacgcccggtgaccgactacgccgcgagat	CRISPR spacer
cgcgaacccggcgaccgactgcgccgcgacgt	Protospacer
 **. .*****.********.******** .*

63. spacer 4.69|1903218|32|LS483459|CRT matches to KX388536 (Agrobacterium tumefaciens strain Chry5 plasmid pTiChry5, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

64. spacer 4.69|1903218|32|LS483459|CRT matches to KY000035 (Agrobacterium sp. strain EHA101 plasmid pTi_EHA101, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

65. spacer 4.69|1903218|32|LS483459|CRT matches to KY000037 (Agrobacterium sp. strain LBA4404 plasmid pTi_LBA4404, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

66. spacer 4.69|1903218|32|LS483459|CRT matches to NZ_CP026926 (Agrobacterium tumefaciens strain 1D1609 plasmid pTi1D1609, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

67. spacer 4.69|1903218|32|LS483459|CRT matches to NZ_CP011249 (Agrobacterium tumefaciens strain Ach5 plasmid pTi, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

68. spacer 4.69|1903218|32|LS483459|CRT matches to NC_010929 (Agrobacterium tumefaciens Ti plasmid pTiBo542, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

69. spacer 4.69|1903218|32|LS483459|CRT matches to NC_002377 (Agrobacterium tumefaciens plasmid Ti, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

70. spacer 4.69|1903218|32|LS483459|CRT matches to NZ_CP032920 (Agrobacterium tumefaciens strain 15955 plasmid pTi15955, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

71. spacer 4.69|1903218|32|LS483459|CRT matches to NZ_CP033030 (Agrobacterium tumefaciens strain A6 plasmid pTiA6, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

72. spacer 4.69|1903218|32|LS483459|CRT matches to NZ_KY000030 (Agrobacterium genomosp. 1 strain CFBP5767 plasmid pTi_CFBP5767, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

73. spacer 4.69|1903218|32|LS483459|CRT matches to NZ_KY000074 (Agrobacterium larrymoorei strain CFBP5481 plasmid pTi_CFBP5481, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

74. spacer 4.69|1903218|32|LS483459|CRT matches to NZ_KY000061 (Agrobacterium tumefaciens strain CFBP2413 plasmid pTi_CFBP2413, complete sequence) position: , mismatch: 8, identity: 0.75

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
agttcgtccgcgcttggcgatgttaacgagat	Protospacer
* * *   ************** *.******

75. spacer 4.75|1903585|32|LS483459|CRT matches to MT251347 (Klebsiella phage LASTA, complete genome) position: , mismatch: 8, identity: 0.75

ccgatcgagaagtgcggcagctcttcggcgga	CRISPR spacer
tcgaagaagaacttcggcagctcttcggcgtc	Protospacer
.***  .**** * ****************

76. spacer 4.75|1903585|32|LS483459|CRT matches to MT251348 (Klebsiella phage SJM3, complete genome) position: , mismatch: 8, identity: 0.75

ccgatcgagaagtgcggcagctcttcggcgga	CRISPR spacer
tcgaagaagaacttcggcagctcttcggcgtc	Protospacer
.***  .**** * ****************

77. spacer 4.76|1903646|32|LS483459|CRT matches to NC_015427 (Clostridium botulinum BKT015925 plasmid p4BKT015925, complete sequence) position: , mismatch: 8, identity: 0.75

ctttcgat--ctgccatgtcatcacctccctagg	CRISPR spacer
--tctaattactgccatgtcagcacctctctagc	Protospacer
  *...**  *********** ******.****

78. spacer 4.78|1903768|32|LS483459|CRT matches to NZ_CP044217 (Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttgagtgcggcggggtggccagtgtcag	CRISPR spacer
gcccttgtgcgcggcggggtggccagtgtgct	Protospacer
*. .*** *.*******************

79. spacer 4.7|1901936|33|LS483459|PILER-CR,CRISPRCasFinder matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 9, identity: 0.727

gggcaaggggtgggtggtgacggcggacggtcg	CRISPR spacer
gggcagggtgtgggtggtgacggcgtgggtctc	Protospacer
*****.** **************** . * ..

80. spacer 4.10|1902119|33|LS483459|PILER-CR,CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.727

gtagcggcctgccttgtcctcgcgggcttgctc	CRISPR spacer
gacgcggccggccttgtcctcgggggcggcgtg	Protospacer
*  ****** ************ ****    *

81. spacer 4.14|1902363|33|LS483459|PILER-CR,CRISPRCasFinder matches to NC_021278 (Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.727

gtccacccaccccttctccaccatctctttaat	CRISPR spacer
catcacccaccccgactccaccatctccgttgt	Protospacer
  .**********  ************. * .*

82. spacer 4.14|1902363|33|LS483459|PILER-CR,CRISPRCasFinder matches to NZ_AP022623 (Mycobacteroides abscessus strain JCM 30620 plasmid pJCM30620_2) position: , mismatch: 9, identity: 0.727

gtccacccaccccttctccaccatctctttaat	CRISPR spacer
catcacccaccccgactccaccatctccgttgt	Protospacer
  .**********  ************. * .*

83. spacer 4.19|1902668|33|LS483459|PILER-CR,CRISPRCasFinder matches to MF140400 (Arthrobacter phage Canowicakte, complete genome) position: , mismatch: 9, identity: 0.727

gggcgataagggtgaccctggtggtgtgcgggg---	CRISPR spacer
gggcgacaagggcgaccctggtgg---atggaccac	Protospacer
******.*****.***********   ..**.

84. spacer 4.19|1902668|33|LS483459|PILER-CR,CRISPRCasFinder matches to KX621004 (Arthrobacter phage Suppi, complete genome) position: , mismatch: 9, identity: 0.727

gggcgataagggtgaccctggtggtgtgcgggg---	CRISPR spacer
gggcgacaagggcgaccctggtgg---atggaccac	Protospacer
******.*****.***********   ..**.

85. spacer 4.19|1902668|33|LS483459|PILER-CR,CRISPRCasFinder matches to MK279886 (Arthrobacter phage TattModd, complete genome) position: , mismatch: 9, identity: 0.727

gggcgataagggtgaccctggtggtgtgcgggg	CRISPR spacer
gggcgacaagggtgaccccggtggattcactgc	Protospacer
******.***********.*****  *    *

86. spacer 4.25|1903034|33|LS483459|PILER-CR,CRISPRCasFinder matches to MH807815 (Dickeya phage Luksen, complete genome) position: , mismatch: 9, identity: 0.727

ggctaaaagctttaaggagtccatcggcaagat	CRISPR spacer
tgataagagccttaaggagtccatcggggcgta	Protospacer
 * ***.***.**************** . *

87. spacer 4.32|1903461|34|LS483459|PILER-CR,CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

aggagaaggcgctagcggaggcgcgtaaggctct	CRISPR spacer
aatcgttgcagctggcggaggcgcgcaaggctct	Protospacer
*.  *  *  ***.***********.********

88. spacer 4.37|1903767|33|LS483459|PILER-CR,CRISPRCasFinder matches to NZ_CP044217 (Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

ggtgtttgagtgcggcggggtggccagtgtcag	CRISPR spacer
cgcccttgtgcgcggcggggtggccagtgtgct	Protospacer
 *. .*** *.*******************

89. spacer 4.45|1901754|32|LS483459|CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 9, identity: 0.719

cgccctaatcttctcctccaccgagcttgtag	CRISPR spacer
ccagaggaccttctcctcagccgagcttgtag	Protospacer
*     .*.********* .************

90. spacer 4.48|1901937|32|LS483459|CRT matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 9, identity: 0.719

ggcaaggggtgggtggtgacggcggacggtcg	CRISPR spacer
ggcagggtgtgggtggtgacggcgtgggtctc	Protospacer
****.** **************** . * ..

91. spacer 4.51|1902120|32|LS483459|CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tagcggcctgccttgtcctcgcgggcttgctc	CRISPR spacer
acgcggccggccttgtcctcgggggcggcgtg	Protospacer
  ****** ************ ****    *

92. spacer 4.53|1902242|32|LS483459|CRT matches to NZ_CP039640 (Azospirillum sp. TSH100 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gtgcgggatgaactgcgccgcatcccgaagga	CRISPR spacer
ttctgccgcgacctgcgccgcatcctgaagga	Protospacer
 * .*  ..** *************.******

93. spacer 4.60|1902669|32|LS483459|CRT matches to MF140400 (Arthrobacter phage Canowicakte, complete genome) position: , mismatch: 9, identity: 0.719

ggcgataagggtgaccctggtggtgtgcgggg---	CRISPR spacer
ggcgacaagggcgaccctggtgg---atggaccac	Protospacer
*****.*****.***********   ..**.

94. spacer 4.60|1902669|32|LS483459|CRT matches to KX621004 (Arthrobacter phage Suppi, complete genome) position: , mismatch: 9, identity: 0.719

ggcgataagggtgaccctggtggtgtgcgggg---	CRISPR spacer
ggcgacaagggcgaccctggtgg---atggaccac	Protospacer
*****.*****.***********   ..**.

95. spacer 4.60|1902669|32|LS483459|CRT matches to MK279886 (Arthrobacter phage TattModd, complete genome) position: , mismatch: 9, identity: 0.719

ggcgataagggtgaccctggtggtgtgcgggg	CRISPR spacer
ggcgacaagggtgaccccggtggattcactgc	Protospacer
*****.***********.*****  *    *

96. spacer 4.69|1903218|32|LS483459|CRT matches to NZ_CP010863 (Marinovum algicola DG 898 plasmid pMaD8, complete sequence) position: , mismatch: 9, identity: 0.719

actactgacgcgcttggcgatggtgacgagaa	CRISPR spacer
gcgcagcacgcgcttggcgacggtgccgagga	Protospacer
.*     *************.**** ****.*

97. spacer 4.73|1903462|33|LS483459|CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.727

ggagaaggcgctagcggaggcgcgtaaggctct	CRISPR spacer
atcgttgcagctggcggaggcgcgcaaggctct	Protospacer
.  *  *  ***.***********.********

98. spacer 4.75|1903585|32|LS483459|CRT matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 9, identity: 0.719

ccgatcgagaagtgcggcagctcttcggcgga	CRISPR spacer
gcgccgttgaagtgcggcacctcttccgcggg	Protospacer
 ** .   *********** ****** ****.

99. spacer 4.76|1903646|32|LS483459|CRT matches to NZ_CP046574 (Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
cccacgatccgccaggtcatcacctccggtcg	Protospacer
*.. *****.**** ************    *

100. spacer 4.76|1903646|32|LS483459|CRT matches to LN610574 (Pseudomonas phage vB_PaeP_PAO1_Ab05, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

101. spacer 4.76|1903646|32|LS483459|CRT matches to NC_005045 (Pseudomonas phage phiKMV, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

102. spacer 4.76|1903646|32|LS483459|CRT matches to AJ505558 (Bacteriophage phiKMV complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

103. spacer 4.76|1903646|32|LS483459|CRT matches to KC969441 (UNVERIFIED: Pseudomonas phage MBL, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

104. spacer 4.76|1903646|32|LS483459|CRT matches to MN692672 (Pseudomonas phage vB_PaeP_Lx18, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

105. spacer 4.76|1903646|32|LS483459|CRT matches to MN615699 (Pseudomonas phage vB_PaeP_SPCG, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

106. spacer 4.76|1903646|32|LS483459|CRT matches to MN615698 (Pseudomonas phage vB_PaeP_SPCB, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

107. spacer 4.76|1903646|32|LS483459|CRT matches to NC_009935 (Pseudomonas phage LKD16, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

108. spacer 4.76|1903646|32|LS483459|CRT matches to MN553588 (UNVERIFIED: Pseudomonas phage phiKMVC5-12, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

109. spacer 4.76|1903646|32|LS483459|CRT matches to NC_047852 (Pseudomonas phage phiNFS, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

110. spacer 4.76|1903646|32|LS483459|CRT matches to NC_047953 (Pseudomonas phage vB_PaeP_130_113, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatgcgt	Protospacer
.*.*****  **************** .  *

111. spacer 4.76|1903646|32|LS483459|CRT matches to MN871483 (UNVERIFIED: Pseudomonas phage PaSz-8_45_42k, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

112. spacer 4.76|1903646|32|LS483459|CRT matches to LN610580 (Pseudomonas phage vB_PaeP_PAO1_1-15pyo, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

113. spacer 4.76|1903646|32|LS483459|CRT matches to EU236438 (Pseudomonas phage PT2, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

114. spacer 4.76|1903646|32|LS483459|CRT matches to MN553585 (UNVERIFIED: Pseudomonas phage 4phiC20-1 clone 9, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

115. spacer 4.76|1903646|32|LS483459|CRT matches to KR054031 (Pseudomonas phage DL62, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

116. spacer 4.76|1903646|32|LS483459|CRT matches to MN553589 (UNVERIFIED: Pseudomonas phage phiKMVC5(121) clone 13, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

117. spacer 4.76|1903646|32|LS483459|CRT matches to AM910651 (Pseudomonas phage LUZ19, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

118. spacer 4.76|1903646|32|LS483459|CRT matches to NC_011105 (Pseudomonas phage PT5, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

119. spacer 4.76|1903646|32|LS483459|CRT matches to MN602045 (Pseudomonas phage vB_PaeP_ASP23, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

120. spacer 4.76|1903646|32|LS483459|CRT matches to KX711710 (Pseudomonas phage vB_Pae-TbilisiM32, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

121. spacer 4.76|1903646|32|LS483459|CRT matches to MN901924 (Pseudomonas phage vB_PaeP_PE3, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

122. spacer 4.76|1903646|32|LS483459|CRT matches to MN553587 (UNVERIFIED: Pseudomonas phage phiKMVC5(121) clone 4a, complete genome) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

123. spacer 4.76|1903646|32|LS483459|CRT matches to AM265638 (Bacteriophage LKD16 complete genome, specific host Pseudomonas aeruginosa) position: , mismatch: 9, identity: 0.719

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
ttctcgataagccatgtcatcacctcatacgt	Protospacer
.*.*****  **************** .  *

124. spacer 4.30|1903339|33|LS483459|PILER-CR,CRISPRCasFinder matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 10, identity: 0.697

tggaacgcaaccgggataaaaacccgccacggt	CRISPR spacer
tcaccggcaaccgggataaaaaaccgacacctg	Protospacer
* .   **************** *** ***

125. spacer 4.32|1903461|34|LS483459|PILER-CR,CRISPRCasFinder matches to NZ_CP035035 (Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

aggagaaggcgctagcggaggcgcgtaaggctct	CRISPR spacer
aggagaaggcgctggctgaggcgcgaacaaagtc	Protospacer
*************.** ******** * ..  ..

126. spacer 4.42|1901571|32|LS483459|CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gttgtgttcaggtggtcggctgggtcttccag	CRISPR spacer
aagcggggcaggtggtcggctgcctcttccac	Protospacer
.    *  **************  *******

127. spacer 4.52|1902181|32|LS483459|CRT matches to MF185717 (Mycobacterium phage AlleyCat, complete genome) position: , mismatch: 10, identity: 0.688

gaggccggggttatggggtgcggtgaaggttg	CRISPR spacer
ctcgccggggttagggggtgcggcgagactaa	Protospacer
   ********** *********.**.. * .

128. spacer 4.55|1902364|32|LS483459|CRT matches to MH992131 (UNVERIFIED: Thermus phage TSP4, complete genome) position: , mismatch: 10, identity: 0.688

tccacccaccccttctccaccatctctttaat	CRISPR spacer
gccacccagcccttctccatcatcagggccag	Protospacer
 ******* **********.****    . *

129. spacer 4.59|1902608|32|LS483459|CRT matches to NZ_CP049031 (Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence) position: , mismatch: 10, identity: 0.688

tcttccgcgcctgctccgcaaacgccatcgac	CRISPR spacer
ggaaccgcgcctgcaccgcaaacgtcacgttc	Protospacer
    ********** *********.**.   *

130. spacer 4.61|1902730|32|LS483459|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 10, identity: 0.688

gtatctagcccgtcgcgcaaccccttgaaagt	CRISPR spacer
atatcgagcccgtcgcgcaaaccctgagccac	Protospacer
.**** ************** **** ..  ..

131. spacer 4.61|1902730|32|LS483459|CRT matches to NZ_AP017660 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_6) position: , mismatch: 10, identity: 0.688

gtatctagcccgtcgcgcaaccccttgaaagt	CRISPR spacer
tcatcaagctcgtcgcgcaacccctccagcac	Protospacer
 .*** ***.***************. *. ..

132. spacer 4.61|1902730|32|LS483459|CRT matches to NZ_AP018667 (Sphingobium amiense strain DSM 16289 plasmid pSAMIE_4, complete sequence) position: , mismatch: 10, identity: 0.688

gtatctagcccgtcgcgcaaccccttgaaagt	CRISPR spacer
tcatcaagctcgtcgcgcaacccctccagcac	Protospacer
 .*** ***.***************. *. ..

133. spacer 4.61|1902730|32|LS483459|CRT matches to NZ_CP033227 (Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence) position: , mismatch: 10, identity: 0.688

gtatctagcccgtcgcgcaaccccttgaaagt	CRISPR spacer
tcatcaagctcgtcgcgcaacccctccagcac	Protospacer
 .*** ***.***************. *. ..

134. spacer 4.71|1903340|32|LS483459|CRT matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 10, identity: 0.688

ggaacgcaaccgggataaaaacccgccacggt	CRISPR spacer
caccggcaaccgggataaaaaaccgacacctg	Protospacer
 .   **************** *** ***

135. spacer 4.73|1903462|33|LS483459|CRT matches to NZ_CP035035 (Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

ggagaaggcgctagcggaggcgcgtaaggctct	CRISPR spacer
ggagaaggcgctggctgaggcgcgaacaaagtc	Protospacer
************.** ******** * ..  ..

136. spacer 4.76|1903646|32|LS483459|CRT matches to KU878088 (Bacillus phage AR9, complete genome) position: , mismatch: 10, identity: 0.688

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
tcttggatctgccatttcatcacctttttcta	Protospacer
..** ********** *********...*  .

137. spacer 4.76|1903646|32|LS483459|CRT matches to MF360957 (Bacillus virus PBS1, complete genome) position: , mismatch: 10, identity: 0.688

ctttcgatctgccatgtcatcacctccctagg	CRISPR spacer
tcttggatctgccatttcatcacctttttcta	Protospacer
..** ********** *********...*  .

138. spacer 4.20|1902729|33|LS483459|PILER-CR,CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 11, identity: 0.667

ggtatctagcccgtcgcgcaaccccttgaaagt	CRISPR spacer
catatcgagcccgtcgcgcaaaccctgagccac	Protospacer
 .**** ************** **** ..  ..

139. spacer 4.59|1902608|32|LS483459|CRT matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 11, identity: 0.656

tcttccgcgcctgctccgcaaacgccatcgac	CRISPR spacer
cgcggttcgcctgctccgcgaactccatcggg	Protospacer
. .  . ************.*** ******.

140. spacer 4.65|1902974|32|LS483459|CRT matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 11, identity: 0.656

tttttcggtgaaggtgaaggttttggagttgg	CRISPR spacer
ggagccggtgaaggggaaggttttcgagcgca	Protospacer
    .********* ********* ***.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

296852 : 363162

Staphylococcus_phage(30.77%)

tRNA,transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI18854.1\|296852_299783_+\|tRNA	leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	1.3e-218	44.8
SQI18855.1\|300386_300893_-	hypothetical membrane protein	NA	NA	NA	NA
SQI18856.1\|300971_301898_-	universal stress protein	NA	NA	NA	NA
SQI18861.1\|301923_302430_-	MarR family transcriptional regulator	NA	NA	NA	NA
SQI18862.1\|302561_303653_-	myo-inositol-1-phosphate synthase	A0A0H4IPK5	Stenotrophomonas_phage	2.3e-64	38.0
SQI18864.1\|304177_306883_+	penicillin-binding protein 1	NA	NA	NA	NA
SQI18866.1\|306863_308489_+	hypothetical membrane protein	NA	NA	NA	NA
SQI18867.1\|308481_308664_+	hypothetical membrane protein	NA	NA	NA	NA
SQI18868.1\|308806_309103_+	30S ribosomal protein S6	NA	NA	NA	NA
SQI18870.1\|309241_309844_+	single-stranded DNA-binding protein	A0A2H4JEL4	uncultured_Caudovirales_phage	9.3e-44	49.0
SQI18871.1\|309926_310379_+	50S ribosomal protein L9	NA	NA	NA	NA
SQI18872.1\|311300_312965_-	flavin-binding monooxygenase	NA	NA	NA	NA
SQI18874.1\|313469_315005_+	replicative DNA helicase	O80281	Escherichia_phage	3.6e-84	41.4
SQI18875.1\|315134_315635_-	MarR family transcriptional regulator	NA	NA	NA	NA
SQI18877.1\|315673_316324_+	camphor resistance protein CrcB	NA	NA	NA	NA
SQI18878.1\|316320_316770_+	chromosome condensation membrane protein	NA	NA	NA	NA
SQI18880.1\|316776_317280_-	Uncharacterised protein	NA	NA	NA	NA
SQI18902.1\|317411_317783_+	thioredoxin	V9SJ74	Achromobacter_phage	1.9e-10	30.5
SQI18904.1\|317874_318975_-	alcohol dehydrogenase	L7RC95	Acanthamoeba_polyphaga_moumouvirus	8.2e-62	37.6
SQI18905.1\|319151_319727_+	cholesterol esterase	NA	NA	NA	NA
SQI18907.1\|319716_320781_+	putative secreted protein	NA	NA	NA	NA
SQI18908.1\|320929_321730_+	rod-shaped morphology protein	NA	NA	NA	NA
SQI18909.1\|321799_323482_+	major facilitator superfamily permease	A0A0M3UL24	Mycobacterium_phage	1.3e-18	26.7
SQI18911.1\|323579_324338_-	short chain dehydrogenase	NA	NA	NA	NA
SQI18912.1\|324373_325786_-	decaprenylphosphoryl-beta-D-ribose 2-epimerase subunit	NA	NA	NA	NA
SQI18913.1\|325917_326244_-	Uncharacterised protein	NA	NA	NA	NA
SQI18914.1\|326268_327042_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
SQI18916.1\|327066_328572_+	Uncharacterised protein	NA	NA	NA	NA
SQI18917.1\|329114_329789_-	GtrA-like integral membrane protein	NA	NA	NA	NA
SQI18920.1\|329754_330465_-	hypothetical membrane protein	NA	NA	NA	NA
SQI18921.1\|330614_331523_-	glycosyltransferase	NA	NA	NA	NA
SQI18924.1\|331526_333359_-	long-chain-fatty-acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	3.7e-27	27.8
SQI18926.1\|333681_334827_-	Uncharacterised protein	NA	NA	NA	NA
SQI18929.1\|335389_335716_-\|transposase	transposase for insertion sequence element	NA	NA	NA	NA
SQI18931.1\|336681_337470_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-09	26.6
SQI18932.1\|337581_338469_-	ABC transporter permease	NA	NA	NA	NA
SQI18933.1\|338816_340184_+	aminotransferase	NA	NA	NA	NA
SQI18934.1\|340319_341093_+	regulatory protein	NA	NA	NA	NA
SQI18935.1\|341164_342166_-	quinone oxidoreductase	NA	NA	NA	NA
SQI18936.1\|342871_345946_+	cell surface protein	NA	NA	NA	NA
SQI18955.1\|345976_346873_-\|transposase	transposase	U5P429	Shigella_phage	2.9e-25	31.1
SQI18958.1\|346869_347169_-\|transposase	transposase	NA	NA	NA	NA
SQI18961.1\|347547_348279_-	ABC transporter inner membrane protein	NA	NA	NA	NA
SQI18964.1\|348275_349064_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.5e-20	35.8
SQI18966.1\|349189_349825_-	membrane-associated phospholipid phosphatase	NA	NA	NA	NA
SQI18968.1\|350024_351419_+	two-component system sensor kinase	NA	NA	NA	NA
SQI18971.1\|351415_352087_+	putative transcriptional regulatory protein	NA	NA	NA	NA
SQI18973.1\|352267_353164_-\|transposase	transposase	U5P429	Shigella_phage	2.9e-25	31.1
SQI18975.1\|353160_353460_-\|transposase	transposase	NA	NA	NA	NA
SQI18977.1\|353696_357131_+	cell surface protein	NA	NA	NA	NA
SQI18978.1\|357183_357951_-	Uncharacterised protein	NA	NA	NA	NA
SQI18980.1\|357955_359152_-	aminotransferase	A0A1X7QHI1	Faustovirus	6.4e-12	29.9
SQI18983.1\|360838_361942_+	membrane protein	NA	NA	NA	NA
SQI18985.1\|361938_363162_+\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_2

595217 : 643262

Brazilian_cedratvirus(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI19351.1\|595217_596357_+\|transposase	transposase IS1249a	NA	NA	NA	NA
SQI19353.1\|596503_597289_-	putative secreted protein	NA	NA	NA	NA
SQI19354.1\|597245_597347_-	putative secreted protein	NA	NA	NA	NA
SQI19355.1\|597553_598495_-	Sortase (surface protein transpeptidase)	NA	NA	NA	NA
SQI19356.1\|598570_598768_-	Uncharacterised protein	NA	NA	NA	NA
SQI19357.1\|599256_599562_+	30S ribosomal protein S10	NA	NA	NA	NA
SQI19358.1\|599608_600265_+	50S ribosomal protein L3	NA	NA	NA	NA
SQI19359.1\|600261_600915_+	50S ribosomal protein L4	NA	NA	NA	NA
SQI19360.1\|600911_601217_+	50S ribosomal protein L23	NA	NA	NA	NA
SQI19361.1\|601256_602099_+	50S ribosomal protein L2	NA	NA	NA	NA
SQI19362.1\|602115_602394_+	30S ribosomal protein S19	NA	NA	NA	NA
SQI19363.1\|602396_602759_+	50S ribosomal protein L22	NA	NA	NA	NA
SQI19364.1\|602758_603502_+	30S ribosomal protein S3	NA	NA	NA	NA
SQI19365.1\|603507_603924_+	50S ribosomal protein L16	NA	NA	NA	NA
SQI19366.1\|603923_604157_+	50S ribosomal protein L29	NA	NA	NA	NA
SQI19367.1\|604153_604447_+	30S ribosomal protein S17	NA	NA	NA	NA
SQI19368.1\|604534_605206_-\|transposase	transposase IS3515	A0A1B1P773	Bacillus_phage	1.4e-48	45.0
SQI19373.1\|605394_605715_-\|transposase	transposase IS3517	NA	NA	NA	NA
SQI19376.1\|606253_606478_-	isochorismatase	NA	NA	NA	NA
SQI19377.1\|606477_609996_-	2,3-dihydroxybenzoate-AMP ligase	NA	NA	NA	NA
SQI19378.1\|610033_610876_-	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	NA	NA	NA	NA
SQI19379.1\|610905_611781_-	iron ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.3e-14	28.1
SQI19380.1\|611777_612881_-	iron ABC transport system, permease	NA	NA	NA	NA
SQI19381.1\|612880_613906_-	iron ABC transport system, permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.0e-13	25.5
SQI19382.1\|613902_614697_-	Lysine N-acyltransferase mbtK	NA	NA	NA	NA
SQI19384.1\|614859_616170_+	L-lysine 6-monooxygenase	NA	NA	NA	NA
SQI19386.1\|616343_617834_+	non-ribosomal peptide synthetase component	NA	NA	NA	NA
SQI19387.1\|617929_618937_+	iron ABC transport system, solute- binding protein	NA	NA	NA	NA
SQI19405.1\|619065_626439_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	3.6e-28	25.9
SQI19406.1\|626496_628554_+	iron utilization protein	NA	NA	NA	NA
SQI19407.1\|628873_629830_+	iron ABC transport system, solute-binding protein	NA	NA	NA	NA
SQI19408.1\|629881_630898_+	iron ABC transport system, permease	A0A2H4IY97	uncultured_Caudovirales_phage	9.3e-12	24.8
SQI19409.1\|630894_631956_+	iron ABC transport system, permease	NA	NA	NA	NA
SQI19410.1\|631952_632762_+	iron ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	3.2e-15	30.6
SQI19411.1\|632771_633695_-	iron utilization protein	NA	NA	NA	NA
SQI19412.1\|633831_634176_-	Uncharacterised protein	NA	NA	NA	NA
SQI19413.1\|634773_635145_+	50S ribosomal protein L14	NA	NA	NA	NA
SQI19414.1\|635145_635460_+	50S ribosomal protein L24	NA	NA	NA	NA
SQI19415.1\|635462_636032_+	50S ribosomal protein L5	NA	NA	NA	NA
SQI19416.1\|636203_636638_-	Uncharacterised protein	NA	NA	NA	NA
SQI19417.1\|636974_637520_+	Uncharacterised protein	NA	NA	NA	NA
SQI19418.1\|637804_638203_+	30S ribosomal protein S8	NA	NA	NA	NA
SQI19419.1\|638221_638758_+	50S ribosomal protein L6	NA	NA	NA	NA
SQI19424.1\|638757_639162_+	50S ribosomal protein L18	NA	NA	NA	NA
SQI19426.1\|639202_639853_+	30S ribosomal protein S5	NA	NA	NA	NA
SQI19428.1\|639856_640042_+	50S ribosomal protein L30	NA	NA	NA	NA
SQI19429.1\|640044_640494_+	50S ribosomal protein L15	NA	NA	NA	NA
SQI19430.1\|640646_640868_-\|transposase	transposase IS3503g	NA	NA	NA	NA
SQI19431.1\|641105_642344_-\|transposase	transposase IS3506a	A0A220NQR7	Corynebacterium_phage	1.6e-82	41.9
SQI19432.1\|642428_643262_-\|transposase	transposase IS3503b	NA	NA	NA	NA

DBSCAN-SWA_3

847802 : 872422

Staphylococcus_phage(50.0%)

integrase,transposase,holin

attL 865111:865151|attR 872526:872566

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI20231.1\|847802_848942_-\|transposase	transposase IS1249a	NA	NA	NA	NA
SQI20232.1\|849199_850336_-\|transposase	transposase IS3509a	NA	NA	NA	NA
SQI20233.1\|850694_851834_-	major facilitator superfamily permease	NA	NA	NA	NA
SQI20234.1\|852348_852504_-	Uncharacterised protein	NA	NA	NA	NA
SQI20235.1\|852775_853759_+	molybdenum cofactor biosynthesis protein A	NA	NA	NA	NA
SQI20236.1\|854282_854432_-	Uncharacterised protein	NA	NA	NA	NA
SQI20237.1\|854545_855310_+	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
SQI20238.1\|855306_856545_+	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
SQI20239.1\|856541_857012_+	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
SQI20240.1\|857086_857602_-	molybdopterin biosynthesis protein CB	NA	NA	NA	NA
SQI20241.1\|857645_858719_-	molybdate ABC transport system, ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-12	32.0
SQI20242.1\|858715_859543_-	molybdate ABC transport system, permease	NA	NA	NA	NA
SQI20243.1\|859511_860273_-	molybdate ABC transport system, solute-binding protein	NA	NA	NA	NA
SQI20244.1\|860666_860933_+\|holin	choline-glycine betaine transporter	NA	NA	NA	NA
SQI20245.1\|861665_862367_-\|transposase	transposase IS1513a	W5R8L2	Staphylococcus_phage	1.3e-23	36.7
SQI20246.1\|864184_864370_+	pyridoxine 5'-phosphate oxidase	NA	NA	NA	NA
865111:865151	attL	NA	NA	NA	NA
SQI20247.1\|865457_866696_-\|transposase	transposase IS3506a	A0A220NQR7	Corynebacterium_phage	1.6e-82	41.9
SQI20248.1\|866918_867323_-	MerR family transcriptional regulator	NA	NA	NA	NA
SQI20249.1\|867492_869052_+	sulfate permease	A0A2H4J153	uncultured_Caudovirales_phage	4.5e-114	50.9
SQI20250.1\|869221_870256_-	Uncharacterised protein	NA	NA	NA	NA
SQI20251.1\|871326_871689_-	Bacterial mobilisation protein (MobC)	NA	NA	NA	NA
SQI20252.1\|871891_872422_+\|integrase	integrase	NA	NA	NA	NA
872526:872566	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1286452 : 1326595

Vibrio_phage(28.57%)

tRNA,integrase,holin,protease

attL 1310849:1310866|attR 1322235:1322252

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI20669.1\|1286452_1289701_+\|tRNA	lysyl-tRNA synthetase	A0A2K9KZX5	Tupanvirus	1.7e-59	33.0
SQI20670.1\|1289669_1290965_-	Esterase	NA	NA	NA	NA
SQI20671.1\|1291079_1292519_+	signal recognition particle receptor	D6PHS7	uncultured_phage	2.0e-12	35.3
SQI20672.1\|1292722_1294105_+	ammonium transporter	NA	NA	NA	NA
SQI20673.1\|1294101_1294440_+	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQI20674.1\|1294555_1296139_+	signal recognition particle protein	NA	NA	NA	NA
SQI20675.1\|1296370_1296895_+	30S ribosomal protein S16	NA	NA	NA	NA
SQI20676.1\|1297145_1298489_+	glutamate dehydrogenase	NA	NA	NA	NA
SQI20677.1\|1298492_1299056_+	16S rRNA-processing protein RimM	NA	NA	NA	NA
SQI20678.1\|1299058_1299907_+\|tRNA	tRNA (guanine-N(1)-)-methyltransferase	NA	NA	NA	NA
SQI20679.1\|1299910_1301695_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	3.4e-57	28.4
SQI20680.1\|1301939_1304141_+\|holin	high-affinity choline transport protein	A0A2I7QNT1	Vibrio_phage	1.4e-17	26.7
SQI20681.1\|1304194_1305766_+	betaine aldehyde dehydrogenase	NA	NA	NA	NA
SQI20682.1\|1305772_1307950_+\|holin	high-affinity choline transport protein	A0A2I7QNT1	Vibrio_phage	4.5e-19	26.6
SQI20683.1\|1307960_1310240_+	transcriptional accessory protein	NA	NA	NA	NA
SQI20684.1\|1310353_1310695_+	50S ribosomal protein L19	NA	NA	NA	NA
SQI20685.1\|1310813_1311578_+	Signal peptidase I	NA	NA	NA	NA
1310849:1310866	attL	NA	NA	NA	NA
SQI20686.1\|1311643_1312225_+	ribonuclease HII	R4THQ2	Phaeocystis_globosa_virus	1.3e-13	30.0
SQI20687.1\|1312229_1312535_+	putative excinuclease ATPase subunit	NA	NA	NA	NA
SQI20688.1\|1312709_1313072_+	putative endonuclease	NA	NA	NA	NA
SQI20689.1\|1313075_1314617_+\|protease	ATP-dependent protease	NA	NA	NA	NA
SQI20690.1\|1314613_1315804_+	DNA processing protein	NA	NA	NA	NA
SQI20691.1\|1315821_1316727_+\|integrase	integrase/recombinase	A0A1I9SC88	Mycobacterium_phage	5.4e-19	31.3
SQI20692.1\|1316701_1317097_-	membrane metalloendopeptidase	NA	NA	NA	NA
SQI20700.1\|1317757_1318591_+	30S ribosomal protein S2	NA	NA	NA	NA
SQI20704.1\|1318762_1319581_+	elongation factor Ts	NA	NA	NA	NA
SQI20705.1\|1319720_1320461_+	uridylate kinase	NA	NA	NA	NA
SQI20706.1\|1320522_1321080_+	ribosome recycling factor	NA	NA	NA	NA
SQI20707.1\|1321249_1321978_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
SQI20708.1\|1321978_1322383_-	hypothetical membrane protein	NA	NA	NA	NA
1322235:1322252	attR	NA	NA	NA	NA
SQI20709.1\|1322521_1323559_+	ribosomal RNA large subunit methyltransferase N	NA	NA	NA	NA
SQI20710.1\|1323630_1324032_-	hypothetical membrane protein	NA	NA	NA	NA
SQI20711.1\|1324184_1325366_+	1-deoxy-D-xylulose 5-phosphate reductoisomerase	NA	NA	NA	NA
SQI20712.1\|1325350_1326595_+\|protease	membrane-associated Zn-dependent metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_5

1879081 : 1934620

Bacillus_phage(20.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI23900.1\|1879081_1880221_+\|transposase	transposase IS3507	NA	NA	NA	NA
SQI23901.1\|1880535_1881675_+\|transposase	transposase IS1249a	NA	NA	NA	NA
SQI23902.1\|1882034_1882583_-	Protein of uncharacterised function (DUF3052)	NA	NA	NA	NA
SQI23903.1\|1882777_1885534_+	pyruvate dehydrogenase subunit E1	NA	NA	NA	NA
SQI23904.1\|1885530_1886517_-	hydrolase	NA	NA	NA	NA
SQI23905.1\|1886658_1887000_+	putative acyl carrier protein	NA	NA	NA	NA
SQI23906.1\|1886996_1887842_+	beta-lactamase class C	NA	NA	NA	NA
SQI23907.1\|1887893_1888832_-	glutamate ABC transport system, permease	NA	NA	NA	NA
SQI23914.1\|1888831_1889518_-	glutamate ABC transport system, permease	NA	NA	NA	NA
SQI23916.1\|1889534_1890431_-	glutamate ABC transport system, solute-binding protein	NA	NA	NA	NA
SQI23917.1\|1890450_1891179_-	glutamate ABC transport system, ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-36	41.1
SQI23923.1\|1891368_1892088_+	nitroreductase	NA	NA	NA	NA
SQI23926.1\|1892460_1895196_+	CRISPR-associated protein	NA	NA	NA	NA
SQI23930.1\|1895322_1896957_+	CRISPR-associated protein	NA	NA	NA	NA
SQI23974.1\|1897001_1897637_+	CRISPR-associated protein	NA	NA	NA	NA
SQI23976.1\|1897665_1898796_+	CRISPR-associated protein	NA	NA	NA	NA
SQI23977.1\|1898795_1899503_+	CRISPR-associated protein	NA	NA	NA	NA
SQI23979.1\|1899499_1900174_+	CRISPR-associated protein	NA	NA	NA	NA
SQI23981.1\|1900184_1901126_+	CRISPR-associated protein	NA	NA	NA	NA
SQI23983.1\|1903965_1904115_-	Domain of uncharacterised function (DUF2825)	NA	NA	NA	NA
SQI23984.1\|1904228_1904519_-	Uncharacterised protein	NA	NA	NA	NA
SQI23985.1\|1904606_1904861_-	Uncharacterised protein	NA	NA	NA	NA
SQI23987.1\|1905471_1905672_+	Uncharacterised protein	NA	NA	NA	NA
SQI23988.1\|1905953_1906604_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQI23989.1\|1906635_1906914_-	Copper-sensitive operon repressor	NA	NA	NA	NA
SQI23991.1\|1906913_1909058_-	cation-transporting P-type ATPase	A0A218MNH6	uncultured_virus	9.2e-102	35.4
SQI23995.1\|1909083_1909725_-	Zn-dependent hydrolase	NA	NA	NA	NA
SQI23998.1\|1909767_1910868_-	Zn-dependent alcohol dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	1.2e-28	27.7
SQI24000.1\|1911057_1911372_+	Uncharacterised protein	NA	NA	NA	NA
SQI24003.1\|1911473_1912382_-\|transposase	transposase IS3520	Q8W6R2	Burkholderia_virus	9.1e-67	54.0
SQI24053.1\|1912378_1912699_-\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.6e-10	44.2
SQI24057.1\|1913600_1915316_+	lipid A export ATP-binding/permease protein msbA	W8CYL7	Bacillus_phage	3.5e-35	26.1
SQI24061.1\|1915308_1917084_+	ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-25	25.7
SQI24063.1\|1917481_1918300_-	Uncharacterised protein	NA	NA	NA	NA
SQI24065.1\|1918417_1918660_-	methylase	NA	NA	NA	NA
SQI24067.1\|1918669_1920658_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.3e-46	35.7
SQI24082.1\|1920818_1922600_+	cholesterol oxidase	NA	NA	NA	NA
SQI24083.1\|1922610_1923087_+	ribonuclease	NA	NA	NA	NA
SQI24084.1\|1923092_1924403_-	deoxyguanosinetriphosphate triphosphohydrolase-like protein	NA	NA	NA	NA
SQI24086.1\|1924434_1925076_-	putative secreted protein	NA	NA	NA	NA
SQI24087.1\|1925114_1927100_+	chromosome segregation ATPase	NA	NA	NA	NA
SQI24088.1\|1927614_1929135_-	phosphate permease	E5ESL8	Bathycoccus_sp._RCC1105_virus	5.1e-38	29.8
SQI24090.1\|1929731_1930940_+\|transposase	transposase	NA	NA	NA	NA
SQI24091.1\|1931113_1931731_-	Uncharacterised protein	NA	NA	NA	NA
SQI24094.1\|1931733_1933113_-\|tRNA	glycyl-tRNA synthetase	A0A2I2L3K8	Orpheovirus	1.4e-47	30.1
SQI24097.1\|1933435_1934620_+\|transposase	transposase IS3503b	NA	NA	NA	NA

DBSCAN-SWA_6

1974201 : 2041301

Tupanvirus(13.33%)

tRNA,transposase,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI24172.1\|1974201_1975350_+\|transposase	transposase for insertion sequence element	NA	NA	NA	NA
SQI24174.1\|1975441_1975645_-	CsbD family protein probably involved in stress response	NA	NA	NA	NA
SQI24175.1\|1975729_1976584_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
SQI24177.1\|1976668_1978525_-\|holin	choline-glycine betaine transporter	A0A2I7QNT1	Vibrio_phage	3.6e-17	23.8
SQI24179.1\|1978929_1979802_-	Uncharacterised protein	NA	NA	NA	NA
SQI24180.1\|1979873_1980830_-	putative lipoprotein	NA	NA	NA	NA
SQI24182.1\|1980934_1981600_-	serine/threonine specific protein phosphatase	G9FH15	Rhodococcus_phage	4.8e-25	35.2
SQI24183.1\|1981748_1982741_+	sodium-dependent transporter	NA	NA	NA	NA
SQI24184.1\|1982753_1983692_+	NADPH:quinone reductase	NA	NA	NA	NA
SQI24185.1\|1983749_1984373_+	Uncharacterised protein	NA	NA	NA	NA
SQI24186.1\|1984421_1984952_-	Uncharacterised protein	NA	NA	NA	NA
SQI24188.1\|1985017_1986850_+	Fusaric acid resistance protein family	NA	NA	NA	NA
SQI24190.1\|1986871_1988722_-	GTP-binding protein LepA	A0A2K9L6L3	Tupanvirus	4.5e-20	39.1
SQI24192.1\|1988862_1989438_+	PemK-like protein	NA	NA	NA	NA
SQI24194.1\|1989652_1989916_+	30S ribosomal protein S20	NA	NA	NA	NA
SQI24196.1\|1990125_1991163_+	ADP-ribosylglycohydrolase	A0A0K0N740	Gordonia_phage	8.6e-05	31.9
SQI24197.1\|1991203_1992187_-	DNA polymerase III subunit delta	NA	NA	NA	NA
SQI24198.1\|1992221_1994219_-	Competence protein ComE-like protein	NA	NA	NA	NA
SQI24200.1\|1994202_1995072_-	DNA uptake protein-related DNA-binding protein	NA	NA	NA	NA
SQI24201.1\|1995223_1996264_-	DegV family protein	NA	NA	NA	NA
SQI24203.1\|1996267_1997077_-	phosphoglycerate mutase	NA	NA	NA	NA
SQI24204.1\|1997096_1997570_-	Protein yqeL	NA	NA	NA	NA
SQI24206.1\|1997626_1998265_-	nicotinic acid mononucleotide adenylyltransferase	NA	NA	NA	NA
SQI24208.1\|1998400_1999243_+	Uncharacterised protein	NA	NA	NA	NA
SQI24210.1\|1999301_2000732_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	4.0e-85	46.9
SQI24212.1\|2000780_2001143_+	Uncharacterised protein	NA	NA	NA	NA
SQI24213.1\|2001223_2002567_-	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	5.7e-57	38.5
SQI24215.1\|2002621_2004133_-	GTPase ObgE	NA	NA	NA	NA
SQI24216.1\|2004351_2005536_+	iron ABC transport system, solute-binding protein	NA	NA	NA	NA
SQI24218.1\|2005554_2006682_+	iron ABC transport system, permease	NA	NA	NA	NA
SQI24219.1\|2006685_2007465_+	iron ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-14	30.7
SQI24221.1\|2007649_2007916_-	50S ribosomal protein L27	NA	NA	NA	NA
SQI24223.1\|2007961_2008264_-	50S ribosomal protein L21	NA	NA	NA	NA
SQI24224.1\|2008541_2011619_-	ribonuclease E	NA	NA	NA	NA
SQI24226.1\|2011659_2012544_+	Uncharacterised protein	NA	NA	NA	NA
SQI24227.1\|2012609_2013020_-	nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	3.5e-26	45.5
SQI24228.1\|2013074_2014424_-	putative secreted protein	NA	NA	NA	NA
SQI24230.1\|2014538_2015036_-	hypothetical membrane protein	NA	NA	NA	NA
SQI24231.1\|2015117_2016641_-	dihydrofolate synthase/folylpolyglutamate synthase	NA	NA	NA	NA
SQI24233.1\|2016637_2019436_-\|tRNA	valyl-tRNA synthetase	A0A1V0SK04	Klosneuvirus	5.2e-145	39.0
SQI24238.1\|2019493_2020591_-	lipase/esterase	NA	NA	NA	NA
SQI24239.1\|2020671_2021664_-	malate dehydrogenase	NA	NA	NA	NA
SQI24240.1\|2021912_2022650_+	TetR family transcriptional regulator	NA	NA	NA	NA
SQI24260.1\|2022646_2023921_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.4e-134	57.6
SQI24269.1\|2024060_2024690_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	4.2e-39	46.4
SQI24270.1\|2024693_2025260_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.5e-40	48.0
SQI24271.1\|2025477_2027091_-	trigger factor	NA	NA	NA	NA
SQI24273.1\|2027754_2028042_+	Uncharacterised protein	A0A1W6JRB8	Corynebacterium_phage	1.2e-09	44.3
SQI24274.1\|2028076_2028550_-	ribose 5-phosphate isomerase	NA	NA	NA	NA
SQI24276.1\|2028617_2029280_-	DSBA oxidoreductase	NA	NA	NA	NA
SQI24278.1\|2029322_2032001_+	Aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	5.3e-46	31.6
SQI24280.1\|2032084_2032474_+	hemoglobin-like protein	NA	NA	NA	NA
SQI24283.1\|2032476_2033271_+	permease	NA	NA	NA	NA
SQI24285.1\|2033316_2034069_-	Uncharacterised protein	NA	NA	NA	NA
SQI24287.1\|2034177_2034660_-	predicted thioesterase	NA	NA	NA	NA
SQI24289.1\|2034869_2036540_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.1e-49	28.9
SQI24291.1\|2036694_2037222_-	Single-stranded DNA-binding protein	NA	NA	NA	NA
SQI24293.1\|2037404_2039702_-	Copper resistance D domain-containing protein/Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA	NA	NA	NA
SQI24295.1\|2040113_2041301_-\|transposase	transposase IS3514b	NA	NA	NA	NA

DBSCAN-SWA_7

2045134 : 2100332

Bacillus_phage(25.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI24307.1\|2045134_2045779_+\|protease	CAAX amino terminal protease	NA	NA	NA	NA
SQI24309.1\|2045802_2046729_+	short-chain dehydrogenase	NA	NA	NA	NA
SQI24311.1\|2046786_2047419_+	oligoribonuclease	A0A1B3B0T8	Gordonia_phage	1.2e-17	32.3
SQI24313.1\|2047601_2048105_+	flavin-dependent reductase	NA	NA	NA	NA
SQI24315.1\|2048250_2048469_-	putative copper chaperone	NA	NA	NA	NA
SQI24318.1\|2049231_2050218_+	phytoene synthase	NA	NA	NA	NA
SQI24320.1\|2050256_2051453_-	lipoprotein	NA	NA	NA	NA
SQI24321.1\|2052074_2052266_+	Uncharacterised protein	NA	NA	NA	NA
SQI24323.1\|2053312_2054389_+	monooxygenase	NA	NA	NA	NA
SQI24325.1\|2054440_2055646_-	transport protein	NA	NA	NA	NA
SQI24327.1\|2055656_2055935_-	Protein of uncharacterised function (DUF3618)	NA	NA	NA	NA
SQI24329.1\|2056023_2056515_+	bacterioferritin comigratory protein	NA	NA	NA	NA
SQI24331.1\|2056781_2057225_+	hypothetical membrane protein	NA	NA	NA	NA
SQI24333.1\|2057228_2057594_+	hypothetical membrane protein	NA	NA	NA	NA
SQI24334.1\|2057646_2059041_-	Metal- dependentamidase/aminoacylase/carboxypeptidase	NA	NA	NA	NA
SQI24335.1\|2059233_2059887_-	deoxyribonucleotide triphosphate pyrophosphatase	NA	NA	NA	NA
SQI24336.1\|2059908_2060679_-	ribonuclease PH	NA	NA	NA	NA
SQI24337.1\|2060755_2061565_-	Metal-dependent hydrolase	NA	NA	NA	NA
SQI24338.1\|2061703_2067625_-	surface protein	NA	NA	NA	NA
SQI24339.1\|2067853_2068702_-	glutamate racemase	NA	NA	NA	NA
SQI24340.1\|2068717_2069926_-	L-aminopeptidase/D-esterase	NA	NA	NA	NA
SQI24342.1\|2069925_2070495_-	Domain of uncharacterised function (DUF2017)	NA	NA	NA	NA
SQI24344.1\|2070522_2070855_-\|protease	ATP-dependent Clp protease adaptor protein ClpS	NA	NA	NA	NA
SQI24345.1\|2070891_2072214_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-49	32.8
SQI24347.1\|2072222_2074265_+	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	5.0e-65	28.9
SQI24349.1\|2074276_2075530_-	Uncharacterised protein	NA	NA	NA	NA
SQI24350.1\|2075863_2077726_+	Isoniazid-inductible protein iniA	NA	NA	NA	NA
SQI24351.1\|2077726_2079199_+	Predicted GTPase	NA	NA	NA	NA
SQI24352.1\|2079283_2081380_+	molecular chaperone protein	A0A159KIK0	Grapevine_leafroll-associated_virus	1.1e-09	31.0
SQI24353.1\|2081511_2082087_-	ECF family RNA polymerase sigma factor W	NA	NA	NA	NA
SQI24354.1\|2082100_2082646_-	Uncharacterised protein	NA	NA	NA	NA
SQI24355.1\|2082968_2084546_+	acyl-CoA synthetase	Q75ZG1	Hepacivirus	4.3e-64	41.2
SQI24356.1\|2084578_2085961_-	phosphoserine phosphatase	NA	NA	NA	NA
SQI24357.1\|2086416_2087625_+\|transposase	transposase	NA	NA	NA	NA
SQI24358.1\|2088179_2089877_-	cytochrome c oxidase subunit I	NA	NA	NA	NA
SQI24359.1\|2090116_2091112_-	ribonucleotide-diphosphate reductase subunit beta	A0A160DHK0	Gordonia_phage	1.2e-141	77.2
SQI24360.1\|2091453_2091942_+	ferritin	NA	NA	NA	NA
SQI24361.1\|2092063_2094226_-	ribonucleotide-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.2e-210	51.7
SQI24362.1\|2094366_2094810_-	ribonucleotide reductase stimulatory protein	R4JF54	Bacillus_phage	4.1e-12	35.8
SQI24363.1\|2094891_2095122_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	5.2e-19	60.5
SQI24364.1\|2095539_2095662_-	50S ribosomal protein L36	NA	NA	NA	NA
SQI24365.1\|2095848_2096769_+	NAD synthetase	G3MA24	Bacillus_virus	1.4e-75	53.0
SQI24366.1\|2096787_2097399_-	hypothetical membrane protein	NA	NA	NA	NA
SQI24367.1\|2097533_2098079_+\|transposase	transposase IS3516c	NA	NA	NA	NA
SQI24368.1\|2098267_2098735_+\|transposase	transposase IS3515	A0A1B1P773	Bacillus_phage	1.1e-23	40.0
SQI24369.1\|2098878_2100018_+\|transposase	transposase IS1249a	NA	NA	NA	NA
SQI24370.1\|2100107_2100332_+\|transposase	transposase for insertion sequence element	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-15	55.9

DBSCAN-SWA_8

2237157 : 2299893

Bacillus_phage(14.29%)

tRNA,integrase,transposase,protease

attL 2244180:2244195|attR 2261893:2261908

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI24539.1\|2237157_2239353_-\|protease	protease II	A0A1V0SHT0	Klosneuvirus	2.2e-26	22.4
SQI24540.1\|2239396_2240290_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0M4JBD3	Mollivirus	1.1e-45	40.1
SQI24541.1\|2240431_2241862_-	adenylosuccinate lyase	NA	NA	NA	NA
SQI24542.1\|2241891_2242551_-	K(+)-uptake system protein	NA	NA	NA	NA
SQI24543.1\|2242543_2243908_-	TrkH family potassium uptake protein	NA	NA	NA	NA
SQI24544.1\|2243997_2245278_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
2244180:2244195	attL	NA	NA	NA	NA
SQI24545.1\|2245347_2245785_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
SQI24546.1\|2245851_2246970_+	triacylglycerol lipase	NA	NA	NA	NA
SQI24547.1\|2247007_2248663_-	two-component system sensor kinase TcsS1	W8CYF6	Bacillus_phage	1.9e-25	28.9
SQI24548.1\|2248688_2249390_-	two-component system response regulator TcsR1	W8CYM9	Bacillus_phage	1.5e-32	36.0
SQI24549.1\|2249589_2250276_+	putative secreted protein	NA	NA	NA	NA
SQI24550.1\|2250391_2250901_+	acetyltransferase	NA	NA	NA	NA
SQI24551.1\|2250949_2251675_-	Uncharacterised protein	NA	NA	NA	NA
SQI24552.1\|2251926_2253270_-\|transposase	transposase-like protein	A0A218MNI5	uncultured_virus	2.8e-32	34.8
SQI24553.1\|2253522_2254488_+\|transposase	transposase IS3514b	NA	NA	NA	NA
SQI24554.1\|2254937_2255147_+	Uncharacterised protein	NA	NA	NA	NA
SQI24555.1\|2255193_2256444_+\|integrase	phage integrase family site-specific recombinase	E4ZFN9	Streptococcus_phage	9.3e-62	39.9
SQI24556.1\|2256440_2258039_+	prophage resolvase	Q6DMS5	Streptococcus_phage	1.1e-115	55.1
SQI24557.1\|2258007_2258523_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQI24558.1\|2258876_2260064_+\|transposase	transposase IS3514b	NA	NA	NA	NA
SQI24559.1\|2260581_2262174_+	amino acid export carrier protein	NA	NA	NA	NA
2261893:2261908	attR	NA	NA	NA	NA
SQI24560.1\|2262244_2262643_+	Uncharacterised protein	NA	NA	NA	NA
SQI24561.1\|2262690_2264157_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
SQI24562.1\|2264156_2264639_+	putative secreted protein	NA	NA	NA	NA
SQI24563.1\|2264643_2265492_+	trehalose-6-phosphate phophatase, biosynthetic	NA	NA	NA	NA
SQI24564.1\|2265456_2266614_-	LacI family transcriptional regulator	NA	NA	NA	NA
SQI24565.1\|2266714_2267725_+	ABC transport system, solute-binding protein	NA	NA	NA	NA
SQI24566.1\|2267724_2268426_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.5e-13	27.8
SQI24567.1\|2268422_2269361_+	ABC transporter permease	NA	NA	NA	NA
SQI24568.1\|2269448_2271098_+	type B carboxylesterase	M1PNU1	Moumouvirus	3.0e-15	30.9
SQI24569.1\|2271149_2272160_-	Uncharacterised protein	NA	NA	NA	NA
SQI24570.1\|2272281_2272848_+	TetR family transcriptional regulator	NA	NA	NA	NA
SQI24571.1\|2272897_2273854_-	rRNA methylase	NA	NA	NA	NA
SQI24572.1\|2274057_2274930_-	putative cell-surface hemin receptor	NA	NA	NA	NA
SQI24573.1\|2274926_2275601_-	heme oxygenase	Q58M64	Prochlorococcus_phage	4.4e-26	32.2
SQI24574.1\|2275681_2276683_-	putative cell-surface hemin receptor	NA	NA	NA	NA
SQI24575.1\|2276688_2277597_-	iron ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	7.5e-13	30.6
SQI24576.1\|2277593_2278643_-	iron ABC transport system, permease	NA	NA	NA	NA
SQI24577.1\|2278626_2279718_-	iron ABC transport system, solute-binding protein	NA	NA	NA	NA
SQI24578.1\|2279766_2281701_-	putative cell-surface hemin receptor	NA	NA	NA	NA
SQI24579.1\|2281910_2282498_+	cell-surface hemin receptor	NA	NA	NA	NA
SQI24580.1\|2282454_2283909_-\|tRNA	cysteinyl-tRNA synthetase	A0A2K9L4N2	Tupanvirus	5.6e-42	32.6
SQI24581.1\|2283930_2284773_+	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase	NA	NA	NA	NA
SQI24583.1\|2284762_2285356_-	Uncharacterised protein	NA	NA	NA	NA
SQI24585.1\|2285355_2286543_-	ABC transport system, permease	NA	NA	NA	NA
SQI24586.1\|2286529_2287261_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.2e-15	29.7
SQI24587.1\|2287339_2287873_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
SQI24588.1\|2287883_2288711_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
SQI24589.1\|2288725_2289316_-	putative transcription factor	NA	NA	NA	NA
SQI24590.1\|2289571_2290168_+	putative secreted protein	NA	NA	NA	NA
SQI24591.1\|2290232_2291693_+	DNA repair protein RadA	NA	NA	NA	NA
SQI24592.1\|2291705_2292419_-	putative secreted protein	NA	NA	NA	NA
SQI24593.1\|2292486_2293131_-	beta-type carbonic anhydrase-like protein	NA	NA	NA	NA
SQI24594.1\|2293167_2294217_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
SQI24595.1\|2294300_2295767_+	branched-chain amino acid uptake carrier	NA	NA	NA	NA
SQI24596.1\|2295815_2297207_+	secretory lipase	NA	NA	NA	NA
SQI24597.1\|2297235_2299893_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	5.1e-134	38.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483459

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection