CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483456	Salmonella enterica subsp. salamae strain NCTC9930 genome assembly, chromosome: 1	3 crisprs	PD-DExK,DEDDh,cas3,csa3,DinG	2	15	13	2

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: LS483456_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483456_2

1138124-1139434

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCTAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRT

21 spacers

cas3

The CRISPR arrays of LS483456_2

>merge|LS483456|2|1138124-1139434|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCGACGAGGAGGCCGCGCAGGGCTGGTCAACGCTGGTGTTCCCCGCGCTAGCGGGGATAAACCGCCATCCATTTATTCATTAGCTGCCGCGCCTCGCGTGTTCCCCGCGCTAGCGGGGATAAACCGAAATTGAGTGTGATTTGTTCGCTGTAACCTCAGTGTTCCCCGCGCTAGCGGGGATAAACCGGCTACTGACGTCAAAATTTCCCGAAAAGAGCAGTGTTCCCCGCGCTAGCGGGGATAAACCGCGTGTTTGCCGCTCTTCAGCCCGTCGAGGGGGGTGTTCCCCGCGCTAGCGGGGATAAACCGAAGTATGGCGGCTACACATCCTGCGGCGGATCGTGTTCCCCGCGCTAGCGGGGATAAACCGCCGCCAGATTGGTGGTAGAGGCTGCGCAGGCTGTGTTCCCCGCGCTAGCGGGGATAAACCGTAGCGCCATTGCCTCATTGTTGAACGCGAATGGTGTTCCCCGCGCTAGCGGGGATAAACCGATGGCTATTTCTCAAAACTTTAAAACGCAGGTGTGTTCCCCGCGCTAGCGGGGATAAACCGGGCATTTTTGCCCCCAAATTTGCCCCCAAAATGTGTTCCCCGCGCTAGCGGGGATAAACCGTCCCCGGAAACGTTCGCCGAAACATTCCCGGAGTGTTCCCCGCGCTAGCGGGGATAAACCGTCGCCTTTTTTCCGCTTAACGTCTGCTGACGTGTGTTCCCCGCGCTAGCGGGGATAAACCGATGTGCCATAGCTTTTCCTGGCTTGAGTTGTAGTGTTCCCCGCGCTAGCGGGGATAAACCGAAAACAACATTTCGCACTCACCCAATCGCGGCGTGTTCCCCGCGCTAGCGGGGATAAACCGCTAAAGGTTATGATTTCGTTTGCCTCGATGGGGTGTTCCCCGCGCTAGCGGGGATAAACCGTAACTTATCCACAGCGGCGCGACTAACCTTCCGTGTTCCCCGCGCTAGCGGGGATAAACCGAAAACCAGCAATAGCGGGCGGGCGTTTATACGGTGTTCTCCGCGCTAGCGGGGATAAACCGGGAGGCTAGCCTCCCTCGTTTACTCTGGATCGGTGTTCCCCGCGCTAGCGGGGATAAACCGTCTGACCGTTCGTAGCGTTGGCAGGCTTTGTTGTGTTCCCCGCGCTAGCGGGGATAAACCGCACCCTTGTGAAAAGCCAGCAGCCATGATGGAGTGTTCCCCGCGCTAGCGGGGATAAACCCTGTATGTCGTTAATATGGGGATCGCTGAGGTCGTGTCCCCCGCGCCAGCGGGGATAGCCGT

>LS483456|2|1|1138124-1139373|PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACGAGGAGGCCGCGCAGGGCTGGTCAACGCTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCATCCATTTATTCATTAGCTGCCGCGCCTCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAATTGAGTGTGATTTGTTCGCTGTAACCTCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCTACTGACGTCAAAATTTCCCGAAAAGAGCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGTGTTTGCCGCTCTTCAGCCCGTCGAGGGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAGTATGGCGGCTACACATCCTGCGGCGGATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGCCAGATTGGTGGTAGAGGCTGCGCAGGCT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAGCGCCATTGCCTCATTGTTGAACGCGAATG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGGCTATTTCTCAAAACTTTAAAACGCAGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGCATTTTTGCCCCCAAATTTGCCCCCAAAAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCCCCGGAAACGTTCGCCGAAACATTCCCGGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGCCTTTTTTCCGCTTAACGTCTGCTGACGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGTGCCATAGCTTTTCCTGGCTTGAGTTGTA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAAACAACATTTCGCACTCACCCAATCGCGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTAAAGGTTATGATTTCGTTTGCCTCGATGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAACTTATCCACAGCGGCGCGACTAACCTTCC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAAACCAGCAATAGCGGGCGGGCGTTTATACG
GTGTTCTCCGCGCTAGCGGGGATAAACCG	GGAGGCTAGCCTCCCTCGTTTACTCTGGATCG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCTGACCGTTCGTAGCGTTGGCAGGCTTTGTT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACCCTTGTGAAAAGCCAGCAGCCATGATGGA
GTGTTCCCCGCGCTAGCGGGGATAAACCC

>LS483456|2|2|1138124-1139434|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACGAGGAGGCCGCGCAGGGCTGGTCAACGCTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCATCCATTTATTCATTAGCTGCCGCGCCTCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAATTGAGTGTGATTTGTTCGCTGTAACCTCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCTACTGACGTCAAAATTTCCCGAAAAGAGCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGTGTTTGCCGCTCTTCAGCCCGTCGAGGGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAGTATGGCGGCTACACATCCTGCGGCGGATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGCCAGATTGGTGGTAGAGGCTGCGCAGGCT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAGCGCCATTGCCTCATTGTTGAACGCGAATG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGGCTATTTCTCAAAACTTTAAAACGCAGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGCATTTTTGCCCCCAAATTTGCCCCCAAAAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCCCCGGAAACGTTCGCCGAAACATTCCCGGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGCCTTTTTTCCGCTTAACGTCTGCTGACGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGTGCCATAGCTTTTCCTGGCTTGAGTTGTA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAAACAACATTTCGCACTCACCCAATCGCGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTAAAGGTTATGATTTCGTTTGCCTCGATGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAACTTATCCACAGCGGCGCGACTAACCTTCC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAAACCAGCAATAGCGGGCGGGCGTTTATACG
GTGTTCTCCGCGCTAGCGGGGATAAACCG	GGAGGCTAGCCTCCCTCGTTTACTCTGGATCG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCTGACCGTTCGTAGCGTTGGCAGGCTTTGTT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACCCTTGTGAAAAGCCAGCAGCCATGATGGA
GTGTTCCCCGCGCTAGCGGGGATAAACCC	TGTATGTCGTTAATATGGGGATCGCTGAGGTC
GTGTCCCCCGCGCCAGCGGGGATAGCCGT

>LS483456|2|1|1138124-1139434|CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ACGAGGAGGCCGCGCAGGGCTGGTCAACGCTG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCATCCATTTATTCATTAGCTGCCGCGCCTCGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAATTGAGTGTGATTTGTTCGCTGTAACCTCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCTACTGACGTCAAAATTTCCCGAAAAGAGCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CGTGTTTGCCGCTCTTCAGCCCGTCGAGGGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAGTATGGCGGCTACACATCCTGCGGCGGATC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGCCAGATTGGTGGTAGAGGCTGCGCAGGCT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAGCGCCATTGCCTCATTGTTGAACGCGAATG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGGCTATTTCTCAAAACTTTAAAACGCAGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GGCATTTTTGCCCCCAAATTTGCCCCCAAAAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCCCCGGAAACGTTCGCCGAAACATTCCCGGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGCCTTTTTTCCGCTTAACGTCTGCTGACGT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGTGCCATAGCTTTTCCTGGCTTGAGTTGTA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAAACAACATTTCGCACTCACCCAATCGCGGC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTAAAGGTTATGATTTCGTTTGCCTCGATGGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAACTTATCCACAGCGGCGCGACTAACCTTCC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	AAAACCAGCAATAGCGGGCGGGCGTTTATACG
GTGTTCTCCGCGCTAGCGGGGATAAACCG	GGAGGCTAGCCTCCCTCGTTTACTCTGGATCG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCTGACCGTTCGTAGCGTTGGCAGGCTTTGTT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACCCTTGTGAAAAGCCAGCAGCCATGATGGA
GTGTTCCCCGCGCTAGCGGGGATAAACCC	TGTATGTCGTTAATATGGGGATCGCTGAGGTC
GTGTCCCCCGCGCCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483456.1\|SQH92517.1\|1130672_1132907_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LS483456.1\|SQH92518.1\|1132981_1133773_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483456.1\|SQH92524.1\|1141208_1143008_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483456.1\|SQH92523.1\|1140418_1140781_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483456.1\|SQH92527.1\|1145557_1146511_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483456.1\|SQH92512.1\|1122517_1123858_+\|glucarate-dehydratase-2	unknown	unknown	gnl\|CDD\|211799
LS483456.1\|SQH92525.1\|1143007_1144720_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483456.1\|SQH92529.1\|1148989_1150036_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483456.1\|SQH92521.1\|1137155_1137827_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483456.1\|SQH92513.1\|1123878_1125219_+\|glucarate-dehydratase-1	unknown	unknown	gnl\|CDD\|211799
LS483456.1\|SQH92526.1\|1144735_1145470_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483456.1\|SQH92531.1\|1151205_1152645_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483456.1\|SQH92514.1\|1125296_1126439_+\|Glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
LS483456.1\|SQH92516.1\|1129325_1130621_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|237291
LS483456.1\|SQH92519.1\|1134000_1135638_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483456.1\|SQH92528.1\|1146952_1148680_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483456.1\|SQH92522.1\|1139531_1140329_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483456.1\|SQH92530.1\|1150287_1151196_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483456.1\|SQH92520.1\|1135720_1137019_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483456.1\|SQH92515.1\|1126511_1129268_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	unknown	unknown	gnl\|CDD\|236848

Protein	Function_ID	Function_description	E-value
LS483456.1\|SQH92517.1\|1130672_1132907_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LS483456.1\|SQH92518.1\|1132981_1133773_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.02644e-157
LS483456.1\|SQH92524.1\|1141208_1143008_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483456.1\|SQH92523.1\|1140418_1140781_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LS483456.1\|SQH92527.1\|1145557_1146511_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483456.1\|SQH92512.1\|1122517_1123858_+\|glucarate-dehydratase-2	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
LS483456.1\|SQH92525.1\|1143007_1144720_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483456.1\|SQH92529.1\|1148989_1150036_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483456.1\|SQH92521.1\|1137155_1137827_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	6.83847e-155
LS483456.1\|SQH92513.1\|1123878_1125219_+\|glucarate-dehydratase-1	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
LS483456.1\|SQH92526.1\|1144735_1145470_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.64861e-136
LS483456.1\|SQH92531.1\|1151205_1152645_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483456.1\|SQH92514.1\|1125296_1126439_+\|Glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
LS483456.1\|SQH92516.1\|1129325_1130621_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LS483456.1\|SQH92519.1\|1134000_1135638_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483456.1\|SQH92528.1\|1146952_1148680_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.0491e-103
LS483456.1\|SQH92522.1\|1139531_1140329_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.15492e-99
LS483456.1\|SQH92530.1\|1150287_1151196_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483456.1\|SQH92520.1\|1135720_1137019_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483456.1\|SQH92515.1\|1126511_1129268_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0

>LS483456.1|SQH92521.1|1137155_1137827_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCVHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483456.1|SQH92520.1|1135720_1137019_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKSKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483456.1|SQH92519.1|1134000_1135638_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LS483456.1|SQH92518.1|1132981_1133773_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MNQIDRLLNIMQRLRDPEGGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELCADNSEEVLARWEQIKTEERAQKAQHSALDDIPRNFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483456.1|SQH92517.1|1130672_1132907_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKNEGVMAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGN
>LS483456.1|SQH92516.1|1129325_1130621_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MAQFYSAKRRVTTRQIITVKVNDLDPFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDNPERETPRCPHFGVCGGCQQQHVGIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLVPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQSWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>LS483456.1|SQH92515.1|1126511_1129268_-|BarA-sensory-histidine-kinase-(VarS-/-GacS)
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLAPSQMQLPAGAPFPRRLSVDRHGDIMILRPPIISESYSPDESVIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTTCLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHAEPLLMDASKIAMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEQAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGIHEEELEPEFLELLDEMDNVAREAKKILG
>LS483456.1|SQH92514.1|1125296_1126439_+|Glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVDVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACRIDVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALIRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEERLADADLVITGEGRIDSQTIHGKVPIGVANIAKRHNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALENAAENVRMTARNVAATLKTGSLLR
>LS483456.1|SQH92513.1|1123878_1125219_+|glucarate-dehydratase-1
MSAQFTTPVVTSMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPNARVTLDPNGAWSLNEAINIGRYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPTKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>LS483456.1|SQH92512.1|1122517_1123858_+|glucarate-dehydratase-2
MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGVGEAPGGEVIYQTLVDAIPMVLGQEVARLNSVVQRVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGQALNVPVCELLGPGKQRDVVTVLGYLFYIGDRAKTDLPYLESTPGSHEWYRLRHQEALNSDAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLLDEAIALCKGLNDVLAYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGKPTAIDTHWIWQEGDCRLTKNPLEIKNGTIAVPDAPGLGVELDWEQVRKAHDAYKKLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH
>LS483456.1|SQH92522.1|1139531_1140329_+|beta-lactamase
MALTIRVLLENHKGAGADKSLRARPGLSLLVQDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRRIKKLSREVDYSRYRMVYTRDPLPIGENFIWSGEIPVVAPETYGIVGGHDAEPDSILDEGVLIYQSVKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPLTLWRVRRFLQEQKTEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483456.1|SQH92523.1|1140418_1140781_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LS483456.1|SQH92524.1|1141208_1143008_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMTGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVVVTSTQGEGEPPEEAVALHKFLFSKKAPTLNDTAFAVFSLGDTSYEFFCQAGKDFDNKLAELGGERLLDRVDADVEYQTAAAQWRARVVDVLKSRTPVVTPAQPVASGAVNEIHTSPYTKEAPLRASLSLNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVIVDGKLLPLAEALQWHCELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAAATPIVDMVRFSPAQLDADALVGLLRPLTPRLYSIASSQAEVENEVHLTVGVVRYDIEGRARAGGASSFLADRIEEDGEVRVFIEHNDNFRLPTNPETPVIMIGPGTGIAPFRAFMQQRAAEDAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LS483456.1|SQH92525.1|1143007_1144720_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWKAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIVASVPESQKAKIEKLARDHGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFVDKVEAVMTKHGVGDEHIVLRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483456.1|SQH92526.1|1144735_1145470_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNVLNDLPKVDRILALAEANAELETLTAEERVTWALENLPGEYVLSSSFGIQAAVSLHLINQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALQELNAQTWFAGLRREQSGSRAHLPVLAIQRGIFKVLPIIDWDNRTVYQYLQKQGLKYHPLWDHGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483456.1|SQH92527.1|1145557_1146511_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHHNYTLNESRLAHLLSADKEKAIHMGKWDKVQDHFRAEKKDHALDVLYAIIHGQGRGEPGEMEVNVEDMGKIYAFKRLQHLACPAHQDLFNIKMDASQTQFLFMVGDTVISQSKIQDILNISDNAMVASMSREERQLFLRICEMIGATMTWHPELLQGSVSTLRKEVTSNVQIKAAVYEMMRPAEAPDHQFIEWQDTLTENEKSMLACINAGNFDTITQFCKIGYREVQGEVAFSMVHPCISYLLHTYSPFAEFKETNAGFLNKLNQDYNDYHTNKMFIDVILENIYLTHERSLHIGKNGCSRNILLA
>LS483456.1|SQH92528.1|1146952_1148680_+|helicase
MSIYHYWGKTRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNAFNEPTRYYEKIAHTTLGYELWNSWLSKCPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIAQFQQFSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANAWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNTTILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQATQTELISQRVDTRKEVERSVDIGWLHSEVSCLERIGEAVEKGNCIAWIRNSVFPAPAGINRLL
>LS483456.1|SQH92529.1|1148989_1150036_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFTVILALGVGFILPAQAALPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGMSVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAKKTS
>LS483456.1|SQH92530.1|1150287_1151196_+|Sulfate-adenylyltransferase-subunit-2-1
MAQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEIIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483456.1|SQH92531.1|1151205_1152645_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNIAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIETIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVREPVERGVTPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483456_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483456_3

1148642-1148975

Unclear

I-E

Consensus_repeat	Method
AGTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGNCAGCGGGGATAAACCG	CRT

5 spacers

The CRISPR arrays of LS483456_3

>merge|LS483456|3|1148642-1148975|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGATTACTCTGATGAAATGATTAAGGTGCTAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGACTGATCAGGCTGGAAGTTGGTCAGGTAGTGTTCCCCGCGTCAGCGGGGATAAACCGTGGTTAAGTCCGAGCTGGCGTGGCTTGCAGAAGTGTTCCCCGCGTCAGCGGGGATAAACCGGTTAAGTACAATCCTAACGATATTAAACGCCCGTGTTCCCCGCGTCAGCGGGGATAAACCGTCGGCCTCATCTCTCAGTGATTTTTCAACCCCGTGTTCCCCGCGTCAGCGGGGATAAACGC

>LS483456|3|2|1148642-1148792|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGA	TTACTCTGATGAAATGATTAAGGTGCTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCGC	TGGACTGATCAGGCTGGAAGTTGGTCAGGTA
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>LS483456|3|3|1148642-1148975|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTACTCTGATGAAATGATTAAGGTGCTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGACTGATCAGGCTGGAAGTTGGTCAGGTA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TGGTTAAGTCCGAGCTGGCGTGGCTTGCAGAA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GTTAAGTACAATCCTAACGATATTAAACGCCC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TCGGCCTCATCTCTCAGTGATTTTTCAACCCC
GTGTTCCCCGCGTCAGCGGGGATAAACGC

>LS483456|3|2|1148642-1148975|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTACTCTGATGAAATGATTAAGGTGCTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGACTGATCAGGCTGGAAGTTGGTCAGGTA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TGGTTAAGTCCGAGCTGGCGTGGCTTGCAGAA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GTTAAGTACAATCCTAACGATATTAAACGCCC
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TCGGCCTCATCTCTCAGTGATTTTTCAACCCC
GTGTTCCCCGCGTCAGCGGGGATAAACGC

Protein	Signature genes	Signature genes Name	Protein_function
LS483456.1\|SQH92529.1\|1148989_1150036_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483456.1\|SQH92518.1\|1132981_1133773_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483456.1\|SQH92524.1\|1141208_1143008_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483456.1\|SQH92525.1\|1143007_1144720_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483456.1\|SQH92527.1\|1145557_1146511_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483456.1\|SQH92536.1\|1154841_1155321_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LS483456.1\|SQH92537.1\|1155317_1156367_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LS483456.1\|SQH92521.1\|1137155_1137827_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483456.1\|SQH92538.1\|1156347_1157109_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LS483456.1\|SQH92526.1\|1144735_1145470_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483456.1\|SQH92531.1\|1151205_1152645_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483456.1\|SQH92535.1\|1154131_1154842_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LS483456.1\|SQH92534.1\|1153801_1154113_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LS483456.1\|SQH92523.1\|1140418_1140781_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483456.1\|SQH92519.1\|1134000_1135638_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483456.1\|SQH92533.1\|1153287_1153611_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LS483456.1\|SQH92522.1\|1139531_1140329_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483456.1\|SQH92530.1\|1150287_1151196_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483456.1\|SQH92520.1\|1135720_1137019_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483456.1\|SQH92532.1\|1152631_1153237_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
LS483456.1\|SQH92529.1\|1148989_1150036_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483456.1\|SQH92518.1\|1132981_1133773_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.02644e-157
LS483456.1\|SQH92524.1\|1141208_1143008_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483456.1\|SQH92525.1\|1143007_1144720_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483456.1\|SQH92527.1\|1145557_1146511_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483456.1\|SQH92536.1\|1154841_1155321_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	2.24322e-104
LS483456.1\|SQH92537.1\|1155317_1156367_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LS483456.1\|SQH92521.1\|1137155_1137827_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	6.83847e-155
LS483456.1\|SQH92538.1\|1156347_1157109_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.00208e-146
LS483456.1\|SQH92526.1\|1144735_1145470_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.64861e-136
LS483456.1\|SQH92531.1\|1151205_1152645_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483456.1\|SQH92535.1\|1154131_1154842_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.28089e-119
LS483456.1\|SQH92534.1\|1153801_1154113_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	9.72909e-65
LS483456.1\|SQH92523.1\|1140418_1140781_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LS483456.1\|SQH92519.1\|1134000_1135638_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483456.1\|SQH92533.1\|1153287_1153611_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.36723e-48
LS483456.1\|SQH92522.1\|1139531_1140329_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.15492e-99
LS483456.1\|SQH92530.1\|1150287_1151196_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483456.1\|SQH92520.1\|1135720_1137019_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483456.1\|SQH92532.1\|1152631_1153237_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.22548e-144

>LS483456.1|SQH92527.1|1145557_1146511_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHHNYTLNESRLAHLLSADKEKAIHMGKWDKVQDHFRAEKKDHALDVLYAIIHGQGRGEPGEMEVNVEDMGKIYAFKRLQHLACPAHQDLFNIKMDASQTQFLFMVGDTVISQSKIQDILNISDNAMVASMSREERQLFLRICEMIGATMTWHPELLQGSVSTLRKEVTSNVQIKAAVYEMMRPAEAPDHQFIEWQDTLTENEKSMLACINAGNFDTITQFCKIGYREVQGEVAFSMVHPCISYLLHTYSPFAEFKETNAGFLNKLNQDYNDYHTNKMFIDVILENIYLTHERSLHIGKNGCSRNILLA
>LS483456.1|SQH92526.1|1144735_1145470_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNVLNDLPKVDRILALAEANAELETLTAEERVTWALENLPGEYVLSSSFGIQAAVSLHLINQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALQELNAQTWFAGLRREQSGSRAHLPVLAIQRGIFKVLPIIDWDNRTVYQYLQKQGLKYHPLWDHGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483456.1|SQH92525.1|1143007_1144720_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWKAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIVASVPESQKAKIEKLARDHGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFVDKVEAVMTKHGVGDEHIVLRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483456.1|SQH92524.1|1141208_1143008_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMTGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVVVTSTQGEGEPPEEAVALHKFLFSKKAPTLNDTAFAVFSLGDTSYEFFCQAGKDFDNKLAELGGERLLDRVDADVEYQTAAAQWRARVVDVLKSRTPVVTPAQPVASGAVNEIHTSPYTKEAPLRASLSLNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVIVDGKLLPLAEALQWHCELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAAATPIVDMVRFSPAQLDADALVGLLRPLTPRLYSIASSQAEVENEVHLTVGVVRYDIEGRARAGGASSFLADRIEEDGEVRVFIEHNDNFRLPTNPETPVIMIGPGTGIAPFRAFMQQRAAEDAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LS483456.1|SQH92523.1|1140418_1140781_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LS483456.1|SQH92522.1|1139531_1140329_+|beta-lactamase
MALTIRVLLENHKGAGADKSLRARPGLSLLVQDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRRIKKLSREVDYSRYRMVYTRDPLPIGENFIWSGEIPVVAPETYGIVGGHDAEPDSILDEGVLIYQSVKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPLTLWRVRRFLQEQKTEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483456.1|SQH92521.1|1137155_1137827_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFVRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCVHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483456.1|SQH92520.1|1135720_1137019_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKSKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483456.1|SQH92519.1|1134000_1135638_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LS483456.1|SQH92518.1|1132981_1133773_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MNQIDRLLNIMQRLRDPEGGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELCADNSEEVLARWEQIKTEERAQKAQHSALDDIPRNFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483456.1|SQH92529.1|1148989_1150036_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFTVILALGVGFILPAQAALPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGMSVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAKKTS
>LS483456.1|SQH92530.1|1150287_1151196_+|Sulfate-adenylyltransferase-subunit-2-1
MAQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEIIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483456.1|SQH92531.1|1151205_1152645_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNIAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIETIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVREPVERGVTPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LS483456.1|SQH92532.1|1152631_1153237_+|adenosine-5-phosphosulfate-kinase
MAQHDENVVWHAHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVQERVGHERFIEIYVDTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LS483456.1|SQH92533.1|1153287_1153611_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFIVDDDTTSSLPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LS483456.1|SQH92534.1|1153801_1154113_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTNR
>LS483456.1|SQH92535.1|1154131_1154842_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKTVIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LS483456.1|SQH92536.1|1154841_1155321_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQSPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LS483456.1|SQH92537.1|1155317_1156367_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFAPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSDAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQREALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LS483456.1|SQH92538.1|1156347_1157109_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLGQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: LS483456_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483456_5

2352868-2353014

Orphan

I-E

Consensus_repeat	Method
GTTCCCCGCGAGAGCGGGGATAAACCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of LS483456_5

>merge|LS483456|5|2352868-2353014|CRISPRCasFinder
GTTCCCCGCGAGAGCGGGGATAAACCGTTAGCGTTCATCCTGATACTCCACGAACTCAGGTTCCCCGCGAGAGCGGGGATAAACCGGCGGCAGGATGAATAAGCATATCGAGAGAATGGTGTTCCCCGCGAGAGCGCTGAGTTTGTG

>LS483456|5|5|2352868-2353014|CRISPRCasFinder
GTTCCCCGCGAGAGCGGGGATAAACCG	TTAGCGTTCATCCTGATACTCCACGAACTCAG
GTTCCCCGCGAGAGCGGGGATAAACCG	GCGGCAGGATGAATAAGCATATCGAGAGAATGGT
GTTCCCCGCGAGAGCGCTGAGTTTGTG

Protein	Signature genes	Signature genes Name	Protein_function
LS483456.1\|SQH93635.1\|2339971_2341237_+\|invasin	unknown	unknown	gnl\|CDD\|236661
LS483456.1\|SQH93634.1\|2339282_2339636_-\|Putative-ACR-protein	unknown	unknown	gnl\|CDD\|224470
LS483456.1\|SQH93642.1\|2351781_2352459_+\|respiratory-nitrate-reductase-1-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
LS483456.1\|SQH93643.1\|2354048_2354891_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
LS483456.1\|SQH93639.1\|2345799_2349543_+\|respiratory-nitrate-reductase-1-subunit-alpha	unknown	unknown	gnl\|CDD\|162434
LS483456.1\|SQH93636.1\|2341237_2341888_-\|nitrate/nitrite-response-regulator-protein-NarL	unknown	unknown	gnl\|CDD\|182619
LS483456.1\|SQH93638.1\|2344015_2345413_+\|major-facilitator-superfamily-nitrite-extrusion-protein	unknown	unknown	gnl\|CDD\|184994
LS483456.1\|SQH93641.1\|2351071_2351782_+\|respiratory-nitrate-reductase-1-subunit-delta	unknown	unknown	gnl\|CDD\|185014
LS483456.1\|SQH93649.1\|2359838_2360456_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
LS483456.1\|SQH93644.1\|2354941_2355400_-\|Protein-YchJ	unknown	unknown	gnl\|CDD\|234966
LS483456.1\|SQH93651.1\|2363807_2364455_+\|membrane-protein	unknown	unknown	gnl\|CDD\|236850
LS483456.1\|SQH93646.1\|2356506_2357520_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|182652
LS483456.1\|SQH93637.1\|2341880_2343677_-\|Nitrate/nitrite-sensor-protein	unknown	unknown	gnl\|CDD\|182581
LS483456.1\|SQH93640.1\|2349539_2351075_+\|respiratory-nitrate-reductase-1-subunit-beta	unknown	unknown	gnl\|CDD\|224063
LS483456.1\|SQH93645.1\|2355519_2356416_+\|phospholipase,-patatin-family	unknown	unknown	gnl\|CDD\|182352
LS483456.1\|SQH93650.1\|2360652_2363331_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
LS483456.1\|SQH93647.1\|2357722_2358631_+\|glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|184021
LS483456.1\|SQH93652.1\|2365219_2366851_+\|oligopeptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|185059
LS483456.1\|SQH93633.1\|2338566_2339256_+\|cation-transport-protein	unknown	unknown	gnl\|CDD\|226226
LS483456.1\|SQH93648.1\|2358762_2359176_-\|DNA-binding-protein-h-ns	unknown	unknown	gnl\|CDD\|182858

Protein	Function_ID	Function_description	E-value
LS483456.1\|SQH93635.1\|2339971_2341237_+\|invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
LS483456.1\|SQH93634.1\|2339282_2339636_-\|Putative-ACR-protein	gnl\|CDD\|224470	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism].	3.7796e-50
LS483456.1\|SQH93642.1\|2351781_2352459_+\|respiratory-nitrate-reductase-1-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	7.98868e-133
LS483456.1\|SQH93643.1\|2354048_2354891_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	9.83293e-177
LS483456.1\|SQH93639.1\|2345799_2349543_+\|respiratory-nitrate-reductase-1-subunit-alpha	gnl\|CDD\|162434	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens (GP:11344601), E.coli (SP:P09152) and B.subtilis (SP:P42175). All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. Pfam models pfam00384 (Molybdopterin oxidoreductase) and pfam01568(Molydopterin dinucleotide binding domain) will also match the nitrate reductase, alpha subunit. [Energy metabolism, Anaerobic].	0
LS483456.1\|SQH93636.1\|2341237_2341888_-\|nitrate/nitrite-response-regulator-protein-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.27802e-141
LS483456.1\|SQH93638.1\|2344015_2345413_+\|major-facilitator-superfamily-nitrite-extrusion-protein	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
LS483456.1\|SQH93641.1\|2351071_2351782_+\|respiratory-nitrate-reductase-1-subunit-delta	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	2.17148e-87
LS483456.1\|SQH93649.1\|2359838_2360456_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.50577e-115
LS483456.1\|SQH93644.1\|2354941_2355400_-\|Protein-YchJ	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	1.35103e-106
LS483456.1\|SQH93651.1\|2363807_2364455_+\|membrane-protein	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	6.2097e-137
LS483456.1\|SQH93646.1\|2356506_2357520_+\|regulatory-protein	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
LS483456.1\|SQH93637.1\|2341880_2343677_-\|Nitrate/nitrite-sensor-protein	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
LS483456.1\|SQH93640.1\|2349539_2351075_+\|respiratory-nitrate-reductase-1-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
LS483456.1\|SQH93645.1\|2355519_2356416_+\|phospholipase,-patatin-family	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
LS483456.1\|SQH93650.1\|2360652_2363331_-\|alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
LS483456.1\|SQH93647.1\|2357722_2358631_+\|glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
LS483456.1\|SQH93652.1\|2365219_2366851_+\|oligopeptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
LS483456.1\|SQH93633.1\|2338566_2339256_+\|cation-transport-protein	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	2.48769e-76
LS483456.1\|SQH93648.1\|2358762_2359176_-\|DNA-binding-protein-h-ns	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	4.918e-77

>LS483456.1|SQH93642.1|2351781_2352459_+|respiratory-nitrate-reductase-1-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPVDVKQKMAMIAGGACGVLTLVGGILLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASEHLDGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKYQLVRARH
>LS483456.1|SQH93641.1|2351071_2351782_+|respiratory-nitrate-reductase-1-subunit-delta
MIELVIVSRLLEYPDAALWQHQQELFDALASSEHLDKEDVRTLVVFLRDLTAQEILDAQASYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYEQHGLQLDSRELPDHLPLYLEYLAQLPKNDALGGLQDIAPILALLSARLQQRESRYAVLFDLLLKLANTTIDKGKVAEKIADEVRDDTPQALDAVWEEEQVKFFADRGCNESEIAAHQRRFAGAVAPQYLNITTGGQH
>LS483456.1|SQH93640.1|2349539_2351075_+|respiratory-nitrate-reductase-1-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRALLLGKIFANPHLPGIDDYYEPFDYDYQNLHTAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFENMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPAVVEQALKDGVPQSVIDAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVDSLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGKVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHRELARDAFPEKSGCGFTFGDGCHGSDTKFNLFNSRRIDAVDVTSKTEPHA
>LS483456.1|SQH93639.1|2345799_2349543_+|respiratory-nitrate-reductase-1-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLETNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDMPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKKLHRDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPRQYFTDYVRRYTDMPMLVVLEERDGYYAAGRMLRAADLVGSLGQENNPEWKTVAISSNGEMVAPNGSIGFRWGEKGKWNLEQRDGTTGAETELQLSLLGSQDEIADVGFPYFGGEGSEYFNHVALDNVLLHKLPAKRLQLADGSSALVTTVYDLTMANYGLERGLNDENCAASYDDTKAYTPAWAEQITGVPRAQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLVFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGTNPLYIAREAEKAGMTPVDYTVKSLKDGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTEHGIQGLDLGKQGGVKPEEVEWVDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWDIYKGIAKKFSEVCVGHLGKETDVVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMTVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYIKADGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLATNKEEEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGRKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSETDAKDLGIEDNDWIEVFNSNGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAQLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>LS483456.1|SQH93638.1|2344015_2345413_+|major-facilitator-superfamily-nitrite-extrusion-protein
MSHSSAPERATGAVITEWRPEDPAFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPLFGGRRWTAFSTGILIVPCVWLGFAVQDTSTPFSTFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAAFGSQGVEQPDGSQLYLANAAWIWVPFLAIFTLAAWFGMNELATSKASLKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSAGGAISDRLGGTRVTLINFVLMAIFSGLLFLTLPTGGVGGSFIAFYGVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSEERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKNKK
>LS483456.1|SQH93637.1|2341880_2343677_-|Nitrate/nitrite-sensor-protein
MFKRCFSPLTLVNQLALIVMLSTAIGVAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRLLAAVPLDAKDQKLLDEMEQTAFSPELTRAAERDGQQKQLKALQDYWHNELSPGLQHAQNAHVVAEDVSRFVAGLDRLVTSFDHTTELRIERVVLVHRVMAIFMALLLVFTIIWLRVRLLQPWKQLLSMARAVSQRDFTQRANISGRNEMAALGSALNNMSEELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSQAPLCERLSPVLNGLQNLTQLHDIELRVYDLEDEDNHQEFTCQSDISCDDKGCHLCPRSALPMINGGTTLKWRLTDSHTQYGILLATLPYGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNCSWAQLRELLTTFRLQLTEPGLRPALEASCQEFSARFGFTVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSHADDVVVTVTQCGKQVKLKVQDNGCGVPENAERSNHYGMIIMRDRAQSLRGDCQVRRRETGGTEVTVTFIPETNFTETQGDTHE
>LS483456.1|SQH93636.1|2341237_2341888_-|nitrate/nitrite-response-regulator-protein-NarL
MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASNGEQGIDLAESLDPDLILLDLNMPGMNGLETLDKLREKALSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTDRDVTQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>LS483456.1|SQH93635.1|2339971_2341237_+|invasin
MMPESHEGEKHFAEMAKAFGEASMKNNDLDTGEQARQFAFGQVRDVVSEQVNQQLESWLSAWGSASVDVNVDNEGHFNGSRGSWFIPLQDKQRYLTWSQLGLTQQTDGLVSNVGVGQRWAQDGWLLGYNTFYDNLLDENLQRAGVGAEAWGEYLRLSANYYQPFADWQTHTATLEQRMARGYDINAQMRLPFYQHINTSVSLEQYFGDSVDLFDSGTGYHNPVALKLGLNYTPVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLAASEVAQSQSLRGSRYDTPQRNSLPTMEYRQRKTLTVFLATPPWDLTPGETVALKLQVRSVHGIRHLSWQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRVSSNEITLALTEPFITMSDDNPHWQQFLEQ
>LS483456.1|SQH93634.1|2339282_2339636_-|Putative-ACR-protein
MQNIVIIANGAAYGSESLFNSLRLAIALREQESHLDLRLFLMSDAVTAGLRGQKPAEGYNIQQMLEILTAQNVPVKLCKTCADGRGITPLPLIDGVEIGTLVELAQWTLAADKVLTF
>LS483456.1|SQH93633.1|2338566_2339256_+|cation-transport-protein
MLTRDFLVNADCKTAFGAIEESLLWSAEQRAVSLAATLACRPNDGAVWIFGYGSLMWNPALVYEESCTGTLEGWHRAFCLRLTAGRGTACQPGRMLALKEGGRTTGVAYRLPESTLEEELTLLWKREMITGCYLPTWCSLTLDNGRMVNALVFIMDPRHPLYESDTHALTIAPLIAAASGPLGTNAQYLFLLDQELRKLGMHDTCLDDLVANVKALLGVKGEQGIANLS
>LS483456.1|SQH93643.1|2354048_2354891_-|formyltetrahydrofolate-deformylase
MQSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVEIAAVIGNHETLRSLVERFEIPFELVSHEGLTREEHDRKMADAIDAHQPDYVVLAKYMRVLTPGFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>LS483456.1|SQH93644.1|2354941_2355400_-|Protein-YchJ
MSQPCPCGSADEYSLCCGRIVSGERVAPDPSHLMRSRYCAFVMKDADYLIKSWHPTCNAAAFRDDIIAGFANTRWLGLTIFEHTWSEAENTGYVSFIARFSEQGKTGAIIERSRFIKENGQWYYIDGTRPQLGRNDPCPCGSGKKFKKCCGQ
>LS483456.1|SQH93645.1|2355519_2356416_+|phospholipase,-patatin-family
MKIGLALGSGAARGWSHIGVIKALKQTGIDIDIVAGCSIGSLVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGRGGLLRGERVFNHYRDIMPVTDFDHCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLLSVNVGNINEESDDSLPWHKRLKERFSSLTSRRGVSSPGAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAHAAIAAGQLAVEKKMDELIPLVRTDV
>LS483456.1|SQH93646.1|2356506_2357520_+|regulatory-protein
MTQPLVGKQILIVEDEPVFRSLLDSWFSSLGATTALAGDGVDALELMGRFTPDLMICDIAMPRMNGLKLVENLRNRGDQTPILVISATENMADIAKALRLGVEDVLLKPVKDLNRLRETVFACLYPNMFNSRVEEEERLFRDWDAMVSNPTAAAQLLQELQPPVQQVISHCRINYRQLVSADQPGLVLDIAPLSDNELAFYCLDVTRAGDNGVLAALLLRALFNGLLQDQLGQQKHRLPELGALLKQVNHLLRQANLPGQFPLFVGYYHSELKNLILVSAGLNATLNTGAHQVQISSGVPLGTLGNAYLNQLSQRCDSWQCQIWGAGGRLRLMLSAE
>LS483456.1|SQH93647.1|2357722_2358631_+|glucose-1-phosphate-uridylyltransferase
MAALNSKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGNEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGNSQIMVEPVEDVTAYGVVNCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWALLAKTPPGTGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNSLGAEFKAWLEEEMGIKK
>LS483456.1|SQH93648.1|2358762_2359176_-|DNA-binding-protein-h-ns
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE
>LS483456.1|SQH93649.1|2359838_2360456_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPAKLFNQNTSLFEEIRAESARQTIHCVLVDESQFLTRQQVYQLSEVVDKLDIPVLCYGLRTDFRGELFVGSQYLLSWSDKLVELKTICFCGRKASMVLRLDQDGRPYNEGEQVVIGGNERYVSVCRKHYKDALEEGSLTAIQERHRHI
>LS483456.1|SQH93650.1|2360652_2363331_-|alcohol-dehydrogenase
MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIIEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRARFASHGGYMLQGQELKAVQNVILKNGALNAAIVGQPAYKIAELAGFSVPETTKILIGEVTVVDESEPFAHEKLSPTLAMYRAKDFEEAVEKAEKLVAMGGIGHTSCLYTDQDNQQDRVNYFGQKMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLSVVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKENLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGRDFTEGEVAAKKDVVAAPKAEKKAKKSA
>LS483456.1|SQH93651.1|2363807_2364455_+|membrane-protein
MIQTLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARNKTNLTANLSVAIILWSSLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALFALCCWGVFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN
>LS483456.1|SQH93652.1|2365219_2366851_+|oligopeptide-ABC-transporter-substrate-binding-protein
MSNITKKSLIAAGILTALIAANAATAADVPAGVQLADKQTLVRNNGSEVQSLDPHKIEGVPESNVSRDLFEGLLISDVEGHPSPGVAEKWENKDFKVWTFHLRKNAKWSDGTPVTAHDFVYSWQRLADPNTASPYASYLQYGHIANIDDIIAGKKPATDLGVKALDDHTFEVTLSEPVPYFYKLLVHPSVSPVPKSAVEKFGDKWTQPANIVTNGAYKLKNWVVNERIVLERNPQYWDNDKTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPNEVRVDPYLCTYYYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTPPYTDGAKLVEPEWFKWSQQKRNEEAKKLLAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKSPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPLDNIYVKNLYIIKH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483456_2	2.21\|1139374\|32\|LS483456\|CRISPRCasFinder,CRT	1139374-1139405	32	LS483456.1	972420-972451	0	1.0
LS483456_2	2.19\|1139252\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139252-1139283	32	LS483456.1	3880360-3880391	2	0.938

1. spacer 2.21|1139374|32|LS483456|CRISPRCasFinder,CRT matches to position: 972420-972451, mismatch: 0, identity: 1.0

tgtatgtcgttaatatggggatcgctgaggtc	CRISPR spacer
tgtatgtcgttaatatggggatcgctgaggtc	Protospacer
********************************

2. spacer 2.19|1139252|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to position: 3880360-3880391, mismatch: 2, identity: 0.938

tctgaccgttcgtagcgttggcaggctttgtt	CRISPR spacer
tctgaccgttcgtagagctggcaggctttgtt	Protospacer
*************** *.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483456_2	2.3\|1138276\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138276-1138307	32	KT630649	Salmonella phage SEN34, complete genome	32606-32637	0	1.0
LS483456_2	2.19\|1139252\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139252-1139283	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	7786-7817	0	1.0
LS483456_2	2.3\|1138276\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138276-1138307	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	27847-27878	1	0.969
LS483456_2	2.19\|1139252\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139252-1139283	32	CP053410	Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence	94131-94162	1	0.969
LS483456_2	2.19\|1139252\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139252-1139283	32	NZ_CP014707	Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence	38717-38748	2	0.938
LS483456_2	2.19\|1139252\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139252-1139283	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	69673-69704	2	0.938
LS483456_2	2.19\|1139252\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139252-1139283	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	85932-85963	2	0.938
LS483456_2	2.10\|1138703\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138703-1138734	32	MK524177	Escherichia phage PHB10, complete genome	42713-42744	6	0.812
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MH727544	Mycobacterium phage Dalmuri, complete genome	58723-58754	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MN234182	Mycobacterium phage Geraldini, complete genome	58833-58864	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MF140412	Mycobacterium phage Jeckyll, complete genome	58723-58754	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	KY380102	Mycobacterium phage CREW, complete genome	58722-58753	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MH536822	Mycobacterium phage Joy99, complete genome	58852-58883	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	KJ567045	Mycobacterium phage Emerson, complete genome	59325-59356	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	NC_014458	Mycobacterium phage Angelica, complete genome	58613-58644	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MG962364	Mycobacterium phage Deby, complete genome	59478-59509	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MH536821	Mycobacterium phage Homura, complete genome	58723-58754	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	NC_014459	Mycobacterium virus CrimD, complete genome	58814-58845	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MF668267	Mycobacterium phage Apocalypse, complete genome	58964-58995	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MH697578	Mycobacterium phage Belladonna, complete genome	58723-58754	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MH509444	Mycobacterium phage BEEST, complete genome	58921-58952	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MN369742	Mycobacterium phage Spock, complete genome	58724-58755	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MK112537	Mycobacterium Phage Capricorn, complete genome	58723-58754	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	MN369746	Mycobacterium phage Inky, complete genome	58723-58754	7	0.781
LS483456_2	2.5\|1138398\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138398-1138429	32	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	26004-26035	7	0.781
LS483456_2	2.5\|1138398\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138398-1138429	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	963141-963172	7	0.781
LS483456_2	2.5\|1138398\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138398-1138429	32	NC_010847	Paracoccus aminophilus strain JCM 7686 plasmid pAMI2, complete sequence	14751-14782	7	0.781
LS483456_2	2.5\|1138398\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138398-1138429	32	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	4670-4701	7	0.781
LS483456_2	2.5\|1138398\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138398-1138429	32	NZ_CP039651	Azospirillum sp. TSA2s plasmid p1	352559-352590	7	0.781
LS483456_3	3.5\|1148793\|32\|LS483456\|CRISPRCasFinder,CRT	1148793-1148824	32	NZ_CP011248	Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence	317017-317048	7	0.781
LS483456_3	3.5\|1148793\|32\|LS483456\|CRISPRCasFinder,CRT	1148793-1148824	32	NZ_CP032919	Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence	587727-587758	7	0.781
LS483456_3	3.5\|1148793\|32\|LS483456\|CRISPRCasFinder,CRT	1148793-1148824	32	NZ_CP033029	Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence	587810-587841	7	0.781
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	199186-199217	8	0.75
LS483456_2	2.5\|1138398\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138398-1138429	32	NC_009425	Enterobacter sp. 638 plasmid pENTE01, complete sequence	111680-111711	8	0.75
LS483456_2	2.13\|1138886\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138886-1138917	32	MN694610	Marine virus AFVG_250M990, complete genome	24831-24862	8	0.75
LS483456_2	2.13\|1138886\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138886-1138917	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	42068-42099	8	0.75
LS483456_2	2.19\|1139252\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139252-1139283	32	NZ_CP040453	Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence	126347-126378	8	0.75
LS483456_3	3.2\|1148733\|31\|LS483456\|PILER-CR	1148733-1148763	31	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1782731-1782761	8	0.742
LS483456_3	3.2\|1148733\|31\|LS483456\|PILER-CR	1148733-1148763	31	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1696113-1696143	8	0.742
LS483456_3	3.2\|1148733\|31\|LS483456\|PILER-CR	1148733-1148763	31	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1696114-1696144	8	0.742
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	639057-639088	9	0.719
LS483456_2	2.1\|1138153\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138153-1138184	32	NC_048791	Corynebacterium phage Adelaide, complete genome	27677-27708	9	0.719
LS483456_2	2.3\|1138276\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138276-1138307	32	NZ_CP012702	Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 2, complete sequence	7014-7045	9	0.719
LS483456_2	2.7\|1138520\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138520-1138551	32	MG198782	Arthrobacter phage MeganNoll, complete genome	32705-32736	9	0.719
LS483456_2	2.7\|1138520\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138520-1138551	32	KU160662	Arthrobacter phage RAP15, complete genome	32705-32736	9	0.719
LS483456_2	2.17\|1139130\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139130-1139161	32	MG700550	Klebsiella pneumoniae strain st015788/2 plasmid pUJ-84KPC, complete sequence	34540-34571	9	0.719
LS483456_3	3.4\|1148732\|32\|LS483456\|CRISPRCasFinder,CRT	1148732-1148763	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1782730-1782761	9	0.719
LS483456_3	3.4\|1148732\|32\|LS483456\|CRISPRCasFinder,CRT	1148732-1148763	32	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	28930-28961	9	0.719
LS483456_3	3.4\|1148732\|32\|LS483456\|CRISPRCasFinder,CRT	1148732-1148763	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1696112-1696143	9	0.719
LS483456_3	3.4\|1148732\|32\|LS483456\|CRISPRCasFinder,CRT	1148732-1148763	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1696113-1696144	9	0.719
LS483456_3	3.5\|1148793\|32\|LS483456\|CRISPRCasFinder,CRT	1148793-1148824	32	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	44609-44640	9	0.719
LS483456_3	3.6\|1148854\|32\|LS483456\|CRISPRCasFinder,CRT	1148854-1148885	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	13360-13391	9	0.719
LS483456_3	3.6\|1148854\|32\|LS483456\|CRISPRCasFinder,CRT	1148854-1148885	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	236644-236675	9	0.719
LS483456_3	3.6\|1148854\|32\|LS483456\|CRISPRCasFinder,CRT	1148854-1148885	32	NZ_CP017109	Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence	4929-4960	9	0.719
LS483456_3	3.6\|1148854\|32\|LS483456\|CRISPRCasFinder,CRT	1148854-1148885	32	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	10325-10356	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	58634-58665	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	1293755-1293786	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	1377244-1377275	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	49004-49035	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	786354-786385	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	258661-258692	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	15355-15386	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	1142960-1142991	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	427556-427587	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	46109-46140	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	684005-684036	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	581400-581431	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	302731-302762	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	1238190-1238221	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	45900-45931	9	0.719
LS483456_5	5.1\|2352895\|32\|LS483456\|CRISPRCasFinder	2352895-2352926	32	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	1292092-1292123	9	0.719
LS483456_2	2.3\|1138276\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138276-1138307	32	NZ_CP018223	Tardibacter chloracetimidivorans strain JJ-A5 plasmid pHSL2, complete sequence	19643-19674	10	0.688
LS483456_2	2.5\|1138398\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138398-1138429	32	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	573995-574026	10	0.688
LS483456_2	2.10\|1138703\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1138703-1138734	32	NZ_CP020540	Sphingobium herbicidovorans strain MH plasmid pSHV1, complete sequence	112101-112132	10	0.688
LS483456_2	2.20\|1139313\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139313-1139344	32	NZ_CP045340	Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence	326605-326636	10	0.688
LS483456_3	3.2\|1148733\|31\|LS483456\|PILER-CR	1148733-1148763	31	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	756197-756227	10	0.677
LS483456_3	3.4\|1148732\|32\|LS483456\|CRISPRCasFinder,CRT	1148732-1148763	32	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	756197-756228	10	0.688
LS483456_2	2.21\|1139374\|32\|LS483456\|CRISPRCasFinder,CRT	1139374-1139405	32	KP007359	Enterobacteria phage vB_EcoM_VR5, complete genome	17826-17857	11	0.656
LS483456_3	3.6\|1148854\|32\|LS483456\|CRISPRCasFinder,CRT	1148854-1148885	32	LR535912	XXX	25889-25920	11	0.656

1. spacer 2.3|1138276|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to KT630649 (Salmonella phage SEN34, complete genome) position: , mismatch: 0, identity: 1.0

aaattgagtgtgatttgttcgctgtaacctca	CRISPR spacer
aaattgagtgtgatttgttcgctgtaacctca	Protospacer
********************************

2. spacer 2.19|1139252|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

tctgaccgttcgtagcgttggcaggctttgtt	CRISPR spacer
tctgaccgttcgtagcgttggcaggctttgtt	Protospacer
********************************

3. spacer 2.3|1138276|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.969

aaattgagtgtgatttgttcgctgtaacctca	CRISPR spacer
aaattgagtgtgattcgttcgctgtaacctca	Protospacer
***************.****************

4. spacer 2.19|1139252|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.969

tctgaccgttcgtagcgttggcaggctttgtt	CRISPR spacer
tctgaccgttcgtagcgttggccggctttgtt	Protospacer
********************** *********

5. spacer 2.19|1139252|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014707 (Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence) position: , mismatch: 2, identity: 0.938

tctgaccgttcgtagcgttggcaggctttgtt	CRISPR spacer
tctgaccgttcgtagcgttggtcggctttgtt	Protospacer
*********************. *********

6. spacer 2.19|1139252|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

tctgaccgttcgtagcgttggcaggctttgtt	CRISPR spacer
tctgaccgttcgtagcgttagccggctttgtt	Protospacer
*******************.** *********

7. spacer 2.19|1139252|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

tctgaccgttcgtagcgttggcaggctttgtt	CRISPR spacer
tctgaccgttcgtagcgttagccggctttgtt	Protospacer
*******************.** *********

8. spacer 2.10|1138703|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MK524177 (Escherichia phage PHB10, complete genome) position: , mismatch: 6, identity: 0.812

ggcatttttgcccccaaatttgcccccaaaat	CRISPR spacer
cgcatttttgcccctaaatttgcccctatctt	Protospacer
 *************.***********.*   *

9. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MH727544 (Mycobacterium phage Dalmuri, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

10. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MN234182 (Mycobacterium phage Geraldini, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

11. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MF140412 (Mycobacterium phage Jeckyll, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

12. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to KY380102 (Mycobacterium phage CREW, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

13. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MH536822 (Mycobacterium phage Joy99, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

14. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to KJ567045 (Mycobacterium phage Emerson, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

15. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NC_014458 (Mycobacterium phage Angelica, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

16. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MG962364 (Mycobacterium phage Deby, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

17. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MH536821 (Mycobacterium phage Homura, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

18. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NC_014459 (Mycobacterium virus CrimD, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

19. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MF668267 (Mycobacterium phage Apocalypse, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

20. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MH697578 (Mycobacterium phage Belladonna, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

21. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MH509444 (Mycobacterium phage BEEST, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

22. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MN369742 (Mycobacterium phage Spock, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

23. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MK112537 (Mycobacterium Phage Capricorn, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

24. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MN369746 (Mycobacterium phage Inky, complete genome) position: , mismatch: 7, identity: 0.781

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
gataggaggccgcgcaacgctggtcaacgcct	Protospacer
.  *************. ************.

25. spacer 2.5|1138398|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 7, identity: 0.781

cgtgtttgccgctcttcagcccgtcgaggggg	CRISPR spacer
cgctcgtgccgctcgtcagcccgtcgacgggc	Protospacer
**. . ******** ************ ***

26. spacer 2.5|1138398|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

-cgtgtttgccgctcttcagcccgtcgaggggg	CRISPR spacer
gcgcg-ttgccgctcttcagccgatcgagcccg	Protospacer
 **.* **************** .*****   *

27. spacer 2.5|1138398|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NC_010847 (Paracoccus aminophilus strain JCM 7686 plasmid pAMI2, complete sequence) position: , mismatch: 7, identity: 0.781

cgtgtttgccgctcttcagcccgtcgaggggg	CRISPR spacer
cgtagaagtcgctcttcagcccgtcggggagg	Protospacer
***.   *.*****************.**.**

28. spacer 2.5|1138398|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054622 (Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.781

cgtgtttgccgctcttcagcccgtcgaggggg	CRISPR spacer
ggcggttgacgctctccagcccgtcgagcagg	Protospacer
 *.* *** ******.************ .**

29. spacer 2.5|1138398|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039651 (Azospirillum sp. TSA2s plasmid p1) position: , mismatch: 7, identity: 0.781

cgtgtttgccgctcttcagcccgtcgaggggg	CRISPR spacer
ggcggttgacgctctccagcccgtcgagcagg	Protospacer
 *.* *** ******.************ .**

30. spacer 3.5|1148793|32|LS483456|CRISPRCasFinder,CRT matches to NZ_CP011248 (Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence) position: , mismatch: 7, identity: 0.781

tggttaagtccgagctggcgtggcttgcagaa	CRISPR spacer
tggccgtttccgacctgccgtggcttgcagaa	Protospacer
***...  ***** *** **************

31. spacer 3.5|1148793|32|LS483456|CRISPRCasFinder,CRT matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 7, identity: 0.781

tggttaagtccgagctggcgtggcttgcagaa	CRISPR spacer
tggccgtttccgacctgccgtggcttgcagaa	Protospacer
***...  ***** *** **************

32. spacer 3.5|1148793|32|LS483456|CRISPRCasFinder,CRT matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 7, identity: 0.781

tggttaagtccgagctggcgtggcttgcagaa	CRISPR spacer
tggccgtttccgacctgccgtggcttgcagaa	Protospacer
***...  ***** *** **************

33. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 8, identity: 0.75

acgag-gaggccgcgcagggctggtcaacgctg	CRISPR spacer
-cgcgcaaggccgcgccgggctgggcaacggca	Protospacer
 ** * .********* ******* ***** ..

34. spacer 2.5|1138398|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NC_009425 (Enterobacter sp. 638 plasmid pENTE01, complete sequence) position: , mismatch: 8, identity: 0.75

cgtgtttgccgctcttcagcccgtcgaggggg	CRISPR spacer
cgtgtttgccgttcttcagcacgcagctgatg	Protospacer
***********.******** **. *  *. *

35. spacer 2.13|1138886|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MN694610 (Marine virus AFVG_250M990, complete genome) position: , mismatch: 8, identity: 0.75

atgtgccatagcttttcctggcttgagttgta	CRISPR spacer
cttatccatagcctttcctggctttagttctc	Protospacer
 *   *******.*********** **** *

36. spacer 2.13|1138886|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

atgtgccatagcttttcctggcttgagttgta	CRISPR spacer
agaacccatagcttttcttcgcttgagtcgaa	Protospacer
* .  ************.* ********.* *

37. spacer 2.19|1139252|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040453 (Halomonas sp. PA16-9 plasmid p_unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tctgaccgttcgtagcgttggcaggctttgtt	CRISPR spacer
gcgaatggttcgtggtgttggcaggctttgtc	Protospacer
 * .*. ******.*.***************.

38. spacer 3.2|1148733|31|LS483456|PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.742

ctggactgatcaggctggaagttggtcaggt	CRISPR spacer
atcagccgatccggctggaagttgctcaggc	Protospacer
 * ..*.**** ************ *****.

39. spacer 3.2|1148733|31|LS483456|PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

ctggactgatcaggctggaagttggtcaggt	CRISPR spacer
atcagccgatccggctggaagttgctcaggc	Protospacer
 * ..*.**** ************ *****.

40. spacer 3.2|1148733|31|LS483456|PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

ctggactgatcaggctggaagttggtcaggt	CRISPR spacer
atcagccgatccggctggaagttgctcaggc	Protospacer
 * ..*.**** ************ *****.

41. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

acgaggaggccgcgcagggctggtcaacgctg	CRISPR spacer
cagaaccggccgcgccgggctggtctacgcac	Protospacer
  **.  ******** ********* ****

42. spacer 2.1|1138153|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NC_048791 (Corynebacterium phage Adelaide, complete genome) position: , mismatch: 9, identity: 0.719

acgaggagg-------ccgcgcagggctggtcaacgctg	CRISPR spacer
-------ggtgctgtcccgcgccgggctggttaacgctg	Protospacer
       **       ****** ********.*******

43. spacer 2.3|1138276|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012702 (Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

aaattgagtgtgatttgttcgctgtaacctca	CRISPR spacer
tgttccagtgcgatttgttcgctgtaaccggc	Protospacer
 . *. ****.******************

44. spacer 2.7|1138520|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MG198782 (Arthrobacter phage MeganNoll, complete genome) position: , mismatch: 9, identity: 0.719

ccgccagattggtggtagaggctgcgcaggct	CRISPR spacer
ccctgtgatttggggtagaggctgcgcagctc	Protospacer
** .  **** * **************** ..

45. spacer 2.7|1138520|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to KU160662 (Arthrobacter phage RAP15, complete genome) position: , mismatch: 9, identity: 0.719

ccgccagattggtggtagaggctgcgcaggct	CRISPR spacer
ccctgtgatttggggtagaggctgcgcagctc	Protospacer
** .  **** * **************** ..

46. spacer 2.17|1139130|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to MG700550 (Klebsiella pneumoniae strain st015788/2 plasmid pUJ-84KPC, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaccagcaatagcgggcgggcgtttatacg	CRISPR spacer
gataccggcaataccgggcgggcgtttcattt	Protospacer
.* ***.****** *************   .

47. spacer 3.4|1148732|32|LS483456|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 9, identity: 0.719

ctggactgatcaggctggaagttggtcaggta	CRISPR spacer
atcagccgatccggctggaagttgctcaggcc	Protospacer
 * ..*.**** ************ *****.

48. spacer 3.4|1148732|32|LS483456|CRISPRCasFinder,CRT matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 9, identity: 0.719

ctggactgatcaggctggaagttggtcaggta	CRISPR spacer
tcccagcgctcaggctggaagtcggtgaggta	Protospacer
..  * .* *************.*** *****

49. spacer 3.4|1148732|32|LS483456|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ctggactgatcaggctggaagttggtcaggta	CRISPR spacer
atcagccgatccggctggaagttgctcaggcc	Protospacer
 * ..*.**** ************ *****.

50. spacer 3.4|1148732|32|LS483456|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ctggactgatcaggctggaagttggtcaggta	CRISPR spacer
atcagccgatccggctggaagttgctcaggcc	Protospacer
 * ..*.**** ************ *****.

51. spacer 3.5|1148793|32|LS483456|CRISPRCasFinder,CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tggttaagtccgagctggcgtggcttgcagaa	CRISPR spacer
tcaccatcaccaagctggcgtggcttgcggaa	Protospacer
* ...*   **.****************.***

52. spacer 3.6|1148854|32|LS483456|CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gttaagtacaatcctaacgatattaaacgccc	CRISPR spacer
tggaagtacgatcctaacaatattaatccatc	Protospacer
   ******.********.******* *  .*

53. spacer 3.6|1148854|32|LS483456|CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.719

gttaagtacaatcctaacgatattaaacgccc	CRISPR spacer
tggaagtacgatcctaacaatattaatccatc	Protospacer
   ******.********.******* *  .*

54. spacer 3.6|1148854|32|LS483456|CRISPRCasFinder,CRT matches to NZ_CP017109 (Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence) position: , mismatch: 9, identity: 0.719

gttaagtacaatcctaacgatattaaacgccc	CRISPR spacer
tggaagtacgatcctaacaatattaatccatc	Protospacer
   ******.********.******* *  .*

55. spacer 3.6|1148854|32|LS483456|CRISPRCasFinder,CRT matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 9, identity: 0.719

gttaagtacaatcctaacgatattaaacgccc	CRISPR spacer
tggaagtacgatcctaacaatattaatccatc	Protospacer
   ******.********.******* *  .*

56. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

57. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

58. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

59. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

60. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

61. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

62. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

63. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

64. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

65. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

66. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

67. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

68. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

69. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

70. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

71. spacer 5.1|2352895|32|LS483456|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.719

ttagcgttcatcctgatactccacgaactcag	CRISPR spacer
gacttgatcaacctgatacgccacgaactcgg	Protospacer
    .* *** ******** **********.*

72. spacer 2.3|1138276|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018223 (Tardibacter chloracetimidivorans strain JJ-A5 plasmid pHSL2, complete sequence) position: , mismatch: 10, identity: 0.688

aaattgagtgtgatttgttcgctgtaacctca	CRISPR spacer
tgttccagtgcaatttgttcgctgtaaccggc	Protospacer
 . *. ****..*****************

73. spacer 2.5|1138398|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 10, identity: 0.688

cgtgtttgccgctcttcagcccgtcgaggggg	CRISPR spacer
tgatggcgccgctctccagcccggcgagggcc	Protospacer
.*    .********.******* ******

74. spacer 2.10|1138703|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020540 (Sphingobium herbicidovorans strain MH plasmid pSHV1, complete sequence) position: , mismatch: 10, identity: 0.688

ggcatttttgcccccaaatttgcccccaaaat	CRISPR spacer
ttgaacaatgcccccaaaactgcccccaaaaa	Protospacer
   * .  ********** .***********

75. spacer 2.20|1139313|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045340 (Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence) position: , mismatch: 10, identity: 0.688

cacccttgtgaaaagccagcagccatgatgga	CRISPR spacer
aatgtacctgaaaaaccagcaaccatgatggg	Protospacer
 *. . . ******.******.*********.

76. spacer 3.2|1148733|31|LS483456|PILER-CR matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.677

ctggactgatcaggctggaagttggtcaggt	CRISPR spacer
gcattgcgatcagggtggaagttgttcagga	Protospacer
 ..   .******* ********* *****

77. spacer 3.4|1148732|32|LS483456|CRISPRCasFinder,CRT matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ctggactgatcaggctggaagttggtcaggta	CRISPR spacer
gcattgcgatcagggtggaagttgttcaggaa	Protospacer
 ..   .******* ********* ***** *

78. spacer 2.21|1139374|32|LS483456|CRISPRCasFinder,CRT matches to KP007359 (Enterobacteria phage vB_EcoM_VR5, complete genome) position: , mismatch: 11, identity: 0.656

tgtatgtcgttaatatggggatcgctgaggtc	CRISPR spacer
atgatgtcgttaatatgggtatccctagcaag	Protospacer
   **************** *** **.. .

79. spacer 3.6|1148854|32|LS483456|CRISPRCasFinder,CRT matches to LR535912 (XXX) position: , mismatch: 11, identity: 0.656

gttaagtacaatcctaacgatattaaacgccc	CRISPR spacer
aacccgtacaatcctaaagagattaaacagga	Protospacer
. .  ************ ** *******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

671465 : 712741

Cronobacter_phage(65.79%)

plate,capsid,terminase,integrase,tail,tRNA

attL 668480:668495|attR 699039:699054

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
668480:668495	attL	NA	NA	NA	NA
SQH92063.1\|671465_671798_+\|tRNA	methionyl-tRNA synthetase	NA	NA	NA	NA
SQH92064.1\|671892_673272_-	putrescine--2-oxoglutarate aminotransferase	A0A1V0SKB7	Klosneuvirus	1.4e-31	28.5
SQH92065.1\|673701_675222_+	aerotaxis receptor protein	A0A1B0V854	Salmonella_phage	4.5e-34	48.5
SQH92066.1\|675614_677183_+	Methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-12	27.1
SQH92067.1\|677179_677824_-	transcriptional regulator	NA	NA	NA	NA
SQH92068.1\|678058_678826_+	siderophore-interacting protein	NA	NA	NA	NA
SQH92069.1\|679286_680324_-\|integrase	Phage integrase	F1BUS9	Erwinia_phage	7.1e-124	65.6
SQH92070.1\|680310_681204_-	Uncharacterised protein	NA	NA	NA	NA
SQH92071.1\|681232_681811_-	repressor protein	A0A218M4J1	Erwinia_phage	2.0e-27	39.5
SQH92072.1\|681930_682152_+	Uncharacterised protein	NA	NA	NA	NA
SQH92073.1\|682182_682686_+	phage protein	F1BUN6	Cronobacter_phage	3.5e-60	72.5
SQH92074.1\|682695_682923_+	Uncharacterised protein	NA	NA	NA	NA
SQH92075.1\|682912_683338_+	Uncharacterised protein	F1BUN5	Cronobacter_phage	7.6e-24	50.4
SQH92076.1\|683337_683739_+	Uncharacterised protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
SQH92077.1\|683806_684061_+	Protein of uncharacterised function (DUF2732)	NA	NA	NA	NA
SQH92078.1\|684051_684648_+	exonuclease	A0A1S6L012	Salmonella_phage	3.8e-74	72.3
SQH92079.1\|684644_684974_+	gp91	Q2P9X4	Enterobacteria_phage	3.0e-12	45.2
SQH92080.1\|684963_685824_+	putative phage gene	F1BUN1	Cronobacter_phage	9.3e-130	82.0
SQH92081.1\|685820_687842_+	Phage replication protein	F1BUM9	Cronobacter_phage	4.2e-298	74.8
SQH92082.1\|687961_688168_+	Uncharacterised protein	NA	NA	NA	NA
SQH92083.1\|688141_688411_-	zinc-finger protein	F1BUM8	Cronobacter_phage	5.1e-42	94.3
SQH92084.1\|688461_689523_-	Membrane protein	F1BUM7	Cronobacter_phage	4.3e-161	76.8
SQH92085.1\|689519_691295_-\|terminase	Phage terminase ATPase subunit	F1BUM5	Cronobacter_phage	6.3e-290	82.9
SQH92086.1\|691455_692256_+\|capsid	putative capsid scaffolding protein	F1BUM4	Cronobacter_phage	1.1e-76	55.1
SQH92087.1\|692317_693340_+\|capsid	Phage major capsid protein	F1BUM2	Cronobacter_phage	1.1e-158	81.2
SQH92088.1\|693343_694048_+\|terminase	phage terminase subunit	F1BUM0	Cronobacter_phage	1.0e-86	67.4
SQH92089.1\|694051_694246_+	Uncharacterised protein	Q8W634	Enterobacteria_phage	3.3e-11	58.6
SQH92090.1\|694291_694795_+	putative phage gene	F1BUL8	Cronobacter_phage	2.3e-64	82.7
SQH92091.1\|694791_695298_+	putative phage gene	F1BUL7	Cronobacter_phage	5.2e-64	69.8
SQH92092.1\|695294_696002_+	Phage virion morphogenesis protein	F1BUL6	Cronobacter_phage	7.5e-101	76.1
SQH92093.1\|695998_697126_+	Topoisomerase IA	F1BUL5	Cronobacter_phage	1.9e-175	83.7
SQH92094.1\|697122_697578_+	phage protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
SQH92095.1\|697587_697881_+	Holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
SQH92096.1\|697877_698219_+	hypothetical phage-related protein	F1BUL3	Cronobacter_phage	2.2e-50	91.1
SQH92097.1\|698218_698551_+	putative phage-related protein	F1BUL2	Cronobacter_phage	3.7e-34	70.9
SQH92098.1\|698697_698955_+	putative phage gene	A5X9I7	Aeromonas_virus	4.7e-21	62.2
SQH92099.1\|699142_701113_+\|tail	Phage-related tail protein	F1BUK9	Cronobacter_phage	7.1e-266	68.8
699039:699054	attR	NA	NA	NA	NA
SQH92100.1\|701109_701439_+	phage protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
SQH92101.1\|701435_702620_+\|plate	Phage baseplate	F1BUK6	Cronobacter_phage	6.7e-179	78.1
SQH92102.1\|702612_703200_+\|tail	Bacteriophage P2-related tail formation protein	F1BUK5	Cronobacter_phage	4.9e-90	82.1
SQH92103.1\|703209_705447_+	gp19	Q8HAB4	Salmonella_phage	1.1e-217	85.5
SQH92104.1\|705446_706022_+\|tail	putative phage tail protein	Q8HAB3	Salmonella_phage	4.5e-104	96.3
SQH92105.1\|706011_706737_+	phage protein	F1BUK1	Cronobacter_phage	1.3e-68	56.8
SQH92106.1\|706708_707254_+	phage protein	F1BUJ9	Cronobacter_phage	3.5e-58	71.4
SQH92107.1\|707253_708957_+	phage protein	F1BUJ7	Cronobacter_phage	1.3e-223	81.1
SQH92108.1\|709545_709707_-	Uncharacterised protein	NA	NA	NA	NA
SQH92109.1\|710129_710636_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
SQH92110.1\|710758_712741_-	RNA polymerase sigma-70 factor	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7

DBSCAN-SWA_2

1396719 : 1431553

uncultured_Caudovirales_phage(34.62%)

tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH92756.1\|1396719_1398111_-	phage-related DNA helicase	Q3LZN8	Bacteriophage	5.4e-212	73.7
SQH92757.1\|1399048_1399318_-	putative phage related protein	B6SD64	Bacteriophage	1.8e-26	65.9
SQH92758.1\|1399320_1399509_-	Uncharacterised protein	NA	NA	NA	NA
SQH92759.1\|1399509_1399722_-	Uncharacterised protein	NA	NA	NA	NA
SQH92760.1\|1399732_1399948_-	Uncharacterised protein	NA	NA	NA	NA
SQH92761.1\|1399944_1400247_-	Uncharacterised protein	A0A0B4SK56	Proteus_phage	4.1e-08	32.0
SQH92762.1\|1400252_1402319_-	bifunctional 3'-5' exonuclease/DNA polymerase	Q775A3	Bordetella_phage	1.2e-276	68.4
SQH92763.1\|1402394_1403231_-	putative lipoprotein	V5KSK5	Escherichia_phage	4.7e-94	73.3
SQH92764.1\|1403227_1403419_-	Uncharacterised protein	NA	NA	NA	NA
SQH92765.1\|1403463_1404012_-	Protein of uncharacterised function (DUF2815)	Q775A5	Bordetella_phage	3.8e-68	66.5
SQH92766.1\|1404027_1405332_-	Protein of uncharacterised function (DUF2800)	B6SCX9	Bacteriophage	1.1e-142	59.2
SQH92767.1\|1405334_1406237_-	Uncharacterised protein	NA	NA	NA	NA
SQH92768.1\|1406233_1406383_-	Uncharacterised protein	NA	NA	NA	NA
SQH92769.1\|1406495_1407020_-	Mobile element protein	C9EH97	Sodalis_phage	1.9e-40	48.8
SQH92770.1\|1407451_1408081_-	DNA-binding protein	A0A1I9KG86	Aeromonas_phage	7.0e-34	40.9
SQH92771.1\|1408191_1408413_+	regulatory protein Cro (antirepressor)	Q716D6	Shigella_phage	5.1e-08	50.0
SQH92772.1\|1408416_1410585_+	Predicted P-loop ATPase and inactivated derivatives	B6SCY1	Bacteriophage	4.5e-173	72.4
SQH92773.1\|1411445_1411826_+	Uncharacterised protein	NA	NA	NA	NA
SQH92774.1\|1411837_1412068_+	Uncharacterised protein	NA	NA	NA	NA
SQH92775.1\|1412071_1413694_+\|head,tail	Bacteriophage head to tail connecting protein	A0A2H4J3N6	uncultured_Caudovirales_phage	8.6e-169	57.3
SQH92776.1\|1413693_1413924_+	Uncharacterised protein	NA	NA	NA	NA
SQH92777.1\|1413910_1414747_+	Uncharacterised protein	A0A2H4JEQ5	uncultured_Caudovirales_phage	9.3e-42	39.1
SQH92778.1\|1415117_1416029_+	Uncharacterised protein	A0A2H4JC66	uncultured_Caudovirales_phage	5.4e-43	38.3
SQH92779.1\|1416087_1416651_+	Uncharacterised protein	A0A2H4JID6	uncultured_Caudovirales_phage	1.1e-49	51.3
SQH92780.1\|1416652_1418641_+	Uncharacterised protein	A0A2H4J6H2	uncultured_Caudovirales_phage	2.4e-189	48.7
SQH92781.1\|1418642_1419092_+	Acetyltransferase (GNAT) family	A0A2H4J9Z5	uncultured_Caudovirales_phage	5.2e-23	43.0
SQH92782.1\|1419094_1419568_+	Uncharacterised protein	A0A2H4J679	uncultured_Caudovirales_phage	1.7e-08	48.1
SQH92783.1\|1419564_1422273_+	lytic transglycosylase	G9L6D3	Escherichia_phage	0.0e+00	66.5
SQH92784.1\|1422272_1425164_+	Uncharacterised protein	G9L6D4	Escherichia_phage	0.0e+00	76.6
SQH92785.1\|1425210_1425702_+	Uncharacterised protein	NA	NA	NA	NA
SQH92786.1\|1425766_1426108_+	Uncharacterised protein	A0A2H4J7H0	uncultured_Caudovirales_phage	9.1e-20	50.9
SQH92787.1\|1426104_1427715_+	Uncharacterised protein	A0A2H4JCA3	uncultured_Caudovirales_phage	8.2e-220	69.0
SQH92788.1\|1427734_1430140_+	Colanic acid biosynthesis protein wcaM	A0A140G607	Enterobacteria_phage	6.6e-165	46.6
SQH92789.1\|1430444_1430675_+	Lysis protein S	A5LH82	Enterobacteria_phage	3.6e-20	69.6
SQH92790.1\|1430655_1431189_+	Phage endolysin R	K7PLY1	Enterobacteria_phage	3.9e-86	88.2
SQH92791.1\|1431178_1431553_+	Uncharacterised protein	R9TPM9	Aeromonas_phage	1.1e-15	46.2

DBSCAN-SWA_3

1625657 : 1687026

Salmonella_phage(60.94%)

coat,holin,protease,portal,terminase,lysis,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH92952.1\|1625657_1626698_+\|protease	metalloprotease	NA	NA	NA	NA
SQH92953.1\|1626719_1629215_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
SQH92954.1\|1629322_1630177_-	Putative HTH-type transcriptional regulator ypdC	NA	NA	NA	NA
SQH92955.1\|1630763_1632002_+	aminotransferase	NA	NA	NA	NA
SQH92956.1\|1632524_1633445_-	Protein Ddg	A0A1W6JP29	Morganella_phage	5.4e-75	53.5
SQH92957.1\|1633716_1633833_+	transporter	NA	NA	NA	NA
SQH92958.1\|1633990_1634233_+	Protein of uncharacterised function (DUF2545)	NA	NA	NA	NA
SQH92959.1\|1634307_1635699_-	phosphoglycerate transporter	NA	NA	NA	NA
SQH92960.1\|1636053_1637328_+	phosphoglycerate transport: protein for signal transmission	NA	NA	NA	NA
SQH92961.1\|1637324_1639331_+	histidine kinase	NA	NA	NA	NA
SQH92962.1\|1639317_1640568_+	Nitrogen assimilation regulatory protein	NA	NA	NA	NA
SQH92963.1\|1640700_1640796_-	Uncharacterised protein	NA	NA	NA	NA
SQH92964.1\|1640835_1641774_+\|protease	outer membrane protease	NA	NA	NA	NA
SQH92965.1\|1642033_1642237_-	Gene 18 protein	C6ZR24	Salmonella_phage	8.0e-32	97.0
SQH92966.1\|1642205_1642331_-	HTH Phage	NA	NA	NA	NA
SQH92967.1\|1642333_1642678_-	Uncharacterised protein	K7PJY7	Enterobacterial_phage	7.6e-59	98.2
SQH92968.1\|1642750_1643548_-	Eaa protein	M9NZE4	Enterobacteria_phage	2.6e-41	50.5
SQH92969.1\|1643544_1643898_-	bacteriophage protein	Q8HAA6	Salmonella_phage	7.4e-33	63.0
SQH92970.1\|1643894_1644155_-	Uncharacterised protein	NA	NA	NA	NA
SQH92971.1\|1644151_1645012_-	DNA modification methylase	Q5QF26	Pseudomonas_virus	1.2e-68	50.2
SQH92972.1\|1645008_1645239_-	phage protein	Q8HAA4	Salmonella_phage	5.0e-30	92.1
SQH92973.1\|1645235_1645883_-	Uncharacterised protein	M1F3E2	Salmonella_phage	1.9e-66	60.5
SQH92974.1\|1645879_1646470_-	Eae protein	Q5G8U6	Enterobacteria_phage	6.1e-64	68.4
SQH92975.1\|1646466_1646637_-	prophage protein	I6S642	Salmonella_phage	3.3e-23	96.4
SQH92976.1\|1646647_1646941_-	anti-RecBCD protein 2	A0A1V0E5L7	Salmonella_phage	5.5e-50	100.0
SQH92977.1\|1646956_1647505_-	endodeoxyribonuclease	C6ZR35	Salmonella_phage	2.1e-106	100.0
SQH92978.1\|1647513_1648020_-	ssDNA-binding protein controls activity of RecBCD nuclease	C6ZR36	Salmonella_phage	1.0e-91	100.0
SQH92979.1\|1648020_1648728_-	recombinase	E7C9Q0	Salmonella_phage	7.6e-138	97.9
SQH92980.1\|1648921_1649035_-	Bacteriophage lambda Kil protein	C6ZR39	Salmonella_phage	7.8e-13	100.0
SQH92981.1\|1649027_1649174_-	regulatory protein	E7C9Q3	Salmonella_phage	1.3e-20	100.0
SQH92982.1\|1649393_1649864_-	Uncharacterised protein	A0A1I9LJN4	Stx_converting_phage	9.1e-87	98.7
SQH92983.1\|1649917_1650124_-	Uncharacterised protein	NA	NA	NA	NA
SQH92984.1\|1650133_1650469_-	bacteriophage ST64T protein 24	Q5G8T5	Enterobacteria_phage	3.2e-46	86.0
SQH92985.1\|1650823_1651528_-	LexA repressor	Q8HAG7	Salmonella_phage	1.3e-132	98.7
SQH92986.1\|1651604_1651820_+	Uncharacterized HTH-type transcriptional regulator AF_2414	A0A0M4RTV8	Salmonella_phage	4.1e-34	100.0
SQH92987.1\|1651930_1652212_+	regulatory protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
SQH92988.1\|1652246_1652393_+	Protein of uncharacterised function (DUF2740)	A0A0M4S617	Salmonella_phage	1.9e-19	100.0
SQH92989.1\|1652385_1652568_+\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	NA	NA	NA	NA
SQH92990.1\|1652551_1653379_+	replication of DNA	Q76H52	Enterobacteria_phage	5.8e-145	95.9
SQH92991.1\|1653375_1654752_+	DNA helicase	A0A075B8G2	Enterobacteria_phage	2.8e-253	99.3
SQH92992.1\|1654824_1655031_+	membrane protein	I6RSI5	Salmonella_phage	1.1e-31	100.0
SQH92993.1\|1655045_1655198_+	Uncharacterised protein	A0A2H4FWM4	Salmonella_phage	6.8e-20	100.0
SQH92994.1\|1655209_1655530_+	Uncharacterised protein	I6R992	Salmonella_phage	1.4e-22	59.4
SQH92995.1\|1655533_1655740_+	Uncharacterised protein	I1TEG6	Salmonella_phage	2.7e-35	98.5
SQH92996.1\|1655794_1656019_+	restriction alleviation and modification protein	NA	NA	NA	NA
SQH92997.1\|1655975_1656422_+	prophage protein	A0A1R3Y605	Salmonella_virus	6.6e-79	98.0
SQH92998.1\|1656891_1657173_+	Protein of uncharacterised function (DUF1364)	A0A0M3ULJ7	Salmonella_phage	4.2e-47	98.9
SQH92999.1\|1657169_1657565_+	endodeoxyribonuclease RUS	A0A0M4REJ2	Salmonella_phage	1.1e-69	96.9
SQH93000.1\|1657561_1657765_+	protein ninH	A0A1V0E5I5	Salmonella_phage	9.4e-33	98.5
SQH93001.1\|1657745_1657925_+	protein Niprotein NZ	A0A1V0E5I7	Salmonella_phage	7.8e-23	96.6
SQH93002.1\|1657921_1658695_+	antitermination protein	Q76H66	Enterobacteria_phage	8.4e-130	96.9
SQH93003.1\|1659118_1659445_+\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
SQH93004.1\|1659428_1659866_+	phage lysozyme	Q5G8R3	Enterobacteria_phage	8.2e-74	97.9
SQH93005.1\|1659862_1660333_+\|lysis	bacteriophage lysis protein	H6WRZ5	Salmonella_phage	4.5e-62	86.6
SQH93006.1\|1660549_1661080_+	phage protein	A0A2H4FQV0	Salmonella_phage	5.6e-93	99.4
SQH93007.1\|1661336_1661579_+	Orf80	A0A0M4R322	Salmonella_phage	7.5e-37	100.0
SQH93008.1\|1661582_1661972_+	Uncharacterised protein	Q76H27	Enterobacteria_phage	3.6e-73	97.7
SQH93009.1\|1661971_1662478_+	Uncharacterised protein	Q76H26	Enterobacteria_phage	4.7e-49	64.3
SQH93010.1\|1662483_1662972_+\|terminase	terminase small subunit	A8CGG1	Salmonella_phage	2.9e-88	100.0
SQH93011.1\|1662949_1664449_+\|terminase	putative terminase large subunit	A0A192Y824	Salmonella_phage	5.3e-306	99.4
SQH93012.1\|1664452_1664953_-	endonuclease	A0A0M4R2Z1	Salmonella_phage	2.5e-95	100.0
SQH93013.1\|1665001_1667179_+\|portal	portal protein	A0A0M4RCZ3	Salmonella_phage	0.0e+00	98.3
SQH93014.1\|1667192_1668104_+	scaffolding protein	A0A192Y6T4	Salmonella_phage	4.9e-161	100.0
SQH93015.1\|1668103_1669396_+\|coat	coat protein	C6ZR10	Salmonella_phage	7.2e-243	99.5
SQH93016.1\|1669436_1669997_+	prophage protein	I6S1J7	Salmonella_phage	7.0e-102	95.7
SQH93017.1\|1669980_1670481_+	Gp4	I6RSF6	Salmonella_phage	3.7e-86	96.4
SQH93018.1\|1670440_1671859_+	DNA stabilization protein	I1TEJ1	Salmonella_phage	1.2e-270	97.0
SQH93019.1\|1671862_1672501_+	packaged DNA stabilization protein gp26	A8CGD2	Salmonella_phage	8.0e-86	95.8
SQH93020.1\|1672500_1672980_+	Protein of uncharacterised function (DUF2824)	Q2A0B3	Sodalis_phage	1.4e-63	73.4
SQH93021.1\|1672954_1673632_+	putative DNA transfer protein	G5DA80	Enterobacteria_phage	9.8e-58	68.2
SQH93022.1\|1673641_1674982_+	protein 12	A0A0M5M1J8	Salmonella_phage	5.3e-164	73.8
SQH93023.1\|1674966_1677111_+	Uncharacterised protein	A0A0A0P1R1	Enterobacteria_phage	2.1e-45	28.4
SQH93024.1\|1677549_1677864_-	regulatory protein	H6WRU6	Salmonella_phage	8.9e-30	62.4
SQH93025.1\|1677972_1678134_+	Uncharacterised protein	A0A077KAX5	Edwardsiella_phage	7.7e-22	96.2
SQH93026.1\|1678123_1678990_+	Putative cytoplasmic protein	B6SD57	Bacteriophage	7.8e-68	52.5
SQH93027.1\|1679062_1679809_+	phage-like protein	A0A0P0ZDC0	Stx2-converting_phage	2.0e-64	57.1
SQH93028.1\|1679865_1680114_-	Mnt	E7C9U8	Salmonella_phage	7.3e-27	84.2
SQH93029.1\|1680249_1682451_+\|tail	Bifunctional tail protein Includes: Tailspike-protein; TSP; Includes: RecName: Full=Endorhamnosidase;Endo-1,3-alpha-L-rhamnosidase	K4FBU1	Escherichia_phage	2.1e-109	37.7
SQH93030.1\|1682513_1684475_-	transferase	A0A193GZ69	Enterobacter_phage	2.6e-71	32.4
SQH93031.1\|1684601_1685657_-	Tyrosine recombinase xerD	C6ZR22	Salmonella_phage	8.9e-199	96.0
SQH93032.1\|1686084_1687026_-	putative transport	E7DYY8	Enterobacteria_phage	4.9e-148	88.5

DBSCAN-SWA_4

1922750 : 1932767

Enterobacteria_phage(50.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH93248.1\|1922750_1923698_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-23	30.8
SQH93249.1\|1923681_1924413_+	putative permease transmembrane component	NA	NA	NA	NA
SQH93250.1\|1924393_1924501_-	membrane protein	NA	NA	NA	NA
SQH93251.1\|1924560_1925292_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
SQH93252.1\|1925514_1927200_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	2.9e-276	90.6
SQH93253.1\|1927196_1927916_+	two-component system response regulator	NA	NA	NA	NA
SQH93254.1\|1927962_1928433_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	8.0e-75	90.4
SQH93255.1\|1928584_1929043_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.9e-55	74.5
SQH93256.1\|1929318_1929843_+	DNA-binding protein	A0A1B1P776	Bacillus_phage	5.3e-11	30.5
SQH93257.1\|1929923_1930682_+\|transposase	transposase IS3	A0A2I6AZV9	Macacine_betaherpesvirus	9.9e-75	68.7
SQH93258.1\|1930733_1932767_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	2.8e-55	27.6

DBSCAN-SWA_5

2046759 : 2054542

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH93342.1\|2046759_2048025_+\|transposase	transposase IS1113	A0A218MNI5	uncultured_virus	3.5e-48	49.2
SQH93343.1\|2048081_2048330_-	virulence protein MsgA	S4TND2	Salmonella_phage	1.3e-15	69.0
SQH93344.1\|2048775_2049081_-	Uncharacterized protein yedK	A0A2H4J5W2	uncultured_Caudovirales_phage	2.9e-17	44.2
SQH93345.1\|2049615_2051892_+	thiosulfate reductase	A0A077SK27	Escherichia_phage	1.6e-35	26.6
SQH93346.1\|2051906_2052485_+	thiosulfate reductase electron transport protein PhsB	A0A077SL61	Escherichia_phage	1.5e-22	37.6
SQH93347.1\|2052481_2053246_+	thiosulfate reductase cytochrome b subunit	NA	NA	NA	NA
SQH93348.1\|2053375_2054542_+	penicillin-binding protein	B6DZZ7	Stx2-converting_phage	4.0e-200	87.9

DBSCAN-SWA_6

2388189 : 2433141

Stx2-converting_phage(27.78%)

protease,tail,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH93677.1\|2388189_2389059_+\|tRNA	S-adenosylmethionine tRNA ribosyltransferase	NA	NA	NA	NA
SQH93678.1\|2389066_2389687_+	YciO family	NA	NA	NA	NA
SQH93679.1\|2389787_2390663_+	pseudouridine synthase	NA	NA	NA	NA
SQH93680.1\|2390758_2391349_-	COB(I) alamin adenosyltransferase	NA	NA	NA	NA
SQH93681.1\|2391345_2392107_-	oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.8e-07	22.7
SQH93682.1\|2392350_2393391_+\|protease	putative protease sohB	A0A2H4UUF9	Bodo_saltans_virus	7.3e-20	30.1
SQH93683.1\|2393432_2393684_-	Protein yciN	NA	NA	NA	NA
SQH93684.1\|2394086_2396684_+	DNA topoisomerase 1	A0A2K9L5F8	Tupanvirus	1.1e-88	35.6
SQH93685.1\|2397019_2397994_+	CysB family transcriptional regulator	NA	NA	NA	NA
SQH93686.1\|2398298_2398427_+	Uncharacterised protein	NA	NA	NA	NA
SQH93687.1\|2398983_2401659_+	aconitate hydratase 1	NA	NA	NA	NA
SQH93688.1\|2401714_2402305_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.9e-42	48.4
SQH93689.1\|2402500_2403265_+	phosphatidylglycerophosphatase B	NA	NA	NA	NA
SQH93690.1\|2403414_2403723_+	Inner membrane protein yciS	NA	NA	NA	NA
SQH93691.1\|2403729_2404899_+	Heat shock (predicted periplasmic) proteinYciM precursor	NA	NA	NA	NA
SQH93692.1\|2405089_2405827_+	Orotidine 5'-phosphate decarboxylase	NA	NA	NA	NA
SQH93693.1\|2405826_2406153_+	translation initiaiton factor	NA	NA	NA	NA
SQH93694.1\|2406271_2406490_-	osmotically inducible lipoprotein B	NA	NA	NA	NA
SQH93695.1\|2406748_2407501_-	regulatory protein	NA	NA	NA	NA
SQH93696.1\|2407588_2407768_-	conserved domain protein	NA	NA	NA	NA
SQH93697.1\|2407848_2408433_+	DNA-binding protein	A0A1B1P776	Bacillus_phage	7.7e-11	30.5
SQH93698.1\|2408513_2409272_+\|transposase	transposase IS3	A0A2I6AZV9	Macacine_betaherpesvirus	9.9e-75	68.7
SQH93699.1\|2409339_2411322_-	RNase II stability modulator	G3MA91	Bacillus_virus	5.9e-18	32.6
SQH93700.1\|2411582_2413517_-	exoribonuclease II	A0A2H4UVB7	Bodo_saltans_virus	1.9e-05	23.5
SQH93701.1\|2413605_2414736_-	putative cytoplasmic protein	NA	NA	NA	NA
SQH93702.1\|2414935_2415724_-	enoyl-(acyl carrier protein) reductase	NA	NA	NA	NA
SQH93703.1\|2416005_2416107_-	Uncharacterised protein	NA	NA	NA	NA
SQH93704.1\|2416326_2417640_+	putative inner membrane protein	NA	NA	NA	NA
SQH93705.1\|2418165_2418873_+	Cyclic di-GMP phosphodiesterase YhjH	NA	NA	NA	NA
SQH93706.1\|2418888_2419695_-	peptide transport system ATP-binding protein SapF	G3M9Y6	Bacillus_virus	7.9e-14	27.4
SQH93707.1\|2419696_2420689_-	Peptide transport system ATP-binding protein sapD	NA	NA	NA	NA
SQH93708.1\|2420688_2421579_-	peptide transporter permease SapC	NA	NA	NA	NA
SQH93709.1\|2422015_2422165_+\|transposase	transposase	NA	NA	NA	NA
SQH93710.1\|2422357_2423374_-\|transposase	transposase IS116	NA	NA	NA	NA
SQH93711.1\|2424662_2425340_-	pathogenicity island 2 effector protein SseB	NA	NA	NA	NA
SQH93712.1\|2426163_2426550_+\|transposase	transposase	B6DZU5	Stx2-converting_phage	3.1e-56	86.0
SQH93713.1\|2426546_2426894_+\|transposase	putative transposase subunit	A0A0P0ZDM8	Stx2-converting_phage	1.8e-60	96.5
SQH93714.1\|2426943_2427660_+\|transposase	transposase IS66	A0A0P0ZBS5	Stx2-converting_phage	6.4e-108	92.3
SQH93715.1\|2427599_2428481_+	issfl4 orf3	A0A0P0ZEB3	Stx2-converting_phage	9.5e-154	88.7
SQH93716.1\|2428679_2429153_-	GogA	Q9MBM2	Phage_Gifsy-1	8.6e-85	95.5
SQH93717.1\|2429609_2430155_+	Phage endolysin	T1SBJ3	Salmonella_phage	3.1e-70	72.2
SQH93718.1\|2430151_2430583_+\|tail	phage-tail assembly protein	NA	NA	NA	NA
SQH93719.1\|2430857_2431499_+	type III secretion system effector protein	B6DZZ5	Stx2-converting_phage	1.0e-16	33.7
SQH93720.1\|2431713_2432409_-	Chimeric type III secretion system effector protein	A5LH48	Enterobacteria_phage	1.0e-49	55.3
SQH93721.1\|2432427_2432742_-	Chimeric type III secretion system effector protein	NA	NA	NA	NA
SQH93722.1\|2432826_2433141_+	Phage DNA invertase	S4TTF2	Salmonella_phage	6.2e-07	93.1

DBSCAN-SWA_7

2911003 : 2972303

Enterobacteria_phage(27.78%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH94180.1\|2911003_2911762_+\|transposase	transposase IS3	A0A2I6AZV9	Macacine_betaherpesvirus	2.9e-74	68.2
SQH94181.1\|2911926_2912457_+	hydrogenase	A0A0U2QLA7	Escherichia_phage	4.8e-36	70.2
SQH94182.1\|2912538_2913582_-	putative cytoplasmic protein	NA	NA	NA	NA
SQH94183.1\|2914708_2914882_+	Uncharacterised protein	NA	NA	NA	NA
SQH94184.1\|2915517_2915862_+	Periplasmic lysozyme inhibitor of c-typelysozyme	NA	NA	NA	NA
SQH94185.1\|2917073_2917631_-	membrane protein	Q9LA63	Enterobacterial_phage	1.5e-16	33.7
SQH94186.1\|2918463_2918727_+	virulence protein PagD	NA	NA	NA	NA
SQH94187.1\|2919615_2920137_+	EnvE	NA	NA	NA	NA
SQH94188.1\|2920327_2920567_+	virulence protein	K7P6H1	Enterobacteria_phage	1.7e-33	89.9
SQH94189.1\|2920661_2924822_-\|protease	hemoglobin protease	Q9LA54	Enterobacteria_phage	5.3e-303	41.8
SQH94190.1\|2925306_2927391_+	phage-like protein	NA	NA	NA	NA
SQH94191.1\|2927711_2928113_+	Inhibitor of g-type lysozyme	NA	NA	NA	NA
SQH94192.1\|2928208_2928460_+	Uncharacterised protein	NA	NA	NA	NA
SQH94193.1\|2928655_2928946_+	Bor protein	C6ZCX3	Enterobacteria_phage	1.2e-33	71.9
SQH94194.1\|2929434_2930382_+\|protease	outer membrane protease	NA	NA	NA	NA
SQH94195.1\|2930630_2933777_+	phage-like protein	NA	NA	NA	NA
SQH94196.1\|2933994_2934378_-	Uncharacterised protein	NA	NA	NA	NA
SQH94197.1\|2934428_2935019_+\|transposase	transposase IS4 family protein	S5FM71	Shigella_phage	3.2e-04	57.8
SQH94198.1\|2935344_2936532_-	Uncharacterised protein	NA	NA	NA	NA
SQH94199.1\|2936831_2937104_+	Uncharacterized protein yedK	A0A2H4J5W2	uncultured_Caudovirales_phage	7.0e-15	44.8
SQH94200.1\|2937486_2938371_+	Chimeric type III secretion system effector protein	A5LH48	Enterobacteria_phage	4.2e-77	52.7
SQH94201.1\|2938585_2939248_-	type III secretion system effector protein	B6DZC0	Enterobacteria_phage	1.6e-33	38.2
SQH94202.1\|2939465_2939597_-	Uncharacterised protein	NA	NA	NA	NA
SQH94203.1\|2940332_2940770_-\|transposase	transposase for IS200	NA	NA	NA	NA
SQH94204.1\|2940936_2942187_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.0e-19	90.7
SQH94205.1\|2942286_2943024_+	putative ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA
SQH94206.1\|2943020_2943350_+	putative secreted protein	NA	NA	NA	NA
SQH94207.1\|2943361_2943823_+	mutT family protein	NA	NA	NA	NA
SQH94208.1\|2943876_2944983_+\|tRNA	tRNA-specific 2-thiouridylase MnmA	NA	NA	NA	NA
SQH94209.1\|2945069_2945711_+	lysogenization regulator	NA	NA	NA	NA
SQH94210.1\|2945714_2947085_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	8.5e-109	45.5
SQH94211.1\|2947208_2947883_+	transcriptional regulator PhoP,regulator of virulence determinants	NA	NA	NA	NA
SQH94212.1\|2947882_2949346_+	sensor protein PhoQ, regulator of virulence determinants	NA	NA	NA	NA
SQH94213.1\|2949426_2950548_+	protein ycfD	NA	NA	NA	NA
SQH94214.1\|2950587_2951802_-	Uncharacterised protein	NA	NA	NA	NA
SQH94215.1\|2951934_2953164_-	peptidase T	NA	NA	NA	NA
SQH94216.1\|2953414_2954551_+	spermidine/putrescine transport ATP-binding protein PotA	G3M9Y6	Bacillus_virus	2.1e-28	34.0
SQH94217.1\|2954534_2955398_+	spermidine/putrescine ABC transporter membrane protein	Q6GZ02	Mycoplasma_phage	2.0e-10	26.2
SQH94218.1\|2955851_2956058_+	effector protein SifA	NA	NA	NA	NA
SQH94219.1\|2956010_2957213_-	Transposase for insertion sequence element ISRM3	A0A218MNI5	uncultured_virus	1.3e-76	71.0
SQH94220.1\|2957455_2958169_+	effector protein SifA	NA	NA	NA	NA
SQH94221.1\|2958485_2959265_+	Spermidine Putrescine ABC transporter permease component potC	NA	NA	NA	NA
SQH94222.1\|2959289_2960336_+	spermidine/putrescine-binding periplasmic protein	NA	NA	NA	NA
SQH94223.1\|2960402_2961389_-	invertase	NA	NA	NA	NA
SQH94224.1\|2961628_2962450_-	NAD-dependent protein deacetylase of SIR2 family	A0A2I7S9Y2	Vibrio_phage	2.8e-22	34.0
SQH94225.1\|2962468_2963380_-	ROK family protein	NA	NA	NA	NA
SQH94226.1\|2963408_2964653_-	ABC transporter	NA	NA	NA	NA
SQH94227.1\|2964652_2965354_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-35	40.7
SQH94228.1\|2965346_2966546_-	outer membrane-specific lipoprotein transporter subunit LolC	NA	NA	NA	NA
SQH94229.1\|2966883_2970330_+	transcription-repair coupling factor (TrcF)	NA	NA	NA	NA
SQH94230.1\|2970477_2971443_+	LD-transpeptidase YcfS	NA	NA	NA	NA
SQH94231.1\|2971544_2972303_-\|transposase	transposase IS3	A0A2I6AZV9	Macacine_betaherpesvirus	2.9e-74	68.2

DBSCAN-SWA_8

3102273 : 3142416

Vibrio_phage(18.6%)

head,protease,integrase,plate,tail

attL 3138173:3138187|attR 3144654:3144668

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH94366.1\|3102273_3102513_-\|tail	Putative prophage tail fibre C-terminus	A0A0P0ZEF0	Stx2-converting_phage	2.0e-18	56.2
SQH94367.1\|3102499_3103138_-\|tail	Putative prophage tail fibre C-terminus	A0A2I7RBK1	Vibrio_phage	8.1e-30	40.1
SQH94368.1\|3103130_3103853_-	bacteriophage protein	A0A2P9HXZ0	Yersinia_phage	1.8e-65	51.1
SQH94369.1\|3103849_3105031_-	bacteriophage protein	A0A2I7QS90	Vibrio_phage	3.5e-103	48.2
SQH94370.1\|3105014_3105395_-	Uncharacterised protein	A0A2H5BFY4	Vibrio_phage	1.0e-24	56.9
SQH94371.1\|3105391_3105988_-\|plate	baseplate protein	A0A2P9HY74	Yersinia_phage	2.2e-45	63.3
SQH94372.1\|3106056_3107412_-	Uncharacterised protein	A0A223LJ40	Erwinia_phage	2.5e-129	55.1
SQH94373.1\|3107414_3107717_-	Uncharacterised protein	NA	NA	NA	NA
SQH94374.1\|3107713_3108292_-\|tail	Phage tail fiber protein	Q687E6	Enterobacteria_phage	1.2e-24	58.3
SQH94375.1\|3108393_3108486_-	Uncharacterised protein	NA	NA	NA	NA
SQH94376.1\|3108551_3109496_-	Uncharacterised protein	A0A2P9HXK2	Yersinia_phage	1.8e-70	47.1
SQH94377.1\|3109495_3109831_-	Uncharacterised protein	A0A2I7RBP0	Vibrio_phage	2.5e-30	53.8
SQH94378.1\|3109838_3110639_-	Uncharacterised protein	A0A2P9HXI6	Yersinia_phage	4.4e-49	42.9
SQH94379.1\|3110635_3112438_-	putative bacteriophage protein	A0A2I7QS75	Vibrio_phage	1.9e-87	46.3
SQH94380.1\|3112424_3112583_-	Uncharacterised protein	A0A2P9HXJ0	Yersinia_phage	9.3e-12	68.0
SQH94381.1\|3112591_3113020_-	Uncharacterised protein	A0A2P9HXM8	Yersinia_phage	7.6e-24	45.7
SQH94382.1\|3113029_3113461_-	Uncharacterised protein	A0A2P9HXY3	Yersinia_phage	1.5e-32	53.1
SQH94383.1\|3113471_3114974_-	hypothetical prophage protein	A0A2I7QS67	Vibrio_phage	1.4e-152	57.2
SQH94384.1\|3114974_3115463_-	Uncharacterised protein	A0A2I7QS82	Vibrio_phage	1.7e-40	56.1
SQH94385.1\|3115459_3115816_-	Uncharacterised protein	NA	NA	NA	NA
SQH94386.1\|3115812_3116385_-	Mu-like prophage protein gpG	A0A2I7QS63	Vibrio_phage	1.1e-25	38.1
SQH94387.1\|3116402_3116765_-	Uncharacterised protein	Q7Y5T9	Haemophilus_phage	6.0e-14	41.4
SQH94388.1\|3116779_3117748_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQH94389.1\|3117751_3118243_-	Uncharacterised protein	NA	NA	NA	NA
SQH94390.1\|3118245_3119394_-\|head,protease	head protein/prohead protease	A0A2H4J159	uncultured_Caudovirales_phage	4.6e-15	33.5
SQH94391.1\|3119397_3120249_-	phage Mu protein F like protein	Q7Y5U5	Haemophilus_phage	1.1e-29	33.5
SQH94392.1\|3120226_3121549_-	Phage-associated protein	L7TRA1	Rhizobium_phage	1.5e-22	25.2
SQH94393.1\|3121548_3122967_-	phage uncharacterized protein, C-terminal domain	A0A2K9V3I6	Faecalibacterium_phage	9.8e-84	41.2
SQH94394.1\|3122932_3123919_-	Terminase small subunit	I6X6R5	Burkholderia_virus	1.8e-44	46.1
SQH94395.1\|3123979_3124531_-	Uncharacterised protein	NA	NA	NA	NA
SQH94396.1\|3124585_3125107_-\|tail	phage-tail assembly protein	NA	NA	NA	NA
SQH94397.1\|3125103_3125730_-	Phage endolysin	Q858F0	Salmonella_phage	3.9e-93	79.2
SQH94398.1\|3125729_3126011_-	prophage membrane protein	K7PKN9	Enterobacterial_phage	1.7e-35	79.6
SQH94399.1\|3125997_3126387_-	prophage membrane protein	K7PHB9	Enterobacterial_phage	1.4e-40	71.0
SQH94400.1\|3126961_3127213_+	Uncharacterised protein	NA	NA	NA	NA
SQH94401.1\|3127199_3127394_-	Uncharacterised protein	NA	NA	NA	NA
SQH94402.1\|3127449_3127674_-	Uncharacterised protein	NA	NA	NA	NA
SQH94403.1\|3127919_3128369_+	Gifsy-2 prophage protein	NA	NA	NA	NA
SQH94404.1\|3128505_3128631_-	Gifsy-2 prophage protein	NA	NA	NA	NA
SQH94405.1\|3128916_3129495_-	putative bacteriophage protein	A0A0U2S606	Escherichia_phage	2.4e-44	52.0
SQH94406.1\|3129491_3129785_-	putative bacteriophage protein	A0A0U2KD41	Escherichia_phage	2.1e-33	65.3
SQH94407.1\|3129781_3130378_-	gifsy-2 prophage protein	H9C173	Pectobacterium_phage	6.5e-82	74.2
SQH94408.1\|3130446_3130638_-	Uncharacterised protein	NA	NA	NA	NA
SQH94409.1\|3130819_3131158_-	Uncharacterised protein	A0A193GYX4	Enterobacter_phage	3.7e-50	86.6
SQH94410.1\|3131157_3131328_-	methyltransferase	I6S1S6	Salmonella_phage	1.1e-05	87.5
SQH94411.1\|3131324_3131927_-	adenine methylase	G9L699	Escherichia_phage	2.3e-98	87.3
SQH94412.1\|3131919_3132168_-	Uncharacterised protein	NA	NA	NA	NA
SQH94413.1\|3132171_3132852_-	Uncharacterised protein	NA	NA	NA	NA
SQH94414.1\|3132889_3134278_-	replicative DNA helicase	Q8HA30	Enterobacteria_phage	1.2e-105	46.6
SQH94415.1\|3134274_3135255_-	replication protein	H9C164	Pectobacterium_phage	4.0e-44	79.6
SQH94416.1\|3135257_3135482_-	Uncharacterised protein	H9C163	Pectobacterium_phage	1.0e-08	44.7
SQH94417.1\|3135504_3136065_-	Protein of uncharacterised function (DUF1019)	H9C162	Pectobacterium_phage	9.0e-25	50.4
SQH94418.1\|3136015_3136219_-	regulatory protein cro (Antirepressor)	K7PHK4	Enterobacteria_phage	4.0e-07	46.6
SQH94419.1\|3136297_3136699_+	Phage repressor protein C2	I6PD69	Cronobacter_phage	2.5e-37	55.6
SQH94420.1\|3137352_3137676_+	Uncharacterised protein	NA	NA	NA	NA
SQH94421.1\|3137683_3137929_+	Uncharacterised protein	A0A1B1W282	Salmonella_phage	3.5e-13	53.8
SQH94422.1\|3137958_3140232_+	Exodeoxyribonuclease VIII	H9C157	Pectobacterium_phage	1.5e-102	34.8
3138173:3138187	attL	NA	NA	NA	NA
SQH94423.1\|3140228_3140783_+	Siphovirus Gp157	H9C156	Pectobacterium_phage	7.5e-48	59.3
SQH94424.1\|3140785_3140968_+	Uncharacterised protein	NA	NA	NA	NA
SQH94425.1\|3141180_3141405_+	phage-like protein	NA	NA	NA	NA
SQH94426.1\|3141405_3142416_+\|integrase	site-specific recombinase, phage integrase family protein	A0A192Y7M7	Salmonella_phage	7.7e-91	53.0
3144654:3144668	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3173596 : 3181034

Escherichia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH94456.1\|3173596_3176209_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.4e-19	22.2
SQH94457.1\|3176618_3176858_+	virulence protein	K7P6H1	Enterobacteria_phage	7.2e-32	86.1
SQH94458.1\|3177069_3177234_-\|transposase	transposase	NA	NA	NA	NA
SQH94459.1\|3177731_3178550_+	toxin	A5LH53	Enterobacteria_phage	2.5e-63	50.7
SQH94460.1\|3178617_3178995_+	Protein of uncharacterised function (DUF1353)	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
SQH94461.1\|3179143_3179686_-	Predicted lysozyme (DUF847)	A0A0U2S643	Escherichia_phage	8.1e-71	67.0
SQH94462.1\|3179876_3180605_-	Pertussis toxin, subunit 1 subfamily	A0A0U2KD26	Escherichia_phage	7.8e-61	51.6
SQH94463.1\|3180620_3181034_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	2.4e-19	37.7

DBSCAN-SWA_10

3185877 : 3198705

Salmonella_phage(30.0%)

tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH94465.1\|3185877_3186912_+	Uncharacterised protein	A4KWR9	Enterobacteria_phage	4.3e-73	41.1
SQH94466.1\|3187736_3188939_-	Transposase for insertion sequence element ISRM3	A0A218MNI5	uncultured_virus	1.3e-76	71.0
SQH94467.1\|3188963_3189398_-	Uncharacterised protein	NA	NA	NA	NA
SQH94468.1\|3189510_3189753_-\|tail	Putative prophage tail fibre C-terminus	A0A0P0ZEF0	Stx2-converting_phage	3.0e-17	55.1
SQH94469.1\|3189730_3189895_-	Uncharacterised protein	NA	NA	NA	NA
SQH94470.1\|3189907_3192652_-	host-specificity protein	A0A0K2FI38	Escherichia_phage	6.1e-284	68.1
SQH94471.1\|3192654_3193539_+	gifsy-2 prophage RecT	A0A2I7RQF1	Vibrio_phage	2.6e-42	43.4
SQH94472.1\|3193581_3193821_+	putative bacteriophage protein	S4TR31	Salmonella_phage	4.4e-37	97.5
SQH94473.1\|3193998_3194145_+	Putative bacteriophage protein	A0A1B5FPC2	Escherichia_phage	4.0e-17	81.2
SQH94474.1\|3194152_3194446_+	excisionase	S4TND0	Salmonella_phage	5.9e-36	86.2
SQH94475.1\|3194445_3195738_+	Integrase	S4TSP2	Salmonella_phage	7.2e-235	91.4
SQH94476.1\|3195932_3197135_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
SQH94477.1\|3197304_3198705_+\|tRNA	asparaginyl-tRNA synthetase	A0A2K9V902	Bandra_megavirus	2.6e-81	35.9

DBSCAN-SWA_11

3680787 : 3740363

Bacillus_phage(23.08%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH94897.1\|3680787_3681705_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
SQH94898.1\|3681701_3682154_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
SQH94899.1\|3682154_3682571_-	copper efflux regulator	NA	NA	NA	NA
SQH94900.1\|3682680_3685182_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	1.0e-112	37.1
SQH94901.1\|3686316_3686796_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
SQH94902.1\|3687061_3688048_+	invertase	NA	NA	NA	NA
SQH94903.1\|3688130_3689783_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
SQH94904.1\|3689955_3691176_+	fosmidomycin resistance protein	NA	NA	NA	NA
SQH94905.1\|3691390_3693067_+	transport protein	NA	NA	NA	NA
SQH94906.1\|3693115_3694420_-	inosine/guanosine kinase	NA	NA	NA	NA
SQH94907.1\|3694572_3695544_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	5.1e-15	27.4
SQH94908.1\|3695540_3696503_-	ferrochelatase	NA	NA	NA	NA
SQH94909.1\|3696704_3697349_-	adenylate kinase	NA	NA	NA	NA
SQH94910.1\|3697581_3699456_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.3e-115	36.9
SQH94911.1\|3699566_3700172_-	recombination protein RecR	NA	NA	NA	NA
SQH94912.1\|3700171_3700501_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQH94913.1\|3702588_3703140_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
SQH94914.1\|3703292_3703670_-	Inner membrane protein YbaN	NA	NA	NA	NA
SQH94915.1\|3703750_3704266_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
SQH94916.1\|3704279_3704447_+	Putative inner membrane protein	NA	NA	NA	NA
SQH94917.1\|3704516_3704972_+	Transposase_31	Q2A0A7	Sodalis_phage	3.1e-39	54.9
SQH94918.1\|3705149_3705641_+\|transposase	Putative transposase	Q2A0A7	Sodalis_phage	7.9e-17	48.0
SQH94919.1\|3705682_3709045_-	integral membrane protein AefA	NA	NA	NA	NA
SQH94920.1\|3709163_3709817_-	potential acrAB operon repressor	NA	NA	NA	NA
SQH94921.1\|3709958_3711152_+	acriflavin resistance protein A	NA	NA	NA	NA
SQH94922.1\|3711174_3714324_+	acriflavin resistance protein B	NA	NA	NA	NA
SQH94923.1\|3714821_3715196_+	Hha toxicity attenuator	NA	NA	NA	NA
SQH94924.1\|3715223_3715442_+	hemolysin expression modulating protein	NA	NA	NA	NA
SQH94925.1\|3715620_3716172_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQH94926.1\|3716287_3716758_+	Putative inner membrane protein	NA	NA	NA	NA
SQH94927.1\|3716958_3717219_-	50S ribosomal protein L31	NA	NA	NA	NA
SQH94928.1\|3717443_3718994_+	Uncharacterized protein ylaB	NA	NA	NA	NA
SQH94929.1\|3719302_3719614_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
SQH94930.1\|3719646_3720216_-	lipoprotein	NA	NA	NA	NA
SQH94931.1\|3720430_3721291_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQH94932.1\|3721390_3722677_-	ammonium transporter	NA	NA	NA	NA
SQH94933.1\|3722708_3723047_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQH94934.1\|3723259_3725041_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	1.7e-37	26.3
SQH94935.1\|3725033_3726806_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
SQH94936.1\|3726846_3727305_-	transcriptional regulator	NA	NA	NA	NA
SQH94937.1\|3727417_3728473_+	lyase	NA	NA	NA	NA
SQH94938.1\|3728522_3729341_-	HMP-PP phosphatase	NA	NA	NA	NA
SQH94939.1\|3729441_3731142_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQH94940.1\|3731206_3731902_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.7e-87	68.0
SQH94941.1\|3732007_3732406_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
SQH94942.1\|3732509_3732884_-	competence protein ComEA	NA	NA	NA	NA
SQH94943.1\|3733033_3734905_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQH94944.1\|3735195_3735468_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
SQH94945.1\|3735676_3738031_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	7.2e-225	52.5
SQH94946.1\|3738216_3739488_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.5e-131	56.5
SQH94947.1\|3739739_3740363_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

DBSCAN-SWA_12

3875430 : 3924173

Salmonella_phage(59.18%)

holin,head,protease,integrase,tail

attL 3873322:3873354|attR 3920295:3920327

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3873322:3873354	attL	NA	NA	NA	NA
SQH95068.1\|3875430_3876201_+	N-acetylmuramoyl-L-alanine amidase	A0A076YN96	Rhizobium_phage	1.7e-10	28.3
SQH95069.1\|3876397_3876724_-\|tail	Phage tail fiber	E5G6P1	Salmonella_phage	5.6e-35	66.7
SQH95070.1\|3877907_3878915_+	phage protein	Q8HAB2	Salmonella_phage	2.7e-181	90.4
SQH95071.1\|3878915_3879065_-\|tail	major tail sheath domain protein	S4TRX2	Salmonella_phage	1.1e-06	70.7
SQH95072.1\|3879763_3881293_-	gp19	A0A1B0VFW4	Salmonella_phage	1.4e-83	87.2
SQH95073.1\|3881292_3881973_-	bacteriophage protein	A0A0M5M1K4	Salmonella_phage	8.1e-129	98.7
SQH95074.1\|3881969_3883169_-	bacteriophage protein	A0A0M4RD32	Salmonella_phage	1.1e-213	97.5
SQH95075.1\|3883169_3883523_-	bacteriophage protein	A0A0M4R339	Salmonella_phage	2.1e-59	97.4
SQH95076.1\|3883522_3884275_-	bacteriophage protein	A0A0M5M1K7	Salmonella_phage	4.7e-93	71.3
SQH95077.1\|3884497_3884863_+	Uncharacterised protein	NA	NA	NA	NA
SQH95078.1\|3884882_3885230_-	putative secreted protein	A0A0M4RTY3	Salmonella_phage	1.2e-22	69.2
SQH95079.1\|3885226_3886294_-	bacteriophage protein	A0A0M4QX01	Salmonella_phage	1.2e-171	90.4
SQH95080.1\|3886296_3886599_-	bacteriophage protein	A0A0M4R5B7	Salmonella_phage	4.2e-53	100.0
SQH95081.1\|3886598_3887174_-	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	5.3e-97	99.5
SQH95082.1\|3887173_3889183_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	0.0e+00	99.4
SQH95083.1\|3889360_3889813_-	bacteriophage protein	A0A0M4S6U8	Salmonella_phage	3.2e-65	81.3
SQH95084.1\|3889816_3890260_-	bacteriophage protein	A0A2H4J619	uncultured_Caudovirales_phage	6.0e-56	74.5
SQH95085.1\|3890272_3891418_-	bacteriophage protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.2e-164	75.3
SQH95086.1\|3891421_3891985_-	bacteriophage protein	A0A0M4R331	Salmonella_phage	4.7e-82	78.7
SQH95087.1\|3891959_3892349_-	bacteriophage protein	A0A0M3ULK0	Salmonella_phage	9.2e-69	99.2
SQH95088.1\|3892335_3892890_-	bacteriophage protein	A0A0M4S631	Salmonella_phage	3.4e-93	98.4
SQH95089.1\|3892886_3893306_-	bacteriophage protein	A0A0M5M3S2	Salmonella_phage	1.4e-70	96.3
SQH95090.1\|3893259_3893628_-	bacteriophage protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
SQH95091.1\|3893669_3894611_-	bacteriophage protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
SQH95092.1\|3894622_3895120_-	bacteriophage protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
SQH95093.1\|3895124_3896357_-\|head,protease	head protein/prohead protease	A0A0M4R5A6	Salmonella_phage	1.6e-228	99.5
SQH95094.1\|3896371_3896980_-	putative bacteriophage protein	A0A0M4REK0	Salmonella_phage	6.4e-101	88.1
SQH95095.1\|3896993_3898463_-	Phage-associated protein	A0A0M4S6U1	Salmonella_phage	5.8e-281	99.4
SQH95096.1\|3898462_3900085_-	gp33 TerL	A0A0M5M1R6	Salmonella_phage	0.0e+00	98.3
SQH95097.1\|3900087_3900660_-	Terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	8.0e-61	68.5
SQH95098.1\|3900680_3901169_-	lysozyme	Q8HA85	Salmonella_phage	2.0e-73	92.5
SQH95099.1\|3901165_3901780_-	bacteriophage protein	Q8HA86	Salmonella_phage	4.5e-94	83.3
SQH95100.1\|3901782_3902130_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	4.4e-46	81.3
SQH95101.1\|3902608_3903043_-	phage antiterminator	B6SD39	Bacteriophage	4.5e-40	58.9
SQH95102.1\|3903035_3903374_-	Uncharacterised protein	NA	NA	NA	NA
SQH95103.1\|3903331_3905518_-	Predicted P-loop ATPase and inactivated derivatives	B6SCY1	Bacteriophage	1.7e-172	71.5
SQH95104.1\|3905521_3905734_-	regulatory protein Cro (antirepressor)	A0A0R6PHL1	Moraxella_phage	6.0e-06	42.9
SQH95105.1\|3905854_3906478_+	DNA-binding protein	A0A1I9KG86	Aeromonas_phage	1.1e-36	45.3
SQH95106.1\|3907018_3907543_+	Mobile element protein	C9EH97	Sodalis_phage	2.4e-40	48.3
SQH95107.1\|3907655_3907805_+	Uncharacterised protein	NA	NA	NA	NA
SQH95108.1\|3907801_3908704_+	Uncharacterised protein	NA	NA	NA	NA
SQH95109.1\|3908706_3910008_+	Protein of uncharacterised function (DUF2800)	B6SCX9	Bacteriophage	2.5e-134	56.3
SQH95110.1\|3910022_3910571_+	Protein of uncharacterised function (DUF2815)	Q775A5	Bordetella_phage	6.0e-66	64.8
SQH95111.1\|3910621_3911260_+	Uncharacterised protein	H6WRY3	Salmonella_phage	1.7e-75	70.5
SQH95112.1\|3911334_3913401_+	bifunctional 3'-5' exonuclease/DNA polymerase	Q775A3	Bordetella_phage	8.2e-273	67.4
SQH95113.1\|3913405_3913618_+	Uncharacterised protein	NA	NA	NA	NA
SQH95114.1\|3913614_3913818_+	Uncharacterised protein	NA	NA	NA	NA
SQH95115.1\|3913828_3914044_+	Uncharacterised protein	NA	NA	NA	NA
SQH95116.1\|3914044_3914524_+	DNA N-4 cytosine methyltransferase M.NgoMXV	H9C170	Pectobacterium_phage	1.9e-68	80.1
SQH95117.1\|3914526_3914796_+	putative phage related protein	B6SD64	Bacteriophage	7.9e-27	67.1
SQH95118.1\|3914822_3915056_-	Uncharacterised protein	NA	NA	NA	NA
SQH95119.1\|3915079_3915676_-	Uncharacterised protein	NA	NA	NA	NA
SQH95120.1\|3915732_3917124_+	phage-related DNA helicase	Q3LZN8	Bacteriophage	5.4e-212	73.7
SQH95121.1\|3917120_3917258_+	Arc-like DNA binding domain	NA	NA	NA	NA
SQH95122.1\|3917254_3917599_-	bacteriophage regulatory protein	NA	NA	NA	NA
SQH95123.1\|3917713_3917890_+	Uncharacterised protein	NA	NA	NA	NA
SQH95124.1\|3917950_3918634_+	Uncharacterized phage-encoded protein	B1GS65	Salmonella_phage	1.1e-16	48.0
SQH95125.1\|3918770_3918959_+	DNA-binding protein	NA	NA	NA	NA
SQH95126.1\|3918955_3920128_-\|integrase	prophage CPS-53 integrase	Q7M297	Enterobacteria_phage	2.0e-111	49.7
SQH95127.1\|3920472_3921723_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	8.0e-98	47.7
3920295:3920327	attR	NA	NA	NA	NA
SQH95128.1\|3921734_3922838_-	Glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
SQH95129.1\|3923120_3924173_+	outer membrane phosphoporin protein E	Q1MVN1	Enterobacteria_phage	2.3e-114	58.7

DBSCAN-SWA_13

4718614 : 4760735

Burkholderia_phage(27.78%)

plate,tail,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH95828.1\|4718614_4719613_-\|tRNA	tRNA dihydrouridine synthase A	NA	NA	NA	NA
SQH95829.1\|4719700_4721011_-	conjugative transfer protein	NA	NA	NA	NA
SQH95830.1\|4721257_4721773_+	zinc uptake regulation protein	NA	NA	NA	NA
SQH95831.1\|4721871_4722084_-	stress-response protein	NA	NA	NA	NA
SQH95832.1\|4722102_4722231_-	putative cytoplasmic protein	NA	NA	NA	NA
SQH95833.1\|4722212_4723538_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA
SQH95834.1\|4723717_4724326_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
SQH95835.1\|4724434_4724803_-	diacylglycerol kinase	NA	NA	NA	NA
SQH95836.1\|4724973_4727394_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
SQH95837.1\|4727504_4728377_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
SQH95838.1\|4728390_4728888_-	chorismate lyase	NA	NA	NA	NA
SQH95839.1\|4729068_4729986_-	maltose operon periplasmic protein	NA	NA	NA	NA
SQH95840.1\|4730149_4731508_-	maltoporin	NA	NA	NA	NA
SQH95841.1\|4731595_4732705_-	maltose/maltodextrin transport ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
SQH95842.1\|4733066_4734257_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA
SQH95843.1\|4734388_4735933_+	maltose transport inner membrane protein	NA	NA	NA	NA
SQH95844.1\|4735947_4736838_+	maltose transport inner membrane protein	NA	NA	NA	NA
SQH95845.1\|4737181_4738657_+	D-xylose transporter XylE	NA	NA	NA	NA
SQH95846.1\|4738702_4739113_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
SQH95847.1\|4739254_4741351_-	lipoprotein	NA	NA	NA	NA
SQH95848.1\|4741350_4742088_-	putative lipoprotein	NA	NA	NA	NA
SQH95849.1\|4742084_4742723_-	outer membrane lipoprotein	NA	NA	NA	NA
SQH95850.1\|4742786_4743032_-	YjbE secreted protein	NA	NA	NA	NA
SQH95851.1\|4743417_4743942_+	DNA-binding protein	A0A1B1P776	Bacillus_phage	5.3e-11	30.5
SQH95852.1\|4744022_4744781_+\|transposase	transposase IS3	A0A2I6AZV9	Macacine_betaherpesvirus	9.9e-75	68.7
SQH95853.1\|4744922_4746572_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
SQH95854.1\|4746960_4748310_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA
SQH95855.1\|4748444_4748792_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
SQH95856.1\|4749367_4749655_+	membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	48.1
SQH95857.1\|4749657_4750263_+	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	7.4e-57	57.8
SQH95858.1\|4750275_4750590_+	membrane protein	Q6QIC4	Burkholderia_phage	4.9e-20	49.1
SQH95859.1\|4750749_4751205_+	putative cytoplasmic protein	NA	NA	NA	NA
SQH95860.1\|4751201_4751399_+	gp12	Q6QIB1	Burkholderia_phage	5.1e-07	52.9
SQH95861.1\|4751388_4752804_+\|tail	tail protein	A4JWK5	Burkholderia_virus	6.3e-184	69.5
SQH95862.1\|4752803_4753328_+\|tail	tail protein	Q6QIA9	Burkholderia_phage	4.0e-67	69.0
SQH95863.1\|4753379_4753697_+	Uncharacterised protein	NA	NA	NA	NA
SQH95864.1\|4753878_4756164_+\|tail	tail protein	A4JWL0	Burkholderia_virus	9.3e-68	28.8
SQH95865.1\|4756163_4757117_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	4.2e-38	53.1
SQH95866.1\|4757116_4757326_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
SQH95867.1\|4757313_4758354_+	gp21	A4JWL3	Burkholderia_virus	3.0e-74	45.9
SQH95868.1\|4758363_4759086_+\|plate	baseplate protein	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
SQH95869.1\|4759250_4760210_+\|tail	phage tail fiber protein H	A0A0M3ULH6	Salmonella_phage	2.1e-37	42.9
SQH95870.1\|4760219_4760735_+\|tail	tail assembly chaperone gp38	A0A0U2QV64	Escherichia_phage	1.2e-34	42.4

Anti-CRISPR protein detection

Acr_ID: LS483456.1|SQH95107.1|3907655_3907805_+|Uncharacterised-protein

Click the colored protein region to show detailed information

Acr_ID: LS483456.1|SQH95102.1|3903035_3903374_-|Uncharacterised-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

LS483456.1|SQH95107.1|3907655_3907805_+|Uncharacterised-protein

3907655_3907805_+

49 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.4107142857142857	0.9655172413793104

3875430-3924173

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LS483456_2	Unclear	2.19\|1139252\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139252-1139283	32	3880360-3880391	2

1. spacer 2.19|1139252|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to LS483456 position: 3880360-3880391, mismatch: 2

tctgaccgttcgtagcgttggcaggctttgtt	CRISPR spacer
tctgaccgttcgtagagctggcaggctttgtt	Protospacer
*************** *.**************

LS483456.1|SQH95102.1|3903035_3903374_-|Uncharacterised-protein

3903035_3903374_-

112 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.43103448275862066	1.0

3875430-3924173

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
LS483456_2	Unclear	2.19\|1139252\|32\|LS483456\|PILER-CR,CRISPRCasFinder,CRT	1139252-1139283	32	3880360-3880391	2

1. spacer 2.19|1139252|32|LS483456|PILER-CR,CRISPRCasFinder,CRT matches to LS483456 position: 3880360-3880391, mismatch: 2

tctgaccgttcgtagcgttggcaggctttgtt	CRISPR spacer
tctgaccgttcgtagagctggcaggctttgtt	Protospacer
*************** *.**************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483456

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information