CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483454	Salmonella enterica subsp. enterica strain NCTC6480 genome assembly, chromosome: 1	2 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	12	15	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483454_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483454_1

1014723-1015606

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

14 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of LS483454_1

>merge|LS483454|1|1014723-1015606|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAGCCAGGCGTTATCTTCTGGCGTTCTTAGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGTGTCCTTTGTCGAATCGCCCAAAATGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGATTCGCCCAGGGATTCCGAAAATGCGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAACCGCTCGCGGATACCACGTATACACCCTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCCATAGAAGAGTCTGACCCTGATAACTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTAAAACTTCCTGAAATTTACGCTCTAGTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAATAACAAAAAGGATAAGCCCTACAATTGGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTTGACCGTATCTGGCAGGTACTCACCCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCGCAGATTCTCGGCGGCTGGGAAAACACGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTATCCGGGAAAAGTCGGGCAAAAAAAGCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGACCCGCAGCGGTGCCCCGTCGATTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGTGTGCGTGTGGCTGGAATTTTTTAATCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTTAGAATTACGCATTGAGCCGATGATGTAGTGTTCCCCGCGCCAACAAGGATAGCCGT

>LS483454|1|1|1014723-1015545|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGTGTCCTTTGTCGAATCGCCCAAAATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGATTCGCCCAGGGATTCCGAAAATGCGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTCGCGGATACCACGTATACACCCTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCCATAGAAGAGTCTGACCCTGATAACTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTAAAACTTCCTGAAATTTACGCTCTAGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAATAACAAAAAGGATAAGCCCTACAATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTGACCGTATCTGGCAGGTACTCACCCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTATCCGGGAAAAGTCGGGCAAAAAAAGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGACCCGCAGCGGTGCCCCGTCGATTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTGTGCGTGTGGCTGGAATTTTTTAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LS483454|1|1|1014723-1015606|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGTGTCCTTTGTCGAATCGCCCAAAATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGATTCGCCCAGGGATTCCGAAAATGCGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTCGCGGATACCACGTATACACCCTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCCATAGAAGAGTCTGACCCTGATAACTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTAAAACTTCCTGAAATTTACGCTCTAGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAATAACAAAAAGGATAAGCCCTACAATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTGACCGTATCTGGCAGGTACTCACCCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTATCCGGGAAAAGTCGGGCAAAAAAAGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGACCCGCAGCGGTGCCCCGTCGATTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTGTGCGTGTGGCTGGAATTTTTTAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTAGAATTACGCATTGAGCCGATGATGTA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>LS483454|1|1|1014723-1015606|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGTGTCCTTTGTCGAATCGCCCAAAATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGATTCGCCCAGGGATTCCGAAAATGCGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGCTCGCGGATACCACGTATACACCCTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCCATAGAAGAGTCTGACCCTGATAACTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTAAAACTTCCTGAAATTTACGCTCTAGTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAATAACAAAAAGGATAAGCCCTACAATTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTGACCGTATCTGGCAGGTACTCACCCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTATCCGGGAAAAGTCGGGCAAAAAAAGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGACCCGCAGCGGTGCCCCGTCGATTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGTGTGCGTGTGGCTGGAATTTTTTAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTAGAATTACGCATTGAGCCGATGATGTA
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483454.1\|SQH87808.1\|1023180_1025844_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483454.1\|SQH87800.1\|1013754_1014426_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483454.1\|SQH87807.1\|1021783_1022737_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483454.1\|SQH87809.1\|1025855_1027412_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483454.1\|SQH87801.1\|1014456_1014603_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483454.1\|SQH87795.1\|1008254_1008542_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	unknown	unknown	gnl\|CDD\|226136
LS483454.1\|SQH87799.1\|1012320_1013619_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483454.1\|SQH87802.1\|1015703_1016501_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483454.1\|SQH87798.1\|1010600_1012238_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483454.1\|SQH87810.1\|1027408_1027969_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LS483454.1\|SQH87797.1\|1009572_1010373_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483454.1\|SQH87796.1\|1008507_1008804_+\|ParE-toxin-protein	unknown	unknown	gnl\|CDD\|226194
LS483454.1\|SQH87804.1\|1017374_1019174_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483454.1\|SQH87803.1\|1016588_1016951_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483454.1\|SQH87792.1\|1001705_1004462_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	unknown	unknown	gnl\|CDD\|236848
LS483454.1\|SQH87806.1\|1020961_1021696_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483454.1\|SQH87794.1\|1005866_1008101_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LS483454.1\|SQH87811.1\|1027982_1029002_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LS483454.1\|SQH87805.1\|1019173_1020886_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483454.1\|SQH87793.1\|1004519_1005815_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|237291

Protein	Function_ID	Function_description	E-value
LS483454.1\|SQH87800.1\|1013754_1014426_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
LS483454.1\|SQH87807.1\|1021783_1022737_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483454.1\|SQH87809.1\|1025855_1027412_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LS483454.1\|SQH87808.1\|1023180_1025844_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483454.1\|SQH87795.1\|1008254_1008542_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	1.25825e-17
LS483454.1\|SQH87799.1\|1012320_1013619_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483454.1\|SQH87802.1\|1015703_1016501_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.38915e-102
LS483454.1\|SQH87803.1\|1016588_1016951_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LS483454.1\|SQH87810.1\|1027408_1027969_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	7.5874e-34
LS483454.1\|SQH87796.1\|1008507_1008804_+\|ParE-toxin-protein	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.79136e-12
LS483454.1\|SQH87798.1\|1010600_1012238_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483454.1\|SQH87804.1\|1017374_1019174_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483454.1\|SQH87792.1\|1001705_1004462_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
LS483454.1\|SQH87806.1\|1020961_1021696_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	9.44343e-139
LS483454.1\|SQH87794.1\|1005866_1008101_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LS483454.1\|SQH87811.1\|1027982_1029002_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.04504e-131
LS483454.1\|SQH87797.1\|1009572_1010373_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
LS483454.1\|SQH87805.1\|1019173_1020886_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483454.1\|SQH87793.1\|1004519_1005815_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0

>LS483454.1|SQH87801.1|1014456_1014603_+|Uncharacterised-protein
MPSVTHPLPCIVYFLYVNFDECIKALINFSIAMHGSRYFGKFKEKIIL
>LS483454.1|SQH87800.1|1013754_1014426_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483454.1|SQH87799.1|1012320_1013619_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483454.1|SQH87798.1|1010600_1012238_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>LS483454.1|SQH87797.1|1009572_1010373_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483454.1|SQH87796.1|1008507_1008804_+|ParE-toxin-protein
MRTVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>LS483454.1|SQH87795.1|1008254_1008542_+|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain
MARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPLAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>LS483454.1|SQH87794.1|1005866_1008101_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>LS483454.1|SQH87793.1|1004519_1005815_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>LS483454.1|SQH87792.1|1001705_1004462_-|BarA-sensory-histidine-kinase-(VarS-/-GacS)
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>LS483454.1|SQH87802.1|1015703_1016501_+|beta-lactamase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDGSTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483454.1|SQH87803.1|1016588_1016951_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LS483454.1|SQH87804.1|1017374_1019174_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMLGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>LS483454.1|SQH87805.1|1019173_1020886_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483454.1|SQH87806.1|1020961_1021696_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483454.1|SQH87807.1|1021783_1022737_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGSWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEANVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMGREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483454.1|SQH87808.1|1023180_1025844_+|helicase
MSIYHYWGKSRRGEIDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFSQQDKDAARDFLLRIKALFPLITLPESWDEDEGIDQFQQLSWFISAAVVLADWTGSACRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKNEQLQEGKFYCDRAFADQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LS483454.1|SQH87809.1|1025855_1027412_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDSATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDRVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>LS483454.1|SQH87810.1|1027408_1027969_+|transposase
MSIVTKDDKATLLQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWFQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>LS483454.1|SQH87811.1|1027982_1029002_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKEDLTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQ

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Crispr_ID: LS483454_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483454_2

1031653-1032291

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LS483454_2

>merge|LS483454|2|1031653-1032291|CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGATTTCGCAGGTAAGCTCCAAGCTGCGCACGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCATTCTGACTAACGCCACCACAATTGCCGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACCAGAACTTCACAACAGCGTATTTTTATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACTGAAACTACAGGCAGGGTAGCGCCGATTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCAGCTGCGACCAGCGGCGACGATTTTGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCAGGGAGTTATTCAACGGCTACAGGAGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGATCACGTTTTTCTCGCAGAACTTCGTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGCAATACTGCCGTTTCCATGTGGCAATACTGTGTTCCCCGCGCCAGCGGGGATAAACCGACTGACATTGTCAGCTAGAACCTTACACCGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAGGCCGACGGTGTGTACACCTCTAAAAAGTGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483454|2|2|1031653-1032291|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTCGCAGGTAAGCTCCAAGCTGCGCACGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTCTGACTAACGCCACCACAATTGCCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCAGAACTTCACAACAGCGTATTTTTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGAAACTACAGGCAGGGTAGCGCCGATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGCTGCGACCAGCGGCGACGATTTTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGGGAGTTATTCAACGGCTACAGGAGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGATCACGTTTTTCTCGCAGAACTTCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCAATACTGCCGTTTCCATGTGGCAATACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGACATTGTCAGCTAGAACCTTACACCGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAGGCCGACGGTGTGTACACCTCTAAAAA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483454|2|2|1031653-1032291|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTCGCAGGTAAGCTCCAAGCTGCGCACGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTCTGACTAACGCCACCACAATTGCCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCAGAACTTCACAACAGCGTATTTTTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGAAACTACAGGCAGGGTAGCGCCGATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGCTGCGACCAGCGGCGACGATTTTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGGGAGTTATTCAACGGCTACAGGAGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGATCACGTTTTTCTCGCAGAACTTCGTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCAATACTGCCGTTTCCATGTGGCAATACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTGACATTGTCAGCTAGAACCTTACACCGTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAGGCCGACGGTGTGTACACCTCTAAAAA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483454.1\|SQH87822.1\|1037446_1038157_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LS483454.1\|SQH87818.1\|1034520_1035960_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483454.1\|SQH87810.1\|1027408_1027969_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LS483454.1\|SQH87809.1\|1025855_1027412_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483454.1\|SQH87816.1\|1032305_1033352_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483454.1\|SQH87819.1\|1035946_1036552_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LS483454.1\|SQH87815.1\|1031262_1031556_+\|ssRNA-endonuclease	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
LS483454.1\|SQH87823.1\|1038156_1038636_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LS483454.1\|SQH87812.1\|1029051_1029798_+\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LS483454.1\|SQH87825.1\|1039662_1040424_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LS483454.1\|SQH87807.1\|1021783_1022737_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483454.1\|SQH87821.1\|1037116_1037428_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LS483454.1\|SQH87808.1\|1023180_1025844_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483454.1\|SQH87817.1\|1033602_1034511_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483454.1\|SQH87811.1\|1027982_1029002_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LS483454.1\|SQH87806.1\|1020961_1021696_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483454.1\|SQH87820.1\|1036602_1036926_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LS483454.1\|SQH87824.1\|1038632_1039682_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LS483454.1\|SQH87813.1\|1029779_1030346_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LS483454.1\|SQH87814.1\|1030342_1031263_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
LS483454.1\|SQH87822.1\|1037446_1038157_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.79177e-119
LS483454.1\|SQH87818.1\|1034520_1035960_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483454.1\|SQH87810.1\|1027408_1027969_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	7.5874e-34
LS483454.1\|SQH87809.1\|1025855_1027412_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
LS483454.1\|SQH87816.1\|1032305_1033352_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483454.1\|SQH87819.1\|1035946_1036552_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.2499e-145
LS483454.1\|SQH87815.1\|1031262_1031556_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.3037e-64
LS483454.1\|SQH87823.1\|1038156_1038636_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
LS483454.1\|SQH87812.1\|1029051_1029798_+\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.73887e-48
LS483454.1\|SQH87825.1\|1039662_1040424_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
LS483454.1\|SQH87807.1\|1021783_1022737_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483454.1\|SQH87821.1\|1037116_1037428_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LS483454.1\|SQH87808.1\|1023180_1025844_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483454.1\|SQH87817.1\|1033602_1034511_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483454.1\|SQH87811.1\|1027982_1029002_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.04504e-131
LS483454.1\|SQH87806.1\|1020961_1021696_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	9.44343e-139
LS483454.1\|SQH87820.1\|1036602_1036926_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
LS483454.1\|SQH87824.1\|1038632_1039682_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LS483454.1\|SQH87813.1\|1029779_1030346_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	2.32226e-64
LS483454.1\|SQH87814.1\|1030342_1031263_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.39311e-157

>LS483454.1|SQH87815.1|1031262_1031556_+|ssRNA-endonuclease
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>LS483454.1|SQH87814.1|1030342_1031263_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIKPPQPAPDMLPPAIPEPESLGDSGHRGHG
>LS483454.1|SQH87813.1|1029779_1030346_+|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQQIRREKSRQMIQFSSVDYTGVLVINDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>LS483454.1|SQH87812.1|1029051_1029798_+|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGRAPDALREAYRWYQDQFNTLKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLSKEDACISQE
>LS483454.1|SQH87811.1|1027982_1029002_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKEDLTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQ
>LS483454.1|SQH87810.1|1027408_1027969_+|transposase
MSIVTKDDKATLLQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWFQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>LS483454.1|SQH87809.1|1025855_1027412_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDSATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDRVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>LS483454.1|SQH87808.1|1023180_1025844_+|helicase
MSIYHYWGKSRRGEIDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFSQQDKDAARDFLLRIKALFPLITLPESWDEDEGIDQFQQLSWFISAAVVLADWTGSACRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKNEQLQEGKFYCDRAFADQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LS483454.1|SQH87807.1|1021783_1022737_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGSWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEANVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMGREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483454.1|SQH87806.1|1020961_1021696_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483454.1|SQH87816.1|1032305_1033352_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPAPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKYNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483454.1|SQH87817.1|1033602_1034511_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483454.1|SQH87818.1|1034520_1035960_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTVASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LS483454.1|SQH87819.1|1035946_1036552_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LS483454.1|SQH87820.1|1036602_1036926_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LS483454.1|SQH87821.1|1037116_1037428_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LS483454.1|SQH87822.1|1037446_1038157_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTSALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LS483454.1|SQH87823.1|1038156_1038636_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LS483454.1|SQH87824.1|1038632_1039682_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNVQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LS483454.1|SQH87825.1|1039662_1040424_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483454_1	1.14\|1015546\|32\|LS483454\|CRISPRCasFinder,CRT	1015546-1015577	32	CP053405	Salmonella enterica strain 2010K-2057 plasmid unnamed2, complete sequence	21764-21795	1	0.969
LS483454_1	1.14\|1015546\|32\|LS483454\|CRISPRCasFinder,CRT	1015546-1015577	32	NZ_CP012163	Enterobacter roggenkampii strain 35734 plasmid p35734-109.753kb, complete sequence	32903-32934	2	0.938
LS483454_1	1.14\|1015546\|32\|LS483454\|CRISPRCasFinder,CRT	1015546-1015577	32	NZ_CP009851	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence	36222-36253	2	0.938
LS483454_1	1.14\|1015546\|32\|LS483454\|CRISPRCasFinder,CRT	1015546-1015577	32	NZ_CP029434	Klebsiella quasipneumoniae strain CAV2013 plasmid pCAV2013-61, complete sequence	11707-11738	2	0.938
LS483454_1	1.14\|1015546\|32\|LS483454\|CRISPRCasFinder,CRT	1015546-1015577	32	NZ_CP029428	Klebsiella quasipneumoniae strain CAV2018 plasmid pCAV2018-51, complete sequence	48089-48120	2	0.938
LS483454_1	1.14\|1015546\|32\|LS483454\|CRISPRCasFinder,CRT	1015546-1015577	32	NZ_CP029440	Klebsiella quasipneumoniae strain CAV1947 plasmid pCAV1947-61, complete sequence	49931-49962	2	0.938
LS483454_1	1.7\|1015119\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015119-1015150	32	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	336521-336552	6	0.812
LS483454_2	2.5\|1031926\|32\|LS483454\|CRISPRCasFinder,CRT	1031926-1031957	32	NZ_CP013488	Vibrio alginolyticus strain ATCC 33787 plasmid pMBL96, complete sequence	11388-11419	6	0.812
LS483454_1	1.1\|1014752\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1014752-1014783	32	MN694106	Marine virus AFVG_250M510, complete genome	20131-20162	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP026048	Raoultella planticola strain FDAARGOS_64 plasmid unnamed1, complete sequence	51595-51626	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP026284	Klebsiella oxytoca strain KONIH2 plasmid pKOR-5873, complete sequence	54935-54966	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_KU254577	Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence	156707-156738	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_KX426227	Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence	35754-35785	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP026240	Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-1cb6, complete sequence	18594-18625	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	CP033569	Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence	291383-291414	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP033130	Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence	52998-53029	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	CP033531	Acinetobacter pittii strain 2014S07-126 plasmid p2014S07-126-1, complete sequence	25737-25768	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	MN310371	Pseudomonas monteilii strain QJ20133 plasmid pJ20133-VIM, complete sequence	190462-190493	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	MK496050	Pseudomonas sp. strain FFUP_PS_41 plasmid pJBCL41, complete sequence	286626-286657	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP010351	Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence	147987-148018	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP029396	Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence	108005-108036	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP026204	Escherichia coli strain ECONIH5 plasmid pKPC-bca9, complete sequence	30036-30067	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP032285	Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence	155479-155510	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP011588	Enterobacter asburiae strain CAV1043 plasmid pCAV1043-58, complete sequence	54427-54458	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP026057	Citrobacter freundii strain FDAARGOS_73 plasmid unnamed1, complete sequence	52127-52158	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP029435	Klebsiella quasipneumoniae strain CAV2013 plasmid pCAV2013-156, complete sequence	93317-93348	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP029430	Klebsiella quasipneumoniae strain CAV2018 plasmid pCAV2018-177, complete sequence	74708-74739	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	CP032293	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0073 plasmid unnamed2, complete sequence	19880-19911	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP038010	Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence	120571-120602	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP030755	Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence	101433-101464	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP033797	Enterobacter roggenkampii strain FDAARGOS_523 plasmid unnamed1, complete sequence	13769-13800	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP026426	Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence	146809-146840	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP043053	Acinetobacter pittii strain AP43 plasmid pAP43-OXA58-NDM1, complete sequence	64308-64339	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP043309	Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence	224903-224934	7	0.781
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP029441	Klebsiella quasipneumoniae strain CAV1947 plasmid pCAV1947-173, complete sequence	63458-63489	7	0.781
LS483454_1	1.11\|1015363\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015363-1015394	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	252075-252106	8	0.75
LS483454_2	2.5\|1031926\|32\|LS483454\|CRISPRCasFinder,CRT	1031926-1031957	32	NZ_CP049245	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed4, complete sequence	76682-76713	8	0.75
LS483454_2	2.5\|1031926\|32\|LS483454\|CRISPRCasFinder,CRT	1031926-1031957	32	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	60679-60710	8	0.75
LS483454_1	1.3\|1014874\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1014874-1014905	32	NZ_CP021406	Celeribacter manganoxidans strain DY25 plasmid pDY25-B, complete sequence	139088-139119	9	0.719
LS483454_1	1.8\|1015180\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015180-1015211	32	NZ_CP042495	Leclercia adecarboxylata strain E61 plasmid pE61_002, complete sequence	114741-114772	9	0.719
LS483454_1	1.9\|1015241\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015241-1015272	32	NZ_CP041349	Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence	165019-165050	9	0.719
LS483454_1	1.9\|1015241\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015241-1015272	32	NZ_CP021468	Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1	162511-162542	9	0.719
LS483454_1	1.9\|1015241\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015241-1015272	32	NZ_CP004365	Komagataeibacter xylinus E25 plasmid pGX5, complete sequence	240089-240120	9	0.719
LS483454_1	1.9\|1015241\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015241-1015272	32	NC_016037	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence	87740-87771	9	0.719
LS483454_1	1.9\|1015241\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015241-1015272	32	HM486077	Tsukamurella phage TPA2, complete sequence	22950-22981	9	0.719
LS483454_1	1.9\|1015241\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015241-1015272	32	NC_015210	Tsukamurella phage TPA2, complete genome	22950-22981	9	0.719
LS483454_2	2.3\|1031804\|32\|LS483454\|CRISPRCasFinder,CRT	1031804-1031835	32	NC_013792	Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence	180278-180309	9	0.719
LS483454_2	2.9\|1032170\|32\|LS483454\|CRISPRCasFinder,CRT	1032170-1032201	32	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	372796-372827	9	0.719
LS483454_1	1.7\|1015119\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015119-1015150	32	MN940411	Staphylococcus phage f2b1, partial genome	63547-63578	10	0.688
LS483454_1	1.10\|1015302\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015302-1015333	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	39491-39522	10	0.688
LS483454_1	1.11\|1015363\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015363-1015394	32	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	640067-640098	10	0.688
LS483454_1	1.11\|1015363\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015363-1015394	32	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	408470-408501	10	0.688
LS483454_1	1.13\|1015485\|32\|LS483454\|PILER-CR,CRISPRCasFinder,CRT	1015485-1015516	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688

1. spacer 1.14|1015546|32|LS483454|CRISPRCasFinder,CRT matches to CP053405 (Salmonella enterica strain 2010K-2057 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.969

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcattgagccgatgatgta	Protospacer
********.***********************

2. spacer 1.14|1015546|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP012163 (Enterobacter roggenkampii strain 35734 plasmid p35734-109.753kb, complete sequence) position: , mismatch: 2, identity: 0.938

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcatcgagccgatgatgta	Protospacer
********.********.**************

3. spacer 1.14|1015546|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP009851 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence) position: , mismatch: 2, identity: 0.938

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcatcgagccgatgatgta	Protospacer
********.********.**************

4. spacer 1.14|1015546|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP029434 (Klebsiella quasipneumoniae strain CAV2013 plasmid pCAV2013-61, complete sequence) position: , mismatch: 2, identity: 0.938

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcattgagccaatgatgta	Protospacer
********.**************.********

5. spacer 1.14|1015546|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP029428 (Klebsiella quasipneumoniae strain CAV2018 plasmid pCAV2018-51, complete sequence) position: , mismatch: 2, identity: 0.938

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcattgagccaatgatgta	Protospacer
********.**************.********

6. spacer 1.14|1015546|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP029440 (Klebsiella quasipneumoniae strain CAV1947 plasmid pCAV1947-61, complete sequence) position: , mismatch: 2, identity: 0.938

attttagaattacgcattgagccgatgatgta	CRISPR spacer
attttagagttacgcattgagccaatgatgta	Protospacer
********.**************.********

7. spacer 1.7|1015119|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

-gcgaataacaaaaaggataagccctacaattg	CRISPR spacer
tggaaatga-aaaaaggatatgccctacaaatg	Protospacer
 * .***.* ********** ********* **

8. spacer 2.5|1031926|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP013488 (Vibrio alginolyticus strain ATCC 33787 plasmid pMBL96, complete sequence) position: , mismatch: 6, identity: 0.812

tgcagctgcgaccagcggcgacgattttgatt	CRISPR spacer
cgcaaaagcgaccagtggcaacgattttgatt	Protospacer
.***.  ********.***.************

9. spacer 1.1|1014752|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to MN694106 (Marine virus AFVG_250M510, complete genome) position: , mismatch: 7, identity: 0.781

agccaggcgttatcttctggcgttcttagcgg	CRISPR spacer
gtaaatgctttatcttctagcgttcttagcgg	Protospacer
.   * ** *********.*************

10. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP026048 (Raoultella planticola strain FDAARGOS_64 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

11. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP026284 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-5873, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

12. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_KU254577 (Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

13. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_KX426227 (Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

14. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP026240 (Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-1cb6, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

15. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to CP033569 (Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

16. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP033130 (Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

17. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to CP033531 (Acinetobacter pittii strain 2014S07-126 plasmid p2014S07-126-1, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

18. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to MN310371 (Pseudomonas monteilii strain QJ20133 plasmid pJ20133-VIM, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

19. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to MK496050 (Pseudomonas sp. strain FFUP_PS_41 plasmid pJBCL41, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

20. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP010351 (Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

21. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP029396 (Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

22. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP026204 (Escherichia coli strain ECONIH5 plasmid pKPC-bca9, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

23. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP032285 (Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

24. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP011588 (Enterobacter asburiae strain CAV1043 plasmid pCAV1043-58, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

25. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP026057 (Citrobacter freundii strain FDAARGOS_73 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

26. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP029435 (Klebsiella quasipneumoniae strain CAV2013 plasmid pCAV2013-156, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

27. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP029430 (Klebsiella quasipneumoniae strain CAV2018 plasmid pCAV2018-177, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

28. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to CP032293 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0073 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

29. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP038010 (Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

30. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP030755 (Acinetobacter schindleri strain H3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

31. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP033797 (Enterobacter roggenkampii strain FDAARGOS_523 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

32. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP026426 (Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

33. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP043053 (Acinetobacter pittii strain AP43 plasmid pAP43-OXA58-NDM1, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

34. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP043309 (Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

35. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP029441 (Klebsiella quasipneumoniae strain CAV1947 plasmid pCAV1947-173, complete sequence) position: , mismatch: 7, identity: 0.781

actgacattgtcagctagaaccttacaccgtg-	CRISPR spacer
actgacattgtcagcttcaacctc-ttccgcgt	Protospacer
****************  *****. . ***.*

36. spacer 1.11|1015363|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 8, identity: 0.75

attgacccgcagcggtgccccgtcgatttgaa	CRISPR spacer
atatttccgcagctgtgcctcgtcgatttcca	Protospacer
**   .******* *****.*********  *

37. spacer 2.5|1031926|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP049245 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagctgcgaccagcggcgacgat--tttgatt	CRISPR spacer
gacagcttcgaccagcggcggcgatggtccga--	Protospacer
 .***** ************.****  *..**

38. spacer 2.5|1031926|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tgcagctgcgaccagcggcgacgattttgatt-	CRISPR spacer
cgcaacggcgaccagcggcgacga-caggatcg	Protospacer
.***.* ***************** .  ***.

39. spacer 1.3|1014874|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021406 (Celeribacter manganoxidans strain DY25 plasmid pDY25-B, complete sequence) position: , mismatch: 9, identity: 0.719

gcagattcgcccagggattccgaaaatgcgtg	CRISPR spacer
accgccaagccctgggatgccgaaaatgcgtc	Protospacer
.* * .  **** ***** ************

40. spacer 1.8|1015180|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042495 (Leclercia adecarboxylata strain E61 plasmid pE61_002, complete sequence) position: , mismatch: 9, identity: 0.719

attttgaccgtatctggcaggtactcacccag	CRISPR spacer
cctttgaccgtatctggcaagtcctgtcagcg	Protospacer
 .*****************.** **  *   *

41. spacer 1.9|1015241|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgcgcagattctcggcggctgggaaaacac	CRISPR spacer
ggcgcgccgattatcggcggctgtttcgccat	Protospacer
******* **** **********    . **.

42. spacer 1.9|1015241|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021468 (Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1) position: , mismatch: 9, identity: 0.719

ggcgcgcagattctcggcggctgggaaaacac	CRISPR spacer
ggcgcgccgattatcggcggctgctttgccat	Protospacer
******* **** **********    . **.

43. spacer 1.9|1015241|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004365 (Komagataeibacter xylinus E25 plasmid pGX5, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgcgcagattctcggcggctgggaaaacac	CRISPR spacer
ggcgcgccgattatcggcggctgtttcgccat	Protospacer
******* **** **********    . **.

44. spacer 1.9|1015241|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NC_016037 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgcgcagattctcggcggctgggaaaacac	CRISPR spacer
ggcgcgccgattatcggcggctgtttcgccat	Protospacer
******* **** **********    . **.

45. spacer 1.9|1015241|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to HM486077 (Tsukamurella phage TPA2, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgcgcagattctcggcggctgggaaaacac	CRISPR spacer
atcgactggattctcggcgggtgggagaacat	Protospacer
. **  ..************ *****.****.

46. spacer 1.9|1015241|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NC_015210 (Tsukamurella phage TPA2, complete genome) position: , mismatch: 9, identity: 0.719

ggcgcgcagattctcggcggctgggaaaacac	CRISPR spacer
atcgactggattctcggcgggtgggagaacat	Protospacer
. **  ..************ *****.****.

47. spacer 2.3|1031804|32|LS483454|CRISPRCasFinder,CRT matches to NC_013792 (Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence) position: , mismatch: 9, identity: 0.719

aaccagaacttcacaacagcgtatttttataa	CRISPR spacer
gagaaagtcttctcaacagcctatttttatac	Protospacer
.*  *.. **** ******* **********

48. spacer 2.9|1032170|32|LS483454|CRISPRCasFinder,CRT matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

actgacattgtcagctagaaccttacaccgtg	CRISPR spacer
ggtttcattgtcagctagaaacttaaacagct	Protospacer
. *  *************** **** ** *.

49. spacer 1.7|1015119|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to MN940411 (Staphylococcus phage f2b1, partial genome) position: , mismatch: 10, identity: 0.688

gcgaataacaaaaaggataagccctacaattg	CRISPR spacer
tactacaacaaaaatgataaaccctacaacca	Protospacer
    *.******** *****.********...

50. spacer 1.10|1015302|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 10, identity: 0.688

gttatccgggaaaagtcgggcaaaaaaagcgt	CRISPR spacer
gccgagatggaaaattcgggcataaaaagcgg	Protospacer
*...    ****** ******* ********

51. spacer 1.11|1015363|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 10, identity: 0.688

attgacccgcagcggtgccccgtcgatttgaa	CRISPR spacer
agcacgccgcaccgttgccccgtcgatttcgc	Protospacer
* ..  ***** ** ************** .

52. spacer 1.11|1015363|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 10, identity: 0.688

attgacccgcagcggtgccccgtcgatttgaa	CRISPR spacer
agcacgccgcaccgttgccccgtcgatttcgc	Protospacer
* ..  ***** ** ************** .

53. spacer 1.13|1015485|32|LS483454|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

366711 : 427565

Bacillus_phage(30.0%)

integrase,transposase

attL 424079:424094|attR 431335:431350

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH87166.1\|366711_366948_+\|integrase	integrase-like protein Y4LS	NA	NA	NA	NA
SQH87167.1\|366984_367815_+	Uncharacterised protein	NA	NA	NA	NA
SQH87168.1\|367832_368294_+	Uncharacterised protein	NA	NA	NA	NA
SQH87169.1\|368559_369864_-	phospho-beta-glucosidase B	NA	NA	NA	NA
SQH87170.1\|369970_370297_+	transcriptional regulator	NA	NA	NA	NA
SQH87171.1\|370260_370467_-	Uncharacterised protein	Q716C2	Shigella_phage	4.6e-19	66.7
SQH87172.1\|370585_371662_-	Transposase IS116/IS110/IS902 family	NA	NA	NA	NA
SQH87173.1\|371868_372357_-\|transposase	transposase InsF for insertion sequence IS3A/B/C/D/E/fA	S5FNT8	Shigella_phage	2.3e-56	69.0
SQH87174.1\|372606_372792_-\|transposase	transposase insN	NA	NA	NA	NA
SQH87175.1\|373525_373852_-	Orf10	NA	NA	NA	NA
SQH87176.1\|373875_374637_-	transcriptional regulator	NA	NA	NA	NA
SQH87177.1\|374636_375119_-	Positive regulator GrlA	NA	NA	NA	NA
SQH87178.1\|375221_375659_-	Uncharacterised protein	NA	NA	NA	NA
SQH87179.1\|375678_376185_-	Protein of uncharacterised function (DUF2919)	NA	NA	NA	NA
SQH87180.1\|376171_378229_-	Predicted O-linked N-acetylglucosamine transferase, SPINDLY family	NA	NA	NA	NA
SQH87181.1\|378359_387320_-	Heme:hemopexin utilization protein A	NA	NA	NA	NA
SQH87182.1\|387474_389232_-	Heme/hemopexin transporter protein huxB precursor	NA	NA	NA	NA
SQH87183.1\|389868_391107_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
SQH87184.1\|391096_392059_+	Multifunctional cyclase-dehydratase-3-O-methyl transferase tcmN	NA	NA	NA	NA
SQH87185.1\|392055_393021_+	Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)	NA	NA	NA	NA
SQH87186.1\|393007_394177_+	Uncharacterised protein	NA	NA	NA	NA
SQH87187.1\|394164_395259_+	Uncharacterised protein	NA	NA	NA	NA
SQH87188.1\|395886_396156_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQH87189.1\|396497_397103_-	Plasmid replication region DNA-binding N-term	NA	NA	NA	NA
SQH87190.1\|397675_397894_+	CcdA protein (antitoxin to CcdB)	NA	NA	NA	NA
SQH87191.1\|397895_398201_+	pirin	NA	NA	NA	NA
SQH87192.1\|398202_398529_+	putative cytoplasmic protein	NA	NA	NA	NA
SQH87193.1\|398518_399316_+	resolvase	I3WFA4	Macacine_betaherpesvirus	5.0e-53	90.4
SQH87194.1\|399376_400021_-	replication protein	NA	NA	NA	NA
SQH87195.1\|400617_400854_+	Uncharacterised protein	NA	NA	NA	NA
SQH87196.1\|401115_401643_+	colicin Ib, pore forming protein	NA	NA	NA	NA
SQH87197.1\|401661_402195_-	Microcin-A immunity protein	NA	NA	NA	NA
SQH87198.1\|402197_402317_+	Uncharacterised protein	NA	NA	NA	NA
SQH87199.1\|402330_402474_+	Lysis protein for colicin N precursor	NA	NA	NA	NA
SQH87200.1\|402845_404201_+	colicin Ib, pore forming protein	NA	NA	NA	NA
SQH87201.1\|404276_404822_+	YacC	NA	NA	NA	NA
SQH87202.1\|404827_405484_-	putative cytoplasmic protein	Q2A0A7	Sodalis_phage	2.9e-46	50.8
SQH87203.1\|405586_406588_-\|integrase	site-specific integrase/recombinase	A0A142F1N9	Bacillus_phage	8.9e-15	23.3
SQH87204.1\|406584_407499_-	Tyrosine recombinase XerD	S5W9T9	Leptospira_phage	4.3e-08	24.9
SQH87205.1\|407492_408752_-\|integrase	site-specific integrase/recombinase	NA	NA	NA	NA
SQH87206.1\|408875_409175_-	Uncharacterized protein YfaD	NA	NA	NA	NA
SQH87207.1\|409409_409646_-	Ferrous iron-sensisng transcriptional regulator FeoC	NA	NA	NA	NA
SQH87208.1\|409658_411977_-	ferrous iron transport protein B	NA	NA	NA	NA
SQH87209.1\|411995_412223_-	ferrous iron transport protein	NA	NA	NA	NA
SQH87210.1\|412659_414990_-	transcription accessory protein	NA	NA	NA	NA
SQH87211.1\|415088_415562_-	transcription elongation factor GreB	NA	NA	NA	NA
SQH87212.1\|415787_416507_+	osmolarity response regulator	W8CYM9	Bacillus_phage	3.5e-29	34.7
SQH87213.1\|416503_417856_+	two-component sensor kinase EnvZ	W8CYF6	Bacillus_phage	9.5e-12	22.9
SQH87214.1\|417930_419550_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	1.2e-141	53.3
SQH87215.1\|419929_421639_+	membrane protein	NA	NA	NA	NA
SQH87216.1\|421749_422628_-	33 kDa chaperonin (Heat shock protein 33)(HSP33)	NA	NA	NA	NA
SQH87217.1\|422652_423054_-	heat shock protein	NA	NA	NA	NA
SQH87218.1\|423064_423733_-	hydrolase	NA	NA	NA	NA
SQH87219.1\|423797_425930_-	IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system	NA	NA	NA	NA
424079:424094	attL	NA	NA	NA	NA
SQH87220.1\|426219_426816_+	NUDIX hydrolase	NA	NA	NA	NA
SQH87221.1\|426881_427565_-\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
431335:431350	attR	NA	NA	NA	NA

DBSCAN-SWA_2

498117 : 581956

Salmonella_phage(33.33%)

holin,tRNA,integrase,terminase,head,transposase,tail,capsid,protease

attL 521515:521537|attR 559654:559676

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH87307.1\|498117_499065_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	6.5e-07	35.9
SQH87308.1\|499080_499590_-	polypeptide deformylase	E3SLL2	Synechococcus_phage	6.7e-19	41.1
SQH87309.1\|499721_500846_+	DNA protecting protein DprA	NA	NA	NA	NA
SQH87310.1\|500817_501291_+	Protein of uncharacterised function Smg	NA	NA	NA	NA
SQH87311.1\|501317_501860_+	DNA topoisomerase I-related protein	NA	NA	NA	NA
SQH87312.1\|501864_502437_+	putative ribosome maturation factor	A0A291ATS8	Pandoravirus	9.9e-11	27.3
SQH87313.1\|502438_503260_+	shikimate 5-dehydrogenase	NA	NA	NA	NA
SQH87314.1\|503256_503514_+	putative periplasmic protein	NA	NA	NA	NA
SQH87315.1\|503489_504044_-	transferase	NA	NA	NA	NA
SQH87316.1\|510047_510449_+\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH87317.1\|510619_511303_+\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
SQH87318.1\|512086_512308_-	lipoprotein	NA	NA	NA	NA
SQH87319.1\|512544_515658_-	acriflavin resistance protein F	NA	NA	NA	NA
SQH87320.1\|515669_516827_-	acriflavin resistance protein E	NA	NA	NA	NA
SQH87321.1\|517239_517902_+	DNA-binding transcriptional regulator EnvR	NA	NA	NA	NA
SQH87322.1\|517904_520004_-	histidine kinase	G3MA91	Bacillus_virus	7.1e-22	33.5
SQH87323.1\|520153_520318_-	protein yhdU	NA	NA	NA	NA
SQH87324.1\|520400_521285_-	methyltransferase	M4QNN5	Ostreococcus_lucimarinus_virus	1.3e-25	32.8
521515:521537	attL	NA	NA	NA	NA
SQH87325.1\|521748_522978_+\|integrase	phage integrase family protein	A0A2H4JB45	uncultured_Caudovirales_phage	7.8e-154	60.3
SQH87326.1\|522974_523625_+	Uncharacterised protein	NA	NA	NA	NA
SQH87327.1\|523931_524216_+	prophage DNA-binding protein	NA	NA	NA	NA
SQH87328.1\|524236_524887_+	bacteriophage protein	A0A0P0J0J7	Acinetobacter_phage	8.3e-22	47.1
SQH87329.1\|524951_525137_-	Uncharacterised protein	NA	NA	NA	NA
SQH87330.1\|525324_525612_+	Uncharacterised protein	NA	NA	NA	NA
SQH87331.1\|525604_525766_+	Uncharacterised protein	NA	NA	NA	NA
SQH87332.1\|525758_526157_+	DNA primase	A0A286SGR4	Klebsiella_phage	1.1e-11	54.2
SQH87333.1\|526149_526320_+	Uncharacterised protein	NA	NA	NA	NA
SQH87334.1\|526312_526540_+	Uncharacterised protein	NA	NA	NA	NA
SQH87335.1\|526520_526886_+	Uncharacterised protein	NA	NA	NA	NA
SQH87336.1\|526878_527631_+	phage-like protein	A0A0P0ZD96	Stx2-converting_phage	4.3e-30	77.8
SQH87337.1\|527627_527933_+	Uncharacterised protein	NA	NA	NA	NA
SQH87338.1\|528022_528406_+	Uncharacterised protein	NA	NA	NA	NA
SQH87339.1\|528398_529046_+	Uncharacterised protein	A0A286S1S7	Klebsiella_phage	3.6e-33	39.0
SQH87340.1\|529056_531198_+	P4 alpha zinc-binding domain-containing protein	A0A1W6JPG0	Morganella_phage	6.6e-193	57.6
SQH87341.1\|531194_531590_+	ssDNA-binding protein	NA	NA	NA	NA
SQH87342.1\|531633_532626_+	Fels-1 prophage	A0A1B5FPA6	Escherichia_phage	6.0e-72	52.1
SQH87343.1\|532710_533526_+	Phage antitermination protein Q	A0A1B5FPA5	Escherichia_phage	2.3e-106	75.6
SQH87344.1\|533689_534373_-	virulence protein	Q9MBM0	Phage_Gifsy-2	3.6e-84	69.2
SQH87345.1\|535196_535535_+\|holin	phage holin, lambda family protein	Q8HA87	Salmonella_phage	9.9e-43	100.0
SQH87346.1\|535537_536152_+	bacteriophage protein	Q8HA86	Salmonella_phage	6.7e-106	91.7
SQH87347.1\|536148_536700_+\|tail	phage-tail assembly protein	NA	NA	NA	NA
SQH87348.1\|536689_537103_+	Uncharacterised protein	NA	NA	NA	NA
SQH87349.1\|537148_537694_-	Uncharacterised protein	S4TR57	Salmonella_phage	4.7e-95	98.3
SQH87350.1\|537770_538106_+	Uncharacterised protein	S4TTH3	Salmonella_phage	1.0e-52	89.2
SQH87351.1\|538187_538529_+	Gp74	A0A2I6PIG1	Escherichia_phage	3.9e-47	74.8
SQH87352.1\|538648_539113_+\|terminase	terminase	Q9B019	Phage_GMSE-1	2.2e-48	62.1
SQH87353.1\|539066_540809_+\|terminase	phage terminase, large subunit	A0A0U2C138	Paracoccus_phage	6.5e-138	44.5
SQH87354.1\|540808_542113_+	histone H1	K7PJU5	Enterobacteria_phage	4.7e-218	86.4
SQH87355.1\|542126_542975_+	peptidase	K7PH05	Enterobacteria_phage	1.3e-131	88.2
SQH87356.1\|542984_544202_+\|capsid	capsid protein	K7PM57	Enterobacteria_phage	1.2e-199	88.9
SQH87357.1\|544245_544524_+	Uncharacterised protein	K7PHI6	Enterobacteria_phage	3.1e-10	66.0
SQH87358.1\|544523_544850_+	phage protein	K7PKT4	Enterobacteria_phage	1.2e-48	84.3
SQH87359.1\|544859_545198_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	70.5
SQH87360.1\|545194_545644_+	phage protein, HK97 gp10 family	S4TR46	Salmonella_phage	1.1e-73	97.3
SQH87361.1\|545640_545988_+	Protein of uncharacterised function (DUF3168)	S4TTG3	Salmonella_phage	7.5e-46	78.8
SQH87362.1\|546045_546750_+\|tail	tail protein	K7PHL2	Enterobacterial_phage	1.4e-94	76.1
SQH87363.1\|546776_547148_+\|tail	phage tail protein	S4TSQ0	Salmonella_phage	6.3e-59	90.1
SQH87364.1\|547159_547450_+\|tail	phage tail protein	S4TND7	Salmonella_phage	2.9e-43	95.7
SQH87365.1\|547508_547886_+	Uncharacterised protein	NA	NA	NA	NA
SQH87366.1\|548020_551227_+\|tail	tail length tape measure protein	K7PKG1	Enterobacteria_phage	0.0e+00	69.0
SQH87367.1\|551268_551421_+	Uncharacterised protein	NA	NA	NA	NA
SQH87368.1\|551397_551637_-	Uncharacterised protein	NA	NA	NA	NA
SQH87369.1\|551802_552396_+	Uncharacterised protein	S4TSP7	Salmonella_phage	3.4e-107	95.4
SQH87370.1\|552395_552980_+	Uncharacterised protein	S4TND4	Salmonella_phage	5.4e-105	96.9
SQH87371.1\|552986_553385_+	Uncharacterised protein	S4TR39	Salmonella_phage	2.9e-70	94.7
SQH87372.1\|553384_556105_+\|tail	tail protein	S4TTF5	Salmonella_phage	0.0e+00	97.6
SQH87373.1\|556113_557073_+	Uncharacterised protein	H6WRW5	Salmonella_phage	3.5e-178	96.6
SQH87374.1\|557083_558382_+	Uncharacterised protein	I6R0Q9	Salmonella_phage	1.7e-159	67.6
SQH87375.1\|558517_558628_-	virulence protein	K7P6H1	Enterobacteria_phage	3.2e-11	91.7
SQH87376.1\|558706_559231_-	Uncharacterised protein	NA	NA	NA	NA
SQH87377.1\|559743_560040_-	Fis DNA-binding protein	NA	NA	NA	NA
559654:559676	attR	NA	NA	NA	NA
SQH87378.1\|560065_561031_-\|tRNA	tRNA-dihydrouridine synthase B	NA	NA	NA	NA
SQH87379.1\|561691_562573_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
SQH87380.1\|562584_564036_-	sodium/pantothenate symporter	NA	NA	NA	NA
SQH87381.1\|564025_564268_-	Membrane protein	NA	NA	NA	NA
SQH87382.1\|564376_565726_-	biotin carboxylase	NA	NA	NA	NA
SQH87383.1\|565736_566207_-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	NA	NA	NA	NA
SQH87384.1\|566599_567199_-	Membrane protein YedZ	NA	NA	NA	NA
SQH87385.1\|567199_568204_-	reductase	NA	NA	NA	NA
SQH87386.1\|568316_569291_-	oxidoreductase	NA	NA	NA	NA
SQH87387.1\|569494_571435_+	lipoprotein	NA	NA	NA	NA
SQH87388.1\|571742_572786_+	rod shape-determining protein mreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
SQH87389.1\|572850_573903_+	rod shape-determining protein	NA	NA	NA	NA
SQH87390.1\|573902_574394_+	rod shape-determining protein MreD	NA	NA	NA	NA
SQH87391.1\|574402_574996_+	Septum formation protein Maf	NA	NA	NA	NA
SQH87392.1\|574985_576455_+	ribonuclease G	NA	NA	NA	NA
SQH87393.1\|576565_580366_+	Uncharacterized protein involved in outer membrane biogenesis	NA	NA	NA	NA
SQH87394.1\|580510_581956_+\|protease	protease TldD	NA	NA	NA	NA

DBSCAN-SWA_3

598341 : 654993

Staphylococcus_phage(11.76%)

integrase,transposase,protease

attL 653622:653640|attR 656763:656781

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH87413.1\|598341_599412_-\|protease	serine endoprotease	NA	NA	NA	NA
SQH87414.1\|599504_600872_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	2.7e-22	26.3
SQH87415.1\|601028_601427_-	cytochrome d ubiquinol oxidase subunit III	NA	NA	NA	NA
SQH87416.1\|601619_602744_+	ATP/GTP-binding protein	NA	NA	NA	NA
SQH87417.1\|603045_603474_+	50S ribosomal protein L13	NA	NA	NA	NA
SQH87418.1\|603489_603882_+	30S ribosomal subunit protein S9	NA	NA	NA	NA
SQH87419.1\|604196_604835_+	stringent starvation protein A	NA	NA	NA	NA
SQH87420.1\|604840_605341_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.5e-26	55.8
SQH87421.1\|605458_606241_+	GntR family transcriptional regulator	NA	NA	NA	NA
SQH87422.1\|606375_607269_+	N-acetylneuraminate lyase	NA	NA	NA	NA
SQH87423.1\|607384_608875_+	Sialic acid transporter (permease) NanT	Q6JIH2	Burkholderia_virus	7.8e-07	21.9
SQH87424.1\|608921_609611_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
SQH87425.1\|609607_610483_+	kinase	NA	NA	NA	NA
SQH87426.1\|610479_610947_+	putative cytoplasmic protein	NA	NA	NA	NA
SQH87427.1\|611028_612309_-	cytosine deaminase	NA	NA	NA	NA
SQH87428.1\|612295_613549_-	cytosine permease	NA	NA	NA	NA
SQH87429.1\|613666_614770_-	Uncharacterized conserved protein	A0A0U2BZN7	Salmonella_phage	1.9e-74	88.1
SQH87430.1\|614977_616396_-	glutamate synthase	NA	NA	NA	NA
SQH87431.1\|616405_620866_-	glutamate synthase subunit alpha	NA	NA	NA	NA
SQH87432.1\|621537_622467_+	putative Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	6.7e-17	35.0
SQH87433.1\|622560_624897_+	aerobic respiration control sensor protein ArcB	A0A1V0SGX0	Hokovirus	6.0e-38	30.6
SQH87434.1\|625123_625777_+	Enhancing lycopene biosynthesis protein 2	NA	NA	NA	NA
SQH87435.1\|625773_626502_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
SQH87436.1\|626576_627209_-	PhoP regulatory network protein YrbL	NA	NA	NA	NA
SQH87437.1\|627458_627731_-	phosphocarrier protein Hpr	NA	NA	NA	NA
SQH87438.1\|627727_628582_-	glmZ(sRNA)-inactivating NTPase	A0A0R8VB27	Thermobifida_phage	1.4e-05	28.4
SQH87439.1\|628627_629119_-	nitrogen regulatory IIA protein	NA	NA	NA	NA
SQH87440.1\|629236_629524_-	sigma(54) modulation protein	NA	NA	NA	NA
SQH87441.1\|629546_630980_-	RNA polymerase sigma-54 factor (sigma-N)	NA	NA	NA	NA
SQH87442.1\|631027_631753_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.1e-22	28.4
SQH87443.1\|631759_632314_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
SQH87444.1\|632282_632858_-	Uncharacterized protein YrbK clustered with lipopolysaccharide transporters	NA	NA	NA	NA
SQH87445.1\|632854_633421_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	A0A140XBD6	Dickeya_phage	3.6e-53	74.3
SQH87446.1\|633441_634428_-	D-arabinose 5-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.1e-38	31.2
SQH87447.1\|634441_635419_-	Inner membrane protein YrbG predicted calcium/sodium:proton antiporter	A0A2D1GNI8	Pseudoalteromonas_phage	1.5e-06	22.9
SQH87448.1\|635631_636444_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.7e-20	30.2
SQH87449.1\|636451_637234_+	putative ABC transporter permease component YrbE	NA	NA	NA	NA
SQH87450.1\|637238_637790_+	putative ABC transporter periplasmic component YrbD	NA	NA	NA	NA
SQH87451.1\|637808_638444_+	putative ABC transporter auxiliary component YrbC	NA	NA	NA	NA
SQH87452.1\|638443_638740_+	sulfate transporter	NA	NA	NA	NA
SQH87453.1\|638888_639182_+	YrbA protein	NA	NA	NA	NA
SQH87454.1\|639235_640495_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
SQH87455.1\|640552_640840_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	3.5e-17	68.7
SQH87456.1\|641072_642185_-	octaprenyl diphosphate synthase	A0A1V0SE37	Indivirus	9.0e-08	25.8
SQH87457.1\|642301_642613_+	50S ribosomal protein L21	NA	NA	NA	NA
SQH87458.1\|642632_642890_+	50S ribosomal subunit protein L27	NA	NA	NA	NA
SQH87459.1\|643019_643985_+	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA
SQH87460.1\|644000_645173_+	GTPase ObgE	NA	NA	NA	NA
SQH87461.1\|645303_646737_-	penicillin-binding protein	NA	NA	NA	NA
SQH87462.1\|646984_647461_+	transcription elongation factor	NA	NA	NA	NA
SQH87463.1\|647616_647949_-	RNA binding protein	NA	NA	NA	NA
SQH87464.1\|648036_648663_+	cell division protein	NA	NA	NA	NA
SQH87465.1\|648757_650701_+\|protease	ATP-dependent metalloprotease	G8DDJ2	Micromonas_pusilla_virus	7.0e-117	43.3
SQH87466.1\|650805_651654_+	dihydropteroate synthase	S4W084	Pandoravirus	1.4e-21	30.3
SQH87467.1\|651646_652984_+	PGM/PMM family protein	NA	NA	NA	NA
SQH87468.1\|653206_653539_+	Protein-export membrane protein secG	NA	NA	NA	NA
653622:653640	attL	NA	NA	NA	NA
SQH87469.1\|653737_654139_+\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH87470.1\|654309_654993_+\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
656763:656781	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1027408 : 1076092

Escherichia_phage(28.57%)

integrase,transposase,tRNA

attL 1059862:1059877|attR 1080009:1080024

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH87810.1\|1027408_1027969_+\|transposase	transposase	NA	NA	NA	NA
SQH87811.1\|1027982_1029002_+	CRISPR-associated protein Cse4	NA	NA	NA	NA
SQH87812.1\|1029051_1029798_+	CRISPR-associated protein Cas5e family	NA	NA	NA	NA
SQH87813.1\|1029779_1030346_+	CRISPR-associated protein Cse3 family	NA	NA	NA	NA
SQH87814.1\|1030342_1031263_+	CRISPR-associated protein Cas1	NA	NA	NA	NA
SQH87815.1\|1031262_1031556_+	ssRNA endonuclease	NA	NA	NA	NA
SQH87816.1\|1032305_1033352_-	alkaline phosphatase isozyme conversion aminopeptidase	NA	NA	NA	NA
SQH87817.1\|1033602_1034511_+	Sulfate adenylyltransferase subunit 2 1	NA	NA	NA	NA
SQH87818.1\|1034520_1035960_+	ATP sulfurylase	A0A1V0SGC3	Hokovirus	2.7e-33	26.5
SQH87819.1\|1035946_1036552_+	adenosine 5-phosphosulfate kinase	A0A2K9L4R9	Tupanvirus	2.2e-29	39.6
SQH87820.1\|1036602_1036926_+	Inner membrane protein ygbE	NA	NA	NA	NA
SQH87821.1\|1037116_1037428_+	Cell division protein DivIC (FtsB) stabilizesFtsL against RasP cleavage	NA	NA	NA	NA
SQH87822.1\|1037446_1038157_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
SQH87823.1\|1038156_1038636_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
SQH87824.1\|1038632_1039682_+\|tRNA	tRNA pseudouridine 13 synthase	NA	NA	NA	NA
SQH87825.1\|1039662_1040424_+	stationary phase survival protein SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-57	48.8
SQH87826.1\|1040417_1041044_+	L-isoaspartyl protein carboxyl methyltransferase type II	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-35	49.4
SQH87827.1\|1041219_1042341_+	lipoprotein NlpD	D7RWE0	Brochothrix_phage	5.0e-06	35.6
SQH87828.1\|1042403_1043396_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
SQH87829.1\|1043500_1043902_+\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH87830.1\|1044072_1044756_+\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
SQH87831.1\|1044756_1044993_-	Hydroxyaromatic non-oxidative decarboxylaseprotein D	NA	NA	NA	NA
SQH87832.1\|1045003_1046431_-	Hydroxyaromatic non-oxidative decarboxylaseprotein B, Hydroxyaromatic non-oxidatived ecarboxylase protein C	NA	NA	NA	NA
SQH87833.1\|1046430_1047024_-	decarboxylase	NA	NA	NA	NA
SQH87834.1\|1047194_1047599_+	Transcriptional regulator hosA	NA	NA	NA	NA
SQH87835.1\|1047617_1048382_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.1e-70	57.5
SQH87836.1\|1048578_1049502_+	oxidoreductase	A0A077SLF7	Escherichia_phage	1.7e-116	77.4
SQH87837.1\|1049495_1050758_+	membrane protein	A0A077SLJ7	Escherichia_phage	1.7e-132	61.8
SQH87838.1\|1050754_1051393_+	sugar aldolase	A0A077SK32	Escherichia_phage	1.8e-85	75.0
SQH87839.1\|1051397_1052174_+	putative hydroxypyruvate isomerase	NA	NA	NA	NA
SQH87840.1\|1052213_1053164_+	NAD dependent epimerase/dehydratase family protein	NA	NA	NA	NA
SQH87841.1\|1053160_1054657_+	permease	NA	NA	NA	NA
SQH87842.1\|1054698_1055610_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQH87843.1\|1055718_1056927_+	membrane protein	NA	NA	NA	NA
SQH87844.1\|1056923_1057304_+	putative cytoplasmic protein	NA	NA	NA	NA
SQH87845.1\|1057359_1059921_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	8.6e-30	21.2
1059862:1059877	attL	NA	NA	NA	NA
SQH87846.1\|1060138_1061422_+\|integrase	site-specific recombinase, phage integrase family protein	I6R9B6	Salmonella_phage	1.7e-18	27.3
SQH87847.1\|1061589_1063380_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQH87848.1\|1063376_1065740_+	Protein of uncharacterised function DUF262	NA	NA	NA	NA
SQH87849.1\|1066378_1068118_+	Uncharacterised protein	NA	NA	NA	NA
SQH87850.1\|1068114_1068975_+	Uncharacterised protein	NA	NA	NA	NA
SQH87851.1\|1069090_1070230_-	Uncharacterised protein	NA	NA	NA	NA
SQH87852.1\|1070839_1071052_-	Uncharacterised protein	NA	NA	NA	NA
SQH87853.1\|1071119_1071509_-	Uncharacterised protein	NA	NA	NA	NA
SQH87854.1\|1071540_1071900_-	Uncharacterised protein	NA	NA	NA	NA
SQH87855.1\|1071914_1072442_-	Uncharacterised protein	NA	NA	NA	NA
SQH87856.1\|1072844_1073333_+	putative bacteriophage protein	NA	NA	NA	NA
SQH87857.1\|1073657_1074080_+	Protein of uncharacterised function (DUF2787)	NA	NA	NA	NA
SQH87858.1\|1074121_1074661_+	Uncharacterised protein	NA	NA	NA	NA
SQH87859.1\|1074662_1075115_+	DNA repair protein, RadC family	NA	NA	NA	NA
SQH87860.1\|1075161_1075671_+\|integrase	integrase/recombinase	NA	NA	NA	NA
SQH87861.1\|1075630_1076092_+\|integrase	integrase/recombinase	A0A1B1P7C7	Bacillus_phage	3.8e-05	29.0
1080009:1080024	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1333089 : 1375761

Escherichia_phage(43.9%)

integrase,tail,protease

attL 1325823:1325837|attR 1338556:1338570

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1325823:1325837	attL	NA	NA	NA	NA
SQH88095.1\|1333089_1334319_+\|integrase	integrase	H6WRW7	Salmonella_phage	4.8e-236	95.8
SQH88096.1\|1334349_1334919_-	bacteriophage protein	A0A2R2Z302	Escherichia_phage	1.6e-40	72.6
SQH88097.1\|1335184_1335460_-	excisionase-like protein	H6WRW8	Salmonella_phage	1.6e-27	69.8
SQH88098.1\|1335500_1335743_-	putative bacteriophage protein	H6WRW9	Salmonella_phage	4.9e-36	96.2
SQH88099.1\|1335745_1338094_-	putative DNA methylase	A0A1B0V7P0	Salmonella_phage	6.4e-197	48.2
SQH88100.1\|1338090_1338711_-	Integration, recombination (Phage or Prophage)	A0A0S2SY31	Pseudomonas_phage	9.3e-55	56.8
1338556:1338570	attR	NA	NA	NA	NA
SQH88101.1\|1338710_1339454_-	Recombinational DNA repair protein RecT (prophage associated)	A0A0M4RD39	Salmonella_phage	3.7e-66	68.8
SQH88102.1\|1339459_1339756_-	Host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	1.3e-46	95.9
SQH88103.1\|1339836_1339986_-	Uncharacterised protein	NA	NA	NA	NA
SQH88104.1\|1339978_1340116_-	Uncharacterised protein	NA	NA	NA	NA
SQH88105.1\|1340343_1340787_-	transcriptional repressor DicA	NA	NA	NA	NA
SQH88106.1\|1340815_1341067_+	Uncharacterized protein conserved in bacteria, prophage-related	NA	NA	NA	NA
SQH88107.1\|1341087_1341411_+	repressor	H6WRX6	Salmonella_phage	1.6e-26	58.2
SQH88108.1\|1341502_1341712_+\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	NA	NA	NA	NA
SQH88109.1\|1341674_1342388_+	DNA-binding protein	A5LH71	Enterobacteria_phage	1.8e-41	56.2
SQH88110.1\|1342384_1343077_+	replication protein P	G8C7U6	Escherichia_phage	6.7e-78	59.3
SQH88111.1\|1343090_1343729_+	Uncharacterised protein	M1F3E2	Salmonella_phage	2.0e-121	96.7
SQH88112.1\|1343725_1344736_+	EaD	A0A0M5M1J9	Salmonella_phage	2.4e-52	99.1
SQH88113.1\|1344738_1344924_+	Uncharacterised protein	NA	NA	NA	NA
SQH88114.1\|1344927_1345206_+	Gp38	Q1MVF7	Enterobacteria_phage	2.5e-15	45.7
SQH88115.1\|1345202_1345568_+	Eaa protein	A0A2I6PID9	Escherichia_phage	4.8e-35	86.3
SQH88116.1\|1345627_1345894_+	bacteriophage protein	S4TNF2	Salmonella_phage	5.7e-46	97.7
SQH88117.1\|1346049_1346283_+	Gifsy-1 prophage DinI	H6WRY5	Salmonella_phage	4.9e-33	87.0
SQH88118.1\|1346394_1346586_+	Uncharacterised protein	NA	NA	NA	NA
SQH88119.1\|1346643_1347240_+	IrsA	A0A0U2RT94	Escherichia_phage	4.4e-54	50.3
SQH88120.1\|1347239_1347446_+	Phage protein	S4TNP0	Salmonella_phage	3.9e-34	98.5
SQH88121.1\|1347448_1348060_+	bacteriophage Lambda NinG protein	A0A0M4RU10	Salmonella_phage	2.7e-91	98.5
SQH88122.1\|1348056_1348194_+	DNA breaking-rejoining protein	A0A0M5M7B2	Salmonella_phage	1.7e-09	84.2
SQH88123.1\|1348193_1349003_+	molecular chaperone	M9NZB0	Enterobacteria_phage	2.7e-110	71.4
SQH88124.1\|1349785_1350595_+	Colicin-M	NA	NA	NA	NA
SQH88125.1\|1350631_1350973_-	Microcin-M immunity protein	NA	NA	NA	NA
SQH88126.1\|1351218_1351608_+	prophage membrane protein	K7PHB9	Enterobacterial_phage	4.8e-41	72.5
SQH88127.1\|1351594_1351876_+	prophage membrane protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
SQH88128.1\|1351875_1352502_+	Phage endolysin	Q858F0	Salmonella_phage	1.6e-94	80.7
SQH88129.1\|1352498_1353050_+\|tail	phage-tail assembly protein	NA	NA	NA	NA
SQH88130.1\|1353039_1353453_+	Uncharacterised protein	NA	NA	NA	NA
SQH88131.1\|1353513_1354254_+	putative bacteriophage protein	A0A1I9KFG9	Aeromonas_phage	2.1e-13	28.9
SQH88132.1\|1354255_1355587_+	Mu-like prophage FluMu protein gp28	A0A0U2JTW9	Escherichia_phage	1.2e-152	59.7
SQH88133.1\|1355598_1357020_+	Protein of uncharacterised function (DUF1073)	A0A0U2S5X9	Escherichia_phage	1.4e-90	37.7
SQH88134.1\|1357016_1357841_+	Uncharacterised protein	A0A0U2I1R8	Escherichia_phage	1.9e-47	39.7
SQH88135.1\|1357853_1359470_+	nudix hydrolase	NA	NA	NA	NA
SQH88136.1\|1359485_1360346_+	Uncharacterised protein	NA	NA	NA	NA
SQH88137.1\|1360362_1361394_+	Uncharacterised protein	A0A0U2QQI2	Escherichia_phage	1.2e-75	46.6
SQH88138.1\|1361462_1361945_+	Uncharacterised protein	A0A0U2SAX6	Escherichia_phage	1.9e-10	32.8
SQH88139.1\|1361941_1362370_+	Uncharacterised protein	A0A0U2S646	Escherichia_phage	5.1e-20	38.4
SQH88140.1\|1362366_1362801_+	Uncharacterised protein	NA	NA	NA	NA
SQH88141.1\|1362784_1363726_+	Uncharacterised protein	A0A0U2SH76	Escherichia_phage	3.8e-52	38.3
SQH88142.1\|1363730_1365125_+	Uncharacterised protein	A0A0U2KD19	Escherichia_phage	4.6e-70	36.8
SQH88143.1\|1365128_1365566_+	Uncharacterised protein	NA	NA	NA	NA
SQH88144.1\|1365565_1366153_+	Uncharacterised protein	NA	NA	NA	NA
SQH88145.1\|1366276_1368319_+	membrane-bound lytic transglycosylase F	I6ZXX9	Escherichia_phage	6.7e-09	35.8
SQH88146.1\|1368318_1369035_+	Uncharacterised protein	A0A0U2JGI7	Escherichia_phage	1.7e-28	39.1
SQH88147.1\|1369031_1369307_+	Uncharacterised protein	A0A0U2JGJ3	Escherichia_phage	1.0e-05	31.8
SQH88148.1\|1369306_1370359_+	Uncharacterised protein	NA	NA	NA	NA
SQH88149.1\|1370355_1371072_+	Uncharacterised protein	NA	NA	NA	NA
SQH88150.1\|1371068_1371401_+	Uncharacterised protein	NA	NA	NA	NA
SQH88151.1\|1371397_1372624_+	Uncharacterized homolog of phage Mu protein gp47	A0A0U2RJZ0	Escherichia_phage	3.6e-151	65.4
SQH88152.1\|1372607_1373234_+	Uncharacterised protein	A0A0U2RK03	Escherichia_phage	9.6e-92	71.2
SQH88153.1\|1373230_1374940_+\|tail	side tail fiber protein	A0A0U2SAV1	Escherichia_phage	2.0e-91	66.0
SQH88154.1\|1374936_1375761_+	UPF0189 protein LA_4133	A0A0M4QWS3	Salmonella_phage	4.9e-152	94.5

DBSCAN-SWA_6

1839505 : 1848677

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH88558.1\|1839505_1840453_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
SQH88559.1\|1840436_1841168_+	putative permease transmembrane component	NA	NA	NA	NA
SQH88560.1\|1841148_1841256_-	membrane protein	NA	NA	NA	NA
SQH88561.1\|1841315_1842047_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
SQH88562.1\|1842269_1843955_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
SQH88563.1\|1843951_1844671_+	two-component system response regulator	NA	NA	NA	NA
SQH88564.1\|1844717_1845185_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
SQH88565.1\|1845241_1845772_-	lipoprotein	NA	NA	NA	NA
SQH88566.1\|1845943_1846402_-	lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
SQH88567.1\|1846643_1848677_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_7

2100197 : 2144068

Enterobacteria_phage(22.22%)

integrase,terminase,transposase,tRNA

attL 2121998:2122012|attR 2140328:2140342

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH88810.1\|2100197_2101931_-\|tRNA	arginyl-tRNA synthetase	A0A2K9L6Z2	Tupanvirus	4.9e-85	33.4
SQH88811.1\|2102167_2102737_+	Protein yecM	NA	NA	NA	NA
SQH88812.1\|2102756_2103503_+	copper homeostasis protein CutC	NA	NA	NA	NA
SQH88813.1\|2103738_2104710_-\|tRNA	tRNA (5-methoxyuridine) 34 synthase	NA	NA	NA	NA
SQH88814.1\|2104706_2105450_-\|tRNA	tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase	F5B419	Synechococcus_phage	5.4e-25	30.9
SQH88815.1\|2105490_2105886_-	membrane protein	NA	NA	NA	NA
SQH88816.1\|2105938_2106757_-	Protein of uncharacterised function DUF72	Q859D1	Escherichia_coli_phage	4.5e-57	80.3
SQH88817.1\|2106753_2107320_-	putative isochorismatase hydrolase	NA	NA	NA	NA
SQH88818.1\|2107644_2109417_+\|tRNA	aspartyl-tRNA synthetase	NA	NA	NA	NA
SQH88819.1\|2109519_2109972_+	dATP pyrophosphohydrolase	NA	NA	NA	NA
SQH88820.1\|2110001_2110742_+	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA
SQH88821.1\|2110778_2111300_+	crossover junction endodeoxyribonuclease	G3MA90	Bacillus_virus	2.6e-10	35.1
SQH88822.1\|2111301_2111901_-	protein yebB	NA	NA	NA	NA
SQH88823.1\|2112528_2113512_-	cytoplasmic protein	NA	NA	NA	NA
SQH88824.1\|2113844_2114456_+	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA
SQH88825.1\|2114464_2115475_+	Holliday junction DNA helicase	A0A127AWE7	Bacillus_phage	2.4e-07	25.9
SQH88826.1\|2115553_2116339_-	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA
SQH88827.1\|2116335_2117091_-	high-affinity zinc transporter ATPase	G3M9Y6	Bacillus_virus	8.5e-18	29.4
SQH88828.1\|2117112_2118114_+	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA
SQH88829.1\|2118129_2119449_+	Cell wall endopeptidase family M23/M37	A8ATH6	Listeria_phage	2.6e-14	40.9
SQH88830.1\|2119565_2120534_+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
SQH88831.1\|2120534_2121218_-\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
SQH88832.1\|2121388_2121790_-\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH88833.1\|2121924_2123367_-	pyruvate kinase A	NA	NA	NA	NA
2121998:2122012	attL	NA	NA	NA	NA
SQH88834.1\|2123490_2124360_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
SQH88835.1\|2124701_2126177_+	glucose 6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.6e-79	37.5
SQH88836.1\|2126411_2128223_+	6-phosphogluconate dehydratase	NA	NA	NA	NA
SQH88837.1\|2128260_2128902_+	KHG/KDPG aldolase	NA	NA	NA	NA
SQH88838.1\|2129001_2130180_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
SQH88839.1\|2130310_2130601_+	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA
SQH88840.1\|2130668_2131022_+	protein YebF	NA	NA	NA	NA
SQH88841.1\|2131115_2131775_+	inner membrane protein YebE	NA	NA	NA	NA
SQH88842.1\|2131987_2134039_+	oligopeptidase	NA	NA	NA	NA
SQH88843.1\|2134073_2134772_-	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.8e-07	40.4
SQH88844.1\|2134795_2135452_-	Putative amido hydrolase	NA	NA	NA	NA
SQH88845.1\|2135559_2135790_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
SQH88846.1\|2135927_2136302_+	Copper resistance protein CopC	NA	NA	NA	NA
SQH88847.1\|2136302_2137178_+	membrane protein	NA	NA	NA	NA
SQH88848.1\|2137194_2137548_+	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
SQH88849.1\|2137930_2139010_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.7e-99	52.2
SQH88850.1\|2139006_2140167_-	exodeoxyribonuclease 8	Q9QF34	Lambdoid_phage	1.2e-55	66.7
SQH88851.1\|2140426_2140960_+	exported phage protein	A0A291LBG9	Klebsiella_phage	1.6e-10	42.4
2140328:2140342	attR	NA	NA	NA	NA
SQH88852.1\|2141216_2141384_-	lytic enzyme	NA	NA	NA	NA
SQH88853.1\|2141686_2142178_+\|terminase	terminase	Q9EYD0	Enterobacteria_phage	7.6e-44	56.2
SQH88854.1\|2142164_2142344_+\|terminase	phage terminase large subunit	Q9EYD1	Enterobacteria_phage	1.7e-06	51.1
SQH88855.1\|2142363_2142738_+\|terminase	phage terminase large subunit	Q8VNN7	Enterobacteria_phage	2.6e-60	83.7
SQH88856.1\|2142730_2144068_+	Tail Fiber Protein	E5G6P0	Salmonella_phage	7.6e-78	52.1

DBSCAN-SWA_8

2806575 : 2865074

Enterobacteria_phage(35.19%)

portal,tRNA,integrase,terminase,transposase,tail,protease

attL 2800963:2800981|attR 2841322:2841340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2800963:2800981	attL	NA	NA	NA	NA
SQH89499.1\|2806575_2806815_+	virulence protein	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
SQH89500.1\|2807025_2807190_-\|transposase	transposase	NA	NA	NA	NA
SQH89501.1\|2807687_2808497_+	cytolethal distending toxin subunit CdtB	A5LH53	Enterobacteria_phage	2.1e-62	50.0
SQH89502.1\|2808569_2808947_+	Protein of uncharacterised function (DUF1353)	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
SQH89503.1\|2809095_2809638_-	Predicted lysozyme (DUF847)	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
SQH89504.1\|2809821_2810550_-	Pertussis toxin, subunit 1 subfamily	A0A0U2KD26	Escherichia_phage	1.6e-61	52.5
SQH89505.1\|2810566_2810980_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	7.1e-19	37.7
SQH89506.1\|2812028_2813153_-	bacteriophage protein	NA	NA	NA	NA
SQH89507.1\|2813598_2813811_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7
SQH89508.1\|2814064_2814736_+	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	8.2e-81	59.9
SQH89509.1\|2815055_2817158_-	SspH1	Q9MBL9	Phage_Gifsy-2	1.0e-28	48.5
SQH89510.1\|2817329_2817851_-\|integrase	integrase	A0A077SLK2	Escherichia_phage	4.0e-91	89.6
SQH89511.1\|2817838_2818099_-\|integrase	integrase	A0A077SLK2	Escherichia_phage	2.4e-12	76.6
SQH89512.1\|2818052_2818355_-	regulator	A0A077SLK2	Escherichia_phage	1.2e-39	81.5
SQH89513.1\|2822748_2826144_-\|tail	Phage tail fiber protein	A0A0K2FI38	Escherichia_phage	0.0e+00	75.5
SQH89514.1\|2826206_2826713_-\|tail	tail protein	A5LH42	Enterobacteria_phage	1.4e-69	80.4
SQH89515.1\|2826751_2827489_-	Tail fiber component K	K7PLW1	Enterobacteria_phage	6.1e-130	85.8
SQH89516.1\|2827495_2828194_-\|tail	Minor tail protein L	A0A1B5FP81	Escherichia_phage	9.3e-104	75.9
SQH89517.1\|2828203_2828533_-\|tail	tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
SQH89518.1\|2828535_2831577_-\|tail	tail protein	A0A291AWX1	Escherichia_phage	4.4e-291	64.2
SQH89519.1\|2831548_2831863_-\|tail	minor tail-like protein	A5LH37	Enterobacteria_phage	1.1e-30	63.8
SQH89520.1\|2831883_2832279_-\|tail	minor tail protein	A5LH36	Enterobacteria_phage	2.3e-30	56.5
SQH89521.1\|2832329_2833076_-\|tail	putative tail component of prophage	A0A291AWU6	Escherichia_phage	2.1e-98	76.5
SQH89522.1\|2833086_2833488_-\|tail	phage minor tail protein U	A0A291AWY2	Escherichia_phage	1.6e-47	65.4
SQH89523.1\|2833484_2834069_-\|tail	prophage minor tail protein Z	A5LH33	Enterobacteria_phage	3.4e-75	77.1
SQH89524.1\|2834072_2834315_-	ATP-binding protein	K7PH43	Enterobacteria_phage	1.0e-09	41.2
SQH89525.1\|2834340_2834664_-	recombinase RecA	K7PLV6	Enterobacteria_phage	1.0e-28	63.2
SQH89526.1\|2834752_2836822_-\|protease	ATP-dependent protease	K7PGT6	Enterobacteria_phage	1.9e-274	71.7
SQH89527.1\|2836784_2838320_-\|portal	phage portal protein, lambda family protein	K7PHM5	Enterobacterial_phage	3.7e-177	63.1
SQH89528.1\|2838316_2838523_-	primosomal replication protein PriB/PriC domain protein	A5LH28	Enterobacteria_phage	1.1e-07	48.6
SQH89529.1\|2838519_2839155_-\|terminase	phage terminase large subunit	A0A291AWY5	Escherichia_phage	1.7e-64	53.7
SQH89530.1\|2839162_2840629_-\|terminase	phage terminase large subunit	Q9EYD1	Enterobacteria_phage	7.5e-212	74.9
SQH89531.1\|2840615_2841107_-\|terminase	terminase	Q9EYD0	Enterobacteria_phage	4.5e-44	57.5
SQH89532.1\|2841403_2841613_-	Uncharacterised protein	K7PJU3	Enterobacteria_phage	2.9e-29	86.6
2841322:2841340	attR	NA	NA	NA	NA
SQH89533.1\|2841674_2841920_-	Uncharacterised protein	K7PKT0	Enterobacteria_phage	2.5e-19	56.8
SQH89534.1\|2841977_2842529_-	Uncharacterised protein	NA	NA	NA	NA
SQH89535.1\|2842583_2843126_-\|tail	phage-tail assembly protein	NA	NA	NA	NA
SQH89536.1\|2843122_2843737_-	bacteriophage protein	Q8HA86	Salmonella_phage	2.8e-96	84.3
SQH89537.1\|2843736_2844018_-	prophage membrane protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
SQH89538.1\|2844004_2844394_-	prophage membrane protein	K7PHB9	Enterobacterial_phage	1.1e-40	71.8
SQH89539.1\|2844614_2845751_+	Uncharacterised protein	NA	NA	NA	NA
SQH89540.1\|2845761_2846184_+	Uncharacterised protein	NA	NA	NA	NA
SQH89541.1\|2846176_2846812_+	Uncharacterised protein	NA	NA	NA	NA
SQH89542.1\|2846808_2847174_-	phage antiterminator	A5LH77	Enterobacteria_phage	3.3e-52	82.5
SQH89543.1\|2847191_2848181_-	putative cytoplasmic protein	A0A1C9IHZ5	Salmonella_phage	1.6e-189	97.6
SQH89544.1\|2848188_2849049_-	phage protein	A0A192Y6F8	Salmonella_phage	1.5e-159	98.3
SQH89545.1\|2849065_2849455_-	crossover junction endodeoxyribonuclease	K7PH72	Enterobacteria_phage	6.0e-60	85.3
SQH89546.1\|2849451_2850105_-	DNA adenine methylase	A5LH72	Enterobacteria_phage	4.2e-114	88.9
SQH89547.1\|2850104_2850587_-	phage protein	Q8HA95	Salmonella_phage	1.6e-86	98.8
SQH89548.1\|2850588_2851548_-	Replication protein O	U5P0A0	Shigella_phage	4.1e-118	81.2
SQH89549.1\|2851544_2851769_-	phage protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
SQH89550.1\|2852919_2853474_-	putative prophage product	A0A1C9II13	Salmonella_phage	2.0e-101	99.5
SQH89551.1\|2853502_2853727_-	DNA-binding protein	A0A1C9IHV8	Salmonella_phage	2.1e-33	98.6
SQH89552.1\|2853824_2854520_+	regulatory protein	Q8HAA0	Salmonella_phage	8.6e-126	99.1
SQH89553.1\|2854932_2855163_-	Uncharacterised protein	NA	NA	NA	NA
SQH89554.1\|2855460_2856375_+	phage encoded recombination associated protein	S4TWL4	Salmonella_phage	2.2e-97	59.2
SQH89555.1\|2856469_2857009_+	phage protein	A0A192Y8M4	Salmonella_phage	1.0e-97	99.4
SQH89556.1\|2857079_2857952_+	EaD	A0A0M5M1J9	Salmonella_phage	5.5e-53	68.9
SQH89557.1\|2858207_2858501_+	Gp43	A0A1V0E5L2	Salmonella_phage	2.7e-49	96.9
SQH89558.1\|2858497_2859496_+	Eaa protein	H6WRY2	Salmonella_phage	3.6e-101	78.6
SQH89559.1\|2859545_2859782_+	excisionase	NA	NA	NA	NA
SQH89560.1\|2859771_2860914_+	Integrase	O21929	Phage_21	3.1e-173	80.0
SQH89561.1\|2861027_2862278_-	isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7
SQH89562.1\|2862377_2863115_+	putative ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA
SQH89563.1\|2863111_2863441_+	putative secreted protein	NA	NA	NA	NA
SQH89564.1\|2863452_2863914_+	mutT family protein	NA	NA	NA	NA
SQH89565.1\|2863967_2865074_+\|tRNA	tRNA-specific 2-thiouridylase MnmA	NA	NA	NA	NA

DBSCAN-SWA_9

2985031 : 3029299

Escherichia_phage(33.33%)

terminase,transposase,tail,capsid,lysis,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH89681.1\|2985031_2985199_-	Stress-induced bacterial acidophilic repeat motif	Q9KX95	Enterobacteria_phage	1.4e-05	92.6
SQH89682.1\|2986291_2987122_+	Cytolethal distending toxin subunit A precursor	G1BEM3	Escherichia_phage	8.6e-48	43.2
SQH89683.1\|2987135_2987963_+	cytolethal distending toxin subunit CdtB	A5LH53	Enterobacteria_phage	3.9e-93	62.3
SQH89684.1\|2987959_2988517_+	Cytolethal distending toxin A/C family	G1BEM5	Escherichia_phage	4.9e-39	48.8
SQH89685.1\|2988785_2988968_+\|transposase	IS3 transposase	NA	NA	NA	NA
SQH89686.1\|2989851_2990247_-	Uncharacterized protein y4iH Flags: Precursor	I1TQ41	Pseudomonas_phage	2.7e-15	39.0
SQH89687.1\|2990378_2992433_-	Domain of uncharacterised function (DUF303)	H6WZJ9	Escherichia_phage	5.8e-178	57.7
SQH89688.1\|2992442_2992676_-	Uncharacterised protein	NA	NA	NA	NA
SQH89689.1\|2992700_2993324_-\|tail	phage tail assembly protein	Q9LA61	Enterobacterial_phage	4.5e-41	43.6
SQH89690.1\|2993334_2994132_-\|tail	Phage tail fiber protein	A0A2D1UII2	Escherichia_phage	4.4e-17	44.2
SQH89691.1\|2994170_2997494_-\|tail	Phage tail fiber protein	K7PKJ2	Enterobacteria_phage	0.0e+00	76.0
SQH89692.1\|2997556_2998063_-\|tail	tail protein	A5LH42	Enterobacteria_phage	1.4e-69	80.4
SQH89693.1\|2998101_2998839_-	Tail fiber component K	K7PLW1	Enterobacteria_phage	6.1e-130	85.8
SQH89694.1\|2998845_2999544_-\|tail	Minor tail protein L	A0A1B5FP81	Escherichia_phage	9.3e-104	75.9
SQH89695.1\|2999553_2999883_-\|tail	tail protein	A5LH39	Enterobacteria_phage	2.1e-42	70.4
SQH89696.1\|2999888_3002993_-\|tail	tail protein	A5LH38	Enterobacteria_phage	2.3e-218	49.3
SQH89697.1\|3002973_3003291_-\|tail	Gifsy-2 prophage putative minor tail protein	A5LH37	Enterobacteria_phage	5.6e-24	55.7
SQH89698.1\|3003299_3003698_-\|tail	minor tail protein	A0A291AWW5	Escherichia_phage	1.3e-30	53.8
SQH89699.1\|3003746_3004508_-\|tail	major tail protein	A0A291AWU6	Escherichia_phage	6.4e-90	67.5
SQH89700.1\|3004519_3004924_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	1.8e-38	59.7
SQH89701.1\|3004920_3005484_-\|tail	prophage minor tail protein Z	Q9G063	Phage_Gifsy-2	1.4e-09	80.4
SQH89702.1\|3005473_3005764_-	ATP-binding protein	NA	NA	NA	NA
SQH89703.1\|3005756_3006080_-	recombinase RecA	K7PLV6	Enterobacteria_phage	5.5e-27	57.5
SQH89704.1\|3006164_3008219_-\|protease	ATP dependent Clp protease	A0A291AWT6	Escherichia_phage	4.2e-261	68.9
SQH89705.1\|3008169_3009717_-\|capsid	capsid protein	K7PHM5	Enterobacterial_phage	8.2e-177	64.0
SQH89706.1\|3009713_3009920_-	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	8.5e-05	53.3
SQH89707.1\|3009916_3012058_-\|terminase	phage terminase large subunit	A5LH27	Enterobacteria_phage	2.5e-288	71.7
SQH89708.1\|3012011_3012551_-	Gifsy-2 prophage protein	A0A291AWV8	Escherichia_phage	5.1e-33	47.5
SQH89709.1\|3012775_3013240_-\|lysis	bacteriophage lysis protein	S4TNN7	Salmonella_phage	5.0e-53	72.7
SQH89710.1\|3013452_3013992_-	Phage endolysin R	S5MQK2	Escherichia_phage	9.8e-77	72.6
SQH89711.1\|3013969_3014188_-	Lysis protein S	H9C183	Pectobacterium_phage	7.3e-07	46.4
SQH89712.1\|3015021_3015705_+	virulence protein	Q9MBM0	Phage_Gifsy-2	3.6e-84	69.2
SQH89713.1\|3015868_3016684_-	Phage antitermination protein Q	A0A1B5FPA5	Escherichia_phage	8.9e-106	75.2
SQH89714.1\|3016680_3017001_-	Uncharacterised protein	NA	NA	NA	NA
SQH89715.1\|3017003_3018875_-	gp61	I6S1U6	Salmonella_phage	9.2e-223	58.6
SQH89716.1\|3018877_3018985_-	Uncharacterised protein	NA	NA	NA	NA
SQH89717.1\|3018981_3019986_-	replication protein O	W8CYG5	Bacillus_phage	8.3e-29	40.9
SQH89718.1\|3019982_3020297_-	Uncharacterised protein	NA	NA	NA	NA
SQH89719.1\|3020293_3020491_-	Uncharacterised protein	NA	NA	NA	NA
SQH89720.1\|3020492_3020732_-	Uncharacterised protein	NA	NA	NA	NA
SQH89721.1\|3020837_3021293_+	transcriptional repressor DicA	NA	NA	NA	NA
SQH89722.1\|3021402_3021945_+	regulatory protein Cro (antirepressor)	Q8W649	Enterobacteria_phage	2.0e-08	34.0
SQH89723.1\|3022073_3022439_+	Uncharacterised protein	NA	NA	NA	NA
SQH89724.1\|3022512_3022707_+	Uncharacterised protein	NA	NA	NA	NA
SQH89725.1\|3022965_3023490_+	Uncharacterised protein	L0AQZ0	Klebsiella_phage	1.9e-37	46.1
SQH89726.1\|3023754_3023964_+	Uncharacterised protein	NA	NA	NA	NA
SQH89727.1\|3023944_3024304_+	Uncharacterised protein	A0A1B5FPB3	Escherichia_phage	8.9e-26	51.3
SQH89728.1\|3024303_3024540_+	Uncharacterised protein	A0A286SGR4	Klebsiella_phage	2.4e-19	62.9
SQH89729.1\|3024529_3024925_+	Uncharacterised protein	A0A286S1S2	Klebsiella_phage	3.3e-50	73.9
SQH89730.1\|3024936_3025785_+	bacteriophage protein	F1C5A3	Cronobacter_phage	4.7e-126	77.5
SQH89731.1\|3025781_3025961_+	Mobile element protein	A0A088C4R7	Shewanella_sp._phage	1.2e-07	55.6
SQH89732.1\|3025899_3026349_+	Mobile element protein	NA	NA	NA	NA
SQH89733.1\|3026345_3026570_+	Uncharacterised protein	A0A1B5FPG2	Escherichia_phage	6.6e-19	67.6
SQH89734.1\|3026566_3026779_+	Uncharacterised protein	A0A286S2B6	Klebsiella_phage	4.0e-26	80.0
SQH89735.1\|3026775_3027237_+	ATPase involved in DNA repair	A0A1B5FPC7	Escherichia_phage	2.7e-43	52.2
SQH89736.1\|3027236_3027554_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	NA	NA	NA	NA
SQH89737.1\|3027550_3027697_+	Putative bacteriophage protein	A0A1B5FPC2	Escherichia_phage	2.2e-15	75.0
SQH89738.1\|3027704_3027953_+	excisionase	Q859D3	Escherichia_coli_phage	9.5e-27	73.0
SQH89739.1\|3028006_3029299_+	Integrase	Q8W658	Enterobacteria_phage	1.1e-187	72.9

DBSCAN-SWA_10

3158521 : 3166608

Enterobacteria_phage(14.29%)

integrase,transposase,protease

attL 3153077:3153091|attR 3165344:3165358

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3153077:3153091	attL	NA	NA	NA	NA
SQH89850.1\|3158521_3159205_+\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
SQH89851.1\|3159594_3160053_-\|transposase	transposase for IS200	I4AZI8	Saccharomonospora_phage	7.7e-14	31.5
SQH89852.1\|3160244_3162521_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
SQH89853.1\|3162551_3162872_-\|protease	ATP-dependent clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
SQH89854.1\|3163195_3163417_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
SQH89855.1\|3163546_3165493_-	ABC transporter	G9BWD6	Planktothrix_phage	9.1e-40	42.3
3165344:3165358	attR	NA	NA	NA	NA
SQH89856.1\|3165489_3166608_-	Macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_11

3250071 : 3297970

Enterobacteria_phage(12.5%)

integrase,transposase

attL 3247209:3247224|attR 3279136:3279151

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3247209:3247224	attL	NA	NA	NA	NA
SQH89938.1\|3250071_3250473_+\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQH89939.1\|3250643_3251327_+\|integrase	integrase	Q6H9S3	Enterobacteria_phage	1.2e-18	34.5
SQH89940.1\|3251327_3252299_-	glycosyl transferase	NA	NA	NA	NA
SQH89941.1\|3252328_3254473_-	ATP-dependent helicase	A0A127AW80	Bacillus_phage	7.4e-43	26.7
SQH89942.1\|3254680_3256042_-	ATP-dependent RNA helicase rhlE	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.9e-53	34.2
SQH89943.1\|3256271_3256946_+	HTH-type transcriptional regulator ybiH	NA	NA	NA	NA
SQH89944.1\|3256945_3257941_+	HlyD family secretion protein	NA	NA	NA	NA
SQH89945.1\|3257933_3259670_+	putative ABC transporter ATP-binding protein MA_1747	W6JKT0	Anomala_cuprea_entomopoxvirus	3.5e-19	30.9
SQH89946.1\|3259662_3260793_+	ABC transport system permease component YbhS	NA	NA	NA	NA
SQH89947.1\|3260908_3262015_+	ABC transport system permease component YbhR	NA	NA	NA	NA
SQH89948.1\|3261976_3262387_-	putative inner membrane protein	NA	NA	NA	NA
SQH89949.1\|3262519_3263278_+	Endonuclease/Exonuclease/ phosphatase family protein	NA	NA	NA	NA
SQH89950.1\|3263274_3264516_+	phospholipase	NA	NA	NA	NA
SQH89951.1\|3264515_3265478_+	Inner membrane protein YbhQ	NA	NA	NA	NA
SQH89952.1\|3265480_3265873_-	membrane protein	NA	NA	NA	NA
SQH89953.1\|3265869_3266040_-	membrane protein	NA	NA	NA	NA
SQH89954.1\|3266047_3266734_-	inner membrane protein	NA	NA	NA	NA
SQH89955.1\|3266679_3267201_-	membrane protein	NA	NA	NA	NA
SQH89956.1\|3267532_3268237_-	membrane protein	NA	NA	NA	NA
SQH89957.1\|3268284_3268737_-	molybdopterin converting factor, subunit 2	NA	NA	NA	NA
SQH89958.1\|3268738_3268984_-	molybdopterin converting factor subunit 1	NA	NA	NA	NA
SQH89959.1\|3268976_3269420_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA
SQH89960.1\|3269464_3269977_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA
SQH89961.1\|3271384_3272293_+	protein YbhK	A1IMD5	Streptococcus_phage	2.7e-26	29.9
SQH89962.1\|3272384_3274652_-	E3 ubiquitin-protein ligase SlrP	Q9MBL9	Phage_Gifsy-2	1.1e-15	43.0
SQH89963.1\|3275141_3277163_-	excision nuclease ABC subunit B	NA	NA	NA	NA
SQH89964.1\|3277813_3278500_-	dithiobiotin synthetase	NA	NA	NA	NA
SQH89965.1\|3278492_3279248_-	biotin biosynthesis protein BioC	NA	NA	NA	NA
3279136:3279151	attR	NA	NA	NA	NA
SQH89966.1\|3279231_3280389_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
SQH89967.1\|3280385_3281426_-	biotin synthetase	NA	NA	NA	NA
SQH89968.1\|3281512_3282802_+	adenosylmethionine--8-amino-7-oxononanoate aminotransferase	A0A1V0SKB7	Klosneuvirus	7.7e-19	28.5
SQH89969.1\|3282859_3283336_+	UPF0098 protein ybhB	NA	NA	NA	NA
SQH89970.1\|3283420_3284941_-	histidine ammonia-lyase	A0A1V0S940	Catovirus	1.1e-80	39.8
SQH89971.1\|3284937_3286629_-	urocanate hydratase	NA	NA	NA	NA
SQH89972.1\|3286825_3287551_-	histidine utilization repressor	NA	NA	NA	NA
SQH89973.1\|3287595_3288537_-	formimidoylglutamase	NA	NA	NA	NA
SQH89974.1\|3288533_3289703_-	imidazolonepropionase	NA	NA	NA	NA
SQH89975.1\|3290379_3290742_+	translocase	I1TED9	Salmonella_phage	6.6e-61	98.3
SQH89976.1\|3290738_3291656_+	bactoprenol glucosyl transferase	I1TED8	Salmonella_phage	1.4e-168	97.0
SQH89977.1\|3291655_3293113_+	putative membrane protein	NA	NA	NA	NA
SQH89978.1\|3293959_3294130_+\|transposase	transposase	U5P4I9	Shigella_phage	6.1e-17	79.6
SQH89979.1\|3294232_3294982_+	Transposase and inactivated derivatives, IS30 family	NA	NA	NA	NA
SQH89980.1\|3295105_3295372_+	Transposase and inactivated derivatives, IS30 family	Q9MBM9	Staphylococcus_prophage	1.1e-15	49.3
SQH89981.1\|3295896_3296334_+\|transposase	transposase IS3	U5P429	Shigella_phage	5.3e-57	85.7
SQH89982.1\|3296389_3296623_+\|transposase	transposase IS1113	F6MIM4	Haemophilus_phage	1.2e-10	72.5
SQH89983.1\|3296595_3297597_+\|transposase	transposase IS1113	A0A218MNI5	uncultured_virus	5.3e-44	46.4
SQH89984.1\|3297661_3297970_+	Mobile element protein	Q9MCR4	Enterobacteria_phage	4.9e-49	94.1

DBSCAN-SWA_12

3496954 : 3536872

Salmonella_phage(49.15%)

holin,integrase,head,terminase,tail,capsid,lysis

attL 3493677:3493723|attR 3536886:3536932

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3493677:3493723	attL	NA	NA	NA	NA
SQH90169.1\|3496954_3497239_-	Error-prone repair protein UmuD	A0A1W6JNS2	Morganella_phage	9.5e-15	58.7
SQH90170.1\|3497475_3498771_-	Uncharacterised protein	I6R0Q9	Salmonella_phage	3.0e-156	63.4
SQH90171.1\|3498781_3499741_-	Uncharacterised protein	H6WRW5	Salmonella_phage	6.2e-183	99.4
SQH90172.1\|3499742_3502457_-\|tail	tail protein	S4TTF5	Salmonella_phage	0.0e+00	93.3
SQH90173.1\|3502456_3502855_-	Uncharacterised protein	S4TR39	Salmonella_phage	5.0e-70	93.9
SQH90174.1\|3502861_3503446_-	Uncharacterised protein	S4TND4	Salmonella_phage	3.2e-105	97.4
SQH90175.1\|3503445_3504039_-	Uncharacterised protein	S4TSP7	Salmonella_phage	1.9e-105	93.9
SQH90176.1\|3504206_3504404_+	Uncharacterised protein	H6WRV6	Salmonella_phage	5.6e-30	100.0
SQH90177.1\|3504387_3504600_-	Uncharacterised protein	H6WRV5	Salmonella_phage	4.4e-33	100.0
SQH90178.1\|3504641_3507953_-\|tail	tail length tape measure protein	S4TTF9	Salmonella_phage	0.0e+00	82.0
SQH90179.1\|3507956_3508334_-	Uncharacterised protein	S4TR42	Salmonella_phage	4.9e-43	77.3
SQH90180.1\|3508390_3508597_-\|tail	phage tail protein	Q9MCS5	Enterobacteria_phage	1.8e-26	85.3
SQH90181.1\|3508677_3509067_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	7.3e-58	85.3
SQH90182.1\|3509094_3509799_-\|tail	tail protein	K7PHL2	Enterobacterial_phage	1.4e-94	76.1
SQH90183.1\|3509856_3510204_-	Protein of uncharacterised function (DUF3168)	S4TTG3	Salmonella_phage	7.5e-46	78.8
SQH90184.1\|3510200_3510650_-	phage protein, HK97 gp10 family	S4TR46	Salmonella_phage	1.1e-73	97.3
SQH90185.1\|3510646_3510985_-\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	70.5
SQH90186.1\|3510994_3511321_-	phage protein	K7PKT4	Enterobacteria_phage	1.2e-48	84.3
SQH90187.1\|3511320_3511572_-	Uncharacterised protein	K7PHI6	Enterobacteria_phage	2.8e-10	66.0
SQH90188.1\|3511615_3512833_-\|capsid	capsid protein	K7PM57	Enterobacteria_phage	2.1e-199	88.6
SQH90189.1\|3512842_3513691_-	peptidase	K7PH05	Enterobacteria_phage	2.0e-132	88.9
SQH90190.1\|3513704_3515009_-	histone H1	K7PJU5	Enterobacteria_phage	5.6e-235	94.0
SQH90191.1\|3515008_3516745_-\|terminase	terminase	K7PKT2	Enterobacteria_phage	0.0e+00	97.9
SQH90192.1\|3516744_3517218_-\|terminase	terminase	K7PHI2	Enterobacteria_phage	1.5e-84	96.8
SQH90193.1\|3517374_3517725_-	HNH endonuclease	K7PHK9	Enterobacteria_phage	2.5e-49	77.6
SQH90194.1\|3517809_3518340_-	phage protein	A0A2H4FQV0	Salmonella_phage	1.8e-91	98.3
SQH90195.1\|3518552_3519023_-\|lysis	bacteriophage lysis protein	Q76H63	Enterobacteria_phage	1.9e-60	84.1
SQH90196.1\|3519019_3519457_-	phage lysozyme	Q5G8R3	Enterobacteria_phage	6.3e-74	97.9
SQH90197.1\|3519440_3519767_-\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
SQH90198.1\|3520201_3520825_-	Phage antitermination protein Q	C6ZR62	Salmonella_phage	2.0e-113	99.0
SQH90199.1\|3520821_3521004_-	protein Niprotein NZ	C6ZR61	Salmonella_phage	9.4e-24	96.7
SQH90200.1\|3520991_3521462_-	Uncharacterised protein	C6ZR60	Salmonella_phage	8.2e-88	95.5
SQH90201.1\|3521442_3521679_-	Uncharacterised protein	C6ZR59	Salmonella_phage	4.5e-34	88.5
SQH90202.1\|3522011_3522230_-	Uncharacterised protein	NA	NA	NA	NA
SQH90203.1\|3522226_3522775_-	DNA adenine methylase	E5AGF8	Erwinia_phage	1.6e-66	63.7
SQH90204.1\|3522771_3523212_-	ninB protein	K7P6U0	Enterobacteria_phage	1.0e-79	97.9
SQH90205.1\|3523289_3525170_-	gp61	Q5G8S8	Enterobacteria_phage	0.0e+00	97.9
SQH90206.1\|3525166_3525274_-	Uncharacterised protein	Q5G8S9	Enterobacteria_phage	2.4e-11	94.1
SQH90207.1\|3525277_3525955_-	DNA-binding protein	A0A0P0ZC04	Stx2-converting_phage	2.6e-58	58.1
SQH90208.1\|3525951_3526095_-	Uncharacterised protein	A0A2D1GLU0	Escherichia_phage	1.9e-16	91.5
SQH90209.1\|3526117_3526408_-	Bacteriophage CII protein	I6RSP4	Salmonella_phage	2.4e-45	100.0
SQH90210.1\|3526538_3526748_-	CRO	I6S1U2	Salmonella_phage	2.1e-35	100.0
SQH90211.1\|3526857_3527511_+	cI repressor protein	I6R0S2	Salmonella_phage	2.3e-128	100.0
SQH90212.1\|3527535_3528408_+	P63C domain	I6NRL3	Burkholderia_virus	1.3e-22	28.8
SQH90213.1\|3528551_3528755_-	Uncharacterised protein	A0A2H5BFH9	Salmonella_phage	2.3e-26	97.0
SQH90214.1\|3529009_3529474_+	antitermination protein	C6ZR44	Salmonella_phage	1.9e-57	93.3
SQH90215.1\|3529552_3530077_+	pentapeptide repeat-containing protein	I6S1T3	Salmonella_phage	2.4e-43	85.2
SQH90216.1\|3530076_3530172_+	Uncharacterised protein	NA	NA	NA	NA
SQH90217.1\|3530299_3530464_+	cIII protein family	K7P848	Enterobacteria_phage	5.7e-12	70.0
SQH90218.1\|3530448_3530601_+	Bacteriophage lambda Kil protein	NA	NA	NA	NA
SQH90219.1\|3530597_3530705_+	Uncharacterised protein	NA	NA	NA	NA
SQH90220.1\|3530685_3530994_+	Uncharacterised protein	K7PJM4	Enterobacteria_phage	2.5e-53	99.0
SQH90221.1\|3530990_3531893_+	recombination and repair protein RecT	K7PKG9	Enterobacteria_phage	5.7e-146	87.8
SQH90222.1\|3531876_3532359_+	Siphovirus Gp157	K7P6T5	Enterobacteria_phage	5.1e-77	96.2
SQH90223.1\|3532701_3532872_+	prophage protein	A0A0N7CAQ8	Salmonella_phage	1.5e-23	96.4
SQH90224.1\|3532859_3533366_+	Eae protein	A0A0N6WGF1	Salmonella_phage	4.3e-58	69.0
SQH90225.1\|3533362_3533479_+	conserved hypothetical bacteriophage protein	A0A1U8QWK2	Salmonella_phage	4.3e-14	97.1
SQH90226.1\|3533475_3534108_+	Ead protein	A0A0N7C1Y5	Escherichia_phage	4.6e-33	55.6
SQH90227.1\|3534104_3534299_+	Uncharacterised protein	A0A075B8E3	Enterobacteria_phage	1.3e-26	96.9
SQH90228.1\|3534302_3534614_+	Gp38	Q5G8V1	Enterobacteria_phage	5.5e-32	63.5
SQH90229.1\|3534606_3535146_+	Eaa2	A0A1V0E5M5	Salmonella_phage	6.4e-36	91.5
SQH90230.1\|3535145_3535418_+	Uncharacterised protein	A0A2H4FNB3	Salmonella_phage	6.9e-39	100.0
SQH90231.1\|3535708_3536872_+\|integrase	integrase	B9UDL9	Salmonella_phage	1.6e-225	99.0
3536886:3536932	attR	NA	NA	NA	NA

DBSCAN-SWA_13

3566995 : 3627334

Bacillus_phage(33.33%)

integrase,transposase,tRNA,protease

attL 3590866:3590905|attR 3594227:3594266

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH90264.1\|3566995_3567913_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
SQH90265.1\|3567909_3568362_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
SQH90266.1\|3568362_3568779_-	copper efflux regulator	NA	NA	NA	NA
SQH90267.1\|3568888_3571390_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	6.7e-112	37.2
SQH90268.1\|3571542_3572379_+	Secreted protein	NA	NA	NA	NA
SQH90269.1\|3573451_3573931_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
SQH90270.1\|3574047_3575700_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
SQH90271.1\|3575872_3577093_+	fosmidomycin resistance protein	NA	NA	NA	NA
SQH90272.1\|3577104_3577230_-	Uncharacterised protein	NA	NA	NA	NA
SQH90273.1\|3577307_3578984_+	transport protein	NA	NA	NA	NA
SQH90274.1\|3579032_3580337_-	inosine/guanosine kinase	NA	NA	NA	NA
SQH90275.1\|3580489_3581461_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	6.6e-15	27.4
SQH90276.1\|3581457_3582420_-	ferrochelatase	NA	NA	NA	NA
SQH90277.1\|3582604_3583249_-	adenylate kinase	NA	NA	NA	NA
SQH90278.1\|3583664_3585539_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.7e-115	36.9
SQH90279.1\|3585649_3586255_-	recombination protein RecR	NA	NA	NA	NA
SQH90280.1\|3586254_3586584_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQH90281.1\|3588671_3589223_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
SQH90282.1\|3589375_3589753_-	Inner membrane protein YbaN	NA	NA	NA	NA
SQH90283.1\|3589833_3590349_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
SQH90284.1\|3590362_3590530_+	Putative inner membrane protein	NA	NA	NA	NA
SQH90285.1\|3590599_3590896_+	Transposase_31	NA	NA	NA	NA
3590866:3590905	attL	NA	NA	NA	NA
SQH90286.1\|3590946_3591948_-\|integrase	site-specific integrase/recombinase	A0A142F1N9	Bacillus_phage	8.9e-15	23.3
SQH90287.1\|3591944_3592859_-	Tyrosine recombinase XerD	S5W9T9	Leptospira_phage	4.3e-08	24.9
SQH90288.1\|3592852_3594112_-\|integrase	site-specific integrase/recombinase	NA	NA	NA	NA
SQH90289.1\|3594287_3594944_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	2.6e-39	51.9
3594227:3594266	attR	NA	NA	NA	NA
SQH90290.1\|3594985_3598348_-	integral membrane protein AefA	NA	NA	NA	NA
SQH90291.1\|3598466_3599120_-	potential acrAB operon repressor	NA	NA	NA	NA
SQH90292.1\|3599261_3600455_+	acriflavin resistance protein A	NA	NA	NA	NA
SQH90293.1\|3600477_3603627_+	acriflavin resistance protein B	NA	NA	NA	NA
SQH90294.1\|3604122_3604497_+	Hha toxicity attenuator	NA	NA	NA	NA
SQH90295.1\|3604524_3604743_+	hemolysin expression modulating protein	NA	NA	NA	NA
SQH90296.1\|3604921_3605473_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQH90297.1\|3605590_3606061_+	Putative inner membrane protein	NA	NA	NA	NA
SQH90298.1\|3606116_3606257_-	LSU ribosomal protein L36p	NA	NA	NA	NA
SQH90299.1\|3606262_3606523_-	50S ribosomal protein L31	NA	NA	NA	NA
SQH90300.1\|3606747_3608298_+	Uncharacterized protein ylaB	NA	NA	NA	NA
SQH90301.1\|3608606_3608918_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
SQH90302.1\|3608950_3609520_-	lipoprotein	NA	NA	NA	NA
SQH90303.1\|3609734_3610595_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQH90304.1\|3610694_3611981_-	ammonium transporter	NA	NA	NA	NA
SQH90305.1\|3612012_3612351_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQH90306.1\|3612563_3614345_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	7.1e-39	26.9
SQH90307.1\|3614337_3616110_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
SQH90308.1\|3616150_3616609_-	transcriptional regulator	NA	NA	NA	NA
SQH90309.1\|3616721_3617777_+	lyase	NA	NA	NA	NA
SQH90310.1\|3617826_3618645_-	HMP-PP phosphatase	NA	NA	NA	NA
SQH90311.1\|3618744_3620445_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQH90312.1\|3620509_3621205_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.3e-88	68.4
SQH90313.1\|3621310_3621709_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
SQH90314.1\|3621812_3622187_-	competence protein ComEA	NA	NA	NA	NA
SQH90315.1\|3622336_3624208_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQH90316.1\|3624498_3624771_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
SQH90317.1\|3624979_3627334_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5

DBSCAN-SWA_14

3754349 : 3761809

Salmonella_phage(33.33%)

integrase

attL 3754015:3754061|attR 3757918:3757964

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3754015:3754061	attL	NA	NA	NA	NA
SQH90431.1\|3754349_3754712_+	translocase	I1TED9	Salmonella_phage	6.6e-61	98.3
SQH90432.1\|3754708_3755623_+	bactoprenol glucosyl transferase	I1TED8	Salmonella_phage	2.1e-164	93.1
SQH90433.1\|3755626_3757093_+	putative membrane protein	NA	NA	NA	NA
SQH90434.1\|3757425_3757905_+\|integrase	Phage integrase	Q76H30	Enterobacteria_phage	6.6e-85	94.3
SQH90435.1\|3758109_3759360_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	8.0e-98	48.0
3757918:3757964	attR	NA	NA	NA	NA
SQH90436.1\|3759371_3760475_-	Glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
SQH90437.1\|3760756_3761809_+	outer membrane phosphoporin protein E	Q1MVN1	Enterobacteria_phage	2.6e-113	58.8

DBSCAN-SWA_15

4210237 : 4272573

Streptococcus_phage(33.33%)

integrase,protease,tRNA

attL 4267815:4267832|attR 4274121:4274138

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQH90838.1\|4210237_4211497_+\|integrase	site-specific integrase/recombinase	NA	NA	NA	NA
SQH90839.1\|4211490_4212405_+	Tyrosine recombinase XerD	S5W9T9	Leptospira_phage	4.3e-08	24.9
SQH90840.1\|4212401_4213403_+\|integrase	site-specific integrase/recombinase	A0A142F1N9	Bacillus_phage	8.9e-15	23.3
SQH90841.1\|4213453_4213753_-	Transposase	NA	NA	NA	NA
SQH90842.1\|4214231_4215473_+	sugar transport protein	NA	NA	NA	NA
SQH90843.1\|4215559_4216831_+	Putative inner membrane protein	NA	NA	NA	NA
SQH90844.1\|4217039_4218224_+	transporter, major facilitator family	NA	NA	NA	NA
SQH90845.1\|4219094_4219766_+	transporter gate domain-containing protein	NA	NA	NA	NA
SQH90846.1\|4219762_4220224_+	membrane protein	NA	NA	NA	NA
SQH90847.1\|4220236_4221409_+	isoaspartyl dipeptidase	NA	NA	NA	NA
SQH90848.1\|4221527_4222436_+	transcriptional activator	NA	NA	NA	NA
SQH90849.1\|4222441_4223176_-	aspartate racemase	NA	NA	NA	NA
SQH90850.1\|4223414_4223861_-	Hemolysin-coregulated protein (uncharacterized)	NA	NA	NA	NA
SQH90851.1\|4224662_4225676_+\|tRNA	tryptophanyl-tRNA synthetase	NA	NA	NA	NA
SQH90852.1\|4225676_4226402_-	uxu operon transcriptional regulator	NA	NA	NA	NA
SQH90853.1\|4226946_4227474_+	dienelactone hydrolase	NA	NA	NA	NA
SQH90854.1\|4227470_4227839_-	domain of uncharacterised function superfamily	NA	NA	NA	NA
SQH90855.1\|4228136_4229048_-	putative cytoplasmic protein	NA	NA	NA	NA
SQH90856.1\|4229399_4230008_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQH90857.1\|4230061_4230253_+	Uncharacterised protein	NA	NA	NA	NA
SQH90858.1\|4230495_4230753_+	protein YjhX 2	NA	NA	NA	NA
SQH90859.1\|4230763_4232389_+	SAM-dependent methyltransferase	NA	NA	NA	NA
SQH90860.1\|4232947_4233664_+	Probable transcriptional regulatory protein YeeN	NA	NA	NA	NA
SQH90861.1\|4233605_4233713_+	Uncharacterised protein	NA	NA	NA	NA
SQH90862.1\|4233865_4234015_+	Uncharacterised protein	NA	NA	NA	NA
SQH90863.1\|4234153_4234297_+	molybdopterin-guanine dinucleotide biosynthesis protein MobA	NA	NA	NA	NA
SQH90864.1\|4234483_4235092_+	membrane protein	NA	NA	NA	NA
SQH90865.1\|4235088_4235691_+	putative cytoplasmic protein	NA	NA	NA	NA
SQH90866.1\|4235702_4239344_+	DNA repair ATPase	NA	NA	NA	NA
SQH90867.1\|4239389_4243061_+	restriction enzyme, methylase subunit	NA	NA	NA	NA
SQH90868.1\|4243060_4244149_+	spermidine/putrescine ABC transporter ATPase	K7PHD1	Enterobacteria_phage	9.1e-05	25.0
SQH90869.1\|4244135_4244948_+	putative cytoplasmic protein	NA	NA	NA	NA
SQH90870.1\|4244944_4247548_+	alkaline phosphatase	NA	NA	NA	NA
SQH90871.1\|4247558_4249643_+\|protease	ATP-dependent Lon protease	NA	NA	NA	NA
SQH90872.1\|4249681_4250773_+	Uncharacterised protein	NA	NA	NA	NA
SQH90873.1\|4251173_4252181_-	restriction endonuclease	NA	NA	NA	NA
SQH90874.1\|4252259_4255775_-	superfamily I DNA helicase	NA	NA	NA	NA
SQH90875.1\|4255953_4256421_-\|integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	3.4e-17	39.5
SQH90876.1\|4256855_4257164_-	cytotoxic protein CcdB	NA	NA	NA	NA
SQH90877.1\|4257166_4257406_-	antitoxin protein LetA	NA	NA	NA	NA
SQH90878.1\|4258513_4259389_+	Uncharacterised protein	NA	NA	NA	NA
SQH90879.1\|4259464_4260736_-	DNA cytosine methylase	Q6DMX0	Streptococcus_phage	4.8e-106	53.0
SQH90880.1\|4260862_4262266_+	5-methylcytosine-specific restriction enzyme B	M1NSM1	Streptococcus_phage	1.2e-49	34.7
SQH90881.1\|4262291_4263566_+	LlaJI restriction endonuclease	NA	NA	NA	NA
SQH90882.1\|4263761_4264343_+	Uncharacterised protein	NA	NA	NA	NA
SQH90883.1\|4264326_4264545_-	Uncharacterised protein	NA	NA	NA	NA
SQH90884.1\|4264833_4265211_+	Uncharacterised protein	NA	NA	NA	NA
SQH90885.1\|4265216_4266485_+	relaxase	NA	NA	NA	NA
SQH90886.1\|4266790_4267456_+	Uncharacterised protein	NA	NA	NA	NA
SQH90887.1\|4267514_4267928_-	membrane protein	NA	NA	NA	NA
4267815:4267832	attL	NA	NA	NA	NA
SQH90888.1\|4268025_4268424_-	Uncharacterised protein	NA	NA	NA	NA
SQH90889.1\|4268424_4270056_-	DNA-binding protein	NA	NA	NA	NA
SQH90890.1\|4270055_4271366_-\|integrase	integrase	NA	NA	NA	NA
SQH90891.1\|4271367_4272573_-\|integrase	integrase	NA	NA	NA	NA
4274121:4274138	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483454

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection