CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483465	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10080 genome assembly, chromosome: 1	2 crisprs	PD-DExK,cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	27	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483465_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483465_1

1050261-1052060

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

29 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of LS483465_1

>merge|LS483465|1|1050261-1052060|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTCAGCACCGGACGGGCCAGCATACGACTCACGTGTTCCCCGCGCCAGCGGGGATAAACCGACCAGCAGACCAACCATTAACCCTGTAAAGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATCCCCTAAAGGCATAGCCATCGCCGATCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTAGCCTTCGCTGCAGCGAATCCGACTCACGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCATTGACCCATTCGACCCTCCGGAAAACGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAATTCCGGGCTGGCGTCGCTGGACACGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGGCTGCGCGATTGCCCTGGGTGAATTCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATCGACCTTAAAAGCATATTCAGGCTTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCGCGGAAAATTTCGCATTGACGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGATTTGCGTGGCACGCTGCGCACATTAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGATAAATAAGGTGATAGAAAAAACAAAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAGACAGTAAACCTCACGGCCTGACCGGGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTAAATCACCACTGTATTTGCTAGCCATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAAGTAACTCCGGCCCCGAATATACGGGGGTGTTCCCCGCGCCAGCGGGGATAAACCATCACGATATGAATATGGGGCTTACGTGCAACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCTGCGAGGCCGTGACCATGTTTTCAGTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGTTGCAAAAGGAGCTGGCCGGTACTGATGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCTGACAAAATCTGCCGTCGTCTTTCTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCTGTATTAACCCACCGGTACTACAACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATTTGCTCGCCGTTCCGGCCGAGTTCTGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGACAGGTTTTAGTATTTAGTGACCGGGTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGCGAATTATCAGTAGTTTCATTGGTGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCTGGACGTAACCGAAACGGGATTAAAGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGGATCTGCATGGACTCCCGCACGTTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGTCAAACGTGGGAGCAAGTTGCCCGGAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTTCGATGCGTTCACGCTCCAGACGTTCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGCGCGCACGGAGGCTGTGCCGCTACGTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTTTCTGAACTACTCATCTGCCATTCGTGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGGGAGCGTGATTACCTGCCCAGCGGGAAAGTGTTCCCCGCGTCAGCGGGGATAGCCGT

>LS483465|1|1|1050261-1051999|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCAGCACCGGACGGGCCAGCATACGACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAGCAGACCAACCATTAACCCTGTAAAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCCCCTAAAGGCATAGCCATCGCCGATCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTAGCCTTCGCTGCAGCGAATCCGACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCATTGACCCATTCGACCCTCCGGAAAACGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAATTCCGGGCTGGCGTCGCTGGACACGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGGCTGCGCGATTGCCCTGGGTGAATTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGACCTTAAAAGCATATTCAGGCTTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTTGCGTGGCACGCTGCGCACATTAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGATAAATAAGGTGATAGAAAAAACAAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGACAGTAAACCTCACGGCCTGACCGGGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTAAATCACCACTGTATTTGCTAGCCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAGTAACTCCGGCCCCGAATATACGGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TCACGATATGAATATGGGGCTTACGTGCAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGCGAGGCCGTGACCATGTTTTCAGTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGTTGCAAAAGGAGCTGGCCGGTACTGATGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCTGTATTAACCCACCGGTACTACAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACAGGTTTTAGTATTTAGTGACCGGGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGCGAATTATCAGTAGTTTCATTGGTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTGGACGTAACCGAAACGGGATTAAAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGGGATCTGCATGGACTCCCGCACGTTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTCAAACGTGGGAGCAAGTTGCCCGGAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTTCGATGCGTTCACGCTCCAGACGTTCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTTTCTGAACTACTCATCTGCCATTCGTGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>LS483465|1|1|1050261-1052060|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCAGCACCGGACGGGCCAGCATACGACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAGCAGACCAACCATTAACCCTGTAAAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCCCCTAAAGGCATAGCCATCGCCGATCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTAGCCTTCGCTGCAGCGAATCCGACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCATTGACCCATTCGACCCTCCGGAAAACGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAATTCCGGGCTGGCGTCGCTGGACACGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGGCTGCGCGATTGCCCTGGGTGAATTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGACCTTAAAAGCATATTCAGGCTTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTTGCGTGGCACGCTGCGCACATTAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGATAAATAAGGTGATAGAAAAAACAAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGACAGTAAACCTCACGGCCTGACCGGGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTAAATCACCACTGTATTTGCTAGCCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAGTAACTCCGGCCCCGAATATACGGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TCACGATATGAATATGGGGCTTACGTGCAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGCGAGGCCGTGACCATGTTTTCAGTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGTTGCAAAAGGAGCTGGCCGGTACTGATGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCTGTATTAACCCACCGGTACTACAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACAGGTTTTAGTATTTAGTGACCGGGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGCGAATTATCAGTAGTTTCATTGGTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTGGACGTAACCGAAACGGGATTAAAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGGGATCTGCATGGACTCCCGCACGTTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTCAAACGTGGGAGCAAGTTGCCCGGAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTTCGATGCGTTCACGCTCCAGACGTTCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTTTCTGAACTACTCATCTGCCATTCGTGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA
GTGTTCCCCGCGTCAGCGGGGATAGCCGT

>LS483465|1|1|1050261-1052060|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCAGCACCGGACGGGCCAGCATACGACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAGCAGACCAACCATTAACCCTGTAAAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCCCCTAAAGGCATAGCCATCGCCGATCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTAGCCTTCGCTGCAGCGAATCCGACTCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCATTGACCCATTCGACCCTCCGGAAAACGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAATTCCGGGCTGGCGTCGCTGGACACGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGGCTGCGCGATTGCCCTGGGTGAATTCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGACCTTAAAAGCATATTCAGGCTTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCGCGGAAAATTTCGCATTGACGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTTGCGTGGCACGCTGCGCACATTAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGATAAATAAGGTGATAGAAAAAACAAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGACAGTAAACCTCACGGCCTGACCGGGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTAAATCACCACTGTATTTGCTAGCCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAGTAACTCCGGCCCCGAATATACGGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TCACGATATGAATATGGGGCTTACGTGCAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCTGCGAGGCCGTGACCATGTTTTCAGTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGTTGCAAAAGGAGCTGGCCGGTACTGATGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCTGTATTAACCCACCGGTACTACAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACAGGTTTTAGTATTTAGTGACCGGGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGCGAATTATCAGTAGTTTCATTGGTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTGGACGTAACCGAAACGGGATTAAAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGGGATCTGCATGGACTCCCGCACGTTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGTCAAACGTGGGAGCAAGTTGCCCGGAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTTCGATGCGTTCACGCTCCAGACGTTCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTTTCTGAACTACTCATCTGCCATTCGTGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA
GTGTTCCCCGCGTCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483465.1\|SQI14905.1\|1049292_1049964_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483465.1\|SQI14913.1\|1057417_1058152_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483465.1\|SQI14902.1\|1045110_1045911_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483465.1\|SQI14915.1\|1059092_1059317_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483465.1\|SQI14910.1\|1053044_1053407_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483465.1\|SQI14912.1\|1055629_1057342_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483465.1\|SQI14909.1\|1052157_1052955_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483465.1\|SQI14916.1\|1059761_1062425_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483465.1\|SQI14897.1\|1039345_1039831_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185179
LS483465.1\|SQI14900.1\|1041142_1043467_-\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
LS483465.1\|SQI14903.1\|1046138_1047776_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483465.1\|SQI14917.1\|1062436_1063996_+\|crispr-associated-protein,-Cse1-family	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483465.1\|SQI14904.1\|1047858_1049157_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483465.1\|SQI14901.1\|1043917_1044505_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185169
LS483465.1\|SQI14898.1\|1039830_1040331_-\|Protein-sfmH-Flags:-Precursor	unknown	unknown	gnl\|CDD\|185178
LS483465.1\|SQI14911.1\|1053830_1055630_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483465.1\|SQI14918.1\|1063992_1064541_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LS483465.1\|SQI14914.1\|1058364_1059108_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483465.1\|SQI14906.1\|1049994_1050141_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483465.1\|SQI14899.1\|1040356_1041130_-\|chaperone-protein-PapD	unknown	unknown	gnl\|CDD\|185177

Protein	Function_ID	Function_description	E-value
LS483465.1\|SQI14905.1\|1049292_1049964_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
LS483465.1\|SQI14913.1\|1057417_1058152_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.14735e-139
LS483465.1\|SQI14902.1\|1045110_1045911_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
LS483465.1\|SQI14915.1\|1059092_1059317_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	4.00954e-19
LS483465.1\|SQI14910.1\|1053044_1053407_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LS483465.1\|SQI14909.1\|1052157_1052955_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.22001e-102
LS483465.1\|SQI14916.1\|1059761_1062425_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483465.1\|SQI14897.1\|1039345_1039831_-\|fimbrial-subunit	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.92081e-101
LS483465.1\|SQI14900.1\|1041142_1043467_-\|outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
LS483465.1\|SQI14903.1\|1046138_1047776_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483465.1\|SQI14917.1\|1062436_1063996_+\|crispr-associated-protein,-Cse1-family	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.7397e-172
LS483465.1\|SQI14904.1\|1047858_1049157_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483465.1\|SQI14901.1\|1043917_1044505_-\|fimbrial-subunit	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
LS483465.1\|SQI14898.1\|1039830_1040331_-\|Protein-sfmH-Flags:-Precursor	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	5.2936e-105
LS483465.1\|SQI14911.1\|1053830_1055630_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483465.1\|SQI14918.1\|1063992_1064541_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.59563e-33
LS483465.1\|SQI14914.1\|1058364_1059108_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	5.35484e-178
LS483465.1\|SQI14912.1\|1055629_1057342_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483465.1\|SQI14899.1\|1040356_1041130_-\|chaperone-protein-PapD	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	3.82897e-180

>LS483465.1|SQI14906.1|1049994_1050141_+|Uncharacterised-protein
MPSVTHPLPCIVYFLYVNFDECIKALINFSIAMHGSRYFGKFKEKIIL
>LS483465.1|SQI14905.1|1049292_1049964_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483465.1|SQI14904.1|1047858_1049157_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483465.1|SQI14903.1|1046138_1047776_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LS483465.1|SQI14902.1|1045110_1045911_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483465.1|SQI14901.1|1043917_1044505_-|fimbrial-subunit
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>LS483465.1|SQI14900.1|1041142_1043467_-|outer-membrane-usher-protein
MSGARFTEGHGFSGRPGTLHAAGEFTPGVYGIQRCRLGPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNVFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDRE
>LS483465.1|SQI14899.1|1040356_1041130_-|chaperone-protein-PapD
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTLPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>LS483465.1|SQI14898.1|1039830_1040331_-|Protein-sfmH-Flags:-Precursor
MLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDVSQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>LS483465.1|SQI14897.1|1039345_1039831_-|fimbrial-subunit
MERFIVKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>LS483465.1|SQI14909.1|1052157_1052955_+|beta-lactamase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKQIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483465.1|SQI14910.1|1053044_1053407_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LS483465.1|SQI14911.1|1053830_1055630_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMSGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARMVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVESYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LS483465.1|SQI14912.1|1055629_1057342_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYFRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483465.1|SQI14913.1|1057417_1058152_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAEANAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483465.1|SQI14914.1|1058364_1059108_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDECSRNILLV
>LS483465.1|SQI14915.1|1059092_1059317_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGAGIKSRIILERKKRTMRWKCYTPSFTDRAVVNLERWKLT
>LS483465.1|SQI14916.1|1059761_1062425_+|helicase
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDIYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LS483465.1|SQI14917.1|1062436_1063996_+|crispr-associated-protein,-Cse1-family
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>LS483465.1|SQI14918.1|1063992_1064541_+|transposase
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKAAWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYFQAGDNEQD

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Crispr_ID: LS483465_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483465_2

1068309-1069619

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

21 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LS483465_2

>merge|LS483465|2|1068309-1069619|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACTGTCTATGTATTCATCAAAAAGTTCTTTTATCGTGTGTTCCCCGCGCCAGCGGGGATAAACTGACGTTGGTGATACGGAATAGTGGCAATAAAATCGTGTTCCCCGCGCCAGCGGGGATAAACTGACCAATAACAAACTAACAGGTGTAGAGCACAAGTGTTCCCCGCGCCAGCGGGGATAAACTGATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACCAATAACAAACTAACAGACGATCGCATCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGATTAAAACGGGCTAACTATTTGTGAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCTTTTCAGTGACAAAAATGCCTGGAAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCACTGACGGCGGGTTAGCTCGCCACTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTGATTACGGCAAGGTGCATACGTCCTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTGCTCGAAATTGTCGCCTATTGGGAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGTCGCCGAAATTATTCAGCCTGGACATGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGACGAATCAGACCGACTCGCACGTTTACCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAACGCGCTACCTACAATATTTCCACGGTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTTTTGATGAGCAATCTTGACAAAATTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGATGATTACTATCGCCTGAAGGTGAACGAGTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATCAGTGATAAATGCTGCAATCGCAGTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCATTCGAGAGCAAAACCGCTGACTAAACTTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTAACAGTAAACCCGGGGTCTTCTATTCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATACATCTGATAATCCCAGGGATTTCGCTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACTAATACACTGACAATTGACGCAATCCGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGACTAATACACTGACAATTGACGCAATCCGCGCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>LS483465|2|2|1068309-1069619|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACTG	TCTATGTATTCATCAAAAAGTTCTTTTATCGT
GTGTTCCCCGCGCCAGCGGGGATAAACTG	ACGTTGGTGATACGGAATAGTGGCAATAAAATC
GTGTTCCCCGCGCCAGCGGGGATAAACTG	ACCAATAACAAACTAACAGGTGTAGAGCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACTG	ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAATAACAAACTAACAGACGATCGCATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGATTAAAACGGGCTAACTATTTGTGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTTTTCAGTGACAAAAATGCCTGGAAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACTGACGGCGGGTTAGCTCGCCACTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGATTACGGCAAGGTGCATACGTCCTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTGCTCGAAATTGTCGCCTATTGGGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTCGCCGAAATTATTCAGCCTGGACATGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGAATCAGACCGACTCGCACGTTTACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAACGCGCTACCTACAATATTTCCACGGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTTGATGAGCAATCTTGACAAAATTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGATTACTATCGCCTGAAGGTGAACGAGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATCAGTGATAAATGCTGCAATCGCAGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTCGAGAGCAAAACCGCTGACTAAACTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTAACAGTAAACCCGGGGTCTTCTATTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATACATCTGATAATCCCAGGGATTTCGCTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTAATACACTGACAATTGACGCAATCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTAATACACTGACAATTGACGCAATCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>LS483465|2|2|1068309-1069619|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACTG	TCTATGTATTCATCAAAAAGTTCTTTTATCGT
GTGTTCCCCGCGCCAGCGGGGATAAACTG	ACGTTGGTGATACGGAATAGTGGCAATAAAATC
GTGTTCCCCGCGCCAGCGGGGATAAACTG	ACCAATAACAAACTAACAGGTGTAGAGCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACTG	ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAATAACAAACTAACAGACGATCGCATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGATTAAAACGGGCTAACTATTTGTGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTTTTCAGTGACAAAAATGCCTGGAAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACTGACGGCGGGTTAGCTCGCCACTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGATTACGGCAAGGTGCATACGTCCTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTGCTCGAAATTGTCGCCTATTGGGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTCGCCGAAATTATTCAGCCTGGACATGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGAATCAGACCGACTCGCACGTTTACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAACGCGCTACCTACAATATTTCCACGGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTTGATGAGCAATCTTGACAAAATTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGATTACTATCGCCTGAAGGTGAACGAGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATCAGTGATAAATGCTGCAATCGCAGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTCGAGAGCAAAACCGCTGACTAAACTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTAACAGTAAACCCGGGGTCTTCTATTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATACATCTGATAATCCCAGGGATTTCGCTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTAATACACTGACAATTGACGCAATCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTAATACACTGACAATTGACGCAATCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>LS483465|2|2|1068309-1069619|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACTG	TCTATGTATTCATCAAAAAGTTCTTTTATCGT
GTGTTCCCCGCGCCAGCGGGGATAAACTG	ACGTTGGTGATACGGAATAGTGGCAATAAAATC
GTGTTCCCCGCGCCAGCGGGGATAAACTG	ACCAATAACAAACTAACAGGTGTAGAGCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACTG	ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAATAACAAACTAACAGACGATCGCATCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGATTAAAACGGGCTAACTATTTGTGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCTTTTCAGTGACAAAAATGCCTGGAAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACTGACGGCGGGTTAGCTCGCCACTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGATTACGGCAAGGTGCATACGTCCTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTGCTCGAAATTGTCGCCTATTGGGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTCGCCGAAATTATTCAGCCTGGACATGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGAATCAGACCGACTCGCACGTTTACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAACGCGCTACCTACAATATTTCCACGGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTTGATGAGCAATCTTGACAAAATTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGATTACTATCGCCTGAAGGTGAACGAGTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATCAGTGATAAATGCTGCAATCGCAGTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTCGAGAGCAAAACCGCTGACTAAACTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTAACAGTAAACCCGGGGTCTTCTATTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATACATCTGATAATCCCAGGGATTTCGCTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTAATACACTGACAATTGACGCAATCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTAATACACTGACAATTGACGCAATCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483465.1\|SQI14927.1\|1073275_1073881_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LS483465.1\|SQI14914.1\|1058364_1059108_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483465.1\|SQI14924.1\|1069633_1070680_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483465.1\|SQI14915.1\|1059092_1059317_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483465.1\|SQI14932.1\|1075961_1077011_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LS483465.1\|SQI14920.1\|1065623_1066370_+\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LS483465.1\|SQI14916.1\|1059761_1062425_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483465.1\|SQI14931.1\|1075485_1075965_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LS483465.1\|SQI14917.1\|1062436_1063996_+\|crispr-associated-protein,-Cse1-family	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483465.1\|SQI14933.1\|1076991_1077753_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LS483465.1\|SQI14919.1\|1064554_1065613_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LS483465.1\|SQI14922.1\|1066998_1067919_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LS483465.1\|SQI14930.1\|1074775_1075486_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LS483465.1\|SQI14918.1\|1063992_1064541_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LS483465.1\|SQI14926.1\|1071849_1073289_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483465.1\|SQI14923.1\|1067918_1068212_+\|ssRNA-endonuclease	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
LS483465.1\|SQI14928.1\|1073931_1074255_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LS483465.1\|SQI14921.1\|1066351_1067002_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LS483465.1\|SQI14929.1\|1074445_1074757_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LS483465.1\|SQI14925.1\|1070931_1071840_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
LS483465.1\|SQI14927.1\|1073275_1073881_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LS483465.1\|SQI14914.1\|1058364_1059108_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	5.35484e-178
LS483465.1\|SQI14924.1\|1069633_1070680_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483465.1\|SQI14915.1\|1059092_1059317_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	4.00954e-19
LS483465.1\|SQI14932.1\|1075961_1077011_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LS483465.1\|SQI14920.1\|1065623_1066370_+\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.89814e-47
LS483465.1\|SQI14916.1\|1059761_1062425_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483465.1\|SQI14931.1\|1075485_1075965_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
LS483465.1\|SQI14917.1\|1062436_1063996_+\|crispr-associated-protein,-Cse1-family	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.7397e-172
LS483465.1\|SQI14933.1\|1076991_1077753_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
LS483465.1\|SQI14919.1\|1064554_1065613_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.89551e-135
LS483465.1\|SQI14922.1\|1066998_1067919_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
LS483465.1\|SQI14930.1\|1074775_1075486_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.50232e-119
LS483465.1\|SQI14918.1\|1063992_1064541_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.59563e-33
LS483465.1\|SQI14926.1\|1071849_1073289_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483465.1\|SQI14923.1\|1067918_1068212_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.70948e-65
LS483465.1\|SQI14928.1\|1073931_1074255_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
LS483465.1\|SQI14921.1\|1066351_1067002_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	2.78444e-76
LS483465.1\|SQI14929.1\|1074445_1074757_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LS483465.1\|SQI14925.1\|1070931_1071840_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0

>LS483465.1|SQI14923.1|1067918_1068212_+|ssRNA-endonuclease
MSMVVVVTENVPPRLRGRLAVWLLEIRAGVYVGDTSKRIREMIWQQITQLGGCGNAVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>LS483465.1|SQI14922.1|1066998_1067919_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>LS483465.1|SQI14921.1|1066351_1067002_+|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLVRQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINDPALFLQRLSQGYGKSRAFGCGMMMIKPGDDA
>LS483465.1|SQI14920.1|1065623_1066370_+|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAASLGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGRAPDALREAYRQYQDKFNALRLPLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLSKEDACISQE
>LS483465.1|SQI14919.1|1064554_1065613_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILVESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>LS483465.1|SQI14918.1|1063992_1064541_+|transposase
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKAAWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYFQAGDNEQD
>LS483465.1|SQI14917.1|1062436_1063996_+|crispr-associated-protein,-Cse1-family
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>LS483465.1|SQI14916.1|1059761_1062425_+|helicase
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDIYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKDEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LS483465.1|SQI14915.1|1059092_1059317_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGAGIKSRIILERKKRTMRWKCYTPSFTDRAVVNLERWKLT
>LS483465.1|SQI14914.1|1058364_1059108_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDECSRNILLV
>LS483465.1|SQI14924.1|1069633_1070680_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483465.1|SQI14925.1|1070931_1071840_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483465.1|SQI14926.1|1071849_1073289_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLTPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELNERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LS483465.1|SQI14927.1|1073275_1073881_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LS483465.1|SQI14928.1|1073931_1074255_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LS483465.1|SQI14929.1|1074445_1074757_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LS483465.1|SQI14930.1|1074775_1075486_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKTAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LS483465.1|SQI14931.1|1075485_1075965_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LS483465.1|SQI14932.1|1075961_1077011_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LS483465.1|SQI14933.1|1076991_1077753_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483465_2	2.9\|1068827\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068827-1068858	32	MK422450	Klebsiella phage ST13-OXA48phi12.4, complete genome	36616-36647	2	0.938
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MG812490	Mycobacterium phage Holeinone, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MH051249	Mycobacterium phage Boyle, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MN428049	Mycobacterium phage West99, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MN586045	Mycobacterium phage Brownie5, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MH001452	Mycobacterium phage Kheth, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MH697584	Mycobacterium phage FrenchFry, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MG757162	Mycobacterium phage Opia, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MK814751	Mycobacterium phage Bananafish, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	KT365402	Mycobacterium phage Tres, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	KM101117	Mycobacterium phage LizLemon, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	JN698991	Mycobacterium phage Hedgerow, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	NC_043767	Mycobacterium virus TA17a, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MN586046	Mycobacterium phage Tinciduntsolum, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MK620898	Mycobacterium phage Coffee, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	JN699004	Mycobacterium phage Ares, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MG812491	Mycobacterium phage ItsyBitsy1, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MN234225	Mycobacterium phage Rhinoforte, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	DQ398048	Mycobacterium phage Qyrzula, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	AY129334	Mycobacterium phage Rosebush, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MH590591	Mycobacterium phage Sabella, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	JN618996	Mycobacterium phage Arbiter, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	KX443696	Mycobacterium phage Laurie, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MH727546	Mycobacterium phage Eaglehorse, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MK061411	Mycobacterium phage Faze9, complete genome	129-160	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	KT880194	Mycobacterium phage Glass, complete genome	129-160	5	0.844
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	24647-24678	5	0.844
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	CP051275	Salmonella phage SW-37, complete genome	23972-24003	5	0.844
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MN813678	Mycobacterium phage Lephleur, complete genome	129-160	6	0.812
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	MT639652	Mycobacterium phage MasterPo, complete genome	129-160	6	0.812
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	KR997932	Mycobacterium phage Godines, complete genome	129-160	6	0.812
LS483465_1	1.27\|1051878\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051878-1051909	32	MF150911	Ralstonia phage DU_RP_II, complete genome	23701-23732	6	0.812
LS483465_1	1.27\|1051878\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051878-1051909	32	MN996301	Ralstonia phage RpY1, complete genome	40170-40201	6	0.812
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	NC_022754	Salmonella phage SETP7, complete genome	33704-33735	6	0.812
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	CP053324	Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence	37078-37109	6	0.812
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	MT074484	Salmonella phage celemicas, complete genome	40185-40216	6	0.812
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	MG969408	UNVERIFIED: Salmonella phage GE_vB_HIL, complete genome	39678-39709	6	0.812
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	MG969409	UNVERIFIED: Salmonella phage GE_vB_M4, complete genome	11222-11253	6	0.812
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	AF349435	Bacteriophage MB78 22 kDa protein gene, complete cds; and unknown gene	1507-1538	6	0.812
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	MG969410	UNVERIFIED: Salmonella phage GE_vB_M5, complete genome	7449-7480	6	0.812
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	NZ_AP014802	Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351	69804-69835	7	0.781
LS483465_1	1.11\|1050900\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050900-1050931	32	NZ_CP035407	Bacillus subtilis strain SRCM103612 plasmid unnamed1	19038-19069	7	0.781
LS483465_1	1.11\|1050900\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050900-1050931	32	NC_001884	Bacillus phage SPBc2, complete genome	894-925	7	0.781
LS483465_1	1.11\|1050900\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050900-1050931	32	AF020713	Bacteriophage SPBc2 complete genome	894-925	7	0.781
LS483465_1	1.15\|1051144\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051144-1051175	32	NZ_CP021139	Sulfuriferula sp. AH1 plasmid unnamed, complete sequence	32668-32699	7	0.781
LS483465_1	1.15\|1051144\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051144-1051175	32	LC155906	Achromobacter xylosoxidans plasmid pKUN4507_1 DNA, complete sequence, strain: KUN4507	4936-4967	7	0.781
LS483465_1	1.15\|1051144\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051144-1051175	32	NC_007206	Haemophilus influenzae biotype aegyptius plasmid pF1947, complete sequence	28452-28483	7	0.781
LS483465_1	1.15\|1051144\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051144-1051175	32	NC_004846	Haemophilus influenzae biotype aegyptius plasmid pF3031, complete sequence	28175-28206	7	0.781
LS483465_1	1.15\|1051144\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051144-1051175	32	NC_004058	Haemophilus influenzae biotype aegyptius BPF plasmid pF3028, complete sequence	28121-28152	7	0.781
LS483465_1	1.16\|1051205\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051205-1051236	32	KR296691	Salmonella phage 37, complete genome	429-460	7	0.781
LS483465_1	1.16\|1051205\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051205-1051236	32	LR026998	unidentified phage genome assembly, chromosome: 1	429-460	7	0.781
LS483465_1	1.16\|1051205\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051205-1051236	32	NC_048666	Salmonella phage YSD1 strain YSD1_PHAGE genome assembly	429-460	7	0.781
LS483465_1	1.18\|1051328\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051328-1051359	32	MT701590	Klebsiella phage Miami, complete genome	35185-35216	7	0.781
LS483465_2	2.2\|1068399\|33\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068399-1068431	33	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	73049-73081	7	0.788
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	NC_006949	Enterobacteria phage ES18, complete genome	28717-28748	7	0.781
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	AY736146	Salmonella typhimurium bacteriophage ES18, complete sequence	28717-28748	7	0.781
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	NC_047875	Salmonella phage UPF_BP1, complete genome	34840-34871	7	0.781
LS483465_2	2.17\|1069315\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069315-1069346	32	KM659092	Ochrobactrum sp. LM19 plasmid pLM19O2, complete sequence	78263-78294	7	0.781
LS483465_1	1.5\|1050534\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050534-1050565	32	NC_011879	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence	149001-149032	8	0.75
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	NZ_CP045549	Streptomyces sp. SYP-A7193 plasmid unnamed2, complete sequence	57507-57538	8	0.75
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	NC_002682	Mesorhizobium japonicum MAFF 303099 plasmid pMLb, complete sequence	100885-100916	8	0.75
LS483465_1	1.6\|1050595\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050595-1050626	32	NC_016655	Rhodococcus phage REQ1, complete genome	18878-18909	8	0.75
LS483465_1	1.15\|1051144\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051144-1051175	32	NZ_CP015374	Pandoraea pnomenusa strain MCB032 plasmid unnamed 3, complete sequence	13725-13756	8	0.75
LS483465_1	1.15\|1051144\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051144-1051175	32	NZ_LR594694	Variovorax sp. WDL1 plasmid 6	17864-17895	8	0.75
LS483465_1	1.15\|1051144\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051144-1051175	32	NZ_CP010894	Pseudomonas sp. MRSN12121 plasmid, complete sequence	15102-15133	8	0.75
LS483465_1	1.16\|1051205\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051205-1051236	32	KC139631	Salmonella phage FSL SP-019 primase and hypothetical protein genes, complete cds	3166-3197	8	0.75
LS483465_1	1.16\|1051205\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051205-1051236	32	KC139680	Salmonella phage FSL SP-099 tape measure protein gene, partial cds; and pre-tape measure frameshift protein G-Ts, hypothetical proteins, capsid protein E, decorator protein D, prohead protease ClpP, portal protein, head-tail joining protein lambda W, terminase large subunit, TerS, helicase, hypothetical protein, DNA polymerase I, hypothetical proteins, DR0530-like primase, and helix-turn-helix XRE-family of transcriptional regulators genes, complete cds	25218-25249	8	0.75
LS483465_1	1.20\|1051450\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051450-1051481	32	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	1189194-1189225	8	0.75
LS483465_2	2.1\|1068338\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068338-1068369	32	NZ_CP050070	Klebsiella aerogenes strain 035 plasmid p35_C, complete sequence	16772-16803	8	0.75
LS483465_2	2.1\|1068338\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068338-1068369	32	NZ_CP040996	Klebsiella pneumoniae strain FDAARGOS_775 plasmid unnamed4	24020-24051	8	0.75
LS483465_2	2.1\|1068338\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068338-1068369	32	NZ_CP026209	Escherichia coli strain ECONIH5 plasmid unnamed, complete sequence	25179-25210	8	0.75
LS483465_2	2.1\|1068338\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068338-1068369	32	NZ_CP030875	Raoultella sp. X13 plasmid unnamed, complete sequence	26515-26546	8	0.75
LS483465_2	2.1\|1068338\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068338-1068369	32	NZ_CP024432	Klebsiella pneumoniae strain DA48896 plasmid p48896_3, complete sequence	18055-18086	8	0.75
LS483465_2	2.1\|1068338\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068338-1068369	32	NZ_CP011864	Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence	27556-27587	8	0.75
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	11707-11738	8	0.75
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	37421-37452	8	0.75
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	115676-115707	8	0.75
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	NC_004813	Enterobacteria phage BP-4795, complete genome	2667-2698	8	0.75
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	AJ556162	Phage BP-4795 complete genome	2667-2698	8	0.75
LS483465_2	2.14\|1069132\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069132-1069163	32	MK448721	Streptococcus phage Javan263, complete genome	22083-22114	8	0.75
LS483465_2	2.14\|1069132\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069132-1069163	32	JX560968	Escherichia phage EC6, complete genome	39205-39236	8	0.75
LS483465_2	2.14\|1069132\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069132-1069163	32	MG065664	UNVERIFIED: Campylobacter phage A132, complete genome	26272-26303	8	0.75
LS483465_1	1.16\|1051205\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051205-1051236	32	NZ_CP020115	Nodularia spumigena UHCC 0039 plasmid pUHCC0039a, complete sequence	44767-44798	9	0.719
LS483465_1	1.16\|1051205\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051205-1051236	32	NC_021780	Salmonella phage FSL SP-088, complete genome	59028-59059	9	0.719
LS483465_1	1.16\|1051205\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051205-1051236	32	KC139515	Salmonella phage FSL SP-124, complete genome	58785-58816	9	0.719
LS483465_1	1.20\|1051450\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051450-1051481	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	213435-213466	9	0.719
LS483465_1	1.22\|1051572\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051572-1051603	32	KT264824	Gokushovirus WZ-2015a isolate 76Mky15, complete genome	935-966	9	0.719
LS483465_1	1.26\|1051816\|33\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051816-1051848	33	AB863625	Ralstonia phage RSK1 DNA, complete genome	30229-30261	9	0.727
LS483465_1	1.26\|1051816\|33\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051816-1051848	33	MT740737	Ralstonia phage Firinga, complete genome	33352-33384	9	0.727
LS483465_1	1.26\|1051816\|33\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051816-1051848	33	MT740741	Ralstonia phage Hennie, complete genome	26821-26853	9	0.727
LS483465_1	1.27\|1051878\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051878-1051909	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	715052-715083	9	0.719
LS483465_1	1.29\|1052000\|32\|LS483465\|CRISPRCasFinder,CRT	1052000-1052031	32	MN369756	Gordonia phage Anon, complete genome	19662-19693	9	0.719
LS483465_2	2.1\|1068338\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068338-1068369	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	666961-666992	9	0.719
LS483465_2	2.3\|1068461\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068461-1068492	32	NC_011314	Aliivibrio salmonicida LFI1238 plasmid pVSAL320, complete sequence	685-716	9	0.719
LS483465_2	2.3\|1068461\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068461-1068492	32	NZ_CP034239	Aliivibrio salmonicida strain VS224 plasmid pVS320-224, complete sequence	23838-23869	9	0.719
LS483465_2	2.5\|1068583\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068583-1068614	32	MK799832	Synechococcus phage S-B05, complete genome	153933-153964	9	0.719
LS483465_2	2.14\|1069132\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069132-1069163	32	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	380188-380219	9	0.719
LS483465_2	2.14\|1069132\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069132-1069163	32	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	362467-362498	9	0.719
LS483465_2	2.19\|1069437\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069437-1069468	32	MK765592	Tortoise microvirus 41 isolate 41_SP_100, complete genome	4812-4843	9	0.719
LS483465_2	2.19\|1069437\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069437-1069468	32	MK765657	Tortoise microvirus 2 isolate 2_SP_12, complete genome	4839-4870	9	0.719
LS483465_2	2.19\|1069437\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069437-1069468	32	MK765611	Tortoise microvirus 59 isolate 59_SP_97, complete genome	4812-4843	9	0.719
LS483465_2	2.19\|1069437\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069437-1069468	32	MW149100	Microvirus sp. isolate gila21, complete genome	4803-4834	9	0.719
LS483465_2	2.19\|1069437\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069437-1069468	32	MK765552	Tortoise microvirus 2 isolate 2_SP_25, complete genome	4839-4870	9	0.719
LS483465_1	1.4\|1050473\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050473-1050504	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	166933-166964	10	0.688
LS483465_1	1.4\|1050473\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050473-1050504	32	NZ_LT969519	Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1	89170-89201	10	0.688
LS483465_1	1.4\|1050473\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050473-1050504	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	63705-63736	10	0.688
LS483465_1	1.4\|1050473\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050473-1050504	32	NZ_CP029094	Pseudomonas aeruginosa strain AR441 plasmid unnamed3, complete sequence	349899-349930	10	0.688
LS483465_1	1.4\|1050473\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050473-1050504	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	281115-281146	10	0.688
LS483465_1	1.4\|1050473\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050473-1050504	32	NZ_CP027170	Pseudomonas aeruginosa strain AR_0356 plasmid unnamed2, complete sequence	9043-9074	10	0.688
LS483465_1	1.8\|1050717\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050717-1050748	32	NC_019749	Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence	98514-98545	10	0.688
LS483465_1	1.20\|1051450\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051450-1051481	32	NZ_CP022567	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence	131465-131496	10	0.688
LS483465_2	2.1\|1068338\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1068338-1068369	32	AP013980	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S31-C4, * SEQUENCING IN PROGRESS *	36023-36054	10	0.688
LS483465_2	2.16\|1069254\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069254-1069285	32	MK531536	Acinetobacter baumannii strain MC1 plasmid pMC1.1, complete sequence	180192-180223	10	0.688
LS483465_2	2.16\|1069254\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069254-1069285	32	NZ_CP027531	Acinetobacter baumannii strain AR_0088 plasmid unnamed1, complete sequence	111758-111789	10	0.688
LS483465_2	2.16\|1069254\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069254-1069285	32	NZ_CP050386	Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence	49136-49167	10	0.688
LS483465_2	2.16\|1069254\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069254-1069285	32	LT605060	Acinetobacter calcoaceticus strain NCTC7364 genome assembly, plasmid: 2	77707-77738	10	0.688
LS483465_2	2.16\|1069254\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069254-1069285	32	NZ_CP020596	Acinetobacter baumannii strain HWBA8 plasmid pHWBA8_1, complete sequence	89803-89834	10	0.688
LS483465_2	2.16\|1069254\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069254-1069285	32	NZ_CP040260	Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence	1715-1746	10	0.688
LS483465_2	2.16\|1069254\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069254-1069285	32	NZ_CP022285	Acinetobacter baumannii strain 7804 plasmid pAba7804b, complete sequence	8427-8458	10	0.688
LS483465_2	2.16\|1069254\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069254-1069285	32	NZ_CP012005	Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence	19752-19783	10	0.688
LS483465_2	2.16\|1069254\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069254-1069285	32	CP033562	Acinetobacter nosocomialis strain 2010S01-197 plasmid p2010S01-197-1, complete sequence	95546-95577	10	0.688
LS483465_2	2.20\|1069498\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069498-1069529	32	NZ_CP045342	Vibrio sp. THAF190c plasmid pTHAF190c_d, complete sequence	39805-39836	10	0.688
LS483465_2	2.21\|1069559\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069559-1069590	32	NZ_CP045342	Vibrio sp. THAF190c plasmid pTHAF190c_d, complete sequence	39805-39836	10	0.688
LS483465_1	1.3\|1050412\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1050412-1050443	32	NC_011981	Agrobacterium vitis S4 plasmid pAtS4e, complete sequence	57926-57957	11	0.656
LS483465_1	1.24\|1051694\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1051694-1051725	32	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	300567-300598	11	0.656
LS483465_2	2.18\|1069376\|32\|LS483465\|PILER-CR,CRISPRCasFinder,CRT	1069376-1069407	32	NZ_CP026426	Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence	74277-74308	11	0.656

1. spacer 2.9|1068827|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK422450 (Klebsiella phage ST13-OXA48phi12.4, complete genome) position: , mismatch: 2, identity: 0.938

cgtgattacggcaaggtgcatacgtccttttg	CRISPR spacer
cgtgattacggcaaggtgcatacatcattttg	Protospacer
***********************.** *****

2. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MG812490 (Mycobacterium phage Holeinone, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

3. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MH051249 (Mycobacterium phage Boyle, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

4. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MN428049 (Mycobacterium phage West99, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

5. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MN586045 (Mycobacterium phage Brownie5, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

6. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MH001452 (Mycobacterium phage Kheth, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

7. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MH697584 (Mycobacterium phage FrenchFry, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

8. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MG757162 (Mycobacterium phage Opia, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

9. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK814751 (Mycobacterium phage Bananafish, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

10. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KT365402 (Mycobacterium phage Tres, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

11. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KM101117 (Mycobacterium phage LizLemon, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

12. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to JN698991 (Mycobacterium phage Hedgerow, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

13. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_043767 (Mycobacterium virus TA17a, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

14. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MN586046 (Mycobacterium phage Tinciduntsolum, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

15. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK620898 (Mycobacterium phage Coffee, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

16. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to JN699004 (Mycobacterium phage Ares, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

17. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MG812491 (Mycobacterium phage ItsyBitsy1, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

18. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MN234225 (Mycobacterium phage Rhinoforte, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

19. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to DQ398048 (Mycobacterium phage Qyrzula, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

20. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to AY129334 (Mycobacterium phage Rosebush, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

21. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MH590591 (Mycobacterium phage Sabella, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

22. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to JN618996 (Mycobacterium phage Arbiter, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

23. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KX443696 (Mycobacterium phage Laurie, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

24. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MH727546 (Mycobacterium phage Eaglehorse, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

25. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK061411 (Mycobacterium phage Faze9, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

26. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KT880194 (Mycobacterium phage Glass, complete genome) position: , mismatch: 5, identity: 0.844

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacgggt	Protospacer
**. *******************.***** *.

27. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacaaactaacagacgaacgcgtttc	Protospacer
*********************** ***.*.

28. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 5, identity: 0.844

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacaaactaacagacgaacgcgtttc	Protospacer
*********************** ***.*.

29. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MN813678 (Mycobacterium phage Lephleur, complete genome) position: , mismatch: 6, identity: 0.812

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacaggt	Protospacer
**. *******************.****. *.

30. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MT639652 (Mycobacterium phage MasterPo, complete genome) position: , mismatch: 6, identity: 0.812

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacaggt	Protospacer
**. *******************.****. *.

31. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KR997932 (Mycobacterium phage Godines, complete genome) position: , mismatch: 6, identity: 0.812

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gcgtttccgggctggcgtcgctgaacacaggt	Protospacer
**. *******************.****. *.

32. spacer 1.27|1051878|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 6, identity: 0.812

gaggcgcgcacggaggctgtgcc-gctacgtga	CRISPR spacer
taggcgcgctcgcaggctgtgccggcgacgcg-	Protospacer
 ******** ** ********** ** ***.*

33. spacer 1.27|1051878|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MN996301 (Ralstonia phage RpY1, complete genome) position: , mismatch: 6, identity: 0.812

gaggcgcgcacggaggctgtgcc-gctacgtga	CRISPR spacer
taggcgcgctcgcaggctgtgccggcgacgcg-	Protospacer
 ******** ** ********** ** ***.*

34. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_022754 (Salmonella phage SETP7, complete genome) position: , mismatch: 6, identity: 0.812

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacaaactaacagacgagcgacctga	Protospacer
*********************** **  ...*

35. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to CP053324 (Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacaaactaccagacgaacgcgtttc	Protospacer
*************** ******* ***.*.

36. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MT074484 (Salmonella phage celemicas, complete genome) position: , mismatch: 6, identity: 0.812

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacaaactaacagacgaaacgctaaa	Protospacer
***********************     * **

37. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MG969408 (UNVERIFIED: Salmonella phage GE_vB_HIL, complete genome) position: , mismatch: 6, identity: 0.812

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacaaactaacagacgaaacgctaaa	Protospacer
***********************     * **

38. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MG969409 (UNVERIFIED: Salmonella phage GE_vB_M4, complete genome) position: , mismatch: 6, identity: 0.812

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacaaactaacagacgaaacgctaaa	Protospacer
***********************     * **

39. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to AF349435 (Bacteriophage MB78 22 kDa protein gene, complete cds; and unknown gene) position: , mismatch: 6, identity: 0.812

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacaaactaacagacgaaacgctaaa	Protospacer
***********************     * **

40. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MG969410 (UNVERIFIED: Salmonella phage GE_vB_M5, complete genome) position: , mismatch: 6, identity: 0.812

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacaaactaacagacgaaacgctaaa	Protospacer
***********************     * **

41. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014802 (Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351) position: , mismatch: 7, identity: 0.781

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
gccggtccgagctgccgtcgctggacacggtc	Protospacer
** . ****.**** **************  *

42. spacer 1.11|1050900|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035407 (Bacillus subtilis strain SRCM103612 plasmid unnamed1) position: , mismatch: 7, identity: 0.781

gagataaataaggtgatagaaaaaacaaaata	CRISPR spacer
gttaaatataaggttagagaaaaaacaaaaga	Protospacer
*  * * ******* * ************* *

43. spacer 1.11|1050900|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_001884 (Bacillus phage SPBc2, complete genome) position: , mismatch: 7, identity: 0.781

gagataaataaggtgatagaaaaaacaaaata	CRISPR spacer
gttaaatataaggttagagaaaaaacaaaaga	Protospacer
*  * * ******* * ************* *

44. spacer 1.11|1050900|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to AF020713 (Bacteriophage SPBc2 complete genome) position: , mismatch: 7, identity: 0.781

gagataaataaggtgatagaaaaaacaaaata	CRISPR spacer
gttaaatataaggttagagaaaaaacaaaaga	Protospacer
*  * * ******* * ************* *

45. spacer 1.15|1051144|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021139 (Sulfuriferula sp. AH1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

tcacgatatgaatatggggcttacgtgcaacc	CRISPR spacer
tgacaatatgaatatgcggcttacgctcgatc	Protospacer
* **.*********** ********. *.*.*

46. spacer 1.15|1051144|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to LC155906 (Achromobacter xylosoxidans plasmid pKUN4507_1 DNA, complete sequence, strain: KUN4507) position: , mismatch: 7, identity: 0.781

tcacgatatgaatatggggcttacgtgcaacc	CRISPR spacer
tgacgatatgaatatgcggcttgcgctcgact	Protospacer
* ************** *****.**. *.**.

47. spacer 1.15|1051144|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_007206 (Haemophilus influenzae biotype aegyptius plasmid pF1947, complete sequence) position: , mismatch: 7, identity: 0.781

tcacgatatgaatatggggcttacgtgcaacc	CRISPR spacer
taacgatatgaatatgtggtttacgctctatc	Protospacer
* ************** **.*****. * *.*

48. spacer 1.15|1051144|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_004846 (Haemophilus influenzae biotype aegyptius plasmid pF3031, complete sequence) position: , mismatch: 7, identity: 0.781

tcacgatatgaatatggggcttacgtgcaacc	CRISPR spacer
taacgatatgaatatgcggtttacgctctatc	Protospacer
* ************** **.*****. * *.*

49. spacer 1.15|1051144|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_004058 (Haemophilus influenzae biotype aegyptius BPF plasmid pF3028, complete sequence) position: , mismatch: 7, identity: 0.781

tcacgatatgaatatggggcttacgtgcaacc	CRISPR spacer
taacgatatgaatatgcggtttacgctctatc	Protospacer
* ************** **.*****. * *.*

50. spacer 1.16|1051205|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KR296691 (Salmonella phage 37, complete genome) position: , mismatch: 7, identity: 0.781

cgctgcga--ggccgtgaccatgttttcagtacc	CRISPR spacer
--ccacgactggccttgaccatgttttgagtaca	Protospacer
  *..***  **** ************ *****

51. spacer 1.16|1051205|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to LR026998 (unidentified phage genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

cgctgcga--ggccgtgaccatgttttcagtacc	CRISPR spacer
--ccacgactggccttgaccatgttttgagtaca	Protospacer
  *..***  **** ************ *****

52. spacer 1.16|1051205|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_048666 (Salmonella phage YSD1 strain YSD1_PHAGE genome assembly) position: , mismatch: 7, identity: 0.781

cgctgcga--ggccgtgaccatgttttcagtacc	CRISPR spacer
--ccacgactggccttgaccatgttttgagtaca	Protospacer
  *..***  **** ************ *****

53. spacer 1.18|1051328|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MT701590 (Klebsiella phage Miami, complete genome) position: , mismatch: 7, identity: 0.781

ggctgacaa--aatctgccgtcgtctttcttcgc	CRISPR spacer
--acgataaataatctgccgtgttctttcttcgc	Protospacer
   .**.**  **********  ***********

54. spacer 2.2|1068399|33|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 7, identity: 0.788

acgttggtgatacggaatagtggcaataaaatc	CRISPR spacer
aagattgagatacgcaatagtgccaataaaatg	Protospacer
* * * * ****** ******* *********

55. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_006949 (Enterobacteria phage ES18, complete genome) position: , mismatch: 7, identity: 0.781

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
atgaataacaaactaacagacgaacgcgtttc	Protospacer
*. ******************** ***.*.

56. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to AY736146 (Salmonella typhimurium bacteriophage ES18, complete sequence) position: , mismatch: 7, identity: 0.781

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
atgaataacaaactaacagacgaacgcgtttc	Protospacer
*. ******************** ***.*.

57. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_047875 (Salmonella phage UPF_BP1, complete genome) position: , mismatch: 7, identity: 0.781

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
atgaataacaaactaacagacgaacgcgtttc	Protospacer
*. ******************** ***.*.

58. spacer 2.17|1069315|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KM659092 (Ochrobactrum sp. LM19 plasmid pLM19O2, complete sequence) position: , mismatch: 7, identity: 0.781

cattcgagagcaaaaccgctgactaaacttgg	CRISPR spacer
caatcgagagcaaaagcgctgacggcacgttg	Protospacer
** ************ ******* . ** * *

59. spacer 1.5|1050534|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 8, identity: 0.75

ggcattgacccattcgaccctccg---gaaaacgc	CRISPR spacer
tgccttgaccgattcgaccctccgttcggaca---	Protospacer
 ** ****** *************   *.* *

60. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045549 (Streptomyces sp. SYP-A7193 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
cgacgtccgggctggcggcgctggtcacgctg	Protospacer
  *  ************ ****** *****

61. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_002682 (Mesorhizobium japonicum MAFF 303099 plasmid pMLb, complete sequence) position: , mismatch: 8, identity: 0.75

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
agaaacccgggctggcgccgctggacaagctt	Protospacer
. ** .***********.********* ** .

62. spacer 1.6|1050595|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_016655 (Rhodococcus phage REQ1, complete genome) position: , mismatch: 8, identity: 0.75

gcaattccgggctggcgtcgctggacacgcgc	CRISPR spacer
cgaacgtccggctgccgtcgctggacacgagc	Protospacer
  **. .* ***** ************** **

63. spacer 1.15|1051144|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015374 (Pandoraea pnomenusa strain MCB032 plasmid unnamed 3, complete sequence) position: , mismatch: 8, identity: 0.75

tcacgatatgaatatggggcttacgtgcaacc	CRISPR spacer
tgacgatgtgaatatgcggcttacgctcgatg	Protospacer
* *****.******** ********. *.*.

64. spacer 1.15|1051144|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594694 (Variovorax sp. WDL1 plasmid 6) position: , mismatch: 8, identity: 0.75

tcacgatatgaatatggggcttacgtgcaacc	CRISPR spacer
tgacgatgtgaatatgcggcttacgctcgatg	Protospacer
* *****.******** ********. *.*.

65. spacer 1.15|1051144|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010894 (Pseudomonas sp. MRSN12121 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tcacgatatgaatatggggcttacgtgcaacc	CRISPR spacer
tgacgatgtgaatatgcggcttacgctcgatg	Protospacer
* *****.******** ********. *.*.

66. spacer 1.16|1051205|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KC139631 (Salmonella phage FSL SP-019 primase and hypothetical protein genes, complete cds) position: , mismatch: 8, identity: 0.75

cgctgcga--ggccgtgaccatgttttcagtacc	CRISPR spacer
--tcacgactggccttgaccatgttttgagtaca	Protospacer
  ...***  **** ************ *****

67. spacer 1.16|1051205|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KC139680 (Salmonella phage FSL SP-099 tape measure protein gene, partial cds; and pre-tape measure frameshift protein G-Ts, hypothetical proteins, capsid protein E, decorator protein D, prohead protease ClpP, portal protein, head-tail joining protein lambda W, terminase large subunit, TerS, helicase, hypothetical protein, DNA polymerase I, hypothetical proteins, DR0530-like primase, and helix-turn-helix XRE-family of transcriptional regulators genes, complete cds) position: , mismatch: 8, identity: 0.75

cgctgcga--ggccgtgaccatgttttcagtacc	CRISPR spacer
--tcacgactggccttgaccatgttttgagtaca	Protospacer
  ...***  **** ************ *****

68. spacer 1.20|1051450|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccatttgctcgccgttccggccgagttctgag	CRISPR spacer
acatatgctcgccggtccggccgaagcctggc	Protospacer
 *** ********* *********. .***.

69. spacer 2.1|1068338|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050070 (Klebsiella aerogenes strain 035 plasmid p35_C, complete sequence) position: , mismatch: 8, identity: 0.75

tctatgtattcatcaaaaagttcttttatcgt	CRISPR spacer
ccgatgtatttatcaataagttctttactgtt	Protospacer
.* *******.***** *********  *  *

70. spacer 2.1|1068338|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040996 (Klebsiella pneumoniae strain FDAARGOS_775 plasmid unnamed4) position: , mismatch: 8, identity: 0.75

tctatgtattcatcaaaaagttcttttatcgt	CRISPR spacer
ccgatgtatttatcaataagttctttactgtt	Protospacer
.* *******.***** *********  *  *

71. spacer 2.1|1068338|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026209 (Escherichia coli strain ECONIH5 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tctatgtattcatcaaaaagttcttttatcgt	CRISPR spacer
ccgatgtatttatcaataagttctttactgtt	Protospacer
.* *******.***** *********  *  *

72. spacer 2.1|1068338|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030875 (Raoultella sp. X13 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tctatgtattcatcaaaaagttcttttatcgt	CRISPR spacer
ccgatgtatttatcaataagttctttactgtt	Protospacer
.* *******.***** *********  *  *

73. spacer 2.1|1068338|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024432 (Klebsiella pneumoniae strain DA48896 plasmid p48896_3, complete sequence) position: , mismatch: 8, identity: 0.75

tctatgtattcatcaaaaagttcttttatcgt	CRISPR spacer
ccgatgtatttatcaataagttctttactgtt	Protospacer
.* *******.***** *********  *  *

74. spacer 2.1|1068338|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011864 (Enterobacter asburiae strain ATCC 35953 plasmid unnamed 1, complete sequence) position: , mismatch: 8, identity: 0.75

tctatgtattcatcaaaaagttcttttatcgt	CRISPR spacer
ccgatgtatttatcaataagttctttactgtt	Protospacer
.* *******.***** *********  *  *

75. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacgaactaacagacgacgttttgga	Protospacer
*********.*************.  . * .*

76. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacgaactaacagacgacgttttgga	Protospacer
*********.*************.  . * .*

77. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaataacgaactaacagacgacgttttgga	Protospacer
*********.*************.  . * .*

78. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_004813 (Enterobacteria phage BP-4795, complete genome) position: , mismatch: 8, identity: 0.75

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaatagcaaactaacagacgaatacgtttc	Protospacer
*******.*************** ..*.*.

79. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to AJ556162 (Phage BP-4795 complete genome) position: , mismatch: 8, identity: 0.75

accaataacaaactaacagacgatcgcatcaa	CRISPR spacer
accaatagcaaactaacagacgaatacgtttc	Protospacer
*******.*************** ..*.*.

80. spacer 2.14|1069132|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK448721 (Streptococcus phage Javan263, complete genome) position: , mismatch: 8, identity: 0.75

attttttgatgagcaatcttgacaaaattaat	CRISPR spacer
aagatgtgatgagtaatcttgtcaaaattgaa	Protospacer
*   * *******.******* *******.*

81. spacer 2.14|1069132|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to JX560968 (Escherichia phage EC6, complete genome) position: , mismatch: 8, identity: 0.75

-----attttttgatgagcaatcttgacaaaattaat	CRISPR spacer
cagctactt-----tgagcaatcttgctaaaattaat	Protospacer
     *.**     ************ .*********

82. spacer 2.14|1069132|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MG065664 (UNVERIFIED: Campylobacter phage A132, complete genome) position: , mismatch: 8, identity: 0.75

-----attttttgatgagcaatcttgacaaaattaat	CRISPR spacer
tagctactt-----tgagcaatcttgctaaaattaat	Protospacer
     *.**     ************ .*********

83. spacer 1.16|1051205|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020115 (Nodularia spumigena UHCC 0039 plasmid pUHCC0039a, complete sequence) position: , mismatch: 9, identity: 0.719

cgctgcgagg-ccgtgaccatgttttcagtacc	CRISPR spacer
-attgaaaagtccgtgaccatgttttaagtatg	Protospacer
 ..** .*.* *************** ****.

84. spacer 1.16|1051205|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_021780 (Salmonella phage FSL SP-088, complete genome) position: , mismatch: 9, identity: 0.719

cgctgcgaggccgtgaccatgttttcagtacc	CRISPR spacer
ccacgtctggccttgaccatgttttgagtaca	Protospacer
*  .*.  **** ************ *****

85. spacer 1.16|1051205|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KC139515 (Salmonella phage FSL SP-124, complete genome) position: , mismatch: 9, identity: 0.719

cgctgcgaggccgtgaccatgttttcagtacc	CRISPR spacer
ccacgtctggccttgaccatgttttgagtaca	Protospacer
*  .*.  **** ************ *****

86. spacer 1.20|1051450|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

ccatttgctcgccgttccggccgagttctgag	CRISPR spacer
accagtgctcgccgttccagacgagttcgtcg	Protospacer
 *   *************.* *******   *

87. spacer 1.22|1051572|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to KT264824 (Gokushovirus WZ-2015a isolate 76Mky15, complete genome) position: , mismatch: 9, identity: 0.719

gtgagcgaattatcagtagtttcattggtgtt	CRISPR spacer
atactgaaattatccgtagtttctttggtgta	Protospacer
.*.   .******* ******** *******

88. spacer 1.26|1051816|33|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to AB863625 (Ralstonia phage RSK1 DNA, complete genome) position: , mismatch: 9, identity: 0.727

tttttcgatgcgttcacgctccagacgttcggc	CRISPR spacer
catagagcggcgtccaggctccagacgttcggc	Protospacer
. *   *  ****.** ****************

89. spacer 1.26|1051816|33|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MT740737 (Ralstonia phage Firinga, complete genome) position: , mismatch: 9, identity: 0.727

tttttcgatgcgttcacgctccagacgttcggc	CRISPR spacer
catagagcggcgtccaggctccagacgttcggc	Protospacer
. *   *  ****.** ****************

90. spacer 1.26|1051816|33|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MT740741 (Ralstonia phage Hennie, complete genome) position: , mismatch: 9, identity: 0.727

tttttcgatgcgttcacgctccagacgttcggc	CRISPR spacer
catagagcggcgtccaggctccagacgttcggc	Protospacer
. *   *  ****.** ****************

91. spacer 1.27|1051878|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gaggcgcgcacggaggctgtgccgctacgtga	CRISPR spacer
gaggcgggcacagaggctgtgccaggtctcca	Protospacer
****** ****.***********.   * . *

92. spacer 1.29|1052000|32|LS483465|CRISPRCasFinder,CRT matches to MN369756 (Gordonia phage Anon, complete genome) position: , mismatch: 9, identity: 0.719

tccgggagcgtgattacctgcccagcgggaaa	CRISPR spacer
agacgaagcgtgatcatctgcccagcgggcag	Protospacer
    *.********.*.************ *.

93. spacer 2.1|1068338|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 9, identity: 0.719

tctatgtattcatcaaaaagttcttttatcgt	CRISPR spacer
acctcgtatttatcagaaagttcttttaatct	Protospacer
 *. .*****.****.************ . *

94. spacer 2.3|1068461|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_011314 (Aliivibrio salmonicida LFI1238 plasmid pVSAL320, complete sequence) position: , mismatch: 9, identity: 0.719

accaataacaaactaacaggtgtagagcacaa	CRISPR spacer
gctaataacaaattaacaagtgtagatatccc	Protospacer
.*.*********.*****.*******   *

95. spacer 2.3|1068461|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034239 (Aliivibrio salmonicida strain VS224 plasmid pVS320-224, complete sequence) position: , mismatch: 9, identity: 0.719

accaataacaaactaacaggtgtagagcacaa	CRISPR spacer
gctaataacaaattaacaagtgtagatatccc	Protospacer
.*.*********.*****.*******   *

96. spacer 2.5|1068583|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK799832 (Synechococcus phage S-B05, complete genome) position: , mismatch: 9, identity: 0.719

accaataacaaactaacagacga---tcgcatcaa	CRISPR spacer
accaataacaatctaaaagacgaagtttatct---	Protospacer
*********** **** ******   *... *

97. spacer 2.14|1069132|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 9, identity: 0.719

attttttgatgagcaatcttgacaaaattaat	CRISPR spacer
agcgagtgatgagcaatcttgtcgaaattcgt	Protospacer
* .   *************** *.***** .*

98. spacer 2.14|1069132|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 9, identity: 0.719

attttttgatgagcaatcttgacaaaattaat	CRISPR spacer
agcgagtgatgagcaatcttgtcgaaattcgt	Protospacer
* .   *************** *.***** .*

99. spacer 2.19|1069437|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK765592 (Tortoise microvirus 41 isolate 41_SP_100, complete genome) position: , mismatch: 9, identity: 0.719

gatacatctgataatcccagggatttcgctaa	CRISPR spacer
gatacatctgataatccaagcgacaagataaa	Protospacer
***************** ** **.   .. **

100. spacer 2.19|1069437|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK765657 (Tortoise microvirus 2 isolate 2_SP_12, complete genome) position: , mismatch: 9, identity: 0.719

gatacatctgataatcccagggatttcgctaa	CRISPR spacer
gatacatctgataatccaagcgacaagataaa	Protospacer
***************** ** **.   .. **

101. spacer 2.19|1069437|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK765611 (Tortoise microvirus 59 isolate 59_SP_97, complete genome) position: , mismatch: 9, identity: 0.719

gatacatctgataatcccagggatttcgctaa	CRISPR spacer
gatacatctgataatccaagcgacaagataaa	Protospacer
***************** ** **.   .. **

102. spacer 2.19|1069437|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MW149100 (Microvirus sp. isolate gila21, complete genome) position: , mismatch: 9, identity: 0.719

gatacatctgataatcccagggatttcgctaa	CRISPR spacer
gatacatctgataatccaagcgacaagataaa	Protospacer
***************** ** **.   .. **

103. spacer 2.19|1069437|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK765552 (Tortoise microvirus 2 isolate 2_SP_25, complete genome) position: , mismatch: 9, identity: 0.719

gatacatctgataatcccagggatttcgctaa	CRISPR spacer
gatacatctgataatccaagcgacaagataaa	Protospacer
***************** ** **.   .. **

104. spacer 1.4|1050473|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtagccttcgctgcagcgaatccgactcac	CRISPR spacer
ttgaagctttcgctgcagcgaatgcgagatct	Protospacer
 .* ***.*************** ***  . .

105. spacer 1.4|1050473|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT969519 (Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1) position: , mismatch: 10, identity: 0.688

gcgtagccttcgctgcagcgaatccgactcac	CRISPR spacer
ttgaagctttcgctgcagcgaatgcgagatct	Protospacer
 .* ***.*************** ***  . .

106. spacer 1.4|1050473|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtagccttcgctgcagcgaatccgactcac	CRISPR spacer
ttgaagctttcgctgcagcgaatgcgagatct	Protospacer
 .* ***.*************** ***  . .

107. spacer 1.4|1050473|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029094 (Pseudomonas aeruginosa strain AR441 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtagccttcgctgcagcgaatccgactcac	CRISPR spacer
ttgaagctttcgctgcagcgaatgcgagatct	Protospacer
 .* ***.*************** ***  . .

108. spacer 1.4|1050473|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtagccttcgctgcagcgaatccgactcac	CRISPR spacer
ttgaagctttcgctgcagcgaatgcgagatct	Protospacer
 .* ***.*************** ***  . .

109. spacer 1.4|1050473|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027170 (Pseudomonas aeruginosa strain AR_0356 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtagccttcgctgcagcgaatccgactcac	CRISPR spacer
ttgaagctttcgctgcagcgaatgcgagatct	Protospacer
 .* ***.*************** ***  . .

110. spacer 1.8|1050717|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_019749 (Stanieria cyanosphaera PCC 7437 plasmid pSTA7437.02, complete sequence) position: , mismatch: 10, identity: 0.688

cgatcgaccttaaaagcatattcaggcttcaa	CRISPR spacer
ttaaaactattaaaagcagattcaagcttcaa	Protospacer
. *  . . ********* *****.*******

111. spacer 1.20|1051450|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 10, identity: 0.688

ccatttgctcgccgttccggccgagttctgag	CRISPR spacer
gatattgctcgccgagccggccgagttcgcga	Protospacer
    **********  ************  ..

112. spacer 2.1|1068338|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to AP013980 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S31-C4, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

tctatgtattcatcaaaaagttcttttatcgt	CRISPR spacer
ttccagtcttcatcaacaagttcttttacttc	Protospacer
*..  ** ******** ***********.. .

113. spacer 2.16|1069254|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to MK531536 (Acinetobacter baumannii strain MC1 plasmid pMC1.1, complete sequence) position: , mismatch: 10, identity: 0.688

ccatcagtgataaatgctgcaatcgcagtttt	CRISPR spacer
ttatcaatgataaatgctggaatcgatatcaa	Protospacer
..****.************ *****  .*.

114. spacer 2.16|1069254|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027531 (Acinetobacter baumannii strain AR_0088 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ccatcagtgataaatgctgcaatcgcagtttt	CRISPR spacer
ttatcaatgataaatgctggaatcgatatcaa	Protospacer
..****.************ *****  .*.

115. spacer 2.16|1069254|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050386 (Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence) position: , mismatch: 10, identity: 0.688

ccatcagtgataaatgctgcaatcgcagtttt	CRISPR spacer
ttatcaatgataaatgctggaatcgatatcaa	Protospacer
..****.************ *****  .*.

116. spacer 2.16|1069254|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to LT605060 (Acinetobacter calcoaceticus strain NCTC7364 genome assembly, plasmid: 2) position: , mismatch: 10, identity: 0.688

ccatcagtgataaatgctgcaatcgcagtttt	CRISPR spacer
ttatcaatgataaatgctggaatcgatatcaa	Protospacer
..****.************ *****  .*.

117. spacer 2.16|1069254|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020596 (Acinetobacter baumannii strain HWBA8 plasmid pHWBA8_1, complete sequence) position: , mismatch: 10, identity: 0.688

ccatcagtgataaatgctgcaatcgcagtttt	CRISPR spacer
ttatcaatgataaatgctggaatcgatatcaa	Protospacer
..****.************ *****  .*.

118. spacer 2.16|1069254|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040260 (Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ccatcagtgataaatgctgcaatcgcagtttt	CRISPR spacer
ttatcaatgataaatgctggaatcgatatcaa	Protospacer
..****.************ *****  .*.

119. spacer 2.16|1069254|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022285 (Acinetobacter baumannii strain 7804 plasmid pAba7804b, complete sequence) position: , mismatch: 10, identity: 0.688

ccatcagtgataaatgctgcaatcgcagtttt	CRISPR spacer
ttatcaatgataaatgctggaatcgatatcaa	Protospacer
..****.************ *****  .*.

120. spacer 2.16|1069254|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012005 (Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence) position: , mismatch: 10, identity: 0.688

ccatcagtgataaatgctgcaatcgcagtttt	CRISPR spacer
ttatcaatgataaatgctggaatcgatatcaa	Protospacer
..****.************ *****  .*.

121. spacer 2.16|1069254|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to CP033562 (Acinetobacter nosocomialis strain 2010S01-197 plasmid p2010S01-197-1, complete sequence) position: , mismatch: 10, identity: 0.688

ccatcagtgataaatgctgcaatcgcagtttt	CRISPR spacer
ttatcaatgataaatgctggaatcgatatcaa	Protospacer
..****.************ *****  .*.

122. spacer 2.20|1069498|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045342 (Vibrio sp. THAF190c plasmid pTHAF190c_d, complete sequence) position: , mismatch: 10, identity: 0.688

actaatacactgacaattgacgcaatccgcgc	CRISPR spacer
actaatacactgacaaattacgcgcttgataa	Protospacer
**************** * ****. *. ...

123. spacer 2.21|1069559|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045342 (Vibrio sp. THAF190c plasmid pTHAF190c_d, complete sequence) position: , mismatch: 10, identity: 0.688

actaatacactgacaattgacgcaatccgcgc	CRISPR spacer
actaatacactgacaaattacgcgcttgataa	Protospacer
**************** * ****. *. ...

124. spacer 1.3|1050412|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NC_011981 (Agrobacterium vitis S4 plasmid pAtS4e, complete sequence) position: , mismatch: 11, identity: 0.656

aaatcccctaaaggcatagccatcgccgatcg	CRISPR spacer
ggcagttctaaaggcatggccttcgccgatga	Protospacer
..   ..**********.*** ******** .

125. spacer 1.24|1051694|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 11, identity: 0.656

ctggggatctgcatggactcccgcacgttgcg	CRISPR spacer
accacgatcggcatggactaccgcacgtcctt	Protospacer
 . . **** ********* ********. .

126. spacer 2.18|1069376|32|LS483465|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026426 (Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence) position: , mismatch: 11, identity: 0.656

gattaacagtaaacccggggtcttctattcca	CRISPR spacer
atttaacagtaaacccgaagtcttcaggcttg	Protospacer
. ***************..****** . ....

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

659278 : 715738

Escherichia_phage(24.07%)

portal,terminase,holin,tRNA,plate,head,capsid,tail,integrase,protease

attL 674992:675040|attR 705878:705926

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI14507.1\|659278_660703_+\|integrase	prophage integrase	NA	NA	NA	NA
SQI14508.1\|660699_661383_+	Uncharacterised protein	NA	NA	NA	NA
SQI14509.1\|661658_662498_+	Uncharacterised protein	NA	NA	NA	NA
SQI14510.1\|662508_662757_+	Uncharacterised protein	A0A2H4JGW3	uncultured_Caudovirales_phage	1.4e-09	55.7
SQI14511.1\|662749_662968_+	Uncharacterised protein	NA	NA	NA	NA
SQI14512.1\|662960_663185_+	phage-like protein	NA	NA	NA	NA
SQI14513.1\|663189_663489_+	Uncharacterised protein	NA	NA	NA	NA
SQI14514.1\|663485_664943_+	P4 alpha zinc-binding domain-containing protein	A0A2H4JFA4	uncultured_Caudovirales_phage	4.6e-129	67.6
SQI14515.1\|665343_665835_+	Uncharacterised protein	NA	NA	NA	NA
SQI14516.1\|666401_666662_+	Uncharacterised protein	NA	NA	NA	NA
SQI14517.1\|666698_667172_-	Uncharacterised protein	NA	NA	NA	NA
SQI14518.1\|667445_668600_+\|capsid	capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.0e-147	67.3
SQI14519.1\|668644_668845_+\|head,protease	phage pro-head protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.5e-22	72.7
SQI14520.1\|668944_669205_+\|head,protease	phage prohead protease, HK97 family	A0A2H4JB68	uncultured_Caudovirales_phage	1.5e-35	88.0
SQI14521.1\|669206_670436_+\|portal	portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	4.8e-212	86.2
SQI14522.1\|670432_670771_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-23	46.8
SQI14523.1\|670763_671054_+	phage protein	A0A2H4JD08	uncultured_Caudovirales_phage	6.9e-29	57.7
SQI14524.1\|671054_671498_+	Gp74	A0A2H4JAS8	uncultured_Caudovirales_phage	1.2e-51	63.9
SQI14525.1\|671490_671673_+	Uncharacterised protein	NA	NA	NA	NA
SQI14526.1\|671638_671995_+	bacteriophage protein	A0A2H4JHS3	uncultured_Caudovirales_phage	3.3e-57	93.2
SQI14527.1\|671978_673640_+\|terminase	phage terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	94.6
SQI14528.1\|673727_674576_+	Uncharacterised protein	NA	NA	NA	NA
SQI14529.1\|674619_674778_-	Uncharacterised protein	NA	NA	NA	NA
674992:675040	attL	NA	NA	NA	NA
SQI14530.1\|675131_676154_-\|integrase	bacteriophage integrase	A0A218M4I3	Erwinia_phage	1.1e-177	88.8
SQI14531.1\|676153_676726_-	repressor protein	A0A218M4J1	Erwinia_phage	1.3e-98	93.1
SQI14532.1\|676856_677120_+	phage regulatory protein	A0A218M4I5	Erwinia_phage	6.5e-42	92.0
SQI14533.1\|677150_677660_+	phage regulatory protein	A0A0M4QWN1	Salmonella_phage	6.2e-89	98.2
SQI14534.1\|677667_677895_+	bacteriophage protein	A0A0M4RTI3	Salmonella_phage	4.3e-34	92.0
SQI14535.1\|677881_678082_+	signal peptide protein	A0A0M5M7U3	Salmonella_phage	3.7e-29	92.4
SQI14536.1\|678151_678379_+	bacteriophage protein	A0A0M3UL87	Salmonella_phage	8.1e-17	68.1
SQI14537.1\|678378_678597_+	Uncharacterised protein	NA	NA	NA	NA
SQI14538.1\|678596_678818_+	phage protein	A0A0M4S5Q7	Salmonella_phage	1.2e-33	97.3
SQI14539.1\|678818_679091_+	phage protein	A0A218M4I8	Erwinia_phage	4.7e-35	78.9
SQI14540.1\|679087_679369_+	RNA-binding protein	A0A0P0I3U9	Klebsiella_phage	2.2e-11	50.0
SQI14541.1\|679359_681609_+	bacteriophage replication protein	A0A218M4H2	Erwinia_phage	0.0e+00	91.9
SQI14542.1\|681724_682165_+	bacteriophage sos operon Tum protein	A0A218M4I0	Erwinia_phage	1.8e-65	92.0
SQI14543.1\|682244_682976_+	phage protein	Q37850	Escherichia_phage	3.7e-127	93.0
SQI14544.1\|683155_683365_+	Uncharacterised protein	Q6K1F0	Salmonella_virus	6.3e-32	92.8
SQI14545.1\|683572_684277_+	Uncharacterised protein	NA	NA	NA	NA
SQI14546.1\|684695_685718_-\|portal	phage portal pbsx family protein	A0A2I8TV74	Erwinia_phage	9.5e-198	99.4
SQI14547.1\|685714_686461_-	gp2	O80303	Escherichia_phage	5.4e-134	93.1
SQI14548.1\|686460_688230_-\|terminase	Phage terminase ATPase subunit	Q9T0R3	Escherichia_phage	0.0e+00	98.1
SQI14549.1\|688395_689250_+	phage protein V	A0A218M4L9	Erwinia_phage	1.4e-141	88.4
SQI14550.1\|689326_690394_+\|capsid	Phage major capsid protein	A0A0M4R4W2	Salmonella_phage	5.8e-198	99.4
SQI14551.1\|690397_691147_+\|terminase	terminase, endonuclease subunit	Q6K1I5	Salmonella_virus	1.4e-121	93.2
SQI14552.1\|691239_691746_+\|capsid	capsid completion protein	O80306	Escherichia_phage	2.9e-91	100.0
SQI14553.1\|691745_691949_+\|tail	phage tail protein	A0A0M3ULF4	Salmonella_phage	3.4e-30	94.0
SQI14554.1\|691952_692249_+\|holin	phage holin protein	O80308	Escherichia_phage	3.7e-46	98.0
SQI14555.1\|692235_692733_+	phage lysozyme gene	S4TUB1	Salmonella_phage	2.2e-91	96.4
SQI14556.1\|692729_693143_+	lysozyme	O80310	Escherichia_phage	1.0e-62	94.2
SQI14557.1\|693129_693288_+	Phage outer membrane lipoprotein Rz1	A0A218M4L1	Erwinia_phage	5.8e-22	100.0
SQI14558.1\|693250_693718_+\|tail	tail fiber protein	A0A218M4K6	Erwinia_phage	6.7e-82	96.8
SQI14559.1\|693710_694160_+\|tail	tail completion protein S	O80313	Escherichia_phage	2.5e-70	96.0
SQI14560.1\|694228_694870_+\|tail	phage tail protein	Q6K1H6	Salmonella_virus	5.9e-113	97.7
SQI14561.1\|694866_695214_+\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	8.8e-55	95.7
SQI14562.1\|695220_696129_+\|plate	baseplate assembly protein	Q37840	Escherichia_phage	4.4e-154	95.4
SQI14563.1\|696121_696655_+	phage Tail protein I	Q37841	Escherichia_phage	3.8e-97	93.1
SQI14564.1\|696662_698414_+\|tail	tail fiber domain-containing protein	Q37842	Escherichia_phage	1.5e-94	76.2
SQI14565.1\|698416_698941_+\|tail	tail protein	NA	NA	NA	NA
SQI14566.1\|699071_700250_+\|tail	bacteriophage major tail sheath protein FI	Q37844	Escherichia_phage	3.5e-212	94.9
SQI14567.1\|700265_700787_+\|tail	major tail sheath protein FII	Q37845	Escherichia_phage	1.7e-94	100.0
SQI14568.1\|700850_701186_+\|tail	phage tail protein	A0A218M4J8	Erwinia_phage	1.2e-51	98.2
SQI14569.1\|701330_703772_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	89.9
SQI14570.1\|703785_704271_+	gp25	O80317	Escherichia_phage	1.1e-79	93.2
SQI14571.1\|704267_705437_+	phage late control gene D	Q6K1G4	Salmonella_virus	6.4e-206	95.1
SQI14572.1\|706081_706588_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
705878:705926	attR	NA	NA	NA	NA
SQI14573.1\|706711_708694_-	RNA polymerase sigma-70 factor	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
SQI14574.1\|708708_710454_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
SQI14575.1\|710689_710905_-	30S ribosomal subunit protein S21	NA	NA	NA	NA
SQI14576.1\|711132_712146_+\|protease	glycoprotease	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
SQI14577.1\|712396_713008_-	Acyl-phosphate:glycerol-3-phosphateO- acyltransferase PlsY	NA	NA	NA	NA
SQI14578.1\|713114_713474_+	dihydroneopterin aldolase	NA	NA	NA	NA
SQI14579.1\|713570_714392_+	undecaprenyl pyrophosphate phosphatase	NA	NA	NA	NA
SQI14580.1\|714496_715738_-\|tRNA	tRNA nucleotidyltransferase	A0A0F6YPT7	Sinorhizobium_phage	2.5e-91	51.7

DBSCAN-SWA_2

979281 : 1064541

Burkholderia_virus(37.78%)

transposase,tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI14825.1\|979281_980037_-	exonuclease IX	F8WQ40	Bacillus_phage	8.5e-10	31.2
SQI14826.1\|980207_980804_-	L-serine dehydratase 2	NA	NA	NA	NA
SQI14827.1\|980999_981389_-	putative bacteriophage transcriptional regulator	Q6QIE8	Burkholderia_phage	3.8e-30	53.4
SQI14828.1\|981385_981814_-	Mu-like prophage protein gp16	A4JWM5	Burkholderia_virus	3.7e-26	49.6
SQI14829.1\|982008_982236_-	Uncharacterised protein	NA	NA	NA	NA
SQI14830.1\|982232_982922_-	Phage associated protein	A0A1W6DYA0	Aeromonas_phage	2.5e-24	33.3
SQI14831.1\|982908_983205_-	Uncharacterised protein	NA	NA	NA	NA
SQI14832.1\|983201_983390_-	Uncharacterised protein	NA	NA	NA	NA
SQI14833.1\|983469_984081_-	Protein of uncharacterised function (DUF3164)	A0A2D1GNM4	Pseudomonas_phage	1.2e-75	68.5
SQI14834.1\|984098_984368_-	Uncharacterised protein	NA	NA	NA	NA
SQI14835.1\|984370_985537_-	Gp08	A4JWN1	Burkholderia_virus	2.2e-121	60.9
SQI14836.1\|985547_987317_-\|transposase	Tn552/IS1604 rve transposase	Q6QIE0	Burkholderia_phage	2.4e-228	67.8
SQI14837.1\|987320_988229_-	Protein of uncharacterised function (DUF3102)	A4JWN3	Burkholderia_virus	6.3e-76	55.4
SQI14838.1\|988238_988544_-	Uncharacterised protein	Q5ZR02	Pseudomonas_phage	9.2e-24	58.0
SQI14839.1\|988540_988765_-	phage-associated protein, BcepMu gp16 family	NA	NA	NA	NA
SQI14840.1\|988853_989264_+	HTH-type transcriptional regulator immR	NA	NA	NA	NA
SQI14841.1\|989299_989833_+	Uncharacterised protein	NA	NA	NA	NA
SQI14842.1\|989880_990651_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	2.6e-99	65.3
SQI14843.1\|990898_991498_+	Uncharacterised protein	NA	NA	NA	NA
SQI14844.1\|991391_991721_-	Uncharacterised protein	NA	NA	NA	NA
SQI14845.1\|991852_992203_+	membrane protein	A4JWP3	Burkholderia_virus	1.2e-22	53.9
SQI14846.1\|992199_992928_+	Phage lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	2.4e-62	59.3
SQI14847.1\|992917_993571_+	putative lipoprotein	J9SVN7	Pseudomonas_phage	3.4e-07	32.6
SQI14848.1\|993567_993900_+	putative membrane protein	Q6QIC4	Burkholderia_phage	1.1e-17	47.7
SQI14849.1\|993892_994204_+	Gp26	A0A0S4L0A3	Pseudomonas_phage	3.2e-32	63.6
SQI14850.1\|994203_994749_+	Gp1	A4JWJ3	Burkholderia_virus	1.2e-58	67.6
SQI14851.1\|994745_996269_+	Mu-like prophage FluMu protein gp28	A4JWJ4	Burkholderia_virus	5.8e-183	62.2
SQI14852.1\|996268_997765_+	Gp29	A4JWJ5	Burkholderia_virus	1.7e-174	61.5
SQI14853.1\|997745_998567_+	Phage Mu F virion morphogenesis protein	Q6QIB9	Burkholderia_phage	2.6e-97	61.9
SQI14854.1\|998569_999028_+	putative bacteriophage protein	Q6QIB8	Burkholderia_phage	3.8e-29	43.0
SQI14855.1\|999242_1000340_+	Gp32	A4JWJ9	Burkholderia_virus	1.1e-95	49.6
SQI14856.1\|1000353_1001307_+	Gp34	A4JWK0	Burkholderia_virus	1.7e-63	43.3
SQI14857.1\|1001317_1001674_+	putative membrane protein	NA	NA	NA	NA
SQI14858.1\|1001624_1002122_+	Mu-like prophage protein gp36	A4JWK2	Burkholderia_virus	6.8e-32	51.7
SQI14859.1\|1002121_1002586_+	Conserved phage-related protein	Q6QIB2	Burkholderia_phage	7.4e-41	52.3
SQI14860.1\|1002585_1002837_+	gp12	NA	NA	NA	NA
SQI14861.1\|1002826_1004254_+\|tail	bacteriophage tail sheath protein	A4JWK5	Burkholderia_virus	4.1e-215	78.0
SQI14862.1\|1004253_1004775_+\|tail	tail core protein	A4JWK6	Burkholderia_virus	1.0e-67	68.8
SQI14863.1\|1004777_1005059_+	Uncharacterised protein	NA	NA	NA	NA
SQI14864.1\|1005157_1005472_+	Conserved hypothetical prophage protein	NA	NA	NA	NA
SQI14865.1\|1005437_1005575_+	Uncharacterised protein	NA	NA	NA	NA
SQI14866.1\|1005667_1008133_+	putative bacteriophage protein	A4JWL0	Burkholderia_virus	7.4e-172	42.7
SQI14867.1\|1008132_1009017_+	P2 GpU	A4JWL1	Burkholderia_virus	7.5e-50	46.6
SQI14868.1\|1009016_1009229_+\|tail	putative bacteriophage tail fibre protein	Q6QIA3	Burkholderia_phage	9.0e-18	57.1
SQI14869.1\|1009216_1010386_+	putative bacteriophage regulatory protein	Q6QIA2	Burkholderia_phage	4.6e-87	48.9
SQI14870.1\|1010385_1010898_+\|plate	putative bacteriophage baseplate protein	A4JWL4	Burkholderia_virus	4.7e-20	37.4
SQI14871.1\|1010952_1011300_+\|plate	putative bacteriophage baseplate protein	Q6QIA0	Burkholderia_phage	7.8e-35	63.3
SQI14872.1\|1011290_1012394_+\|plate	putative bacteriophage baseplate assembly protein	A4JWL6	Burkholderia_virus	1.0e-104	53.0
SQI14873.1\|1012386_1012965_+\|tail	putative bacteriophage tail fiber protein	A4JWL7	Burkholderia_virus	4.9e-66	65.3
SQI14874.1\|1012967_1013921_+\|tail	bacteriophage tail fiber protein	M1TAS6	Escherichia_phage	2.9e-63	55.6
SQI14875.1\|1013920_1014526_+\|tail	putative bacteriophage tail fiber assembly protein	A0A218M4J2	Erwinia_phage	7.6e-62	60.1
SQI14876.1\|1014497_1014938_-\|tail	Caudovirales tail fibre assembly protein	A0A0F7LDZ0	Escherichia_phage	1.5e-46	65.5
SQI14877.1\|1015349_1015931_+	DNA-invertase	A0A0A7NPV4	Enterobacteria_phage	7.6e-67	72.1
SQI14878.1\|1015900_1016752_-	L-serine dehydratase 2	NA	NA	NA	NA
SQI14879.1\|1016810_1018100_-	serine transporter	NA	NA	NA	NA
SQI14880.1\|1018664_1020029_-	Decarboxylase family protein	NA	NA	NA	NA
SQI14881.1\|1020141_1020990_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	A0A2I7SAX1	Vibrio_phage	2.7e-41	37.5
SQI14882.1\|1021058_1021604_+	SecY interacting protein Syd	NA	NA	NA	NA
SQI14883.1\|1022215_1022545_+	Domain of uncharacterised function, DUF446	NA	NA	NA	NA
SQI14884.1\|1022544_1023327_+	RNA pseudouridylate synthase	NA	NA	NA	NA
SQI14885.1\|1023345_1023795_+\|tRNA	putative flavoprotein YqcA (clustered with tRNA pseudouridine synthase C)	NA	NA	NA	NA
SQI14886.1\|1024276_1025635_+	glucarate transporter	NA	NA	NA	NA
SQI14887.1\|1025631_1026972_+	glucarate dehydratase 2	NA	NA	NA	NA
SQI14888.1\|1026992_1028333_+	glucarate dehydratase 1	NA	NA	NA	NA
SQI14889.1\|1028410_1029553_+	Glycerate kinase	W6LM47	Streptococcus_phage	3.5e-47	41.0
SQI14890.1\|1029596_1032353_-	BarA sensory histidine kinase (VarS / GacS)	A0A1V0SGX0	Hokovirus	3.0e-52	29.3
SQI14891.1\|1032410_1033706_+	23S rRNA (uracil-5-)-methyltransferase RumA	A0A2K5B251	Erysipelothrix_phage	1.4e-36	28.3
SQI14892.1\|1033757_1035992_+	GTP pyrophosphokinase	NA	NA	NA	NA
SQI14893.1\|1036145_1036433_+	putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain	NA	NA	NA	NA
SQI14894.1\|1036637_1037684_-	possible secreted protein	NA	NA	NA	NA
SQI14895.1\|1037698_1038784_-	possible secreted protein	NA	NA	NA	NA
SQI14896.1\|1038812_1039304_-	fimbrial subunit	NA	NA	NA	NA
SQI14897.1\|1039345_1039831_-	fimbrial subunit	NA	NA	NA	NA
SQI14898.1\|1039830_1040331_-	Protein sfmH Flags: Precursor	NA	NA	NA	NA
SQI14899.1\|1040356_1041130_-	chaperone protein PapD	NA	NA	NA	NA
SQI14900.1\|1041142_1043467_-	outer membrane usher protein	NA	NA	NA	NA
SQI14901.1\|1043917_1044505_-	fimbrial subunit	NA	NA	NA	NA
SQI14902.1\|1045110_1045911_+	Nucleoside triphosphate pyrophospho hydrolase MazG	NA	NA	NA	NA
SQI14903.1\|1046138_1047776_+	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.2e-154	51.0
SQI14904.1\|1047858_1049157_+	enolase	A0A1X9I5Z8	Streptococcus_phage	1.3e-130	58.6
SQI14905.1\|1049292_1049964_+	Queuosine Biosynthesis QueE Radical SAM	A0A2I7S8X1	Vibrio_phage	3.9e-14	24.6
SQI14906.1\|1049994_1050141_+	Uncharacterised protein	NA	NA	NA	NA
SQI14907.1\|1050418_1051144_-	Domain of uncharacterised function (DUF2825)	NA	NA	NA	NA
SQI14908.1\|1051143_1051596_-	Domain of uncharacterised function (DUF2825)	NA	NA	NA	NA
SQI14909.1\|1052157_1052955_+	beta-lactamase	NA	NA	NA	NA
SQI14910.1\|1053044_1053407_-	6-pyruvoyl tetrahydrobiopterin synthase	NA	NA	NA	NA
SQI14911.1\|1053830_1055630_+	sulfite reductase subunit alpha	NA	NA	NA	NA
SQI14912.1\|1055629_1057342_+	sulfite reductase subunit beta	NA	NA	NA	NA
SQI14913.1\|1057417_1058152_+	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA
SQI14914.1\|1058364_1059108_-	secreted protein in the Sop family; transferred to eukaryotic cells	NA	NA	NA	NA
SQI14915.1\|1059092_1059317_-	secreted protein in the Sop family; transferred to eukaryotic cells	NA	NA	NA	NA
SQI14916.1\|1059761_1062425_+	helicase	NA	NA	NA	NA
SQI14917.1\|1062436_1063996_+	crispr-associated protein, Cse1 family	NA	NA	NA	NA
SQI14918.1\|1063992_1064541_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1235528 : 1289204

Escherichia_phage(27.27%)

integrase,transposase

attL 1221505:1221520|attR 1275891:1275906

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1221505:1221520	attL	NA	NA	NA	NA
SQI15089.1\|1235528_1235987_-\|integrase	prophage integrase (pseudogene)	A0A1B5FPC6	Escherichia_phage	2.4e-44	65.7
SQI15090.1\|1235999_1236776_-\|integrase	prophage integrase (pseudogene)	A0A1B5FPC6	Escherichia_phage	9.1e-84	61.3
SQI15091.1\|1237262_1238111_-	restriction methylase	NA	NA	NA	NA
SQI15092.1\|1238186_1238381_-	Enterobacterial protein of uncharacterised function (DUF957)	NA	NA	NA	NA
SQI15093.1\|1238406_1238898_-	Uncharacterised protein	NA	NA	NA	NA
SQI15094.1\|1238894_1239272_-	toxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA
SQI15095.1\|1239331_1239979_-	antitoxin of the YeeV-YeeU toxin-antitoxin system	NA	NA	NA	NA
SQI15096.1\|1239975_1240350_-	antitoxin YeeU	NA	NA	NA	NA
SQI15097.1\|1240373_1240595_-	Protein of uncharacterised function (DUF987)	NA	NA	NA	NA
SQI15098.1\|1240615_1241095_-	prophage protein	NA	NA	NA	NA
SQI15099.1\|1241106_1241577_-	antirestriction protein	A0A1S5R3R9	Pseudomonas_phage	1.5e-09	35.1
SQI15100.1\|1241844_1242663_-	prophage protein	A0A2C9CX26	Yersinia_phage	9.7e-44	37.2
SQI15101.1\|1242782_1243016_-	cytoplasmic protein	NA	NA	NA	NA
SQI15102.1\|1243092_1243545_-	Uncharacterised protein	NA	NA	NA	NA
SQI15103.1\|1243604_1244147_-	membrane protein	NA	NA	NA	NA
SQI15104.1\|1244209_1244662_-	Uncharacterised protein	J7KKK1	Erwinia_phage	1.0e-34	50.8
SQI15105.1\|1244658_1245111_-	Uncharacterized lipoprotein yafY precursor	NA	NA	NA	NA
SQI15106.1\|1245146_1245782_-	Uncharacterised protein	NA	NA	NA	NA
SQI15107.1\|1245778_1246492_-	transcriptional regulator	NA	NA	NA	NA
SQI15108.1\|1246533_1246722_-	Uncharacterised protein	NA	NA	NA	NA
SQI15109.1\|1246752_1247628_-	GTPase	NA	NA	NA	NA
SQI15110.1\|1248287_1248656_+\|transposase	putative transposase subunit	A0A0P0ZBY2	Stx2-converting_phage	7.0e-34	90.0
SQI15111.1\|1248655_1249717_+\|transposase	transposase IS66	A0A0P0ZEB3	Stx2-converting_phage	5.4e-180	88.4
SQI15112.1\|1250061_1252848_+	Uncharacterised protein	Q6NE04	Leptospira_phage	4.8e-119	32.1
SQI15113.1\|1252862_1254908_+	Uncharacterised protein	NA	NA	NA	NA
SQI15114.1\|1254900_1256079_+	T5orf172 domain	NA	NA	NA	NA
SQI15115.1\|1256360_1257341_-\|transposase	IS5 transposase	Q38213	Escherichia_phage	3.6e-186	99.4
SQI15116.1\|1257366_1257705_+	Putative secreted protein	NA	NA	NA	NA
SQI15117.1\|1257756_1258560_-	glycerol uptake facilitator protein	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.8e-11	27.6
SQI15118.1\|1258613_1260437_-	glycerol dehydratase	NA	NA	NA	NA
SQI15119.1\|1260449_1260875_-	propanediol dehydratase small subunit	NA	NA	NA	NA
SQI15120.1\|1260877_1261462_-	propanediol dehydratase medium subunit	NA	NA	NA	NA
SQI15121.1\|1261474_1263142_-	propanediol dehydratase large subunit	NA	NA	NA	NA
SQI15122.1\|1263555_1263984_+	ATP/cobalamin adenosyltransferase	NA	NA	NA	NA
SQI15123.1\|1264005_1265169_+	alcohol dehydrogenase	NA	NA	NA	NA
SQI15124.1\|1265189_1265543_+	propanediol dehydratase reactivation protein	NA	NA	NA	NA
SQI15125.1\|1265543_1266074_+	ATP/cobalamin adenosyltransferase	NA	NA	NA	NA
SQI15126.1\|1266051_1267977_-	Propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA
SQI15127.1\|1268078_1269176_-	glycerol dehydrogenase	NA	NA	NA	NA
SQI15128.1\|1269736_1270087_+	Dihydroxyacetone kinase	NA	NA	NA	NA
SQI15129.1\|1271344_1272040_+	transcriptional regulator	NA	NA	NA	NA
SQI15130.1\|1272050_1272794_-	transcriptional regulator	NA	NA	NA	NA
SQI15131.1\|1272754_1273213_-	Propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA
SQI15132.1\|1273224_1273980_-	DNA-binding transcriptional regulator DhaR	NA	NA	NA	NA
SQI15133.1\|1274093_1275191_-	glycerol dehydrogenase	NA	NA	NA	NA
SQI15134.1\|1275747_1276818_+	PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK	NA	NA	NA	NA
1275891:1275906	attR	NA	NA	NA	NA
SQI15135.1\|1276828_1277461_+	PTS-dependent dihydroxyacetone kinase, ADP-binding subunit dhaL	NA	NA	NA	NA
SQI15136.1\|1277471_1278890_+	phosphoenolpyruvate-protein phosphotransferase	NA	NA	NA	NA
SQI15137.1\|1278964_1280614_+	Dihydroxyacetone kinase	NA	NA	NA	NA
SQI15138.1\|1280717_1281488_-	siderophore-interacting protein	NA	NA	NA	NA
SQI15139.1\|1281728_1282013_+	transcriptional regulator	NA	NA	NA	NA
SQI15140.1\|1282150_1282315_+	DNA methyltransferase	NA	NA	NA	NA
SQI15141.1\|1282357_1283647_-	Transposase and inactivated derivatives	A0A2D1GQC1	Lysinibacillus_phage	9.5e-86	40.4
SQI15142.1\|1283668_1284181_-	lipoprotein signal peptidase	NA	NA	NA	NA
SQI15143.1\|1284184_1285081_-	zinc transporter ZitB	NA	NA	NA	NA
SQI15144.1\|1285176_1285584_+	copper efflux regulator	NA	NA	NA	NA
SQI15145.1\|1285695_1285917_+	DNA methyltransferase	NA	NA	NA	NA
SQI15146.1\|1285913_1288487_+	type III restriction enzyme, res subunit	NA	NA	NA	NA
SQI15147.1\|1288577_1289204_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1836811 : 1845982

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI15614.1\|1836811_1837759_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
SQI15615.1\|1837742_1838474_+	putative permease transmembrane component	NA	NA	NA	NA
SQI15616.1\|1838454_1838562_-	membrane protein	NA	NA	NA	NA
SQI15617.1\|1838621_1839353_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
SQI15618.1\|1839575_1841261_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
SQI15619.1\|1841257_1841977_+	two-component system response regulator	NA	NA	NA	NA
SQI15620.1\|1842023_1842491_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
SQI15621.1\|1842547_1843078_-	lipoprotein	NA	NA	NA	NA
SQI15622.1\|1843249_1843708_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
SQI15623.1\|1843948_1845982_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_5

1920219 : 1926516

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI15683.1\|1920219_1921623_+	Colanic acid biosynthesis protein wcaM	A0A291LBB9	Klebsiella_phage	1.7e-19	31.9
SQI15684.1\|1921800_1922694_+	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
SQI15685.1\|1923070_1924156_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
SQI15686.1\|1924155_1925055_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
SQI15687.1\|1925102_1925981_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	3.9e-107	64.1
SQI15688.1\|1925985_1926516_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.9e-51	55.9

DBSCAN-SWA_6

2129845 : 2176794

Salmonella_phage(58.18%)

terminase,holin,tRNA,plate,head,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI15891.1\|2129845_2130952_-\|tRNA	tRNA-specific 2-thiouridylase MnmA	NA	NA	NA	NA
SQI15892.1\|2131005_2131467_-	mutT family protein	NA	NA	NA	NA
SQI15893.1\|2131478_2131808_-	putative secreted protein	NA	NA	NA	NA
SQI15894.1\|2131804_2132542_-	putative ribosomal large subunit pseudouridine synthase	NA	NA	NA	NA
SQI15895.1\|2132641_2133892_+	isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
SQI15896.1\|2134005_2135148_-	Integrase	O21929	Phage_21	8.2e-174	80.3
SQI15897.1\|2135137_2135374_-	excisionase	NA	NA	NA	NA
SQI15898.1\|2135423_2136131_-	prophage protein	A0A075B8H2	Enterobacteria_phage	9.3e-35	91.0
SQI15899.1\|2136134_2136608_-	DNA N-4 cytosine methyltransferase M.NgoMXV	H9C170	Pectobacterium_phage	2.1e-67	78.8
SQI15900.1\|2136607_2137339_-	conserved hypothetical bacteriophage protein	C6ZR30	Salmonella_phage	1.8e-44	77.3
SQI15901.1\|2137409_2137949_-	phage protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
SQI15902.1\|2138085_2138913_-	bacteriophage protein	Q8HAA2	Salmonella_phage	4.1e-151	98.5
SQI15903.1\|2138970_2139504_-	putative prophage protein	A0A192Y6G0	Salmonella_phage	6.0e-95	98.3
SQI15904.1\|2140156_2140852_-	regulatory protein	Q8HAA0	Salmonella_phage	4.6e-127	99.6
SQI15905.1\|2140949_2141174_+	DNA-binding protein	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
SQI15906.1\|2141202_2141757_+	putative prophage product	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
SQI15907.1\|2142892_2143117_+	phage protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
SQI15908.1\|2143113_2144073_+	Replication protein O	U5P0A0	Shigella_phage	1.6e-117	80.9
SQI15909.1\|2144074_2144557_+	phage protein	Q8HA95	Salmonella_phage	1.6e-86	98.8
SQI15910.1\|2144556_2145450_+	putative DNA methyl transferase	Q8HA94	Salmonella_phage	8.7e-163	93.9
SQI15911.1\|2145446_2145836_+	crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	7.1e-69	97.7
SQI15912.1\|2145852_2146713_+	phage protein	Q8HA92	Salmonella_phage	2.7e-161	98.6
SQI15913.1\|2146720_2147710_+	putative cytoplasmic protein	A0A1C9IHZ5	Salmonella_phage	1.5e-192	98.8
SQI15914.1\|2147740_2148571_+	Antitermination protein Q homolog from lambdoid prophage Qin	A0A1B5FPA5	Escherichia_phage	5.0e-56	43.3
SQI15915.1\|2148677_2149601_-	Uncharacterised protein	A0A1B5FPA3	Escherichia_phage	1.6e-42	56.4
SQI15916.1\|2149751_2150138_+\|holin	holin	A0A192Y8P2	Salmonella_phage	8.9e-56	92.2
SQI15917.1\|2150124_2150406_+	prophage membrane protein	A0A0U2SHD1	Escherichia_phage	8.2e-19	51.1
SQI15918.1\|2150405_2151020_+	bacteriophage protein	Q8HA86	Salmonella_phage	1.4e-108	93.1
SQI15919.1\|2151016_2151556_+	putative secreted protein	A0A291LBG9	Klebsiella_phage	1.3e-07	49.3
SQI15920.1\|2151598_2151976_+	hypothetical prophage protein	Q6UAR9	Klebsiella_phage	2.2e-43	68.5
SQI15921.1\|2152072_2152300_+	putative bacteriophage protein	NA	NA	NA	NA
SQI15922.1\|2152389_2152779_+	Gp74	K7P7P6	Enterobacteria_phage	2.2e-46	73.0
SQI15923.1\|2152911_2153376_+\|terminase	terminase	Q9B019	Phage_GMSE-1	1.7e-48	62.1
SQI15924.1\|2153329_2155072_+\|terminase	phage terminase, large subunit	A0A0U2C138	Paracoccus_phage	5.3e-140	44.5
SQI15925.1\|2155071_2156376_+	histone H1	K7PJU5	Enterobacteria_phage	1.9e-219	86.6
SQI15926.1\|2156389_2157238_+	peptidase	K7PH05	Enterobacteria_phage	7.5e-132	88.2
SQI15927.1\|2157247_2158465_+\|capsid	capsid protein	K7PM57	Enterobacteria_phage	4.6e-199	88.9
SQI15928.1\|2158508_2158751_+	Uncharacterised protein	K7PHI6	Enterobacteria_phage	2.7e-10	66.0
SQI15929.1\|2158750_2159074_+	phage protein	K7PKT4	Enterobacteria_phage	2.2e-31	57.4
SQI15930.1\|2159085_2159499_+\|head,tail	phage head-tail adaptor	A0A192Y6C2	Salmonella_phage	6.0e-50	74.8
SQI15931.1\|2159470_2159983_+	phage protein	Q8HAC8	Salmonella_phage	6.2e-81	87.1
SQI15932.1\|2159979_2160525_+	phage protein	A0A192Y5U4	Salmonella_phage	3.6e-87	84.7
SQI15933.1\|2160546_2160711_+	Protein of uncharacterised function (DUF2635)	Q8HAC6	Salmonella_phage	8.4e-24	96.3
SQI15934.1\|2160700_2162197_+\|tail	tail sheath protein	Q8HAC5	Salmonella_phage	3.0e-277	99.4
SQI15935.1\|2162196_2162553_+\|tail	tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
SQI15936.1\|2162549_2162876_+	phage protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
SQI15937.1\|2162960_2164889_+	transglycosylase	A0A192Y6D8	Salmonella_phage	0.0e+00	99.1
SQI15938.1\|2164922_2166263_+	DNA circulation family protein	A0A192Y5U9	Salmonella_phage	1.7e-250	99.6
SQI15939.1\|2166259_2167318_+\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	6.6e-202	99.7
SQI15940.1\|2167317_2167764_+\|plate	baseplate assembly protein	A0A192Y8K5	Salmonella_phage	1.8e-76	100.0
SQI15941.1\|2167723_2167855_-	Uncharacterised protein	NA	NA	NA	NA
SQI15942.1\|2167856_2168270_+	phage protein GP46	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
SQI15943.1\|2168262_2169342_+\|tail	tail protein	A0A192Y6E4	Salmonella_phage	1.2e-203	99.2
SQI15944.1\|2169344_2169932_+\|tail	phage tail protein	A0A192Y5V3	Salmonella_phage	1.4e-113	99.0
SQI15945.1\|2169918_2171352_+\|tail	putative phage tail fibre protein	A0A192Y7M1	Salmonella_phage	3.2e-191	69.2
SQI15946.1\|2171351_2171927_+\|tail	putative phage tail protein	Q8HAB3	Salmonella_phage	1.8e-100	93.1
SQI15947.1\|2171916_2172129_+	phage gene	F1BUK1	Cronobacter_phage	1.6e-11	60.9
SQI15948.1\|2172166_2173300_-	acetyltransferase family protein	A0A2H4JA46	uncultured_Caudovirales_phage	1.6e-36	33.0
SQI15949.1\|2173931_2174393_+	Error-prone repair protein UmuD	A0A1W6JNS2	Morganella_phage	5.5e-36	59.1
SQI15950.1\|2174395_2175664_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	7.3e-240	96.0
SQI15951.1\|2175656_2176328_-	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.8e-80	61.3
SQI15952.1\|2176581_2176794_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-20	92.6

DBSCAN-SWA_7

2811247 : 2863807

Escherichia_phage(17.65%)

transposase,protease,tRNA,integrase

attL 2835779:2835793|attR 2873725:2873739

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI16559.1\|2811247_2813296_-\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
SQI16560.1\|2813315_2814002_-	ProP effector	NA	NA	NA	NA
SQI16561.1\|2814099_2814669_-	GAF domain-containing protein	NA	NA	NA	NA
SQI16562.1\|2814725_2816009_+	Paraquat-inducible protein A	NA	NA	NA	NA
SQI16563.1\|2815977_2818611_+	mce-related protein	NA	NA	NA	NA
SQI16564.1\|2818586_2820128_+	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
SQI16565.1\|2820241_2820481_+	conserved domain protein	NA	NA	NA	NA
SQI16566.1\|2820591_2820783_+	putative secreted protein	NA	NA	NA	NA
SQI16567.1\|2820801_2821449_-	Serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	6.5e-59	51.4
SQI16568.1\|2821674_2821839_-	membrane protein	NA	NA	NA	NA
SQI16569.1\|2822123_2822846_-	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
SQI16570.1\|2823530_2823926_+	protein ycgX	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
SQI16571.1\|2824254_2824731_+	Uncharacterised protein	NA	NA	NA	NA
SQI16572.1\|2825124_2825544_-	acetyltransferase	NA	NA	NA	NA
SQI16573.1\|2826634_2826973_-\|transposase	transposase	NA	NA	NA	NA
SQI16574.1\|2826935_2827244_-\|transposase	transposase, Mutator family protein	A0A218MNI5	uncultured_virus	7.9e-15	60.3
SQI16575.1\|2827302_2829663_-	leucine-rich repeat protein	Q9MBL9	Phage_Gifsy-2	1.4e-55	72.7
SQI16576.1\|2830008_2830278_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	8.7e-18	55.2
SQI16577.1\|2830651_2831005_-	Protein of uncharacterised function (DUF2511)	NA	NA	NA	NA
SQI16578.1\|2831021_2831897_-	membrane protein	NA	NA	NA	NA
SQI16579.1\|2831897_2832272_-	Copper resistance protein CopC	NA	NA	NA	NA
SQI16580.1\|2832409_2832640_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.0e-14	61.8
SQI16581.1\|2832747_2833404_+	Putative amido hydrolase	NA	NA	NA	NA
SQI16582.1\|2833427_2834126_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.8e-07	40.4
SQI16583.1\|2834160_2836212_-	oligopeptidase	NA	NA	NA	NA
2835779:2835793	attL	NA	NA	NA	NA
SQI16584.1\|2836424_2837084_-	inner membrane protein YebE	NA	NA	NA	NA
SQI16585.1\|2837177_2837531_-	protein YebF	NA	NA	NA	NA
SQI16586.1\|2837598_2837889_-	DNA damage-inducible gene in SOS regulon-dependent on cyclic AMP and H-NS	NA	NA	NA	NA
SQI16587.1\|2838019_2839198_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
SQI16588.1\|2839297_2839939_-	KHG/KDPG aldolase	NA	NA	NA	NA
SQI16589.1\|2839976_2841788_-	6-phosphogluconate dehydratase	NA	NA	NA	NA
SQI16590.1\|2842022_2843498_-	glucose 6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.6e-79	37.5
SQI16591.1\|2843839_2844709_+	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
SQI16592.1\|2844832_2846275_+	pyruvate kinase A	NA	NA	NA	NA
SQI16593.1\|2846347_2847319_-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
SQI16594.1\|2847435_2848755_-	Cell wall endopeptidase family M23/M37	A8ATH6	Listeria_phage	2.6e-14	40.9
SQI16595.1\|2848770_2849772_-	high-affinity zinc transporter periplasmic protein	NA	NA	NA	NA
SQI16596.1\|2849793_2850549_+	high-affinity zinc transporter ATPase	G3M9Y6	Bacillus_virus	8.5e-18	29.4
SQI16597.1\|2850545_2851331_+	high-affinity zinc uptake system membrane protein	NA	NA	NA	NA
SQI16598.1\|2851409_2852420_-	Holliday junction DNA helicase	A0A127AWE7	Bacillus_phage	2.4e-07	25.9
SQI16599.1\|2852428_2853040_-	Holliday junction ATP-dependent DNA helicase ruvA	NA	NA	NA	NA
SQI16600.1\|2853400_2853982_-	membrane protein	NA	NA	NA	NA
SQI16601.1\|2854302_2854902_+	protein yebB	NA	NA	NA	NA
SQI16602.1\|2854903_2855425_-	crossover junction endodeoxyribonuclease	G3MA90	Bacillus_virus	2.6e-10	35.1
SQI16603.1\|2855461_2856202_-	Probable transcriptional regulatory protein YebC	NA	NA	NA	NA
SQI16604.1\|2856231_2856684_-	dATP pyrophosphohydrolase	NA	NA	NA	NA
SQI16605.1\|2856786_2858559_-\|tRNA	aspartyl-tRNA synthetase	NA	NA	NA	NA
SQI16606.1\|2858883_2859450_+	putative isochorismatase hydrolase	NA	NA	NA	NA
SQI16607.1\|2859446_2859557_+	Uncharacterised protein	NA	NA	NA	NA
SQI16608.1\|2859772_2860444_+	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	5.3e-80	60.4
SQI16609.1\|2860763_2862866_-	SspH1	Q9MBL9	Phage_Gifsy-2	1.0e-28	48.5
SQI16610.1\|2863037_2863559_-\|integrase	integrase	A0A077SLK2	Escherichia_phage	4.0e-91	89.6
SQI16611.1\|2863546_2863807_-\|integrase	integrase	A0A077SLK2	Escherichia_phage	2.4e-12	76.6
2873725:2873739	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2995615 : 3063258

Salmonella_phage(53.7%)

terminase,holin,tRNA,head,tail,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI16743.1\|2995615_2995945_+\|tRNA	tRNA 2-thiouridine synthesizing protein E	NA	NA	NA	NA
SQI16744.1\|2995941_2996223_-	acylphosphatase	NA	NA	NA	NA
SQI16745.1\|2996271_2997060_-	transcriptional regulator	NA	NA	NA	NA
SQI16746.1\|2997076_2997625_-	kinase inhibitor	NA	NA	NA	NA
SQI16747.1\|2997839_2999051_+	LSU m5C1962 methyl transferase RlmI	NA	NA	NA	NA
SQI16748.1\|2999108_2999426_+	hemimethylated DNA binding protein YccV	NA	NA	NA	NA
SQI16749.1\|2999471_2999885_-	Succinyl-CoA synthetase alpha subunit-related enzyme	NA	NA	NA	NA
SQI16750.1\|3000058_3000721_+	UPF0319 protein YccT precursor	NA	NA	NA	NA
SQI16751.1\|3000815_3001274_+	methylglyoxal synthase	NA	NA	NA	NA
SQI16752.1\|3001309_3003364_-	helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
SQI16753.1\|3003487_3003934_+	Inner membrane protein YccF	NA	NA	NA	NA
SQI16754.1\|3003952_3006106_+	Putative efflux (PET) family inner membrane protein YccS	NA	NA	NA	NA
SQI16755.1\|3006092_3006698_-	DNA transformation protein TfoX	NA	NA	NA	NA
SQI16756.1\|3006914_3007424_+	cell division inhibitor	NA	NA	NA	NA
SQI16757.1\|3007780_3008833_+	outer membrane protein A	NA	NA	NA	NA
SQI16758.1\|3008904_3009357_-	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA
SQI16759.1\|3009542_3011303_+\|protease	protease	NA	NA	NA	NA
SQI16760.1\|3011371_3011890_+	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	NA	NA	NA	NA
SQI16761.1\|3012412_3012976_-	lipoprotein	NA	NA	NA	NA
SQI16762.1\|3012972_3014613_-	paraquat-inducible protein B	NA	NA	NA	NA
SQI16763.1\|3014617_3015871_-	paraquat-inducible protein A	NA	NA	NA	NA
SQI16764.1\|3015885_3017793_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
SQI16765.1\|3017805_3019914_-	23S rRNA (guanine-N-2-) -methyl transferase rlmL	NA	NA	NA	NA
SQI16766.1\|3020012_3021122_+	Flavodoxin reductases (ferredoxin-NADPHreductases) family 1	NA	NA	NA	NA
SQI16767.1\|3021118_3021661_-	Z-ring-associated protein C	NA	NA	NA	NA
SQI16768.1\|3021826_3022837_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
SQI16769.1\|3023044_3025657_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
SQI16770.1\|3026020_3026290_+	Gifsy-2 prophage MsgA	S4TNM0	Salmonella_phage	3.9e-42	98.9
SQI16771.1\|3026496_3027627_-	Uncharacterised protein	S4TSP4	Salmonella_phage	3.5e-201	99.2
SQI16772.1\|3027637_3028597_-	Uncharacterised protein	H6WRW5	Salmonella_phage	9.6e-184	100.0
SQI16773.1\|3028605_3031326_-\|tail	tail protein	S4TTF5	Salmonella_phage	0.0e+00	99.9
SQI16774.1\|3031325_3031724_-	Uncharacterised protein	S4TR39	Salmonella_phage	8.8e-75	100.0
SQI16775.1\|3031730_3032315_-	Uncharacterised protein	S4TND4	Salmonella_phage	2.9e-106	98.5
SQI16776.1\|3032314_3032908_-	Uncharacterised protein	S4TSP7	Salmonella_phage	5.7e-110	99.0
SQI16777.1\|3033259_3033616_-	Uncharacterised protein	S4TNM6	Salmonella_phage	1.1e-57	100.0
SQI16778.1\|3033661_3036871_-\|tail	tail length tape measure protein	K7PKG1	Enterobacteria_phage	2.1e-299	65.6
SQI16779.1\|3036984_3037440_-	Uncharacterised protein	A0A0S2SY43	Pseudomonas_phage	8.1e-08	40.8
SQI16780.1\|3037493_3037784_-\|tail	phage tail protein	S4TND7	Salmonella_phage	1.6e-46	100.0
SQI16781.1\|3037795_3038167_-\|tail	phage tail protein	S4TSQ0	Salmonella_phage	3.4e-60	92.6
SQI16782.1\|3038194_3038899_-\|tail	tail protein	K7PHL2	Enterobacterial_phage	9.7e-93	74.4
SQI16783.1\|3038956_3039304_-	Protein of uncharacterised function (DUF3168)	S4TTG3	Salmonella_phage	3.1e-44	77.0
SQI16784.1\|3039300_3039750_-	phage protein, HK97 gp10 family	S4TR46	Salmonella_phage	2.1e-72	95.3
SQI16785.1\|3039746_3040085_-\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	70.5
SQI16786.1\|3040094_3040421_-	phage protein	K7PKT4	Enterobacteria_phage	5.2e-49	85.2
SQI16787.1\|3040420_3040726_-	Uncharacterised protein	K7PHI6	Enterobacteria_phage	3.4e-10	66.0
SQI16788.1\|3040769_3041987_-\|capsid	capsid protein	K7PM57	Enterobacteria_phage	5.8e-202	89.6
SQI16789.1\|3041996_3042845_-	peptidase	K7PH05	Enterobacteria_phage	1.7e-131	87.9
SQI16790.1\|3042858_3044163_-	histone H1	K7PJU5	Enterobacteria_phage	6.2e-218	85.9
SQI16791.1\|3044162_3045905_-\|terminase	phage terminase, large subunit	A0A0U2C138	Paracoccus_phage	3.7e-141	44.9
SQI16792.1\|3045858_3046323_-\|terminase	terminase	Q9B019	Phage_GMSE-1	1.3e-48	62.1
SQI16793.1\|3046455_3046833_-	Gp74	K7P7P6	Enterobacteria_phage	7.4e-47	73.9
SQI16794.1\|3046867_3047245_-	hypothetical prophage protein	Q6UAR9	Klebsiella_phage	1.2e-41	66.1
SQI16795.1\|3047287_3047827_-	protein gp55	A0A291LBG9	Klebsiella_phage	3.7e-07	46.6
SQI16796.1\|3047823_3048450_-	Phage endolysin	Q858F0	Salmonella_phage	7.1e-95	80.7
SQI16797.1\|3048452_3048800_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	9.8e-46	80.4
SQI16798.1\|3048994_3049684_-	Gifsy-1 prophage RegQ	I6PDF8	Cronobacter_phage	2.4e-59	51.9
SQI16799.1\|3049680_3049821_-	DNA breaking-rejoining protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
SQI16800.1\|3049817_3050429_-	bacteriophage Lambda NinG protein	A0A0M4RU10	Salmonella_phage	4.2e-92	98.0
SQI16801.1\|3050431_3050638_-	Phage protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
SQI16802.1\|3050637_3051240_-	bacteriophage protein	S4TTI0	Salmonella_phage	2.6e-110	100.0
SQI16803.1\|3051639_3051873_-	Gifsy-1 prophage DinI	H6WRY5	Salmonella_phage	5.6e-37	100.0
SQI16804.1\|3052028_3052295_-	bacteriophage protein	H6WRY4	Salmonella_phage	2.6e-46	100.0
SQI16805.1\|3052393_3053224_-	Eaa protein	A0A220NQT9	Salmonella_phage	5.0e-72	82.4
SQI16806.1\|3053237_3053885_-	replication protein O of prophage CP-933X	G8C7U6	Escherichia_phage	4.3e-55	49.7
SQI16807.1\|3053929_3054766_-	replication protein O	K7PGT1	Enterobacteria_phage	4.9e-51	51.5
SQI16808.1\|3054857_3055178_-	Gifsy-1 prophage cI protein	H6WRX6	Salmonella_phage	1.3e-52	100.0
SQI16809.1\|3055197_3055425_-	phage regulatory protein	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
SQI16810.1\|3055438_3055906_+	DNA-binding protein	K7PHG0	Enterobacteria_phage	2.7e-67	85.8
SQI16811.1\|3055975_3057037_+	bacteriophage protein	NA	NA	NA	NA
SQI16812.1\|3057014_3057386_+	phage associated protein	Q6SE87	Lactobacillus_prophage	1.5e-31	50.0
SQI16813.1\|3057412_3057619_-	bacteriophage protein	K7P7I0	Enterobacteria_phage	1.6e-16	67.6
SQI16814.1\|3057906_3057996_+	Uncharacterised protein	NA	NA	NA	NA
SQI16815.1\|3057992_3058193_+	Uncharacterised protein	NA	NA	NA	NA
SQI16816.1\|3058192_3058390_+	putative secreted protein	NA	NA	NA	NA
SQI16817.1\|3058400_3058673_+	Uncharacterised protein	S4TU79	Salmonella_phage	8.0e-27	61.1
SQI16818.1\|3058756_3059053_+	Host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	6.8e-48	99.0
SQI16819.1\|3059058_3059844_+	Recombinational DNA repair protein RecT (prophage associated)	A0A0M4RD39	Salmonella_phage	8.2e-149	98.9
SQI16820.1\|3059840_3060521_+	Integration, recombination (Phage or Prophage)	A0A0M3ULE0	Salmonella_phage	4.3e-130	97.3
SQI16821.1\|3060517_3061387_+	putative DNA methylase	A0A0M4R347	Salmonella_phage	2.2e-158	94.8
SQI16822.1\|3061389_3061632_+	putative bacteriophage protein	S4TR31	Salmonella_phage	4.4e-37	98.7
SQI16823.1\|3061672_3061921_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
SQI16824.1\|3061965_3063258_+	Integrase	S4TSP2	Salmonella_phage	1.7e-252	99.8

DBSCAN-SWA_9

3546822 : 3606059

Bacillus_phage(25.0%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI17263.1\|3546822_3547740_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
SQI17264.1\|3547736_3548189_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
SQI17265.1\|3548189_3548606_-	copper efflux regulator	NA	NA	NA	NA
SQI17266.1\|3548715_3551217_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	1.1e-111	37.1
SQI17267.1\|3551370_3552198_+	Secreted protein	NA	NA	NA	NA
SQI17268.1\|3553279_3553759_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
SQI17269.1\|3553875_3555528_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
SQI17270.1\|3555700_3556921_+	fosmidomycin resistance protein	NA	NA	NA	NA
SQI17271.1\|3557135_3558812_+	transport protein	NA	NA	NA	NA
SQI17272.1\|3558860_3560210_-	inosine/guanosine kinase	NA	NA	NA	NA
SQI17273.1\|3560317_3561289_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	6.6e-15	27.4
SQI17274.1\|3561285_3562248_-	ferrochelatase	NA	NA	NA	NA
SQI17275.1\|3562476_3563121_-	adenylate kinase	NA	NA	NA	NA
SQI17276.1\|3563478_3565353_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.7e-115	36.9
SQI17277.1\|3565463_3566069_-	recombination protein RecR	NA	NA	NA	NA
SQI17278.1\|3566068_3566398_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQI17279.1\|3568485_3569037_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
SQI17280.1\|3569189_3569567_-	Inner membrane protein YbaN	NA	NA	NA	NA
SQI17281.1\|3569647_3570163_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
SQI17282.1\|3570176_3570344_+	Putative inner membrane protein	NA	NA	NA	NA
SQI17283.1\|3570413_3571337_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	1.1e-62	51.7
SQI17284.1\|3571378_3574741_-	integral membrane protein AefA	NA	NA	NA	NA
SQI17285.1\|3574859_3575513_-	potential acrAB operon repressor	NA	NA	NA	NA
SQI17286.1\|3575654_3576848_+	acriflavin resistance protein A	NA	NA	NA	NA
SQI17287.1\|3576870_3580020_+	acriflavin resistance protein B	NA	NA	NA	NA
SQI17288.1\|3580515_3580890_+	Hha toxicity attenuator	NA	NA	NA	NA
SQI17289.1\|3580917_3581136_+	hemolysin expression modulating protein	NA	NA	NA	NA
SQI17290.1\|3581314_3581866_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQI17291.1\|3581983_3582454_+	Putative inner membrane protein	NA	NA	NA	NA
SQI17292.1\|3582655_3582916_-	50S ribosomal protein L31	NA	NA	NA	NA
SQI17293.1\|3583140_3584691_+	Uncharacterized protein ylaB	NA	NA	NA	NA
SQI17294.1\|3584999_3585311_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
SQI17295.1\|3585343_3585913_-	lipoprotein	NA	NA	NA	NA
SQI17296.1\|3586127_3586988_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQI17297.1\|3587087_3588374_-	ammonium transporter	NA	NA	NA	NA
SQI17298.1\|3588405_3588744_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQI17299.1\|3588956_3590738_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	2.4e-39	26.7
SQI17300.1\|3590730_3592503_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	3.6e-51	29.8
SQI17301.1\|3592543_3593002_-	transcriptional regulator	NA	NA	NA	NA
SQI17302.1\|3593114_3594170_+	lyase	NA	NA	NA	NA
SQI17303.1\|3594219_3595038_-	HMP-PP phosphatase	NA	NA	NA	NA
SQI17304.1\|3595137_3596838_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQI17305.1\|3596902_3597598_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.2e-87	68.4
SQI17306.1\|3597703_3598102_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
SQI17307.1\|3598205_3598580_-	competence protein ComEA	NA	NA	NA	NA
SQI17308.1\|3598729_3600601_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQI17309.1\|3600891_3601164_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
SQI17310.1\|3601372_3603727_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5
SQI17311.1\|3603912_3605184_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-131	56.5
SQI17312.1\|3605435_3606059_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

DBSCAN-SWA_10

4460568 : 4473159

uncultured_Caudovirales_phage(55.56%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI18088.1\|4460568_4461603_-	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.4e-110	57.9
SQI18089.1\|4461652_4462933_-	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	5.8e-144	60.0
SQI18090.1\|4462968_4463409_-	umuDC operon protein-like protein	A0A1W6JNS2	Morganella_phage	3.6e-29	53.3
SQI18091.1\|4463602_4464502_-	LysR family transcriptional regulator	NA	NA	NA	NA
SQI18092.1\|4464600_4465128_+	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	7.2e-16	37.1
SQI18093.1\|4465124_4466357_+	MFS transporter	NA	NA	NA	NA
SQI18094.1\|4466405_4466741_+	ArsR family transcriptional regulator	NA	NA	NA	NA
SQI18095.1\|4466737_4467460_+	NADPH-dependent FMN reductase	A0A2H4J5V6	uncultured_Caudovirales_phage	4.8e-95	71.3
SQI18096.1\|4467516_4467945_-	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	6.2e-50	70.0
SQI18097.1\|4467994_4469278_-	arylsulfatase	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	75.1
SQI18098.1\|4469374_4469728_-	ArsR family transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	7.7e-22	58.5
SQI18099.1\|4469990_4470449_-	Zn(II)-responsive regulator	NA	NA	NA	NA
SQI18100.1\|4470528_4473159_+	heavy metal-transporting ATPase	E4ZFI9	Streptococcus_phage	8.6e-134	45.2

DBSCAN-SWA_11

4624984 : 4671885

Burkholderia_phage(38.1%)

tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI18237.1\|4624984_4625983_-\|tRNA	tRNA dihydrouridine synthase A	NA	NA	NA	NA
SQI18238.1\|4626070_4627381_-	conjugative transfer protein	NA	NA	NA	NA
SQI18239.1\|4627627_4628143_+	zinc uptake regulation protein	NA	NA	NA	NA
SQI18240.1\|4628242_4628455_-	stress-response protein	NA	NA	NA	NA
SQI18241.1\|4628473_4628602_-	putative cytoplasmic protein	NA	NA	NA	NA
SQI18242.1\|4628583_4629909_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA
SQI18243.1\|4630087_4630696_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
SQI18244.1\|4630804_4631173_-	diacylglycerol kinase	NA	NA	NA	NA
SQI18245.1\|4631343_4633764_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
SQI18246.1\|4633862_4634735_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
SQI18247.1\|4634748_4635246_-	chorismate lyase	NA	NA	NA	NA
SQI18248.1\|4635426_4636344_-	maltose operon periplasmic protein	NA	NA	NA	NA
SQI18249.1\|4636507_4637866_-	maltoporin	NA	NA	NA	NA
SQI18250.1\|4637954_4639064_-	maltose/maltodextrin transport ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
SQI18251.1\|4639425_4640616_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA
SQI18252.1\|4640747_4642292_+	maltose transport inner membrane protein	NA	NA	NA	NA
SQI18253.1\|4642306_4643197_+	maltose transport inner membrane protein	NA	NA	NA	NA
SQI18254.1\|4643362_4643773_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
SQI18255.1\|4643915_4646012_-	lipoprotein	NA	NA	NA	NA
SQI18256.1\|4646011_4646749_-	putative lipoprotein	NA	NA	NA	NA
SQI18257.1\|4646745_4647384_-	outer membrane lipoprotein	NA	NA	NA	NA
SQI18258.1\|4647447_4647693_-	YjbE secreted protein	NA	NA	NA	NA
SQI18259.1\|4648133_4649783_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
SQI18260.1\|4650127_4651477_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA
SQI18261.1\|4651607_4651955_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
SQI18262.1\|4652530_4652818_+	membrane protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
SQI18263.1\|4652853_4653426_+	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	6.8e-60	59.4
SQI18264.1\|4653438_4653753_+	membrane protein	Q6QIC4	Burkholderia_phage	8.3e-20	48.2
SQI18265.1\|4653912_4654368_+	putative cytoplasmic protein	NA	NA	NA	NA
SQI18266.1\|4654364_4654562_+	gp12	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
SQI18267.1\|4654551_4655979_+\|tail	tail protein	A4JWK5	Burkholderia_virus	4.0e-194	70.9
SQI18268.1\|4655978_4656503_+\|tail	tail protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
SQI18269.1\|4656554_4656872_+	Uncharacterised protein	NA	NA	NA	NA
SQI18270.1\|4657056_4659411_+\|tail	tail protein	A4JWL0	Burkholderia_virus	3.6e-67	30.8
SQI18271.1\|4659410_4660364_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
SQI18272.1\|4660363_4660573_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
SQI18273.1\|4660560_4661604_+	gp21	A4JWL3	Burkholderia_virus	8.5e-77	45.9
SQI18274.1\|4661613_4662336_+\|plate	baseplate protein	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
SQI18275.1\|4663021_4663951_+	bactoprenol glucosyl transferase	S5FKN0	Shigella_phage	1.4e-150	84.1
SQI18276.1\|4663950_4665498_+	membrane protein	B9UDL6	Salmonella_phage	3.8e-49	30.6
SQI18277.1\|4665661_4666021_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	6.2e-35	63.3
SQI18278.1\|4666011_4667127_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.7
SQI18279.1\|4667119_4667752_+\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	6.6e-24	56.4
SQI18280.1\|4667754_4669356_+\|tail	tail protein	A0A0M3ULF6	Salmonella_phage	2.2e-52	52.7
SQI18281.1\|4669360_4669966_+	putative cytoplasmic protein	NA	NA	NA	NA
SQI18282.1\|4669962_4670418_+	cytoplasmic protein	NA	NA	NA	NA
SQI18283.1\|4671156_4671885_+	cytoplasmic protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483465

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection