CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483467	Providencia alcalifaciens strain NCTC10286 genome assembly, chromosome: 1	2 crisprs	WYL,DEDDh,DinG,cas3,csa3	0	3	15	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483467_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483467_2

2430241-2430335

Orphan

Consensus_repeat	Method
AGCCAACAACGCTACAGCGCGAAGTATGAAGAAT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LS483467_2

>merge|LS483467|2|2430241-2430335|CRISPRCasFinder
AGCCAACAACGCTACAGCGCGAAGTATGAAGAATTGCTTTCCCTAAATATTTCAGTGCTGTAGCCAACAACGCTACAGCACGAAGTATGAAGAAT

>LS483467|2|2|2430241-2430335|CRISPRCasFinder
AGCCAACAACGCTACAGCGCGAAGTATGAAGAAT	TGCTTTCCCTAAATATTTCAGTGCTGT
AGCCAACAACGCTACAGCACGAAGTATGAAGAAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483467.1\|SQI38191.1\|2425947_2426280_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|180070
LS483467.1\|SQI38187.1\|2420399_2420984_+\|Maf-like-protein-yhdE	unknown	unknown	gnl\|CDD\|234855
LS483467.1\|SQI38192.1\|2426698_2428138_+\|Exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
LS483467.1\|SQI38196.1\|2431049_2431721_-\|Putrescine-importer-PuuP	unknown	unknown	gnl\|CDD\|223605
LS483467.1\|SQI38186.1\|2419732_2420257_-\|Uncharacterized-ACR,-COG1399	unknown	unknown	gnl\|CDD\|236878
LS483467.1\|SQI38201.1\|2436962_2437520_-\|CysJI-operon-transcriptional-activator	unknown	unknown	gnl\|CDD\|182768
LS483467.1\|SQI38198.1\|2432245_2432803_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483467.1\|SQI38197.1\|2431710_2431920_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483467.1\|SQI38202.1\|2437501_2437825_-\|HTH-type-transcriptional-activator-CmpR	unknown	unknown	gnl\|CDD\|182768
LS483467.1\|SQI38188.1\|2421032_2421989_-\|Ribosomal-large-subunit-pseudouridine-synthase-C	unknown	unknown	gnl\|CDD\|182909
LS483467.1\|SQI38204.1\|2439383_2440229_+\|Endonuclease-4	unknown	unknown	gnl\|CDD\|179214
LS483467.1\|SQI38185.1\|2418496_2419507_-\|Phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|235414
LS483467.1\|SQI38193.1\|2428198_2429344_-\|D-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|236872
LS483467.1\|SQI38195.1\|2430339_2430957_-\|Low-affinity-putrescine-importer-PlaP	unknown	unknown	gnl\|CDD\|223605
LS483467.1\|SQI38194.1\|2429316_2429925_-\|D-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|236872
LS483467.1\|SQI38200.1\|2435332_2436820_-\|Lysine-specific-permease	unknown	unknown	gnl\|CDD\|182767
LS483467.1\|SQI38199.1\|2432969_2434949_-\|Colicin-I-receptor-precursor	unknown	unknown	gnl\|CDD\|184104
LS483467.1\|SQI38203.1\|2438016_2439096_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|129781
LS483467.1\|SQI38190.1\|2422882_2425798_+\|Ribonuclease-E	unknown	unknown	gnl\|CDD\|236766
LS483467.1\|SQI38189.1\|2422607_2422889_+\|Ribonuclease-E	unknown	unknown	gnl\|CDD\|236766

Protein	Function_ID	Function_description	E-value
LS483467.1\|SQI38191.1\|2425947_2426280_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	2.065e-55
LS483467.1\|SQI38187.1\|2420399_2420984_+\|Maf-like-protein-yhdE	gnl\|CDD\|234855	PRK00884, PRK00884, Maf-like protein; Reviewed.	7.27718e-112
LS483467.1\|SQI38192.1\|2426698_2428138_+\|Exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
LS483467.1\|SQI38196.1\|2431049_2431721_-\|Putrescine-importer-PuuP	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	8.59897e-17
LS483467.1\|SQI38186.1\|2419732_2420257_-\|Uncharacterized-ACR,-COG1399	gnl\|CDD\|236878	PRK11193, PRK11193, 23S rRNA accumulation protein YceD.	3.90479e-108
LS483467.1\|SQI38201.1\|2436962_2437520_-\|CysJI-operon-transcriptional-activator	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	3.8194e-116
LS483467.1\|SQI38202.1\|2437501_2437825_-\|HTH-type-transcriptional-activator-CmpR	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	2.02597e-59
LS483467.1\|SQI38188.1\|2421032_2421989_-\|Ribosomal-large-subunit-pseudouridine-synthase-C	gnl\|CDD\|182909	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC.	0
LS483467.1\|SQI38204.1\|2439383_2440229_+\|Endonuclease-4	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	2.46894e-172
LS483467.1\|SQI38185.1\|2418496_2419507_-\|Phosphate-acyltransferase	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	3.13162e-178
LS483467.1\|SQI38193.1\|2428198_2429344_-\|D-lactate-dehydrogenase	gnl\|CDD\|236872	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.	0
LS483467.1\|SQI38195.1\|2430339_2430957_-\|Low-affinity-putrescine-importer-PlaP	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	8.57592e-10
LS483467.1\|SQI38194.1\|2429316_2429925_-\|D-lactate-dehydrogenase	gnl\|CDD\|236872	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.	7.68815e-134
LS483467.1\|SQI38200.1\|2435332_2436820_-\|Lysine-specific-permease	gnl\|CDD\|182767	PRK10836, PRK10836, lysine transporter; Provisional.	0
LS483467.1\|SQI38199.1\|2432969_2434949_-\|Colicin-I-receptor-precursor	gnl\|CDD\|184104	PRK13513, PRK13513, ligand-gated channel protein.	0
LS483467.1\|SQI38203.1\|2438016_2439096_+\|Uncharacterised-protein	gnl\|CDD\|129781	TIGR00698, UPF0324_membrane_protein_HI_1643, conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa. [Hypothetical proteins, Conserved].	5.50757e-115
LS483467.1\|SQI38190.1\|2422882_2425798_+\|Ribonuclease-E	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0
LS483467.1\|SQI38189.1\|2422607_2422889_+\|Ribonuclease-E	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	3.5957e-46

>LS483467.1|SQI38194.1|2429316_2429925_-|D-lactate-dehydrogenase
MNDVKNPENQRLLLTLRNIVGKKNILTEPHKTERYRKGFRSGVGDAIAVVFPTTLLEQWYVFKACVEADRVVIMQAANTGLTEGSTPSGYDYDRDIVIISTLRLNQIQVLPEFNQVVAMPGSTLYDLEKILKPLGREPHSLIGSSCIGASVVGGICNSSGGSLVRRGPAYTELALYGRVNEDGTVELVNHLGSHWVIHQKRS
>LS483467.1|SQI38193.1|2428198_2429344_-|D-lactate-dehydrogenase
MGDTPEEILTNLQNRRYSSEDVESSEKLASDHEYATRVRDVDADTPSRFNADERRLFEASGCAGKLAVFAVRLDTFPADKATQVFYIGSNNPDVLEDIRRHILSEFENLPVAGEYMHRGCFDIAEIYGKDTFLMIDKFGTDKMPTFFTIKGRMDAVLNKVPLLPSNLIDRTMQLLSKLWPSHLPPRMKQFRDKYEHHLMLKMAGDGIDEAKVWLKSFFATADGGYFECTPEEGAKAFLHRFAAAGSAVRYHAVHNKDVEDVLPLDIALRRNDRDWFEKLPPEIENLIVHKLYCGHFMCHVMHQDYVLKKGVDPKELKQKMLELLDARGAQYPAEHNVGHLYKAPEQLKSFYKESDPTNTMNPGLGKTTKRKHWEGDCGCDH
>LS483467.1|SQI38192.1|2426698_2428138_+|Exodeoxyribonuclease-I
MDLILKNNHNQPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIGEPEVFYCKPTDDYLPQPEAVMITGITPQIAMANGVNEAEFAKRIHQAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVSHENAHDAMSDVLATINMAKLLKQAQPRMFDYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYVSLVTPLAWHPENKNAVIMCDLSGDMSPLLTLSADELRERLYTPKAELGDDLPVPIKLVHINKCPILAPINTLRTVDAERTGLDRDLCMRNLELLRKNPDVRNKLIELFSVGQQFEESNDVDSQIYNGFFSPSDRSTMDIIRETAPQNLPALDLSFEDKRMKELFFRYKARNYPSTLSYDEQQRWLQHRRDYFTEARLTDYLQQIQLLMGVHHEDEKRCQQLKALVNYAYELAS
>LS483467.1|SQI38191.1|2425947_2426280_-|Uncharacterized-protein-conserved-in-bacteria
MENANKPTFQNVLEFVRMFRRKNKIRREITDNEKKIRDNQKRVLLLDNLSEYIKPGMSIEDIQAIIANMRSDYDDRVDDYIIKNAELSKERREISKKLKEMGDLPRIDVK
>LS483467.1|SQI38190.1|2422882_2425798_+|Ribonuclease-E
MLKEGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSCLEIPEGMGLIVRTAGVGKSAESLQQDLLYRLRHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMARNHIEAIGRGDFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALTAIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVRQDRARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRQAVTEIEQRQRNVRVVIVPNDQMQTPHFHVIRIRKGEEVQTLSYNLAQYHETETLNQGEEPTSERKAPEQPAISAFALQEPVEVPALKQKESPSKAPARPKTDEQPNVGLFSKIAAFFKGLFAEEEKVVEQPAQKARPNNNDRRRNNDRRRNNDRRNNNRRDRDDNYENRDNRENRDNRDNRNNRNAQSEDAANRNKGRNNKNTNQVDEQTTDTANRDNQQRREQRAERRRRQDEKRQQQTAKTQQDSQQAAVDNTVVEKDEEEQRPVAPRRQRRQLTQKIRVTDNEQTTETAIVAEMPATPMAALPSTVNVEKKHDNVTLNEDDNLAVNSEQQDDDEKQDTIIPRRSRRSPRHLRVSGQRRRRYRDERHLNKSPMPLAAAVASPELASGKVFIRYPVVQPQQESMAIMTNEEMLEQQNTVQAPAAIQAPVEQVEVKSEHIETPVVTETVVETPKVETETHVVAESIETIAVESNTVLESVIADVTETEKTDVVQTVVDTIVETPVVEEIKEISEPAVADVVVETKVATATVVETTVVDAVSTSNALSLHKCHAYSPMTKAPAPAVMASDFEIKEYQREPSTFESKGAGGHVAANVATSEMAKPASV
>LS483467.1|SQI38189.1|2422607_2422889_+|Ribonuclease-E
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAALLIMALKDTVSCLSKRSLANTSQAIITLKVVRTSKMC
>LS483467.1|SQI38188.1|2421032_2421989_-|Ribosomal-large-subunit-pseudouridine-synthase-C
MKTENQVQFIDISDDEAGQRIDNFLLSKLKGVPKSMIYRIIRKGEVRVNKGRIKPEYKLLEGDQVRVPPVRVAERETAPVSAKLDKVAALADCILYEDESILVINKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGILLVAKKRSALRALHEQLRLKQMQKDYLALVRGNWQSHTKVVQAPLLKNILQSGERIVRVSSEGKPSETRFKVEERFENATLVKASPVTGRTHQIRVHTLHAGHPIAFDDRYGDKQFDSQLADTGLKRLFLHAYALKFTHPKSGEEMRVVAPLHNDLNQCLKVLRAKKAQ
>LS483467.1|SQI38187.1|2420399_2420984_+|Maf-like-protein-yhdE
MKSIILASTSEYRQALLKKLGIPFLAAAPNIDETPILQESAQALVIRLSHEKAKALSQQYPQHLIIGSDQVCVIDDKIVGKPHNFENAFKQLKAASGHRVTFYTGLCLLDSTTGTFNVQCEPFDVYFRQLTDEEITQYLHKDEPYQCAGSFKSEGLGISLFDKLSGRDPNTLIGLPTILLLEMLRQHDVNPLLD
>LS483467.1|SQI38186.1|2419732_2420257_-|Uncharacterized-ACR,-COG1399
MQKVKLPLTIDAQRAAQKNLDYVGSYTPEQVARIAESVVSVDSDVESKLSFKIDNQRLTVIEGHSEVDVTLQCQRCGKNFKHHVYVSYCFSPVVNDEKAEALPEQYEPVYVDEFGEINLLGMLEDEIILSLPVVPVHDSEHCEVSEADMVYGELPPEVEKPNPFAVLASLKKST
>LS483467.1|SQI38185.1|2418496_2419507_-|Phosphate-acyltransferase
MGGDVGPRVTVPAALQALASNPALKLLLVGQPEAIHPLLAQQSAEQLSRIEIIPAENVIASDAKPSHAIRQSKGTSMRVALELVKTGQAQACVSAGNTGALMGLAKLMLKSIEGIERPALMTILPNQKKGKTVVLDLGANVNCSSEMLVQFAVMGSVMAEEVANISQPKVALLNIGEEESKGLDNIREAAALLKETASINYIGYVEGNELLTGKTDVLVCDGFAGNVSLKTMEGVIRVILSLLKSAGEENKKSSWFMQLAKKWLKKRLMKRFGDMNPDQYNGATLLGLKGIVIKSHGAANESAFKAAIDRAVQAIERQVPERITARLNIVLPRSDQ
>LS483467.1|SQI38195.1|2430339_2430957_-|Low-affinity-putrescine-importer-PlaP
MIFITVSFFLQQFFPDVSRFANINETQPDIMRFVAGSFFQAIILVFSCVTVLASGMAAHAGSARLMYVMGRDGVFPEKIFGYVSPTWRTPAYNVLLVGFLALGAIWFEMDFATALINFGALIAFTFVNISVISQFFIRERRIKGFKNIMNYLILPIIGTLTVCVLWLNIEEDSMVYGLIWTAVGLVYMAVLTRMFRRPMPQMSDV
>LS483467.1|SQI38196.1|2431049_2431721_-|Putrescine-importer-PuuP
MQNNSVPLDIGHNQTGANNRVQLAKTLTLVQVVMIGIAYIQPMTIFDTFGMVSDKTGGHVPTSYIIALAAILFTALSYGKLVKRFPSAGSAYTYAQKSMSPHIGFLVGWTSLLSYIFMPMINILLAKIYLQDIFPNVEPAFFVIGLVILMTAANLRGINVIANLSTVIAIIQIGVMAVFTGLVIHGVSNGEGSGEIWTFNPFANEKTELIPLIAGRRYSVSHS
>LS483467.1|SQI38197.1|2431710_2431920_-|Uncharacterised-protein
MAYFFALAAGPSGRRCRIDDYGANTGFAQTLFHFSSFFSAYRQMQSLPSNCRLSRSTQSKVMGGLYHAK
>LS483467.1|SQI38198.1|2432245_2432803_-|Uncharacterised-protein
MPKLTRYFSACCLSVLLFIGSVSYALAGDPGPYRLVFLDISQSPYQDGQKLLIELRKMERLSSVQREACFMCNGSDDGDSDVEVLYVYSVPVGLSIETLRKAVNGDVAARNSMQLVLGNFKDQYDYGVDGLLIYNHQEGKVTVYTMDNKVGSELQSETKAVKSKLLHSSLDMLLEKSAAKLDRPV
>LS483467.1|SQI38199.1|2432969_2434949_-|Colicin-I-receptor-precursor
MVVFTKRKIAVSIIAAMTTVPAFADDSSDKIFVTTASGYQQKIEDAPASISVVTREQLETKAYRDVTDALKDVPGVLVTGGGSSSDISIRGMDAKYTMILIDGKRVDTRSIRPNSDGAGIEQGWLPPLPAIERIEVVRGPMSSLYGSDAMGGVINIITRRVQQEWTTSLRADTTITERKNSGNTGQGSFYTSGPLVDGLLGVKLQGQYSHRSEDKIIDGFGRQIMTSGGGTLSLTPNEQNAFDLDFKKDNQHRDYREGYTAARGDGSGFSKYDMTHMALTHTGTYDIASTDTYVQYDEAKNPGRKMTAEDLVFRNQSVFLLGDHSVSIGGQYRKEKLKDQSNKLPGNSELDRYSWALFAEDEWLMTNDFALTGGLRMDNDENYGAHWTPRLYGVWHADEQWTIKGGVSTGYKAPSLRESSANWGQATGGNKGNAIIYGNPDLKPEKSITEEIGVIWNNQDNLTAGVTIYNTDFKDKITEIRRCDNSIDTIRDCTLADGEGDTPGKPYRFVSDKANVDKARMQGVEVTFNWGILDNLEFAANYTYTHTEQKSGVNKGKPLSKQPKHMVNTTLTWDTTEDLQTWGRMNFRSETSDYQGRGQQMSKGTPSYALFDLGTSYKLSKNANIVGGVYNVLDRRVDKGTYGAELEGRRYNIGINYNF
>LS483467.1|SQI38200.1|2435332_2436820_-|Lysine-specific-permease
MAEQHTTTSMGGGQKLRRELKARHLAMIAIGGSIGTGLFVASGATVAQAGPGGALLSYAIIGLMVYFLMTSLGELAAYMPVSGSFATYGAKYVDEGFGFALGWNYWYNWAVTIAVDLVAAQLVMTYWFPDTPGWIWSAIFLAIIFLLNYISVKGFGEAEYWFSLIKVTTVVIFIIVGVLMIFGIMNGAENAGWHNWEIGDAPFAGGFSAMIGVAMIVGFSFQGTELIGIAAGESKDPAKNIPRAVRKVFWRILLFYIFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFENAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLAREGKAPKIFAQLSKGGVPRYALLATTVVAGLCFLSSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYIAQGKDLNDLPYRSGFFPVGPIFAFILCLVITLGQNYQAFLEDKIDWVGVTATYIGIPLFLAIWFGYKIVRKTSIVRYKEMSFPSYRENLEK
>LS483467.1|SQI38201.1|2436962_2437520_-|CysJI-operon-transcriptional-activator
MLPEILAGYRHDNPEIPLELFIGNTEEVIKGVMEFRADVGLIEGVCHSPELISKPWLKDELVVFSAPSNPLAKKKVTVRDLKDAPWILRERGSGTRDVLDQLLFAHLPGFQILMELGNSEAIKHAVRFGMGISCLSRRVIAEQLENGTLVELEVEELQLERTLYLIYHRQKHLSNAITNLLAYCN
>LS483467.1|SQI38202.1|2437501_2437825_-|HTH-type-transcriptional-activator-CmpR
MRITLRQLEVFTEVLKSGSTTQASQLLALSQSAVSASLTDLEGQLGVQLFDRVGKRLVTNEHGRLLYPKALALLEQAFEVEQLFKKRWAPFAWRRVLPLGTICCQRF
>LS483467.1|SQI38203.1|2438016_2439096_+|Uncharacterised-protein
MDKTGTKAITQNHSFPILKLIPGIILAGILTAVAIYLGEQSWFMDIGLGALTLAILLGICVGNTIYPAISTSSDAGIKFAKHYFLRAGIILYGFRLTFQQITDVGATGLIIDALTLITTFLLAYWLGKKVFKLDDETTMLIGAGSSICGAAAVMATEPVVKASASKVAVAVSTVVIFGTIGIFVYPWLYQLNAHFGWIPATQESFGIYIGSTVHEVAQVVAAGHTIGPDAENASVIAKMLRVMMLAPFLIILSAFISRKSAANTQDGAQKSKITIPWFAVIFILVAAFNSFNLLPEQLVKHIITLDTILLAMAMVALGLTTHVSAIRQAGIKPLLMAAILFAWLIFGGIVINVAIQSLF
>LS483467.1|SQI38204.1|2439383_2440229_+|Endonuclease-4
MKYVGAHVSASGGVDQAVIRAHEIGATAFALFTKNQRQWKAAPLSDEMIKSFKQNCVKYGYGKHQILPHDSYLINLGHPEFEALEKSRTAFIDEMQRCMQLGIDLLNFHPGSHLKQIEVDDCLARIAESINIALAETEGVIAVIENTAGQGTNLGFDFTHLAKIIERVKDQSRVGVCIDTCHAFAAGYDLRTEEDCEKTFQQFSDIVGFEFLKGMHLNDAKSEFASRVDRHHSLGEGNIGYAPFRYIMKDARFDGIPLILETINPDIWPQEIAWLKSQQNS

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Crispr_ID: LS483467_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483467_3

3652707-3652806

Orphan

Consensus_repeat	Method
AGCCAACAACGCCACAGCGTGAAGTATGACGAGATTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483467_3

>merge|LS483467|3|3652707-3652806|CRISPRCasFinder
AGCCAACAACGCCACAGCGTGAAGTATGACGAGATTAAGTATGTGACGAAGGTTAGCAAGGCCAGCCAACAACGCCACAGCGTGAAGTATGACGAGATTA

>LS483467|3|3|3652707-3652806|CRISPRCasFinder
AGCCAACAACGCCACAGCGTGAAGTATGACGAGATTA	AGTATGTGACGAAGGTTAGCAAGGCC
AGCCAACAACGCCACAGCGTGAAGTATGACGAGATTA

Protein	Signature genes	Signature genes Name	Protein_function
LS483467.1\|SQI41997.1\|3661362_3662145_-\|Hydrogenase-3-component-G	unknown	unknown	gnl\|CDD\|225799
LS483467.1\|SQI41983.1\|3646275_3647256_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270265
LS483467.1\|SQI41993.1\|3656229_3658023_-\|Probable-NAD-dependent-malic-enzyme-2	unknown	unknown	gnl\|CDD\|237414
LS483467.1\|SQI41979.1\|3640917_3643362_+\|Maltodextrin-phosphorylase	unknown	unknown	gnl\|CDD\|184948
LS483467.1\|SQI42000.1\|3662706_3663900_-\|Hydrogenase-4-component-G	unknown	unknown	gnl\|CDD\|225800
LS483467.1\|SQI41999.1\|3662187_3662694_-\|NAD(P)H-quinone-oxidoreductase-subunit-I	unknown	unknown	gnl\|CDD\|181301
LS483467.1\|SQI41981.1\|3644114_3644498_-\|Predicted-enzyme-related-to-lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|319925
LS483467.1\|SQI41984.1\|3647270_3648023_-\|Spermidine/putrescine-import-ATP-binding-protein-PotA	unknown	unknown	gnl\|CDD\|213226
LS483467.1\|SQI41982.1\|3644559_3646215_-\|Sulfate-transport-system-permease-protein-CysW	unknown	unknown	gnl\|CDD\|224099
LS483467.1\|SQI41987.1\|3650688_3652377_+\|Formate-dehydrogenase-H	unknown	unknown	gnl\|CDD\|130652
LS483467.1\|SQI41985.1\|3648206_3649757_-\|2-acyl-glycerophospho-ethanolamine-acyltransferase	unknown	unknown	gnl\|CDD\|153248
LS483467.1\|SQI41995.1\|3658064_3659513_-\|Fumarate-hydratase-class-II	unknown	unknown	gnl\|CDD\|234779
LS483467.1\|SQI41992.1\|3655829_3656102_+\|Hydrogenase-isoenzymes-formation-protein-hypC	unknown	unknown	gnl\|CDD\|182438
LS483467.1\|SQI41980.1\|3643468_3644026_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483467.1\|SQI41996.1\|3660392_3661370_-\|Hydrogenase-3-maturation-protease	unknown	unknown	gnl\|CDD\|236925
LS483467.1\|SQI41990.1\|3655469_3655811_+\|hydrogenase-nickel-incorporation-protein-HybF	unknown	unknown	gnl\|CDD\|183485
LS483467.1\|SQI41989.1\|3654910_3655459_+\|Electron-transport-protein-hydN	unknown	unknown	gnl\|CDD\|182382
LS483467.1\|SQI42002.1\|3663838_3664441_-\|Hydrogenase-3-component-E	unknown	unknown	gnl\|CDD\|225801
LS483467.1\|SQI41986.1\|3649753_3649915_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483467.1\|SQI41978.1\|3640421_3640925_+\|Glycogen-synthase	unknown	unknown	gnl\|CDD\|234809

Protein	Function_ID	Function_description	E-value
LS483467.1\|SQI42000.1\|3662706_3663900_-\|Hydrogenase-4-component-G	gnl\|CDD\|225800	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion].	0
LS483467.1\|SQI41983.1\|3646275_3647256_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270265	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic domain (Fbp) has high affinity for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.20218e-102
LS483467.1\|SQI41993.1\|3656229_3658023_-\|Probable-NAD-dependent-malic-enzyme-2	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
LS483467.1\|SQI41979.1\|3640917_3643362_+\|Maltodextrin-phosphorylase	gnl\|CDD\|184948	PRK14986, PRK14986, glycogen phosphorylase; Provisional.	0
LS483467.1\|SQI41999.1\|3662187_3662694_-\|NAD(P)H-quinone-oxidoreductase-subunit-I	gnl\|CDD\|181301	PRK08222, PRK08222, hydrogenase 4 subunit H; Validated.	9.39718e-103
LS483467.1\|SQI41981.1\|3644114_3644498_-\|Predicted-enzyme-related-to-lactoylglutathione-lyase	gnl\|CDD\|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.51376e-39
LS483467.1\|SQI41984.1\|3647270_3648023_-\|Spermidine/putrescine-import-ATP-binding-protein-PotA	gnl\|CDD\|213226	cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.3684e-106
LS483467.1\|SQI41982.1\|3644559_3646215_-\|Sulfate-transport-system-permease-protein-CysW	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.3983e-72
LS483467.1\|SQI41987.1\|3650688_3652377_+\|Formate-dehydrogenase-H	gnl\|CDD\|130652	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type. This model describes a subset of formate dehydrogenase alpha chains found mainly archaea but also in alpha and gamma proteobacteria and a small number of gram positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized). This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.	0
LS483467.1\|SQI41985.1\|3648206_3649757_-\|2-acyl-glycerophospho-ethanolamine-acyltransferase	gnl\|CDD\|153248	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.	1.63638e-77
LS483467.1\|SQI41992.1\|3655829_3656102_+\|Hydrogenase-isoenzymes-formation-protein-hypC	gnl\|CDD\|182438	PRK10413, PRK10413, hydrogenase maturation factor HybG.	1.77098e-37
LS483467.1\|SQI41995.1\|3658064_3659513_-\|Fumarate-hydratase-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
LS483467.1\|SQI41996.1\|3660392_3661370_-\|Hydrogenase-3-maturation-protease	gnl\|CDD\|236925	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional.	4.9797e-89
LS483467.1\|SQI41990.1\|3655469_3655811_+\|hydrogenase-nickel-incorporation-protein-HybF	gnl\|CDD\|183485	PRK12380, PRK12380, hydrogenase/urease nickel incorporation protein.	2.67563e-43
LS483467.1\|SQI41989.1\|3654910_3655459_+\|Electron-transport-protein-hydN	gnl\|CDD\|182382	PRK10330, PRK10330, electron transport protein HydN.	7.3199e-84
LS483467.1\|SQI42002.1\|3663838_3664441_-\|Hydrogenase-3-component-E	gnl\|CDD\|225801	COG3262, HycE, Ni,Fe-hydrogenase III component G [Energy production and conversion].	1.14451e-75
LS483467.1\|SQI41997.1\|3661362_3662145_-\|Hydrogenase-3-component-G	gnl\|CDD\|225799	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion].	2.64943e-81
LS483467.1\|SQI41978.1\|3640421_3640925_+\|Glycogen-synthase	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	1.52883e-69

>LS483467.1|SQI41987.1|3650688_3652377_+|Formate-dehydrogenase-H
MSNSIVEIEDTKCIFVFGYNAADSHPIVARRILKAKEKGAQIIVCDPRYIETARIADIHLPLKNGSNIALLNAFAHVIIEENLYDQAFIDAHTDKFDEYRVLVAPYTPESVEEITGIKAEDIRKTARMYAKAETATILWGMGVTQFYQGVETVQSLTSLALLTGNLGKPHVGVGPVRGQNNVQGACDMGALPNTLPGYQYVSDKAALEKFAKFWGIDAMPDENGIPLSEVPHFIDEGILKAHYVMGEDPLQTEPDLATIRRTFDKLELLIVQDIFMTKTASIADVIFPATSWGEHEGVYTAADRGFQRFYKAVEPVGDVKTDWEIISLMSTAMGYPMHYNNTKEIWDELRELCPIYFGATYEKMAGLAYIQWPCRTLESEGTEYLYEGGNFDTPNGRGQFFTCEWRPPIDQVSAEFPMVLATVREVGHYSCRSMTGNCKALASLADEPGFVQINTADAKALGIKDQELVWVCSRQGKVITRANVSDRPNKGAVYMTYQWWIGACNELVAENLSPITKTPEYKYCAVRVEPIADQHKAEHYVVQEYTGIKRSFARQLKAYSLF
>LS483467.1|SQI41986.1|3649753_3649915_-|Uncharacterised-protein
MFSVDALLESAFPQQTLPAWKRKLLKRLLHEKDFQQLAEDYPHLKGSILLSNL
>LS483467.1|SQI41985.1|3648206_3649757_-|2-acyl-glycerophospho-ethanolamine-acyltransferase
MNDLNVRCELGEGDLENIPSQGPVLFVANHPIGSLDGLAILRAVATVRPDVKIVANQMLSYLEPLQNLFIPVDNVGNRTNRQQVVGMQSHLDNQGALVVFPAGEVSRWGTKGIRDSHWRTGFLRLAAKSRAPIVPVHVQARNSLLFYTTSLVYKPLSALMLVNEMFKQRNNLIKLRIGGRIPFSQWYDGRTNDNELAERFRRHVYLLGKGKAGLFTCEAPIALPEDRIELKKALAACEKLGVTPDGKIIYLYQRQQEERTPILRELGRLREIAFRAVGEGSGKRRDLDSFDDDYYHLILWDEDDLEVVGAYRFVPTEQQLSKKGLEGIYSNSLFHYNQDMMPILAQGIELGRSFIQPTYWGKRGLDYLWLGIGAYLAKYPQYRYLFGPVSISGSMPVAARDLLIAFYRLYFSSELAMAQSRKPYPASLPQVLAQFDGNNYQEDLVKLKSLLSNIGCSIPTLYKQYTELCEPGGVQFIDFGTDPAFNDCIDGLVLVDLSRLKPQRYQRYIAVHQAHK
>LS483467.1|SQI41984.1|3647270_3648023_-|Spermidine/putrescine-import-ATP-binding-protein-PotA
MLNTLSSLNGSSDAFQHASVASTQLALRRPMISIHQLSQVFAHQTVLDGIDLTVMKGTILALLGPSGCGKSTLLKLLAGLLQPSSGEIFLNEKRVASAQHLVPPEQRNLGMVFQDYALWPHMTVFQNVAFPLRMRKVTRQEIEERVNQALERVGLAGFAKRKPADLSGGQQQRVALARAIIAEPEILLFDEPLSNLDVALRCALCDEMAQLLRALEITAVYVTHDPAEAHALAHQIAHMQNGKIDSLTTL
>LS483467.1|SQI41983.1|3646275_3647256_-|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MQKLMLSNHFFMKGIAMSLGLSCALFSVSSQALTVYTAGPGAMAKQLAAGYEKQTGVKVDVFQATTGKVMARLEAEQANPRADVLISASWDTALDLQQKGWLLAYESPNAEKVPAQFKTPYYVAQGISALGIVWNSKSGTPTPKDWADLAQPAFKDKVTMPDPALSGASLDLLLGLQNAKSEAAWTLFSELKANGMVISGPNAQALTPVLQGAKAAVFGAVDYVAYGSIAEGESIEVIFPSSGTAIAPRPMMILKSSKQQEEAKAFIDYVLSPDGQKIVADAWLMPARTDIAGKRPDFSTLKLLPEPTTDSTERSSVLSHFSGIFR
>LS483467.1|SQI41982.1|3644559_3646215_-|Sulfate-transport-system-permease-protein-CysW
MITRRLLPFSVLIALAILVVIPLIFIVLQALFPHFGQGDFSQIFQPIIHLFNEQELASLLQNTFLLGLGVALVSAVIAIPLGAVRGLFNLPFARVWDLLFLIPFLIPPYIAGLSWMLTLQPNGYFQQLFGISPGSALFSLGGMVVIMSLNLFPVLYFAVSRSMAANGNRLADVAQVHGASAWQAFLRVTLPLSLPSIAAGLLLVFTLAIEEYGIPAAIGSPNGIRVLTTDIEQRLADWPIDLPGAASLSLVLASLALLAYTLQRALVSGRNVATNTGKAAALVTRSLGIWRIPAVCLFSFVALCAVGMPLLAMLGTAFSNTVSGGLTFDNLTLRHFSGLLNRHTEALDALLTSVSLATATAILTGVLGFLCAWLVVAQRIRGASLLDGLSLLPIAIPGIVVAVGLILAWNQPFWPVSPYHTWGILLLAYSCLLLPYPVRYCSAALTQISGSLSDAARVHGAGVMRSLRLILFPLVLPSLVAAMMLVFAVASRELVSSLLLAPAGMQTVSIFVWRQFEQGSIGSGMAMACLAVLISLVLMLCAQYIQQRYSR
>LS483467.1|SQI41981.1|3644114_3644498_-|Predicted-enzyme-related-to-lactoylglutathione-lyase
MKFKYAILYVENVEKTLDFYQRAFGFKKSFLHESGDYGELDTGSTTISFSSLALMNQLGKGAVAPNPSAPVFELAFETDDVPKALHQAVNAGAELVQDAQDMPWGQTIGYVHDLNGFLIEICTLVQG
>LS483467.1|SQI41980.1|3643468_3644026_-|Uncharacterised-protein
MQGMNPETVDHYNDIMPMITKLAALLNPHSAENAATDISSFEEELNEWISEDEEGFVESIEEGEVGYLMADLIVRSNMGNSFWIDWKDSESAVGFLDSALECEGLDIQLDFAVKDPKNDLRPDQIFVRANQQLQALGYYLLGLTSGNDAYHEILIPSGIFEPFMDIMEHFDVMVELNDEEVDYSE
>LS483467.1|SQI41979.1|3640917_3643362_+|Maltodextrin-phosphorylase
MNDPFIIKNREQRINALVDSIQTKLKFMIGKDPIIATQHDWLNAISYAIRDLTVDRWLRAIRRSLSQSDRAVAYLSMEYLIGRTLSNTLLNLGMYDDVAGALKKMGFELNAILEEEDDPGLGNGGLGRLAACFLDSLATLKIPSVGFGIRYEYGMFQQNIIDGQQVESTDRWLQYGNAWEFPRYNLSYKVRFAGRLQQEGKVTRWIETEEVLARAYDQIVMGYGCDATNTLRLWSAHATNEMNISKFNQGEYSAAFEDKNFSENVSRVLYPNDSTESGKILRLGQEYFLVSATLQNILDVHYRVHGTLHNLADKIAIHLNDTHPVLAIPELMRLLIDEHEYTWEAAWQMSEKIFSYTNHTLMSEALERWSVELLGRLLPRHLQIIFEINDHFLTKIKQRYPNNPELLTRLSLIDESHGRYVRMAWLAVVGSYRVNGVSQLHSELMTQEIFADFAKIFPKRFCNITNGITPRRWLALCNKPLASLIDETIGEHWREDLTLLSRLQQRTDFPLFIERLKTCKLENKVALASYIANHLNIIVDPHALFDVQIKRIHEYKRQLLNILQVIGRYHRMLRLPEKNWVPRVVIFSGKAASSYVNAKMIIRLINDVAQVINHDARIKNRLKVIFIPNYSVSLAELIIPATDLSEQISLAGTEASGTGNMKFALNGALTIGTLDGANIEIREHVGEENIFIFGHTAKQVEALRAQGYDPRKIYQEHEDLHDVLNSLVSGVFSPNDPNRYYALYDSLINFGDYYQLLADYHSYVQAQDAVDKLYQTPNLWAQKTLCNIANMGYFSSDRTIKEYVEKIWDMKPNP
>LS483467.1|SQI41978.1|3640421_3640925_+|Glycogen-synthase
MAIPIYNTHFEQLARQYPKQVSVLIGYDELHAHKLIAAADVMVVPSRYEPCGLTQLYGLKYGALPLVRHTGGLADTVTDCSLENLADRTATGFVFHDYHGYRSHHGKTTELHDAIRRVFALWNEPTRWKRVRRQGMRMNFSWHASAQKYLALYQSLIAPQVGGSENE
>LS483467.1|SQI41989.1|3654910_3655459_+|Electron-transport-protein-hydN
MNRFIIADPKKCIGCHTCEVACVVSHQEQETGIATVVKDEFFPRIHVLKGYTISTAVICRQCEDAPCANVCPNGAISRKDDFVYVDQSKCIGCKTCVIACPYGTMEVIIRPVAQQTTALNTIPQYRAEAHKCDLCHTREGGPACVEVCPTEALMIVDRNKMDEIIKERRRRAAFEMPADILS
>LS483467.1|SQI41990.1|3655469_3655811_+|hydrogenase-nickel-incorporation-protein-HybF
MHEVALCQSAFEIIEQHAKQNHARRVTGVWLELSAVSCVEESAVHFCFDIICRNTLAQGAQLHILISPAQAQCRDCQHQVKITQFGAGCPHCGSQNLIVDSTSAMQVKQIEIE
>LS483467.1|SQI41992.1|3655829_3656102_+|Hydrogenase-isoenzymes-formation-protein-hypC
MCLGIPGQVVAVGKTPMDCAQVDVCGVKREVNIALVCEGDTESMVGKWVLVHVGFAMSILDEKEARDTLEALMAMEEVEEDVGYFLRGNA
>LS483467.1|SQI41993.1|3656229_3658023_-|Probable-NAD-dependent-malic-enzyme-2
MYNRQAKVVVENNVRKIKTTARGYEVLRDPSLNKGTAFTEEERKALDLNGILPPVVTEDMETQLNRAYHAYRGCHSDLDKHIYMWRLHDNNVTLFYALLQRHMLEMLPVVYDPVVGDAIENYSEIITRPRGIFLSINEPELIEEKLRAFGAEGGDIRLIVTTDAEEILGIGDWGSNGIDISVGKLAVYTAAAGVDPHSVIPVVLDVGTNNEKLLNDPSYVGNRHERIQGKVYDDFVDAYVKAARKLFPNAVMHWEDFGSTNARRILDKYRANFATFNDDVQGTGAIVLSGLLNAVKLSKTPWTEQKVVIFGAGTAGCGIADQIRDQMIRSGLSREEAISRIWLIDLPGLLTTDMVDSLLYFQKDYAKNSQDVANYPRKMVDVSVEAQTRWPDMADILAKQNKAKGIIDLATVVENVKPTILIGTSTTPGAFTQDIVRSMASHVERPIIFPLSNPTLLHEATPQHLIEWTDGKVFVATGAPFDDVVYNGVCYKIGQANNAALYPGLGFGAIVSKATKITDEMIFAAVQAVASQATLGSEGASLLPSNEDLRITSSIVALAVLRMAKSQGVSGVNANDSEVEMVRTQSWWPVYVPVEAI
>LS483467.1|SQI41995.1|3658064_3659513_-|Fumarate-hydratase-class-II
MTDYILNKSIPIGINETGSREEFDSMGKVKVPANRYWGAQTQRSLQHFNIGDDLMPKSVYHAYGYVKKACALVNCEAGRLAQWKKEAIVIAADETIQGRLDEHYPLYVWQTGSGTQSNMNVNEVISNRAIQLLGGTLGTQLPVGPNDDVNMGQSSNDTFPTAMHIAAIFALDEQLIPAIEDLIQLIEKKADSWMSVVKIGRTHLEDAVPLTVGQEWHGWAGQLRDALDDIKRSQQDLYKLAVGGTAVGTGLNAPKGFSKDVADKIAELTQKPFITAPNKFTAQGSLDALVRTHAAIRGLAVALIKIANDMRWLASGPRCGFSELILPSNEPGSSIMPGKVNPTQCEAMVMIGIQVMGNDAAIAISGSQGNFELNAMRPVIINNLLHSIRIISDGCRKFMEYSVEGTELNNTKITEYVDNSVMLVTALSPIIGYQNAAHIAENAIAKNITLKESAIASGKISEEDFNKYVNPIDMTGNGLSGA
>LS483467.1|SQI41996.1|3660392_3661370_-|Hydrogenase-3-maturation-protease
MSESSIETGKVIFWSLRQKFVDSDDDIPEDAQQVMYYSLAIGHHVGMIDCLKTELECPLDGYQAWVNALPEGEARRKLQGLITFGEINIDSTHTNMLALALDDFAKDSDSPYQAWSATLIQLLGEIEQEPAIYLIVKRQPMSDVARQTQPSFSMETESSTENLLLSENPSPVQNLMLAVGNSMMGDDGAGPMLFDLMQQTPIDGWVAINGGSSPESVSHQVRALKPQRLLIVDAADIGLAPGEIRVIDPDDIAEMFIMSTHNLPLNFLIDQLKADVGEIIFLGIQPDLVGFYMPMNDKVIAAVEQVYQALPTWEGLGGFRLFEGE
>LS483467.1|SQI41997.1|3661362_3662145_-|Hydrogenase-3-component-G
MSLPDIPVNHHVSQPIVLDEQVAKLKSTLLKDIKRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRAMRMPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPAATIYGFAVALGLLKQKLVGQDHREADGEKVELLLPSIPLATRVMIEREARRQAGYFQGREISDRFLTLLDGATPSQVKVTMQAWMDEEQDPRLREIVNRLVTVLQQGGINE
>LS483467.1|SQI41999.1|3662187_3662694_-|NAD(P)H-quinone-oxidoreductase-subunit-I
MFKLFKTLRNAGTATVKYPFKPLEVAHGFRGKPEYDPQQCIACGACISACPANALTMETDLESGERRWQLFLGRCIYCARCEEVCPTRAIHLTEEFETAVMNKADLYMKGTFRLQHCRQCGEAFAPKKSVEYAMALLAASGIEEASIEALRPMYETCPSCKQKKQLIE
>LS483467.1|SQI42000.1|3662706_3663900_-|Hydrogenase-4-component-G
MIAKTQSRVVPIGPLHITSDEPGHFRLFVDGERIVDADYRMFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFTHSVAYTTSVENALGIYVPQRAHTIRSVLLEVERLHSHLLNIGLASHFTGFDTGFMQFFRVREKSMTMAELLTGARKTYGTNLIGGVRRDFLKEQRVKTIQLVKEMRQDVTQLVDMLLSTPNMEQRTVGVGRLDPQVARDYSPVGPMIRASGFKRDVRFDHPFADYGNLPKTLFTLDGCDVYSRVMVRIKETLDSLSMIEYALDNMPEGPILTEGFTYQPHKFALGYTEAPRGEDVHWSMLGDNQKLYRWRCRAATYANWPVLRYMLQGNTVSDAPLIIGSLDPCYSCTDRVTLVDVKKRKAKTVAYKELEQYSIERKHSIMK
>LS483467.1|SQI42002.1|3663838_3664441_-|Hydrogenase-3-component-E
MSYQNYTDTLQGVRKGAGYLAKVREKFPHAMLEEEWQTANQVTITVKTEMLPEVVEFLYYGCGGWLPVLWGNDERPLNGQFAVYYALSMEEGEKCWVTVKAYVSPITQEFPSVTPRVPAAVWGEREIRDMYGLRPVGLPDERRLVLPDDWPEDLYPLRKDTMDYRQRPAPTTDTETYEFINDSKNPKPRGANWSFAYHVG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	KY554777	Lactococcus phage LW81, complete genome	33854-33875	1	0.955
LS483467_1	1.4\|1111239\|22\|LS483467\|CRISPRCasFinder	1111239-1111260	22	MG592392	Vibrio phage 1.005.O._10N.286.48.F2, partial genome	44110-44131	1	0.955
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	KR709302	Staphylococcus phage 55-2, complete genome	1531-1552	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	AB370268	Staphylococcus phage phiMR11 DNA, complete genome	1791-1812	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	MK348510	Staphylococcus phage vB_SauS_fPfSau02, complete genome	27246-27267	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	AY954963	Bacteriophage 55, complete genome	28642-28663	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	KR709303	Staphylococcus phage 55-3, complete genome	1531-1552	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	KC595279	Staphylococcus phage StauST398-5, complete genome	2445-2466	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	MK211557	Staphylococcus phage Henu2, complete genome	14817-14838	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	NC_010147	Staphylococcus phage phiMR11, complete genome	1791-1812	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	NC_007060	Staphylococcus phage 55, complete genome	28642-28663	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	KY554772	Lactococcus phage AM5, complete genome	31789-31810	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	HM029250	Lactococcus phage 949, complete genome	27604-27625	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	NC_049856	Lactococcus phage AM4, complete genome	13834-13855	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	MN856100	Bacteriophage sp. isolate 2, complete genome	91548-91569	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	NC_027341	Lactococcus phage WRP3, complete genome	32003-32024	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	KF926093	Lactococcus phage phiL47, complete genome	32986-33007	2	0.909
LS483467_1	1.3\|1111191\|22\|LS483467\|CRISPRCasFinder	1111191-1111212	22	NC_049857	Lactococcus phage P1048, complete genome	24078-24099	2	0.909
LS483467_1	1.4\|1111239\|22\|LS483467\|CRISPRCasFinder	1111239-1111260	22	MG592414	Vibrio phage 1.030.O._10N.222.55.F9, partial genome	39646-39667	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_AP023149	Klebsiella pneumoniae strain SMKP03 plasmid pSMKP03L, complete sequence	16399-16420	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	CP052527	Klebsiella pneumoniae strain B16KP0177 plasmid pB16KP0177-3, complete sequence	16202-16223	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP046951	Klebsiella pneumoniae strain BD_DM_914 plasmid punnamed2, complete sequence	14040-14061	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP046941	Klebsiella pneumoniae strain BD_DM_697 plasmid punnamed2	14040-14061	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP035909	Klebsiella pneumoniae strain BA4656 plasmid unnamed2, complete sequence	16400-16421	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP046383	Klebsiella pneumoniae strain BD_DM_782 plasmid punnamed2, complete sequence	14040-14061	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP044370	Klebsiella pneumoniae strain 2018C01-046 plasmid p2018C01-046-2, complete sequence	53348-53369	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	LR134218	Klebsiella aerogenes strain NCTC10317 genome assembly, plasmid: 2	51295-51316	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP019918	Borreliella burgdorferi strain PAbe plasmid p_cp32-5-1, complete sequence	20556-20577	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP019918	Borreliella burgdorferi strain PAbe plasmid p_cp32-5-1, complete sequence	51299-51320	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP036194	Klebsiella pneumoniae strain BA34918 plasmid pIncFIB, complete sequence	26931-26952	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NC_000948	Borreliella burgdorferi B31 plasmid cp32-1, complete sequence	27347-27368	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NC_000953	Borreliella burgdorferi B31 plasmid cp32-8, complete sequence	27482-27503	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP019846	Borreliella burgdorferi plasmid cp32-1, complete sequence	27323-27344	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP019849	Borreliella burgdorferi plasmid cp32-5, complete sequence	27271-27292	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP019756	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp32-1_1, complete sequence	27272-27293	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP019756	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp32-1_1, complete sequence	58015-58036	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	NZ_CP027149	Klebsiella pneumoniae strain AR_0363 plasmid unnamed8	17433-17454	2	0.909
LS483467_1	1.5\|1111287\|22\|LS483467\|CRISPRCasFinder	1111287-1111308	22	KU847400	UNVERIFIED: Bacillus phage Crookii, complete genome	52601-52622	2	0.909

1. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to KY554777 (Lactococcus phage LW81, complete genome) position: , mismatch: 1, identity: 0.955

taaagaaaaagcagaagctgac	CRISPR spacer
tgaagaaaaagcagaagctgac	Protospacer
*.********************

2. spacer 1.4|1111239|22|LS483467|CRISPRCasFinder matches to MG592392 (Vibrio phage 1.005.O._10N.286.48.F2, partial genome) position: , mismatch: 1, identity: 0.955

gaaagccaaagcggatgcagat	CRISPR spacer
gaaagccaaagcggatgcagaa	Protospacer
*********************

3. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to KR709302 (Staphylococcus phage 55-2, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
taaagaaaaagcagaagctaaa	Protospacer
*******************.*

4. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to AB370268 (Staphylococcus phage phiMR11 DNA, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
taaagaaaaagcagaagctaaa	Protospacer
*******************.*

5. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to MK348510 (Staphylococcus phage vB_SauS_fPfSau02, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
taaagaaaaagcagaagctaaa	Protospacer
*******************.*

6. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to AY954963 (Bacteriophage 55, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
taaagaaaaagcagaagctaaa	Protospacer
*******************.*

7. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to KR709303 (Staphylococcus phage 55-3, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
taaagaaaaagcagaagctaaa	Protospacer
*******************.*

8. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to KC595279 (Staphylococcus phage StauST398-5, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
taaagaaaaagcagaagctaaa	Protospacer
*******************.*

9. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to MK211557 (Staphylococcus phage Henu2, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
taaagaaaaagcagaagctaaa	Protospacer
*******************.*

10. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to NC_010147 (Staphylococcus phage phiMR11, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
taaagaaaaagcagaagctaaa	Protospacer
*******************.*

11. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to NC_007060 (Staphylococcus phage 55, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
taaagaaaaagcagaagctaaa	Protospacer
*******************.*

12. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to KY554772 (Lactococcus phage AM5, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
tgaagaaaaagcagaagctgat	Protospacer
*.*******************.

13. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to HM029250 (Lactococcus phage 949, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
tgaagaaaaagcagaagctgat	Protospacer
*.*******************.

14. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to NC_049856 (Lactococcus phage AM4, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
tgaagaaaaagcagaagctgat	Protospacer
*.*******************.

15. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to MN856100 (Bacteriophage sp. isolate 2, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
taaagaaaaagcagaagcagaa	Protospacer
****************** **

16. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to NC_027341 (Lactococcus phage WRP3, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
tgaagaaaaagcagaagctgat	Protospacer
*.*******************.

17. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to KF926093 (Lactococcus phage phiL47, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
tgaagaaaaagcagaagctgat	Protospacer
*.*******************.

18. spacer 1.3|1111191|22|LS483467|CRISPRCasFinder matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 2, identity: 0.909

taaagaaaaagcagaagctgac	CRISPR spacer
tgaagaaaaagcagaagctgat	Protospacer
*.*******************.

19. spacer 1.4|1111239|22|LS483467|CRISPRCasFinder matches to MG592414 (Vibrio phage 1.030.O._10N.222.55.F9, partial genome) position: , mismatch: 2, identity: 0.909

gaaagccaaagcggatgcagat	CRISPR spacer
gagagccaaagcggatgcagaa	Protospacer
**.******************

20. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_AP023149 (Klebsiella pneumoniae strain SMKP03 plasmid pSMKP03L, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
taaaggtaaggcagataaagac	Protospacer
***** ***************

21. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to CP052527 (Klebsiella pneumoniae strain B16KP0177 plasmid pB16KP0177-3, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
taaaggtaaggcagataaagac	Protospacer
***** ***************

22. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP046951 (Klebsiella pneumoniae strain BD_DM_914 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
taaaggtaaggcagataaagac	Protospacer
***** ***************

23. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP046941 (Klebsiella pneumoniae strain BD_DM_697 plasmid punnamed2) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
taaaggtaaggcagataaagac	Protospacer
***** ***************

24. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP035909 (Klebsiella pneumoniae strain BA4656 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
taaaggtaaggcagataaagac	Protospacer
***** ***************

25. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP046383 (Klebsiella pneumoniae strain BD_DM_782 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
taaaggtaaggcagataaagac	Protospacer
***** ***************

26. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP044370 (Klebsiella pneumoniae strain 2018C01-046 plasmid p2018C01-046-2, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
taaaggtaaggcagataaagac	Protospacer
***** ***************

27. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to LR134218 (Klebsiella aerogenes strain NCTC10317 genome assembly, plasmid: 2) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
taaaggtaaggcagataaagac	Protospacer
***** ***************

28. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP019918 (Borreliella burgdorferi strain PAbe plasmid p_cp32-5-1, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
aaaagctaaggcagaaaaagaa	Protospacer
 ************** ******

29. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP019918 (Borreliella burgdorferi strain PAbe plasmid p_cp32-5-1, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
aaaagctaaggcagaaaaagaa	Protospacer
 ************** ******

30. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP036194 (Klebsiella pneumoniae strain BA34918 plasmid pIncFIB, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
taaaggtaaggcagataaagac	Protospacer
***** ***************

31. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NC_000948 (Borreliella burgdorferi B31 plasmid cp32-1, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
aaaagctaaggcagaaaaagaa	Protospacer
 ************** ******

32. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NC_000953 (Borreliella burgdorferi B31 plasmid cp32-8, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
aaaagctaaggcagaaaaagaa	Protospacer
 ************** ******

33. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP019846 (Borreliella burgdorferi plasmid cp32-1, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
aaaagctaaggcagaaaaagaa	Protospacer
 ************** ******

34. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP019849 (Borreliella burgdorferi plasmid cp32-5, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
aaaagctaaggcagaaaaagaa	Protospacer
 ************** ******

35. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP019756 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp32-1_1, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
aaaagctaaggcagaaaaagaa	Protospacer
 ************** ******

36. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP019756 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp32-1_1, complete sequence) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
aaaagctaaggcagaaaaagaa	Protospacer
 ************** ******

37. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to NZ_CP027149 (Klebsiella pneumoniae strain AR_0363 plasmid unnamed8) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
taaaggtaaggcagataaagac	Protospacer
***** ***************

38. spacer 1.5|1111287|22|LS483467|CRISPRCasFinder matches to KU847400 (UNVERIFIED: Bacillus phage Crookii, complete genome) position: , mismatch: 2, identity: 0.909

taaagctaaggcagataaagaa	CRISPR spacer
tacagctaaggcagataaagat	Protospacer
** ******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

793035 : 862228

Salmonella_phage(35.9%)

protease,portal,terminase,tail,head,capsid,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI31894.1\|793035_793656_+\|protease	ATP-dependent Clp protease proteolytic subunit precursor	A0A223W000	Agrobacterium_phage	8.4e-64	63.9
SQI31895.1\|793773_795051_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.3e-131	57.5
SQI31896.1\|795283_796222_+\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	2.4e-22	28.5
SQI31897.1\|796181_797714_+\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.3e-187	65.7
SQI31899.1\|797953_798229_+	NS1	A4JWM7	Burkholderia_virus	3.0e-21	61.8
SQI31900.1\|798402_800271_+	Peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQI31901.1\|800434_800806_+	competence protein ComEA helix-hairpin-helix repeat region	NA	NA	NA	NA
SQI31902.1\|801052_801481_+	Long-chain acyl-CoA thioesterase FadM	NA	NA	NA	NA
SQI31903.1\|801515_802127_-	7-cyano-7-deazaguanine synthase	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.8e-71	67.7
SQI31904.1\|802448_802910_+	Leucine-responsive regulatory protein	NA	NA	NA	NA
SQI31905.1\|803007_804753_+	Probable multidrug resistance ABC transporter ATP-binding/permease protein YheI	W8CYL7	Bacillus_phage	4.6e-51	29.2
SQI31906.1\|804749_805019_+	Multidrug resistance-like ATP-binding protein MdlB	NA	NA	NA	NA
SQI31907.1\|804969_806532_+	Multidrug resistance-like ATP-binding protein MdlB	W8CYL7	Bacillus_phage	1.9e-35	27.3
SQI31908.1\|806678_807545_-	Acyl-CoA thioesterase 2	NA	NA	NA	NA
SQI31909.1\|807783_808242_+	Uncharacterised protein	NA	NA	NA	NA
SQI31910.1\|808856_809060_-	Histone-like protein	NA	NA	NA	NA
SQI31911.1\|809132_809501_-	Toxin overexpression modulator in biofilms	NA	NA	NA	NA
SQI31912.1\|810026_811406_-	Membrane-bound lytic murein transglycosylase D precursor	A0A0S2SXN2	Bacillus_phage	5.0e-08	38.7
SQI31913.1\|811488_812241_-	Hydroxyacylglutathione hydrolase	NA	NA	NA	NA
SQI31914.1\|812277_813003_+	Methyltransferase domain	NA	NA	NA	NA
SQI31922.1\|813015_813486_-	Ribonuclease HI	J9Q745	Salmonella_phage	3.4e-49	57.9
SQI31941.1\|813540_814302_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.3e-38	37.4
SQI31946.1\|815546_816056_+	Uncharacterised protein	NA	NA	NA	NA
SQI31949.1\|816121_820465_+	HYR domain	NA	NA	NA	NA
SQI31950.1\|820753_821620_+	type I secretion outer membrane protein, TolC family	NA	NA	NA	NA
SQI31953.1\|821606_821807_+	Uncharacterised protein	NA	NA	NA	NA
SQI31956.1\|821810_824027_+	RTX-I toxin determinant B	F2Y2R6	Organic_Lake_phycodnavirus	1.4e-28	30.4
SQI31957.1\|824028_825264_+	Type I secretion system membrane fusion protein PrsE	NA	NA	NA	NA
SQI31959.1\|825736_827731_+	Transketolase 1	NA	NA	NA	NA
SQI31962.1\|828051_829071_+	D-erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
SQI31963.1\|829174_830338_+	Phosphoglycerate kinase	NA	NA	NA	NA
SQI31968.1\|830398_831475_+	Fructose-bisphosphate aldolase class 2	NA	NA	NA	NA
SQI31969.1\|831584_831836_-	anaerobic benzoate catabolism transcriptional regulator	NA	NA	NA	NA
SQI31971.1\|831867_833256_-	Lipid A core - O-antigen ligase and related enzymes	NA	NA	NA	NA
SQI31973.1\|833277_834333_-	Uncharacterised protein	NA	NA	NA	NA
SQI31976.1\|834348_834855_-	P pilus assembly protein, pilin FimA	NA	NA	NA	NA
SQI32014.1\|834865_835402_-	Major MR/P fimbria protein precursor	NA	NA	NA	NA
SQI32016.1\|835394_835760_-	Uncharacterised protein	NA	NA	NA	NA
SQI32017.1\|835788_836517_-	Chaperone protein papD precursor	NA	NA	NA	NA
SQI32025.1\|836529_839019_-	Outer membrane usher protein papC precursor	NA	NA	NA	NA
SQI32029.1\|839055_839649_-	long polar fimbrial protein LpfA	NA	NA	NA	NA
SQI32030.1\|839654_840011_-	Pap fimbrial major pilin protein precursor	NA	NA	NA	NA
SQI32033.1\|839967_840207_-	Major MR/P fimbria protein precursor	NA	NA	NA	NA
SQI32034.1\|840676_841159_-	Uncharacterised protein	NA	NA	NA	NA
SQI32037.1\|841167_841968_-	DNA-binding transcriptional regulator BaeR	NA	NA	NA	NA
SQI32038.1\|842273_842492_-	DNA-binding transcriptional regulator	Q53ZE7	Salmonella_virus	5.2e-21	67.6
SQI32039.1\|842565_843651_-	Phage protein D	E5G6Q3	Salmonella_phage	4.6e-118	59.2
SQI32040.1\|843647_844094_-	Phage protein U	Q6K1G5	Salmonella_virus	2.2e-42	57.3
SQI32041.1\|844096_845098_-\|tail	Phage-related minor tail protein	A0A1S6L010	Salmonella_phage	2.6e-22	31.1
SQI32042.1\|845192_846710_-	Phage-related protein	A0A2H4JE61	uncultured_Caudovirales_phage	3.8e-94	43.8
SQI32043.1\|846836_847142_-\|tail	Phage tail protein E	F1BUU0	Erwinia_phage	2.6e-18	55.1
SQI32044.1\|847157_847673_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	1.8e-59	64.3
SQI32045.1\|847675_848848_-\|tail	Phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.2e-166	72.9
SQI32046.1\|848964_849492_-\|tail	Bacteriophage tail assembly protein	F1BUK2	Cronobacter_phage	8.8e-30	45.6
SQI32047.1\|849500_850733_-	Uncharacterised protein	A0A1S6KZZ8	Salmonella_phage	8.6e-60	41.7
SQI32048.1\|850729_851341_-\|tail	Bacteriophage P2-related tail formation protein	F1BUP2	Erwinia_phage	4.7e-75	65.8
SQI32049.1\|851333_852245_-	Uncharacterized homolog of phage Mu protein gp47	A0A218M4K5	Erwinia_phage	1.3e-102	64.4
SQI32050.1\|852247_852589_-\|plate	Phage P2 baseplate assembly protein gpV	F1BUP4	Erwinia_phage	9.7e-30	57.7
SQI32051.1\|852585_852702_-	Uncharacterised protein	A0A0A7NRZ3	Enterobacteria_phage	3.9e-07	63.2
SQI32052.1\|852698_852938_-\|plate	Phage P2 baseplate assembly protein gpV	A0A2I8TV69	Erwinia_phage	1.4e-14	60.0
SQI32053.1\|852997_853207_-\|plate	Phage P2 baseplate assembly protein gpV	S4TUB5	Salmonella_phage	1.3e-16	65.2
SQI32054.1\|853213_853594_-	Uncharacterised protein	NA	NA	NA	NA
SQI32055.1\|853682_854300_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	4.5e-25	35.6
SQI32056.1\|854296_854770_-\|tail	P2 phage tail completion protein R (GpR)	E5G6N3	Salmonella_phage	1.3e-24	40.8
SQI32057.1\|855365_855623_-	Peptidase M15	NA	NA	NA	NA
SQI32058.1\|855626_855923_-	Uncharacterised protein	E7C9S8	Salmonella_phage	2.0e-23	57.0
SQI32059.1\|855929_856133_-	Phage Tail Protein X	E5E3W5	Burkholderia_phage	8.0e-16	57.4
SQI32060.1\|856129_856606_-\|head	Phage head completion protein (GPL)	A0A0F7LDJ1	Escherichia_phage	3.2e-23	40.0
SQI32061.1\|856691_857327_-\|terminase	Phage small terminase subunit	V9IQK3	Stenotrophomonas_phage	4.0e-21	40.0
SQI32062.1\|857353_858436_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	4.5e-121	62.1
SQI32063.1\|858448_859276_-\|capsid	Phage capsid scaffolding protein (GPO) serine peptidase	F1BUR1	Erwinia_phage	8.0e-54	45.6
SQI32064.1\|859432_860338_+	Uncharacterized conserved protein	A0A1S6KZW3	Salmonella_phage	3.6e-116	72.1
SQI32065.1\|860354_861191_+	Uncharacterized conserved protein	A0A1S6KZW3	Salmonella_phage	4.7e-126	75.2
SQI32066.1\|861190_862228_+\|portal	phage portal protein, PBSX family	A0A1S6KZW5	Salmonella_phage	2.0e-139	72.0

DBSCAN-SWA_2

867398 : 875667

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI32071.1\|867398_868532_-	Domain of uncharacterised function (DUF955)	B6SBZ6	Clostridium_virus	7.2e-29	28.7
SQI32072.1\|868542_868929_-	Uncharacterised protein	NA	NA	NA	NA
SQI32073.1\|868916_869135_-	Uncharacterised protein	NA	NA	NA	NA
SQI32074.1\|869336_872114_-	Bacteriophage replication gene A protein (GPA)	E5G6L9	Salmonella_phage	7.7e-109	36.8
SQI32075.1\|872241_872541_-	Domain of Uncharacterised Function with PDB structure	A0A059T699	Listeria_phage	1.7e-09	46.6
SQI32076.1\|872541_872763_-	conjugal transfer protein TraR	A0A0M3LS11	Mannheimia_phage	3.4e-12	52.8
SQI32077.1\|872755_873010_-	Uncharacterised protein	NA	NA	NA	NA
SQI32078.1\|873079_873499_-	Uncharacterised protein	NA	NA	NA	NA
SQI32079.1\|873507_873669_-	Uncharacterised protein	NA	NA	NA	NA
SQI32080.1\|873673_873898_-	Uncharacterised protein	NA	NA	NA	NA
SQI32081.1\|873894_874194_-	Regulatory phage protein cox	Q1JS60	Enterobacteria_phage	3.2e-29	67.0
SQI32084.1\|874317_874617_+	Uncharacterised protein	Q1JS61	Enterobacteria_phage	2.2e-33	69.7
SQI32087.1\|874683_875667_+	Tyrosine recombinase XerD	Q83VS6	Escherichia_phage	2.4e-105	56.2

DBSCAN-SWA_3

1024196 : 1032822

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI32693.1\|1024196_1025168_-	Ribonucleoside-diphosphate reductase 2 subunit beta	A0A0M4S3B4	Mycobacterium_phage	3.9e-132	72.5
SQI32698.1\|1025353_1026625_-	Ribonucleoside-diphosphate reductase subunit alpha 2	V9VI16	Lactococcus_phage	1.6e-117	53.3
SQI32699.1\|1026662_1026977_-	Ribonucleoside-diphosphate reductase 2 subunit alpha	A8E2R1	Enterococcus_phage	5.8e-29	61.4
SQI32707.1\|1026957_1027317_-	Ribonucleoside-diphosphate reductase subunit alpha	A0A2H4P8B4	Corynebacterium_phage	4.9e-32	64.2
SQI32710.1\|1027309_1027744_-	ribonucleotide reductase stimulatory protein	A0A142F1R4	Bacillus_phage	1.4e-12	34.1
SQI32716.1\|1027755_1027983_-	Glutaredoxin-like protein nrdH	V5UN81	Mycobacterium_phage	2.8e-17	52.1
SQI32718.1\|1028281_1028740_+	Methylated-DNA--protein-cysteine methyltransferase, constitutive	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.0e-18	43.1
SQI32725.1\|1029353_1030319_-	Lipoyl synthase	NA	NA	NA	NA
SQI32728.1\|1030744_1031017_-	Octanoyltransferase	NA	NA	NA	NA
SQI32730.1\|1031174_1031438_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQI32737.1\|1031592_1032822_-	D-alanyl-D-alanine carboxypeptidase dacA precursor	B6DZZ7	Stx2-converting_phage	9.6e-104	48.8

DBSCAN-SWA_4

1187065 : 1240978

Enterobacteria_phage(18.6%)

portal,tail,head,capsid,lysis,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI33064.1\|1187065_1189093_-\|tRNA	Methionine--tRNA ligase	A0A1V0SDF2	Indivirus	3.6e-55	27.7
SQI33065.1\|1189331_1190444_+	antiporter inner membrane protein	NA	NA	NA	NA
SQI33066.1\|1190662_1191223_+	LemA family	NA	NA	NA	NA
SQI33067.1\|1191252_1192209_+	Protease HtpX homolog	NA	NA	NA	NA
SQI33068.1\|1192360_1193005_+	Uridine kinase	A0A1V0SAA3	Catovirus	1.7e-38	41.7
SQI33069.1\|1193071_1193455_+	Deoxycytidine triphosphate deaminase	NA	NA	NA	NA
SQI33070.1\|1193426_1193654_+	Deoxycytidine triphosphate deaminase	NA	NA	NA	NA
SQI33071.1\|1193770_1195609_+	putative assembly protein	NA	NA	NA	NA
SQI33072.1\|1195884_1196220_-	Uncharacterised protein	NA	NA	NA	NA
SQI33073.1\|1196405_1197722_-	magnesium/cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	5.8e-22	41.9
SQI33074.1\|1197858_1197990_-	Integral membrane protein TerC family	NA	NA	NA	NA
SQI33075.1\|1198232_1199639_+	6-phosphogluconate dehydrogenase, decarboxylating	A0A1D7RI04	Synechococcus_phage	3.5e-33	29.8
SQI33076.1\|1199706_1199958_-	Pyocin activator protein PrtN	A0A1W6JP35	Morganella_phage	1.1e-19	62.0
SQI33077.1\|1200155_1200734_-	phage N-6-adenine-methyltransferase	A0A1W6JP96	Morganella_phage	1.4e-57	60.3
SQI33078.1\|1200690_1200909_-	Uncharacterised protein	NA	NA	NA	NA
SQI33079.1\|1200868_1201213_-	Protein of uncharacterised function (DUF2591)	A0A1P8DTH6	Proteus_phage	7.2e-17	52.5
SQI33080.1\|1201205_1201391_-	Uncharacterised protein	NA	NA	NA	NA
SQI33081.1\|1201548_1201779_-	Uncharacterised protein	NA	NA	NA	NA
SQI33082.1\|1201847_1202099_-	Uncharacterised protein	NA	NA	NA	NA
SQI33083.1\|1202142_1202676_-	Uncharacterised protein	R9VWB9	Serratia_phage	2.0e-13	27.5
SQI33084.1\|1202845_1203181_-	Uncharacterised protein	A0A1C9LVV9	Vibrio_phage	4.1e-25	39.9
SQI33085.1\|1203219_1203675_-	Helix-destabilizing protein	A0A1W6JNW8	Morganella_phage	1.0e-42	76.0
SQI33106.1\|1203664_1204471_-	P33	A0A1P8DTF2	Proteus_phage	1.1e-127	85.0
SQI33108.1\|1204448_1205282_-	Exodeoxyribonuclease 8	A0A1P8DTH1	Proteus_phage	1.5e-137	83.1
SQI33113.1\|1205278_1205446_-	Uncharacterised protein	NA	NA	NA	NA
SQI33114.1\|1205455_1205632_-	Uncharacterised protein	A0A1P8DTG5	Proteus_phage	1.5e-10	57.9
SQI33115.1\|1205573_1205756_-	Uncharacterised protein	A0A1P8DTH8	Proteus_phage	5.3e-19	80.0
SQI33116.1\|1205863_1206088_-	Uncharacterised protein	NA	NA	NA	NA
SQI33117.1\|1206560_1206878_-	Uncharacterised protein	NA	NA	NA	NA
SQI33118.1\|1207321_1208086_-	KilA-N domain	K7YGK4	Megavirus	2.1e-08	45.6
SQI33119.1\|1208185_1208488_-	Uncharacterised protein	NA	NA	NA	NA
SQI33120.1\|1208509_1208851_-	Protein of uncharacterised function (DUF3024)	A0A1W6JP12	Morganella_phage	6.9e-36	58.4
SQI33121.1\|1209247_1209892_-	Uncharacterized HTH-type transcriptional regulator CBU_1416	K7PH19	Enterobacteria_phage	5.8e-76	64.7
SQI33122.1\|1209997_1210207_+	Helix-turn-helix	K7PKH4	Enterobacteria_phage	2.0e-25	79.4
SQI33123.1\|1210308_1210632_+	Uncharacterised protein	A0A1W6JNY4	Morganella_phage	2.5e-35	80.2
SQI33158.1\|1210618_1210879_+	Uncharacterised protein	NA	NA	NA	NA
SQI33161.1\|1210989_1211952_+	phage replication protein O, N-terminal domain	K7PGZ0	Enterobacteria_phage	7.1e-62	41.0
SQI33163.1\|1211948_1212635_+	Replication protein P	A0A1P8DTF3	Proteus_phage	2.8e-60	52.5
SQI33167.1\|1212644_1213550_+	Recombination-associated protein rdgC	S4TWL4	Salmonella_phage	4.6e-95	58.1
SQI33168.1\|1214082_1214532_+	Uncharacterised protein	A0A2I7R8L6	Vibrio_phage	2.2e-13	36.9
SQI33170.1\|1214528_1214744_+	Uncharacterised protein	NA	NA	NA	NA
SQI33171.1\|1214744_1215203_+	Bacteriophage Lambda NinG protein	C6ZR60	Salmonella_phage	7.3e-65	76.2
SQI33174.1\|1215199_1215484_+	Phage NinH protein	NA	NA	NA	NA
SQI33177.1\|1215487_1215856_+	Phage antitermination protein Q	A0A088CD47	Shigella_phage	1.0e-45	70.5
SQI33179.1\|1216051_1217722_-	E3 ubiquitin-protein ligase ipaH3	NA	NA	NA	NA
SQI33181.1\|1218064_1218370_+	Uncharacterised protein	NA	NA	NA	NA
SQI33183.1\|1218362_1218848_+	Uncharacterised protein	A0A1U9ZAE8	Proteus_phage	4.0e-61	73.7
SQI33185.1\|1219192_1219663_+\|lysis	Bacteriophage lysis protein	M1FJ79	Enterobacteria_phage	1.9e-12	32.3
SQI33187.1\|1219840_1220110_-	Uncharacterised protein	NA	NA	NA	NA
SQI33188.1\|1221863_1222412_+	Phage DNA packaging protein Nu1	A0A0U2S671	Escherichia_phage	3.8e-52	77.0
SQI33190.1\|1222383_1224300_+\|tail	Bacteriophage tail assembly protein	A0A0K2FJ14	Enterobacteria_phage	2.1e-246	63.0
SQI33192.1\|1224301_1224508_+	gpW	K7PM10	Enterobacteria_phage	4.8e-08	45.6
SQI33194.1\|1224504_1226082_+\|portal	phage portal protein, lambda family	E4WL21	Enterobacteria_phage	8.4e-185	63.3
SQI33196.1\|1226071_1227553_+	Protease 4	A0A2I6TC87	Escherichia_phage	8.1e-97	51.1
SQI33198.1\|1227590_1227806_+\|head	Bacteriophage lambda head decoration protein D	NA	NA	NA	NA
SQI33200.1\|1227750_1227930_+\|head	Bacteriophage lambda head decoration protein D	NA	NA	NA	NA
SQI33203.1\|1227956_1228985_+\|capsid	Phage major capsid protein E	C6ZCY2	Enterobacteria_phage	6.6e-106	57.2
SQI33206.1\|1228985_1229411_+	Uncharacterised protein	NA	NA	NA	NA
SQI33208.1\|1229403_1229760_+	Phage Head-Tail Attachment	NA	NA	NA	NA
SQI33209.1\|1229763_1230429_+	Uncharacterised protein	NA	NA	NA	NA
SQI33211.1\|1230431_1230977_+	Uncharacterised protein	NA	NA	NA	NA
SQI33214.1\|1230969_1231530_+\|plate	Phage P2 baseplate assembly protein gpV	A0A1B2LRU5	Wolbachia_phage	1.9e-14	35.5
SQI33216.1\|1231627_1233106_+\|tail	Phage tail sheath protein	R9TMQ0	Vibrio_phage	1.1e-77	37.5
SQI33219.1\|1233102_1233609_+\|tail	phage major tail tube protein	NA	NA	NA	NA
SQI33220.1\|1233666_1233972_+	Uncharacterised protein	NA	NA	NA	NA
SQI33234.1\|1234074_1235703_+	Uncharacterised protein	NA	NA	NA	NA
SQI33235.1\|1235696_1236182_+	Phage protein U	K4I406	Acidithiobacillus_phage	9.3e-18	38.0
SQI33237.1\|1236156_1236372_+	Phage Tail Protein X	R9TR63	Vibrio_phage	1.2e-09	47.1
SQI33239.1\|1236375_1237506_+	Phage protein D	D4HTW7	Vibrio_phage	1.5e-34	36.1
SQI33241.1\|1237512_1237866_+	Gene 25-like lysozyme	V5YTB2	Pseudomonas_phage	6.9e-23	51.8
SQI33242.1\|1237849_1238752_+	Uncharacterized homolog of phage Mu protein gp47	D5LGZ3	Escherichia_phage	5.5e-64	47.7
SQI33243.1\|1238757_1239300_+\|tail	Bacteriophage P2-related tail formation protein	A0A0F7LDF3	Escherichia_phage	2.7e-26	39.0
SQI33244.1\|1239314_1240442_+	Uncharacterised protein	A0A0M3LS19	Mannheimia_phage	2.9e-22	45.7
SQI33245.1\|1240450_1240978_+\|tail	Bacteriophage tail assembly protein	F1BUK2	Cronobacter_phage	5.1e-30	46.2

DBSCAN-SWA_5

1286640 : 1344528

Morganella_phage(31.03%)

protease,portal,terminase,tail,head,capsid,lysis,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI33447.1\|1286640_1286880_-	Cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-14	58.5
SQI33449.1\|1287170_1288304_-	Site-specific recombinase XerC	Q77Z04	Phage_21	2.9e-139	65.7
SQI33451.1\|1288293_1288530_-	Uncharacterised protein	NA	NA	NA	NA
SQI33453.1\|1288561_1289359_-	DNA adenine methylase	A0A0K1LM14	Caulobacter_phage	3.0e-66	47.2
SQI33455.1\|1289345_1289891_-	Uncharacterised protein	A0A2I7RIF7	Vibrio_phage	2.1e-10	32.0
SQI33457.1\|1290378_1290717_-	Uncharacterised protein	NA	NA	NA	NA
SQI33459.1\|1290727_1290931_-	Uncharacterised protein	A0A1U9ZAG7	Proteus_phage	9.8e-06	44.2
SQI33460.1\|1291070_1291712_-	Uncharacterised protein	A0A248SL66	Klebsiella_phage	7.6e-28	32.1
SQI33463.1\|1291795_1292698_-	recombination associated protein	A0A1W6JP69	Morganella_phage	6.4e-81	52.2
SQI33464.1\|1292842_1293028_-	Carbon storage regulator homolog	A0A2I7RT00	Vibrio_phage	1.1e-11	66.7
SQI33467.1\|1293058_1293289_-	Uncharacterised protein	NA	NA	NA	NA
SQI33469.1\|1293639_1294302_-	Helix-turn-helix	A0A1R3Y604	Salmonella_virus	3.0e-19	61.9
SQI33471.1\|1294343_1294565_+	Uncharacterized protein conserved in bacteria, prophage-related	Q76H55	Enterobacteria_phage	1.2e-20	66.2
SQI33474.1\|1294615_1295278_+	Uncharacterised protein	NA	NA	NA	NA
SQI33477.1\|1295292_1295751_+	Uncharacterised protein	A0A1W6JP72	Morganella_phage	3.2e-44	58.3
SQI33480.1\|1295833_1296010_+	Uncharacterised protein	NA	NA	NA	NA
SQI33481.1\|1295999_1296179_+	Uncharacterised protein	NA	NA	NA	NA
SQI33484.1\|1296178_1297240_+	Conserved phage C-terminus (Phg_2220_C)	H2DE83	Erwinia_phage	1.3e-27	50.4
SQI33486.1\|1297236_1297482_+	Uncharacterised protein	A0A1W6JP32	Morganella_phage	3.5e-05	35.0
SQI33488.1\|1297481_1298015_+	phage N-6-adenine-methyltransferase	Q9MCP3	Enterobacteria_phage	5.2e-62	64.1
SQI33490.1\|1298011_1298467_+	Uncharacterised protein	NA	NA	NA	NA
SQI33492.1\|1298463_1298646_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
SQI33494.1\|1298638_1299043_+	Uncharacterised protein	NA	NA	NA	NA
SQI33498.1\|1299027_1299402_+	Crossover junction endodeoxyribonuclease rusA	K7PKN5	Enterobacterial_phage	6.4e-27	54.2
SQI33508.1\|1299398_1299938_+	Protein of uncharacterised function (DUF968)	A0A1W6JP62	Morganella_phage	4.6e-42	65.2
SQI33514.1\|1299970_1300318_+	Phage antitermination protein Q	A0A0P0ZCW0	Stx2-converting_phage	2.6e-46	73.6
SQI33515.1\|1300342_1300828_-	Uncharacterised protein	NA	NA	NA	NA
SQI33517.1\|1300851_1301673_-	Uncharacterised protein	NA	NA	NA	NA
SQI33519.1\|1302385_1302697_+	Uncharacterised protein	NA	NA	NA	NA
SQI33520.1\|1302689_1303175_+	Uncharacterised protein	A0A1U9ZAE8	Proteus_phage	5.7e-60	71.3
SQI33524.1\|1303176_1303632_+\|lysis	Bacteriophage lysis protein	A0A1P8DTG0	Proteus_phage	1.2e-35	57.1
SQI33529.1\|1304054_1304252_+	Uncharacterised protein	NA	NA	NA	NA
SQI33532.1\|1304628_1304982_+	HNH endonuclease	A0A1W6JP27	Morganella_phage	1.9e-52	81.0
SQI33533.1\|1305154_1305649_+\|terminase	Phage terminase, small subunit	U5P067	Shigella_phage	4.5e-68	76.2
SQI33536.1\|1305645_1306353_+\|terminase	Phage terminase-like protein, large subunit	Q8HAD6	Salmonella_phage	1.2e-106	91.5
SQI33538.1\|1306352_1306949_+\|terminase	Phage terminase-like protein, large subunit	U5P0Q5	Shigella_phage	2.1e-88	73.2
SQI33539.1\|1306938_1307376_+\|terminase	Phage terminase-like protein, large subunit	Q8HAD6	Salmonella_phage	7.4e-59	81.2
SQI33542.1\|1307372_1307522_+	Uncharacterised protein	A0A1W6JP78	Morganella_phage	1.1e-11	66.7
SQI33545.1\|1307523_1307985_+\|portal	phage portal protein, HK97 family	A0A1W6JP33	Morganella_phage	1.5e-65	80.7
SQI33546.1\|1307947_1308757_+\|portal	phage portal protein, HK97 family	A0A1W6JP33	Morganella_phage	1.7e-133	87.3
SQI33549.1\|1308746_1309352_+\|head,protease	phage prohead protease, HK97 family	Q8SBH9	Shigella_phage	5.4e-84	78.5
SQI33552.1\|1309361_1310600_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A1W6JP20	Morganella_phage	1.3e-177	78.0
SQI33555.1\|1310688_1310991_+	uncharacterized phage protein (possible DNA packaging)	A0A1W6JNZ5	Morganella_phage	2.2e-33	68.0
SQI33556.1\|1310999_1311323_+\|head,tail	Bacteriophage head-tail adaptor	A0A1W6JP44	Morganella_phage	5.7e-40	72.0
SQI33559.1\|1311315_1311762_+	phage protein, HK97 gp10 family	A0A1W6JP15	Morganella_phage	1.1e-46	66.7
SQI33560.1\|1311761_1312097_+	Protein of uncharacterised function (DUF3168)	A0A1W6JP05	Morganella_phage	3.4e-35	65.8
SQI33562.1\|1312157_1312625_+	Uncharacterised protein	A0A1W6JP06	Morganella_phage	2.0e-73	90.3
SQI33564.1\|1312628_1313006_+\|tail	Phage tail assembly chaperone	A0A1W6JP08	Morganella_phage	1.6e-49	80.0
SQI33566.1\|1313017_1313308_+	Uncharacterised protein	A0A1W6JP68	Morganella_phage	5.7e-39	89.2
SQI33568.1\|1313328_1315299_+\|tail	Phage-related minor tail protein	A0A1P8DTH2	Proteus_phage	3.9e-155	56.5
SQI33569.1\|1315485_1316166_+\|tail	Phage-related minor tail protein	A0A1W6JP49	Morganella_phage	1.9e-77	74.4
SQI33572.1\|1316305_1316611_+	Uncharacterised protein	A0A2H4JHR1	uncultured_Caudovirales_phage	6.6e-14	50.0
SQI33575.1\|1316612_1316873_+	Phage-related protein	K7P7R1	Enterobacteria_phage	4.9e-26	61.4
SQI33576.1\|1316945_1317206_+\|tail	phage minor tail protein L	A0A1P8DTI3	Proteus_phage	3.9e-23	61.9
SQI33580.1\|1317238_1317688_+\|tail	phage minor tail protein L	K7P6W4	Enterobacteria_phage	5.5e-49	57.7
SQI33583.1\|1317684_1318395_+	NlpC/P60 family	F1C573	Cronobacter_phage	1.2e-87	65.6
SQI33585.1\|1318391_1318997_+\|tail	Phage-related protein, tail component	F1C572	Cronobacter_phage	6.3e-56	59.6
SQI33587.1\|1319052_1320243_+	Uncharacterised protein	F1C571	Cronobacter_phage	1.1e-147	63.6
SQI33590.1\|1320199_1322014_+	Fibronectin type III domain	A0A1P8DTI4	Proteus_phage	3.7e-168	49.9
SQI33592.1\|1322054_1322717_+	Fibronectin type III protein	A0A2P0ZZ91	Klebsiella_phage	7.4e-18	40.7
SQI33593.1\|1323003_1323096_+	Uncharacterised protein	NA	NA	NA	NA
SQI33595.1\|1323034_1323259_+\|tail	Prophage tail fibre N-terminal	NA	NA	NA	NA
SQI33596.1\|1323529_1323670_+	Uncharacterised protein	Q8W610	Enterobacteria_phage	2.6e-10	75.0
SQI33599.1\|1323881_1324061_+	Uncharacterised protein	NA	NA	NA	NA
SQI33600.1\|1324064_1324553_+	death-on-curing family protein	NA	NA	NA	NA
SQI33603.1\|1324586_1324868_-	DNA-damage-inducible protein I	A0A1W6JP10	Morganella_phage	1.2e-12	44.6
SQI33610.1\|1325492_1325813_+\|protease	ATP-dependent Clp protease adapter protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.3e-15	51.2
SQI33614.1\|1325844_1328130_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.5e-170	42.9
SQI33616.1\|1328197_1328416_-	Translation initiation factor IF-1	NA	NA	NA	NA
SQI33619.1\|1328555_1329278_-\|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
SQI33622.1\|1329286_1330168_-	Lipid A export ATP-binding/permease protein MsbA	F2Y2R6	Organic_Lake_phycodnavirus	1.2e-23	30.5
SQI33625.1\|1330154_1331030_-	Probable ABC transporter ATP-binding protein HI_0664	NA	NA	NA	NA
SQI33626.1\|1331032_1332799_-	ATP-binding/permease protein CydD	F2Y302	Organic_Lake_phycodnavirus	2.7e-14	29.9
SQI33630.1\|1333118_1334804_-	Uncharacterised protein	NA	NA	NA	NA
SQI33631.1\|1334989_1335952_-	Thioredoxin reductase	A0A2I2L5E1	Orpheovirus	6.2e-66	46.4
SQI33634.1\|1336488_1336983_+	Leucine-responsive regulatory protein	NA	NA	NA	NA
SQI33637.1\|1337395_1339591_+	DNA translocase FtsK	NA	NA	NA	NA
SQI33639.1\|1339577_1340072_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.4e-29	49.6
SQI33642.1\|1340068_1341055_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.4e-52	50.6
SQI33644.1\|1341141_1341762_+	P20	NA	NA	NA	NA
SQI33646.1\|1341786_1343130_+	Replication-associated recombination protein A	G3MBE0	Bacillus_virus	4.3e-81	40.3
SQI33649.1\|1343235_1344528_+\|tRNA	Serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.3e-95	44.7

DBSCAN-SWA_6

1685441 : 1719465

Proteus_phage(25.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI34664.1\|1685441_1686725_-	Integrase	Q8W658	Enterobacteria_phage	9.7e-115	46.6
SQI34665.1\|1686732_1686969_-	Putative excisionase (DUF1233)	S4TND0	Salmonella_phage	1.8e-22	59.7
SQI34666.1\|1687172_1687379_-	Uncharacterised protein	NA	NA	NA	NA
SQI34667.1\|1687356_1687749_-	Protein of uncharacterised function (DUF2591)	A0A1P8DTH6	Proteus_phage	4.2e-13	44.5
SQI34668.1\|1687752_1687947_-	Uncharacterised protein	NA	NA	NA	NA
SQI34669.1\|1687963_1688119_-	Uncharacterised protein	NA	NA	NA	NA
SQI34670.1\|1688275_1688497_-	Uncharacterised protein	NA	NA	NA	NA
SQI34671.1\|1688522_1688786_-	Uncharacterised protein	NA	NA	NA	NA
SQI34672.1\|1688820_1689459_-	Uncharacterised protein	NA	NA	NA	NA
SQI34673.1\|1689545_1690061_-	Uncharacterised protein	R9VWB9	Serratia_phage	8.6e-14	28.7
SQI34674.1\|1690182_1690434_+	Uncharacterised protein	NA	NA	NA	NA
SQI34675.1\|1690793_1691348_-	Uncharacterised protein	A0A2I7QTL0	Vibrio_phage	1.4e-30	39.5
SQI34676.1\|1691360_1691831_-	Helix-destabilizing protein	C6ZR36	Salmonella_phage	1.3e-45	59.9
SQI34689.1\|1691831_1692704_-	phage nucleotide-binding protein	A0A1B1P9H8	Acinetobacter_phage	7.1e-61	52.0
SQI34692.1\|1692719_1693031_-	Uncharacterised protein	NA	NA	NA	NA
SQI34694.1\|1693027_1693180_-	Uncharacterised protein	NA	NA	NA	NA
SQI34696.1\|1693189_1693366_-	Uncharacterised protein	A0A1P8DTG5	Proteus_phage	1.2e-07	54.4
SQI34766.1\|1693307_1693490_-	Uncharacterised protein	A0A1P8DTH8	Proteus_phage	5.0e-17	73.3
SQI34769.1\|1693569_1693902_-	Uncharacterised protein	NA	NA	NA	NA
SQI34770.1\|1693903_1694077_-	Uncharacterised protein	NA	NA	NA	NA
SQI34790.1\|1694106_1694376_-	Uncharacterised protein	A0A2I7RQ39	Vibrio_phage	2.5e-12	48.5
SQI34793.1\|1694449_1694581_-	Uncharacterised protein	NA	NA	NA	NA
SQI34794.1\|1694651_1694960_-	Uncharacterised protein	NA	NA	NA	NA
SQI34796.1\|1695337_1696078_-	HIRAN domain	NA	NA	NA	NA
SQI34797.1\|1696087_1697005_-	Uncharacterised protein	NA	NA	NA	NA
SQI34801.1\|1697080_1697761_-	Uncharacterized HTH-type transcriptional regulator CBU_1416	K7P850	Enterobacteria_phage	2.1e-60	59.5
SQI34802.1\|1697840_1698068_+	Uncharacterised protein	G9L677	Escherichia_phage	1.4e-24	70.7
SQI34803.1\|1698176_1698503_+	Uncharacterised protein	A0A1W6JNY4	Morganella_phage	7.5e-40	75.0
SQI34804.1\|1698527_1699322_+	ParB/RepB/Spo0J family partition protein	A0A2H4J902	uncultured_Caudovirales_phage	2.1e-96	74.5
SQI34805.1\|1699318_1700260_+	phage replication protein O, N-terminal domain	A0A1P8DTG2	Proteus_phage	7.1e-115	87.5
SQI34806.1\|1700256_1700931_+	Replication protein P	A0A1P8DTF3	Proteus_phage	3.7e-65	55.6
SQI34807.1\|1700956_1701166_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
SQI34808.1\|1701165_1701423_+	Protein of uncharacterised function (DUF551)	NA	NA	NA	NA
SQI34809.1\|1701422_1701701_+	Uncharacterised protein	A0A1U9ZAA1	Proteus_phage	2.8e-19	48.8
SQI34810.1\|1701697_1701883_+	Uncharacterised protein	NA	NA	NA	NA
SQI34811.1\|1701900_1702122_+	Uncharacterised protein	A0A1P8DTG8	Proteus_phage	1.8e-13	60.6
SQI34812.1\|1702135_1702570_+	Protein of uncharacterised function (DUF1367)	A0A096XEN2	Escherichia_phage	2.3e-52	66.2
SQI34813.1\|1702636_1703230_+	Bacteriophage Lambda NinG protein	A0A1P8DTE0	Proteus_phage	1.3e-74	76.9
SQI34814.1\|1703219_1703420_+	Phage NinH protein	NA	NA	NA	NA
SQI34815.1\|1703416_1704016_+	Protein of uncharacterised function (DUF1133)	A0A1V0E5R2	Salmonella_phage	2.5e-41	44.7
SQI34816.1\|1704592_1704910_+	Uncharacterised protein	NA	NA	NA	NA
SQI34817.1\|1705499_1705859_+	Uncharacterised protein	NA	NA	NA	NA
SQI34818.1\|1705863_1706220_+	Peptidase M15	A0A0G2SSI0	Proteus_phage	9.4e-36	63.2
SQI34822.1\|1706204_1706423_+	Uncharacterised protein	NA	NA	NA	NA
SQI34823.1\|1706455_1706761_+	Uncharacterised protein	A0A1W6JNV7	Morganella_phage	7.6e-10	61.5
SQI34824.1\|1706776_1706968_-	Uncharacterised protein	NA	NA	NA	NA
SQI34825.1\|1707061_1707181_-	Uncharacterised protein	NA	NA	NA	NA
SQI34826.1\|1707764_1708376_+	KilA-N domain	K7PH30	Enterobacteria_phage	9.2e-31	36.4
SQI34827.1\|1708380_1708548_+	Uncharacterised protein	I6S1R0	Salmonella_phage	4.6e-09	69.0
SQI34828.1\|1708528_1708885_+	Uncharacterised protein	NA	NA	NA	NA
SQI34829.1\|1709068_1709251_+	Uncharacterised protein	NA	NA	NA	NA
SQI34830.1\|1709530_1710133_+	Uncharacterised protein	A0A077KBY7	Edwardsiella_phage	3.0e-74	77.9
SQI34831.1\|1710135_1711623_+	Uncharacterised protein	A0A1W6JNY3	Morganella_phage	6.1e-262	87.6
SQI34832.1\|1711622_1712993_+	Uncharacterised protein	A0A1B0VMH0	Pseudomonas_phage	2.2e-120	49.4
SQI34833.1\|1712989_1714111_+	Phage Mu protein F like protein	I6PD76	Cronobacter_phage	1.2e-105	51.6
SQI34849.1\|1714223_1715000_+	Uncharacterised protein	A0A1B0VMG1	Pseudomonas_phage	7.8e-67	59.3
SQI34868.1\|1715013_1715967_+	Uncharacterised protein	A0A1B0VMF8	Pseudomonas_phage	3.4e-125	71.2
SQI34875.1\|1716101_1716257_+	Uncharacterised protein	NA	NA	NA	NA
SQI34877.1\|1716303_1716783_+	Uncharacterised protein	G8C7P9	Escherichia_phage	8.5e-32	47.7
SQI34881.1\|1716785_1717139_+	Uncharacterised protein	I6PD77	Cronobacter_phage	1.9e-20	44.7
SQI34884.1\|1717140_1717269_+	Uncharacterised protein	NA	NA	NA	NA
SQI34889.1\|1717252_1717723_+	Uncharacterised protein	G8C7Q1	Escherichia_phage	2.0e-41	56.7
SQI34892.1\|1717719_1718121_+	Uncharacterised protein	NA	NA	NA	NA
SQI34895.1\|1718169_1718823_+\|tail	Phage tail protein	G8C7Q3	Escherichia_phage	1.7e-59	56.0
SQI34898.1\|1718993_1719164_+	Domain of uncharacterised function (DUF1789)	NA	NA	NA	NA
SQI34900.1\|1719193_1719325_+	Uncharacterised protein	NA	NA	NA	NA
SQI34903.1\|1719327_1719465_+	Uncharacterised protein	A0A1P8DUR1	Escherichia_phage	4.3e-05	50.0

DBSCAN-SWA_7

1728035 : 1739446

Cronobacter_phage(66.67%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI34945.1\|1728035_1731041_+\|tail	Phage-related minor tail protein	K7PMB9	Enterobacterial_phage	2.9e-117	34.4
SQI34968.1\|1731079_1731424_+	Phage-related protein	I6PBN7	Cronobacter_phage	1.8e-23	46.4
SQI34969.1\|1731420_1732164_+\|tail	phage minor tail protein L	F1C574	Cronobacter_phage	3.5e-85	58.2
SQI34971.1\|1732160_1732871_+	NlpC/P60 family	F1C573	Cronobacter_phage	6.4e-84	63.9
SQI34975.1\|1732867_1733470_+\|tail	Phage-related protein, tail component	F1C572	Cronobacter_phage	2.7e-59	62.1
SQI34978.1\|1733526_1734168_+	Uncharacterised protein	F1C571	Cronobacter_phage	1.6e-65	60.6
SQI34980.1\|1734175_1735063_+	Uncharacterised protein	F1C571	Cronobacter_phage	7.4e-106	64.3
SQI34984.1\|1735010_1736831_+	Domain of uncharacterised function (DUF1983)	A0A1P8DTI4	Proteus_phage	2.7e-187	53.4
SQI34985.1\|1736827_1737844_+	Uncharacterised protein	NA	NA	NA	NA
SQI34988.1\|1737904_1739446_+	Uncharacterised protein	A0A1W6JNW0	Morganella_phage	1.7e-65	34.2

DBSCAN-SWA_8

2194862 : 2223594

Enterobacter_phage(25.93%)

tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI37484.1\|2194862_2196092_-	Uncharacterised protein	G9L6D4	Escherichia_phage	2.6e-101	46.0
SQI37492.1\|2196111_2196483_-	Uncharacterised protein	A0A1E1GEP2	Vibrio_phage	2.3e-21	52.8
SQI37494.1\|2196590_2196761_-	Uncharacterised protein	NA	NA	NA	NA
SQI37496.1\|2196760_2198230_-	Uncharacterised protein	A0A2I7R904	Vibrio_phage	8.1e-57	31.4
SQI37498.1\|2198232_2199711_-	Uncharacterised protein	A0A2I7RZ61	Vibrio_phage	4.2e-37	30.8
SQI37500.1\|2199715_2200522_-	Uncharacterised protein	A0A193GYI3	Enterobacter_phage	2.2e-64	51.5
SQI37502.1\|2200518_2200974_-	Uncharacterised protein	A0A193GYI3	Enterobacter_phage	3.9e-26	48.6
SQI37505.1\|2200986_2201562_-	Uncharacterised protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	1.7e-47	59.3
SQI37507.1\|2201561_2202032_-	Uncharacterised protein	G9L6D1	Escherichia_phage	9.8e-49	58.9
SQI37510.1\|2202033_2204490_-	Uncharacterised protein	Q858G3	Salmonella_phage	0.0e+00	69.2
SQI37511.1\|2204489_2204804_-	Uncharacterised protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	2.5e-24	59.1
SQI37514.1\|2205096_2205408_-	Uncharacterised protein	A0A193GYH8	Enterobacter_phage	3.6e-15	44.9
SQI37517.1\|2205620_2205800_-	Uncharacterised protein	NA	NA	NA	NA
SQI37518.1\|2205808_2206240_-	Uncharacterised protein	A0A193GYT9	Enterobacter_phage	6.7e-28	52.1
SQI37521.1\|2206297_2207281_-	Uncharacterised protein	G9L6C5	Escherichia_phage	4.6e-117	63.2
SQI37524.1\|2207298_2207970_-	Uncharacterised protein	A0A193GYS7	Enterobacter_phage	1.2e-44	63.5
SQI37526.1\|2207966_2208290_-	Uncharacterised protein	Q2A090	Sodalis_phage	3.3e-19	54.9
SQI37528.1\|2208286_2209939_-\|head,tail	Bacteriophage head to tail connecting protein	A0A193GYI4	Enterobacter_phage	6.5e-204	68.1
SQI37531.1\|2209954_2210170_-	Uncharacterised protein	NA	NA	NA	NA
SQI37532.1\|2210355_2211837_-	Uncharacterised protein	A0A0F6TK57	Escherichia_coli_O157_typing_phage	1.1e-231	76.7
SQI37535.1\|2211833_2212394_-	Terminase small subunit	G9L6B7	Escherichia_phage	3.8e-39	47.1
SQI37536.1\|2212438_2213038_-	Uncharacterised protein	NA	NA	NA	NA
SQI37539.1\|2213067_2213409_-	Uncharacterised protein	H9C172	Pectobacterium_phage	1.4e-33	61.0
SQI37540.1\|2213481_2214141_-	Uncharacterised protein	Q1MVG0	Enterobacteria_phage	5.4e-77	61.0
SQI37542.1\|2214219_2214432_-	Uncharacterised protein	NA	NA	NA	NA
SQI37544.1\|2214610_2214844_-	Uncharacterised protein	NA	NA	NA	NA
SQI37545.1\|2214847_2215255_-	Uncharacterised protein	NA	NA	NA	NA
SQI37549.1\|2215357_2215522_-	Uncharacterised protein	NA	NA	NA	NA
SQI37555.1\|2215602_2215965_-	Holliday junction resolvase	G8C7V6	Escherichia_phage	1.4e-39	66.7
SQI37556.1\|2215961_2216381_-	Uncharacterised protein	NA	NA	NA	NA
SQI37559.1\|2216603_2217251_-	Replication protein P	NA	NA	NA	NA
SQI37562.1\|2217319_2218000_-	Primosomal protein I	A0A193GZ86	Enterobacter_phage	2.3e-59	56.9
SQI37563.1\|2218021_2218225_-	Uncharacterised protein	R9UB09	Vibrio_phage	9.5e-09	52.0
SQI37566.1\|2218729_2219329_+	Helix-turn-helix	Q858D7	Salmonella_phage	1.0e-18	29.3
SQI37573.1\|2219659_2219818_+	Uncharacterised protein	NA	NA	NA	NA
SQI37575.1\|2219795_2221223_+	Exodeoxyribonuclease 8	K7P6V4	Enterobacteria_phage	7.0e-98	44.4
SQI37577.1\|2221278_2222340_+	RecT family	H6WRX0	Salmonella_phage	1.7e-96	49.5
SQI37584.1\|2222377_2222662_+	Uncharacterised protein	NA	NA	NA	NA
SQI37586.1\|2222700_2223039_+	Uncharacterised protein	NA	NA	NA	NA
SQI37587.1\|2223079_2223304_+	Uncharacterised protein	NA	NA	NA	NA
SQI37589.1\|2223306_2223594_+	Uncharacterised protein	A0A1B0UY37	Roseobacter_phage	8.2e-14	43.0

DBSCAN-SWA_9

2291516 : 2325098

Morganella_phage(63.64%)

protease,portal,capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI37874.1\|2291516_2292893_+\|protease	Uncharacterized protease yhbU precursor	Q6DW11	Phage_TP	1.9e-180	83.0
SQI37876.1\|2293229_2294027_-	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA
SQI37878.1\|2294480_2295056_+	Lipid A palmitoyltransferase PagP precursor	NA	NA	NA	NA
SQI37879.1\|2295159_2296524_-	Phenylalanine-specific permease	NA	NA	NA	NA
SQI37880.1\|2297100_2297484_+	Regulatory protein soxS	NA	NA	NA	NA
SQI37881.1\|2297644_2298454_+	Phosphatase YidA	NA	NA	NA	NA
SQI37884.1\|2298675_2300007_+	LIV-II	NA	NA	NA	NA
SQI37885.1\|2300047_2301004_-	D-malate degradation protein R	NA	NA	NA	NA
SQI37888.1\|2301096_2301555_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQI37890.1\|2301559_2302021_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQI37893.1\|2302022_2302907_-	Aromatic amino acid exporter YddG	NA	NA	NA	NA
SQI37895.1\|2303082_2304540_-	Na+/alanine symporter	NA	NA	NA	NA
SQI37896.1\|2305197_2305446_+	Uncharacterised protein	NA	NA	NA	NA
SQI37898.1\|2305733_2306105_-	Uncharacterised protein	NA	NA	NA	NA
SQI37900.1\|2306451_2306805_+	Uncharacterised protein	NA	NA	NA	NA
SQI37901.1\|2306863_2307373_-	Domain of Uncharacterised Function (DUF1543)	NA	NA	NA	NA
SQI37903.1\|2307652_2308816_+	Histidinol-phosphate aminotransferase	A0A142C026	Faustovirus	5.7e-13	28.7
SQI37905.1\|2308858_2309203_-	Protein of uncharacterised function, DUF486	NA	NA	NA	NA
SQI37906.1\|2309433_2310006_+	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
SQI37908.1\|2309987_2310212_+	Uncharacterised protein	NA	NA	NA	NA
SQI37912.1\|2310263_2310659_-	Uncharacterised protein	NA	NA	NA	NA
SQI37923.1\|2310823_2311204_-	Inner membrane protein ydgC	NA	NA	NA	NA
SQI37925.1\|2311628_2312213_+	Uncharacterised protein	NA	NA	NA	NA
SQI37928.1\|2312277_2312667_-	Uncharacterised protein	NA	NA	NA	NA
SQI37931.1\|2313391_2313514_+	Inner membrane protein yhaI	NA	NA	NA	NA
SQI37934.1\|2313513_2313771_+	Inner membrane protein yhaI	NA	NA	NA	NA
SQI37936.1\|2313857_2314268_-	Uncharacterised protein	NA	NA	NA	NA
SQI37938.1\|2314243_2314615_-	lipoprotein	NA	NA	NA	NA
SQI37941.1\|2315091_2315541_-	Argininosuccinate synthase	NA	NA	NA	NA
SQI37942.1\|2316257_2316875_+	nicotinamidase/pyrazinamidase	NA	NA	NA	NA
SQI37947.1\|2317048_2317867_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A1W6JP20	Morganella_phage	5.5e-63	62.8
SQI37948.1\|2317982_2319206_-\|portal	phage portal protein, HK97 family	A0A1W6JP33	Morganella_phage	5.4e-208	87.3
SQI37949.1\|2319195_2319357_-	Uncharacterised protein	A0A1W6JP78	Morganella_phage	3.2e-15	71.7
SQI37950.1\|2319353_2320145_-\|terminase	Phage terminase-like protein, large subunit	A0A1W6JP18	Morganella_phage	4.1e-132	83.3
SQI37951.1\|2320281_2321043_-\|terminase	Phage terminase-like protein, large subunit	A0A1P8DTK0	Proteus_phage	3.1e-129	92.6
SQI37952.1\|2321065_2321356_-\|terminase	Phage terminase, small subunit	A0A1P8DTK5	Proteus_phage	5.0e-35	75.0
SQI37953.1\|2321695_2322049_-	HNH endonuclease	A0A1W6JP27	Morganella_phage	4.5e-54	82.8
SQI37954.1\|2322474_2322903_+	Uncharacterised protein	NA	NA	NA	NA
SQI37955.1\|2323236_2323467_-	Uncharacterised protein	NA	NA	NA	NA
SQI37956.1\|2323447_2323693_-	Uncharacterised protein	NA	NA	NA	NA
SQI37957.1\|2323908_2324286_-	Uncharacterised protein	NA	NA	NA	NA
SQI37958.1\|2324344_2324914_-	Phage-related lysozyme (muraminidase)	A0A1W6JNW4	Morganella_phage	4.7e-53	62.7
SQI37959.1\|2324894_2325098_-	Uncharacterised protein	A0A1W6JNY9	Morganella_phage	1.0e-18	73.3

DBSCAN-SWA_10

2329059 : 2376139

Cronobacter_phage(18.75%)

tail,integrase

attL 2325840:2325855|attR 2382214:2382229

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2325840:2325855	attL	NA	NA	NA	NA
SQI37967.1\|2329059_2329767_-	Antitermination protein	F1C595	Cronobacter_phage	1.1e-56	48.7
SQI37968.1\|2329884_2330322_-	Protein of uncharacterised function (DUF968)	A0A1W6JP62	Morganella_phage	2.7e-24	64.0
SQI37969.1\|2330335_2330713_-	Crossover junction endodeoxyribonuclease rusA	A5LH74	Enterobacteria_phage	1.3e-30	52.3
SQI37970.1\|2330709_2330943_-	Uncharacterised protein	NA	NA	NA	NA
SQI37971.1\|2331140_2331548_-	Uncharacterised protein	U5P0A0	Shigella_phage	5.9e-26	48.1
SQI37972.1\|2331724_2331826_+	Uncharacterised protein	NA	NA	NA	NA
SQI37973.1\|2332018_2332261_+	Excisionase-like protein	NA	NA	NA	NA
SQI37974.1\|2332241_2333369_+	Site-specific recombinase XerC	O21925	Phage_21	2.1e-129	62.0
SQI37975.1\|2333365_2333530_-	Uncharacterised protein	NA	NA	NA	NA
SQI38033.1\|2333875_2334652_-	Uncharacterised protein	NA	NA	NA	NA
SQI38036.1\|2334825_2334978_-	Isocitrate dehydrogenase [NADP]	Q77Z09	Phage_21	7.6e-19	92.0
SQI38037.1\|2335132_2336650_-	Uncharacterised protein	A0A1S6KUV1	Providencia_phage	1.8e-35	33.9
SQI38038.1\|2336715_2337732_-	Uncharacterised protein	NA	NA	NA	NA
SQI38039.1\|2337728_2341034_-	Domain of uncharacterised function (DUF1983)	A0A1P8DTI4	Proteus_phage	0.0e+00	53.0
SQI38040.1\|2341089_2341692_-\|tail	Phage-related protein, tail component	F1C572	Cronobacter_phage	5.1e-58	62.1
SQI38041.1\|2341688_2342399_-	NlpC/P60 family	F1C573	Cronobacter_phage	2.0e-85	65.2
SQI38042.1\|2342395_2343139_-\|tail	phage minor tail protein L	F1C574	Cronobacter_phage	1.2e-85	58.0
SQI38043.1\|2343135_2343480_-	Phage-related protein	I6PBN7	Cronobacter_phage	1.8e-23	46.4
SQI38044.1\|2343518_2346455_-\|tail	Phage-related minor tail protein	K7PMB9	Enterobacterial_phage	2.2e-130	35.1
SQI38045.1\|2346516_2347095_-	Uncharacterised protein	I6PDJ9	Cronobacter_phage	4.3e-22	58.9
SQI38046.1\|2347182_2347455_-	Uncharacterised protein	K4FJF8	Escherichia_phage	1.0e-10	46.3
SQI38047.1\|2347484_2347640_-	Domain of uncharacterised function (DUF1789)	NA	NA	NA	NA
SQI38048.1\|2347587_2347788_-	Domain of uncharacterised function (DUF1789)	NA	NA	NA	NA
SQI38049.1\|2347824_2348478_-\|tail	Phage tail protein	G8C7Q3	Escherichia_phage	2.0e-60	56.4
SQI38050.1\|2348526_2348928_-	Uncharacterised protein	NA	NA	NA	NA
SQI38051.1\|2348924_2349074_-	Uncharacterised protein	I6PCW1	Cronobacter_phage	2.2e-10	57.1
SQI38052.1\|2349048_2349492_-	Uncharacterised protein	G8C7Q1	Escherichia_phage	2.1e-32	49.3
SQI38053.1\|2349508_2349862_-	Uncharacterised protein	I6PD77	Cronobacter_phage	5.5e-20	43.0
SQI38054.1\|2349864_2350347_-	Uncharacterised protein	G8C7P9	Escherichia_phage	4.3e-31	48.0
SQI38055.1\|2350385_2351345_-	Uncharacterised protein	A0A1B0VMF8	Pseudomonas_phage	2.2e-132	73.0
SQI38056.1\|2351357_2352134_-	Uncharacterised protein	A0A1B0VMG1	Pseudomonas_phage	1.1e-60	55.8
SQI38058.1\|2352249_2353371_-	Uncharacterised protein	I6PD76	Cronobacter_phage	1.1e-98	49.2
SQI38060.1\|2353367_2354738_-	Uncharacterised protein	A0A1B0VMH0	Pseudomonas_phage	8.7e-122	48.9
SQI38062.1\|2354737_2355664_-	Uncharacterized conserved protein	A0A2P1MXD8	Escherichia_phage	7.0e-91	55.6
SQI38064.1\|2355707_2356043_-	Terminase-like family	A0A1B1P9C9	Acinetobacter_phage	3.7e-42	70.8
SQI38066.1\|2356042_2357011_-	Terminase small subunit	C5IHM0	Burkholderia_virus	9.1e-33	38.2
SQI38068.1\|2357072_2357642_-	Uncharacterised protein	K7PHH7	Enterobacteria_phage	7.3e-30	53.6
SQI38070.1\|2357613_2358096_-	Uncharacterised protein	A0A1U9ZAE8	Proteus_phage	3.7e-67	76.9
SQI38072.1\|2358092_2358461_-	Uncharacterised protein	NA	NA	NA	NA
SQI38076.1\|2358460_2358874_-	Uncharacterised protein	NA	NA	NA	NA
SQI38078.1\|2358958_2359189_-	Uncharacterised protein	NA	NA	NA	NA
SQI38080.1\|2359607_2359931_-	Protein of uncharacterised function (DUF1133)	A0A0U2S606	Escherichia_phage	2.2e-15	51.2
SQI38082.1\|2359965_2360280_-	Protein of uncharacterised function (DUF968)	A0A1I9KFA7	Aeromonas_phage	1.9e-32	67.7
SQI38084.1\|2360291_2361155_-	PUA domain (predicted RNA-binding domain)	A0A2H4J5Y9	uncultured_Caudovirales_phage	5.4e-85	48.6
SQI38085.1\|2361169_2361763_-	Protein of uncharacterised function (DUF1367)	H9C173	Pectobacterium_phage	9.5e-65	59.2
SQI38087.1\|2361988_2362321_-	Uncharacterised protein	NA	NA	NA	NA
SQI38089.1\|2362367_2362640_-	Uncharacterised protein	NA	NA	NA	NA
SQI38093.1\|2362667_2363009_-	Uncharacterised protein	H9C172	Pectobacterium_phage	6.5e-34	61.1
SQI38098.1\|2363036_2363207_-	Uncharacterised protein	NA	NA	NA	NA
SQI38100.1\|2363320_2363557_-	Uncharacterised protein	NA	NA	NA	NA
SQI38103.1\|2363559_2363733_-	Uncharacterised protein	NA	NA	NA	NA
SQI38105.1\|2363753_2365124_-	Replicative DNA helicase	Q76H51	Enterobacteria_phage	3.6e-99	46.0
SQI38107.1\|2365120_2365711_-	DNA replication protein dnaC	K7PLU3	Enterobacteria_phage	1.4e-44	47.6
SQI38110.1\|2365703_2366555_-	Uncharacterised protein	Q8W642	Enterobacteria_phage	1.4e-32	62.7
SQI38113.1\|2366556_2366781_-	Uncharacterised protein	H9C163	Pectobacterium_phage	1.2e-15	55.4
SQI38116.1\|2366798_2367254_-	Protein of uncharacterised function (DUF1019)	H9C162	Pectobacterium_phage	9.2e-28	50.7
SQI38120.1\|2367301_2367550_-	Helix-turn-helix	NA	NA	NA	NA
SQI38122.1\|2367653_2368406_+	Plasmid maintenance system antidote protein	A0A0M3LPF9	Mannheimia_phage	7.6e-27	36.4
SQI38124.1\|2368870_2369203_+	Uncharacterised protein	NA	NA	NA	NA
SQI38126.1\|2369215_2370571_+	exonuclease VIII	H9C157	Pectobacterium_phage	1.5e-52	31.9
SQI38129.1\|2370551_2371223_+	Uncharacterised protein	H9C157	Pectobacterium_phage	3.4e-63	58.9
SQI38131.1\|2371222_2371723_+	Siphovirus Gp157	H9C156	Pectobacterium_phage	4.3e-42	58.9
SQI38132.1\|2371767_2371947_+	Uncharacterised protein	NA	NA	NA	NA
SQI38135.1\|2371972_2372203_+	Uncharacterised protein	A0A2H4JCC5	uncultured_Caudovirales_phage	2.7e-12	59.7
SQI38136.1\|2372199_2372793_+	Uncharacterised protein	NA	NA	NA	NA
SQI38137.1\|2372786_2372954_+	Uncharacterised protein	NA	NA	NA	NA
SQI38138.1\|2372953_2373124_+	Uncharacterised protein	NA	NA	NA	NA
SQI38139.1\|2373196_2373403_+	Uncharacterised protein	H9C154	Pectobacterium_phage	5.9e-06	46.7
SQI38140.1\|2373402_2373654_+	Uncharacterised protein	NA	NA	NA	NA
SQI38141.1\|2373628_2374321_+\|integrase	Bacteriophage lambda integrase, N-terminal domain	Q77Z04	Phage_21	1.4e-67	69.1
SQI38142.1\|2374283_2374763_+\|integrase	Phage integrase family	O21925	Phage_21	3.5e-70	78.0
SQI38143.1\|2374741_2374933_+	Uncharacterised protein	NA	NA	NA	NA
SQI38144.1\|2374885_2376139_-	Isocitrate dehydrogenase [NADP]	Q77Z09	Phage_21	6.7e-20	90.7
2382214:2382229	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2489960 : 2494487

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI38256.1\|2489960_2491613_+	Dimethyl sulfoxide reductase DmsA precursor	A0A077SK27	Escherichia_phage	1.7e-159	54.1
SQI38257.1\|2491569_2492391_+	Dimethyl sulfoxide reductase DmsA precursor	A0A077SK27	Escherichia_phage	1.8e-90	55.1
SQI38258.1\|2492402_2492537_+	DMSO reductase iron-sulfur subunit	A0A077SL61	Escherichia_phage	3.1e-16	81.4
SQI38259.1\|2492523_2493021_+	DMSO reductase iron-sulfur subunit	A0A077SL61	Escherichia_phage	6.7e-64	64.6
SQI38260.1\|2493022_2493799_+	DMSO reductase anchor subunit	A0A077SK59	Escherichia_phage	1.3e-37	39.6
SQI38261.1\|2493887_2494487_+	Twin-arginine leader-binding protein DmsD	A0A077SLS7	Escherichia_phage	2.7e-43	48.7

DBSCAN-SWA_12

2508954 : 2548096

Bacteriophage(20.0%)

head,terminase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI38283.1\|2508954_2509200_+	DinI-like family	Q6K1F1	Salmonella_virus	1.4e-06	32.5
SQI38290.1\|2509196_2509505_+	Uncharacterised protein	NA	NA	NA	NA
SQI38293.1\|2509627_2511166_+	Putative phosphoethanolamine transferase ybiP	NA	NA	NA	NA
SQI38295.1\|2511196_2512495_-	Uncharacterised protein	A0A0H3UDV7	Escherichia_phage	1.4e-28	37.7
SQI38298.1\|2512500_2513160_-	Protein of uncharacterised function (DUF2612)	Q6IWQ4	Burkholderia_phage	4.0e-40	40.7
SQI38301.1\|2513156_2514344_-	Uncharacterized homolog of phage Mu protein gp47	A0A2H5BG53	Pseudoalteromonas_phage	5.1e-78	38.9
SQI38304.1\|2514336_2514681_-	Uncharacterised protein	Q6IWQ2	Burkholderia_phage	1.6e-11	33.9
SQI38305.1\|2514677_2515370_-	Uncharacterised protein	A0A2H4P6V3	Pseudomonas_phage	6.1e-31	39.4
SQI38308.1\|2515412_2516228_-	Uncharacterised protein	Q6IWQ0	Burkholderia_phage	2.8e-43	38.6
SQI38312.1\|2516220_2516514_-	Uncharacterised protein	NA	NA	NA	NA
SQI38314.1\|2516516_2517044_-	Uncharacterised protein	NA	NA	NA	NA
SQI38317.1\|2517040_2519173_-	Uncharacterised protein	A0A2H5BG44	Pseudoalteromonas_phage	3.5e-16	24.1
SQI38319.1\|2519255_2519714_-	Uncharacterised protein	Q6IWV4	Burkholderia_phage	1.9e-25	50.3
SQI38321.1\|2519763_2520216_-	Uncharacterised protein	I7ATP4	Escherichia_phage	8.0e-24	38.9
SQI38322.1\|2520226_2521489_-	Protein of uncharacterised function (DUF3383)	A0A088C3U1	Shewanella_sp._phage	3.2e-62	35.6
SQI38325.1\|2521485_2521713_-	Uncharacterised protein	NA	NA	NA	NA
SQI38330.1\|2521722_2522238_-	Uncharacterised protein	NA	NA	NA	NA
SQI38331.1\|2522325_2522598_-	Uncharacterised protein	NA	NA	NA	NA
SQI38332.1\|2522597_2523056_-	Uncharacterised protein	A0A2H4J488	uncultured_Caudovirales_phage	7.4e-09	35.6
SQI38333.1\|2523055_2523490_-	Uncharacterised protein	Q6IWU8	Burkholderia_phage	2.0e-11	34.5
SQI38334.1\|2523489_2523831_-	Uncharacterised protein	Q6IWU7	Burkholderia_phage	2.1e-08	35.8
SQI38335.1\|2523886_2524954_-	Uncharacterized protein conserved in bacteria	A0A088C493	Shewanella_sp._phage	7.9e-54	39.6
SQI38336.1\|2524953_2525451_-	Uncharacterised protein	NA	NA	NA	NA
SQI38337.1\|2525450_2526707_-	Uncharacterized protein conserved in bacteria	A0A2H5BG39	Pseudoalteromonas_phage	2.7e-37	45.6
SQI38338.1\|2526703_2527417_-\|head	phage head morphogenesis protein, SPP1 gp7 family	A0A088C492	Shewanella_sp._phage	9.1e-38	38.7
SQI38339.1\|2527439_2528957_-	phage-associated protein, HI1409 family	A0A2H4P6S9	Pseudomonas_phage	4.8e-105	45.3
SQI38340.1\|2528961_2530197_-\|terminase	phage terminase, large subunit, PBSX family	A0A1V0E5Q3	Salmonella_phage	1.2e-178	72.2
SQI38341.1\|2530189_2530741_-	Terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	6.7e-57	62.5
SQI38342.1\|2530818_2531280_-\|lysis	Bacteriophage lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	2.9e-13	42.6
SQI38343.1\|2531288_2531462_-	Uncharacterised protein	NA	NA	NA	NA
SQI38344.1\|2531443_2531914_-	Phage-related lysozyme (muraminidase)	A0A1W6JNW4	Morganella_phage	1.9e-47	57.2
SQI38345.1\|2531913_2532183_-	Uncharacterised protein	A0A2H4FNF0	Salmonella_phage	1.3e-24	65.6
SQI38346.1\|2532380_2532497_+	Uncharacterised protein	NA	NA	NA	NA
SQI38347.1\|2532503_2532968_+	Uncharacterised protein	NA	NA	NA	NA
SQI38350.1\|2533004_2533325_-	Uncharacterised protein	NA	NA	NA	NA
SQI38353.1\|2533654_2534086_-	Phage antitermination protein Q	K7PGW2	Enterobacterial_phage	9.1e-17	42.1
SQI38354.1\|2534349_2536608_-	Predicted P-loop ATPase and inactivated derivatives	Q9T1U5	Acyrthosiphon_pisum_secondary_endosymbiont_phage	0.0e+00	70.9
SQI38356.1\|2536611_2536812_-	Uncharacterised protein	K7ST61	Bacteriophage	1.8e-07	46.6
SQI38361.1\|2536949_2537624_+	Uncharacterized HTH-type transcriptional regulator CBU_1416	B6SCU0	Bacteriophage	6.7e-59	50.2
SQI38364.1\|2537990_2538482_-	Uncharacterised protein	K7P861	Enterobacteria_phage	6.3e-30	43.0
SQI38367.1\|2538810_2539431_+	Uncharacterised protein	K7PKU5	Enterobacteria_phage	1.1e-42	46.6
SQI38369.1\|2539459_2539594_+	Uncharacterised protein	NA	NA	NA	NA
SQI38371.1\|2539603_2540359_+	Uncharacterised protein	Q3LZP9	Bacteriophage	4.0e-28	39.4
SQI38382.1\|2540359_2541646_+	Protein of uncharacterised function (DUF2800)	B6SCX9	Bacteriophage	1.9e-155	63.4
SQI38383.1\|2541661_2542213_+	Protein of uncharacterised function (DUF2815)	Q3LZQ2	Bacteriophage	1.8e-65	69.4
SQI38389.1\|2542204_2542771_-	Uncharacterised protein	NA	NA	NA	NA
SQI38392.1\|2542793_2544851_+	DNA polymerase I, thermostable	Q775A3	Bordetella_phage	6.5e-262	65.2
SQI38395.1\|2544922_2545114_-	Uncharacterised protein	NA	NA	NA	NA
SQI38396.1\|2545220_2545448_+	Uncharacterised protein	NA	NA	NA	NA
SQI38400.1\|2545431_2545701_+	VRR-NUC domain	Q3LZN4	Bacteriophage	6.6e-34	76.4
SQI38410.1\|2545753_2546611_+	Uncharacterised protein	NA	NA	NA	NA
SQI38424.1\|2546704_2548096_+	SNF2 family N-terminal domain	Q3LZN8	Bacteriophage	3.3e-225	79.3

DBSCAN-SWA_13

2791819 : 2804588

Cronobacter_phage(44.44%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI39249.1\|2791819_2792302_+	Small protein B	W5RAM5	Staphylococcus_phage	1.8e-29	46.8
SQI39250.1\|2793148_2793361_+	Helix-turn-helix domain	NA	NA	NA	NA
SQI39251.1\|2793783_2794053_+	Uncharacterised protein	NA	NA	NA	NA
SQI39252.1\|2794119_2794359_-	Helix-turn-helix	A0A1W6JNW5	Morganella_phage	5.8e-05	37.3
SQI39253.1\|2794591_2794891_+	10K-L protein	NA	NA	NA	NA
SQI39254.1\|2795218_2798881_-	Fibronectin type III protein	A0A1P8DTI4	Proteus_phage	0.0e+00	50.6
SQI39255.1\|2798941_2799547_-\|tail	Phage-related protein, tail component	F1C572	Cronobacter_phage	3.9e-58	62.0
SQI39256.1\|2799543_2800254_-	NlpC/P60 family	F1C573	Cronobacter_phage	5.8e-85	64.8
SQI39257.1\|2800250_2800994_-\|tail	phage minor tail protein L	F1C574	Cronobacter_phage	2.3e-84	57.8
SQI39258.1\|2800990_2801335_-	Phage-related protein	E4WL34	Enterobacteria_phage	5.9e-19	39.8
SQI39259.1\|2801397_2801610_-	Uncharacterised protein	NA	NA	NA	NA
SQI39260.1\|2801642_2804069_-\|tail	Phage-related minor tail protein	K7PMB9	Enterobacterial_phage	5.7e-116	34.7
SQI39261.1\|2804086_2804230_-	Uncharacterised protein	NA	NA	NA	NA
SQI39262.1\|2804246_2804588_-	Uncharacterised protein	I6PCW3	Cronobacter_phage	5.7e-14	38.7

DBSCAN-SWA_14

2808468 : 2824565

Morganella_phage(23.53%)

tail,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI39268.1\|2808468_2809731_-	DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	6.0e-194	79.5
SQI39269.1\|2809730_2810144_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	1.6e-50	73.9
SQI39270.1\|2810591_2811110_-	Uncharacterised protein	A0A0A0YPL5	Citrobacter_virus	2.1e-20	34.2
SQI39271.1\|2811228_2811882_-\|tail	Phage tail protein	G8C7Q3	Escherichia_phage	4.8e-62	57.3
SQI39285.1\|2811931_2812333_-	Uncharacterised protein	NA	NA	NA	NA
SQI39286.1\|2812333_2812912_-	Uncharacterised protein	G8C7Q1	Escherichia_phage	1.2e-51	56.1
SQI39287.1\|2812913_2813264_-	Uncharacterised protein	I6PD77	Cronobacter_phage	1.2e-19	44.2
SQI39288.1\|2813266_2813749_-	Uncharacterised protein	G8C7P9	Escherichia_phage	3.3e-31	45.3
SQI39289.1\|2813832_2814798_-	Uncharacterised protein	A0A1B0VMF8	Pseudomonas_phage	1.2e-125	71.2
SQI39290.1\|2814811_2815447_-	Uncharacterised protein	A0A1B0VMG1	Pseudomonas_phage	1.5e-60	58.4
SQI39291.1\|2815452_2815587_-	Uncharacterised protein	NA	NA	NA	NA
SQI39292.1\|2815699_2815918_-	Uncharacterised protein	G8C7P5	Escherichia_phage	3.8e-11	44.8
SQI39293.1\|2815959_2816553_-	Uncharacterised protein	I6PD76	Cronobacter_phage	1.1e-44	52.6
SQI39294.1\|2816530_2816821_-	Uncharacterised protein	NA	NA	NA	NA
SQI39301.1\|2816817_2818188_-	Uncharacterised protein	A0A1B0VMH0	Pseudomonas_phage	4.6e-123	49.8
SQI39305.1\|2818187_2819675_-	Uncharacterised protein	A0A1W6JNY3	Morganella_phage	3.2e-263	88.4
SQI39308.1\|2819677_2820280_-	Uncharacterised protein	A0A077KBY7	Edwardsiella_phage	5.3e-63	66.0
SQI39312.1\|2820748_2821264_-	Outer membrane lipoprotein blc precursor	A0A1W6JNX6	Morganella_phage	7.6e-79	80.1
SQI39354.1\|2821734_2821866_+	entericidin B membrane lipoprotein	NA	NA	NA	NA
SQI39370.1\|2822052_2822286_+	Protein of uncharacterised function (DUF1161)	NA	NA	NA	NA
SQI39371.1\|2823134_2823347_+	Uncharacterised protein	NA	NA	NA	NA
SQI39373.1\|2823460_2823922_-\|lysis	Bacteriophage lysis protein	A0A1P8DTG0	Proteus_phage	9.1e-31	54.7
SQI39374.1\|2823992_2824565_-	Phage-related lysozyme (muraminidase)	A0A1R3Y5W5	Salmonella_virus	7.0e-49	61.2

DBSCAN-SWA_15

2829837 : 2843795

Proteus_phage(38.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI39386.1\|2829837_2830218_-	Phage antitermination protein Q	A0A0P0ZGJ3	Escherichia_phage	1.3e-46	69.6
SQI39387.1\|2830221_2830452_-	Phage NinH protein	NA	NA	NA	NA
SQI39388.1\|2830502_2830961_-	Bacteriophage Lambda NinG protein	C6ZR60	Salmonella_phage	1.2e-64	76.2
SQI39389.1\|2831174_2831447_-	Uncharacterised protein	A0A2I7R9W3	Vibrio_phage	6.8e-10	40.8
SQI39390.1\|2831812_2832043_-	Uncharacterised protein	NA	NA	NA	NA
SQI39391.1\|2832054_2832228_-	Uncharacterised protein	NA	NA	NA	NA
SQI39392.1\|2832254_2832389_-	Uncharacterised protein	A0A1P8DTF3	Proteus_phage	4.2e-05	54.5
SQI39393.1\|2832415_2832928_-	Replication protein P	A0A1P8DTF3	Proteus_phage	3.0e-43	88.1
SQI39394.1\|2832924_2833875_-	phage replication protein O, N-terminal domain	A0A1P8DTG2	Proteus_phage	4.4e-72	49.7
SQI39395.1\|2833942_2834269_-	Uncharacterised protein	A0A1W6JNY4	Morganella_phage	1.9e-43	79.6
SQI39396.1\|2834400_2834610_-	transcriptional regulator, y4mF family	K7PKH4	Enterobacteria_phage	3.3e-25	78.3
SQI39397.1\|2834717_2835362_+	Uncharacterized HTH-type transcriptional regulator CBU_1416	K7PH19	Enterobacteria_phage	5.8e-76	63.3
SQI39398.1\|2835371_2835713_+	Protein of uncharacterised function (DUF3024)	A0A1W6JP12	Morganella_phage	1.4e-36	60.2
SQI39399.1\|2835896_2836322_+	Uncharacterised protein	NA	NA	NA	NA
SQI39400.1\|2836318_2837074_+	Domain of uncharacterised function DUF1828	NA	NA	NA	NA
SQI39401.1\|2837148_2837382_+	Putative hemolysin	NA	NA	NA	NA
SQI39402.1\|2837581_2838106_+	Uncharacterised protein	A0A1W6JNZ0	Morganella_phage	6.2e-36	54.7
SQI39403.1\|2838149_2838359_+	Uncharacterised protein	NA	NA	NA	NA
SQI39404.1\|2838484_2838703_+	Uncharacterised protein	NA	NA	NA	NA
SQI39405.1\|2838699_2838912_-	Uncharacterised protein	NA	NA	NA	NA
SQI39406.1\|2839056_2839281_+	Uncharacterised protein	NA	NA	NA	NA
SQI39407.1\|2839388_2839571_+	Uncharacterised protein	A0A1P8DTH8	Proteus_phage	5.3e-19	80.0
SQI39408.1\|2839512_2839689_+	Uncharacterised protein	A0A1P8DTG5	Proteus_phage	2.0e-10	57.9
SQI39409.1\|2839698_2839866_+	Uncharacterised protein	NA	NA	NA	NA
SQI39410.1\|2839862_2840696_+	Exodeoxyribonuclease 8	A0A1P8DTH1	Proteus_phage	9.3e-135	82.0
SQI39411.1\|2840673_2841480_+	P33	A0A1P8DTF2	Proteus_phage	1.2e-126	84.6
SQI39412.1\|2841469_2841925_+	Helix-destabilizing protein	A0A1W6JNW8	Morganella_phage	1.9e-44	64.0
SQI39413.1\|2842016_2842199_+	Uncharacterised protein	NA	NA	NA	NA
SQI39414.1\|2842437_2842659_+	Uncharacterised protein	I6PBM8	Cronobacter_phage	2.2e-19	61.8
SQI39415.1\|2842613_2843795_+	Tyrosine recombinase XerC	I6PDJ1	Cronobacter_phage	2.2e-150	68.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483467

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection