CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483475	Salmonella enterica subsp. salamae serovar Greenside strain NCTC9936 genome assembly, chromosome: 1	2 crisprs	PD-DExK,cas3,csa3,DEDDh,DinG,c2c9_V-U4,cas14i	1	14	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483475_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483475_2

974524-974981

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCTAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCGG	CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRT

7 spacers

cas3

The CRISPR arrays of LS483475_2

>merge|LS483475|2|974524-974981|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCGCCGTTATTGGTGATAGTGGCTGTCTGGTAGTCGTGTTCCCCGCGCTAGCGGGGATAAACCGTAAAAGGGGATACCAGTCATATCGCATACCAGAGTGTTCCCCGCGCTAGCGGGGATAAACCGGTATCCTTGGCATCCATTAGCGTCATGCCTTCGTGTTCCCCGCGCTAGCGGGGATAAACCGGAAGGCGACAAAAAACAGCCGTATTTCATTCAGTGTTCCCCGCGCTAGCGGGGATAAACCGGCATCAGCGACCCGAACGATCCGAAATGGGTTGTGTTCCCCGCGCTAGCGGGGATAAACCGGCATCCGCAGGTATCGCTGGAGCAATGGCGATGTGTTCCCCGCGCTAGCGGGGATAAACCGTGATAGTTGGAATTTCTGCTAACGATAGTGATGTGTTCCCCGCGCTAGCGGGGATAGCCGTT

>LS483475|2|1|974524-974919|PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGTTATTGGTGATAGTGGCTGTCTGGTAGTC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAAAAGGGGATACCAGTCATATCGCATACCAGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTATCCTTGGCATCCATTAGCGTCATGCCTTC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GAAGGCGACAAAAAACAGCCGTATTTCATTCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCATCAGCGACCCGAACGATCCGAAATGGGTT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCATCCGCAGGTATCGCTGGAGCAATGGCGAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG

>LS483475|2|2|974524-974981|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACCGC	CGTTATTGGTGATAGTGGCTGTCTGGTAGTC
GTGTTCCCCGCGCTAGCGGGGATAAACCGT	AAAAGGGGATACCAGTCATATCGCATACCAGA
GTGTTCCCCGCGCTAGCGGGGATAAACCGG	TATCCTTGGCATCCATTAGCGTCATGCCTTC
GTGTTCCCCGCGCTAGCGGGGATAAACCGG	AAGGCGACAAAAAACAGCCGTATTTCATTCA
GTGTTCCCCGCGCTAGCGGGGATAAACCGG	CATCAGCGACCCGAACGATCCGAAATGGGTT
GTGTTCCCCGCGCTAGCGGGGATAAACCGG	CATCCGCAGGTATCGCTGGAGCAATGGCGAT
GTGTTCCCCGCGCTAGCGGGGATAAACCGT	GATAGTTGGAATTTCTGCTAACGATAGTGAT
GTGTTCCCCGCGCTAGCGGGGATAGCCGTT

>LS483475|2|1|974524-974980|CRT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CCGTTATTGGTGATAGTGGCTGTCTGGTAGTC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TAAAAGGGGATACCAGTCATATCGCATACCAGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTATCCTTGGCATCCATTAGCGTCATGCCTTC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GAAGGCGACAAAAAACAGCCGTATTTCATTCA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCATCAGCGACCCGAACGATCCGAAATGGGTT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GCATCCGCAGGTATCGCTGGAGCAATGGCGAT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TGATAGTTGGAATTTCTGCTAACGATAGTGAT
GTGTTCCCCGCGCTAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483475.1\|SQI53725.1\|972120_973419_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483475.1\|SQI53707.1\|965397_968043_-\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
LS483475.1\|SQI53734.1\|975077_975875_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483475.1\|SQI53746.1\|980374_981109_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483475.1\|SQI53693.1\|963067_963559_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185168
LS483475.1\|SQI53751.1\|981196_982150_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483475.1\|SQI53714.1\|969372_970173_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483475.1\|SQI53753.1\|982533_983550_-\|helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
LS483475.1\|SQI53703.1\|964611_965385_-\|chaperone-protein-PapD	unknown	unknown	gnl\|CDD\|185177
LS483475.1\|SQI53699.1\|964085_964586_-\|Protein-sfmH-Flags:-Precursor	unknown	unknown	gnl\|CDD\|185178
LS483475.1\|SQI53711.1\|968176_968764_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185169
LS483475.1\|SQI53763.1\|985935_987375_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483475.1\|SQI53740.1\|976754_978554_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483475.1\|SQI53719.1\|970400_972038_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483475.1\|SQI53737.1\|975964_976327_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483475.1\|SQI53743.1\|978553_980266_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483475.1\|SQI53696.1\|963600_964086_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185179
LS483475.1\|SQI53756.1\|983720_984767_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483475.1\|SQI53760.1\|985017_985926_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483475.1\|SQI53730.1\|973555_974227_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126

Protein	Function_ID	Function_description	E-value
LS483475.1\|SQI53725.1\|972120_973419_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483475.1\|SQI53707.1\|965397_968043_-\|outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
LS483475.1\|SQI53734.1\|975077_975875_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	3.17146e-99
LS483475.1\|SQI53746.1\|980374_981109_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	8.83119e-137
LS483475.1\|SQI53693.1\|963067_963559_-\|fimbrial-subunit	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	4.15841e-105
LS483475.1\|SQI53751.1\|981196_982150_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483475.1\|SQI53714.1\|969372_970173_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	4.05856e-159
LS483475.1\|SQI53753.1\|982533_983550_-\|helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.27842e-48
LS483475.1\|SQI53703.1\|964611_965385_-\|chaperone-protein-PapD	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
LS483475.1\|SQI53699.1\|964085_964586_-\|Protein-sfmH-Flags:-Precursor	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	6.6983e-104
LS483475.1\|SQI53711.1\|968176_968764_-\|fimbrial-subunit	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
LS483475.1\|SQI53763.1\|985935_987375_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483475.1\|SQI53740.1\|976754_978554_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483475.1\|SQI53719.1\|970400_972038_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483475.1\|SQI53737.1\|975964_976327_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.25945e-57
LS483475.1\|SQI53743.1\|978553_980266_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483475.1\|SQI53696.1\|963600_964086_-\|fimbrial-subunit	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	4.75597e-99
LS483475.1\|SQI53756.1\|983720_984767_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483475.1\|SQI53760.1\|985017_985926_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483475.1\|SQI53730.1\|973555_974227_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155

>LS483475.1|SQI53730.1|973555_974227_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483475.1|SQI53725.1|972120_973419_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483475.1|SQI53719.1|970400_972038_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LS483475.1|SQI53714.1|969372_970173_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNNQINRLLTLMQRLRDPEGGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483475.1|SQI53711.1|968176_968764_-|fimbrial-subunit
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>LS483475.1|SQI53707.1|965397_968043_-|outer-membrane-usher-protein
MLLSASPYSASGKDIKFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSMKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQIHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETVKVFWDGAAQCEASLPPTFTPELLANPLLLPCKMLEGQPHTAPQKAAPLPAQPLIQEHTQTEGQPAAPVATTTQTPPIPLADNHAVNRKDME
>LS483475.1|SQI53703.1|964611_965385_-|chaperone-protein-PapD
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVAQQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>LS483475.1|SQI53699.1|964085_964586_-|Protein-sfmH-Flags:-Precursor
MLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLSCDGRASDYLKLQIQGTTTTINGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>LS483475.1|SQI53696.1|963600_964086_-|fimbrial-subunit
MERFIVKRGLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTPTPYSAKALTTNVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>LS483475.1|SQI53693.1|963067_963559_-|fimbrial-subunit
MLWAVCNTLLAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLKDCKTALANGVLVTFQGVEDSTLPGLLALEPSSAASGFAIGVETAAQQPVSINATEGTAFVLKEGVTTINFQARLQKYAGEDVMPGEFKGTATVSFEYQ
>LS483475.1|SQI53734.1|975077_975875_+|beta-lactamase
MALTIRVLLENHKGAGADKLLRARPGLSLLVQDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRRIKKLSREVDYSRYRMVYTRDPLPISENFIWSGEIPVVAPETYGIVGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKQIYALIGGFHLRCASPLTLWRVRRFLQEQKTEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483475.1|SQI53737.1|975964_976327_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVIVKETCTAGCVYRGE
>LS483475.1|SQI53740.1|976754_978554_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMTGITLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVMVTSTQGEGEPPEEAVALHKFLFSKKAPTLNDTAFAVFSLGDTSYEFFCQAGKDFDNKLAELGGERLLDRVDADVEYQTAAAQWRARVVDVLKSRTPVVTPAQPVASGAVNEIHTSPYTKEAPLRASLSLNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDSKLLPLAEALQWHCELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAAATPIVDMVRFSPAQLDADALVGLLRPLTPRLYSIASSQAEVENEVHLTVGVVRYDIEGRARAGGASSFLADRIEDDGEVRVFIEHNDNFRLPTNPETPVIMIGPGTGIAPFRAFMQQRAAEDAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LS483475.1|SQI53743.1|978553_980266_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTSQWQAIDKFAADNTLYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGRLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIVASVPESQKAKIEKLARDHGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFVDKVEAVMAKHGVGDEHIVLRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483475.1|SQI53746.1|980374_981109_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNVLNDLPKVDRILALAEANAELETLTAEERVTWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALQELNAQTWFAGLRREQSGSRAHLPVLAIQRGIFKVLPIIDWDNRTVYQYLQKKGLKYHPLWDHGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483475.1|SQI53751.1|981196_982150_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHHNYTLNESRLAHLLSADKEKATHMGKWDKVQDHFRAEKKDHALDVLYAIIHGQGRGEPGEMEVNVEDMGKIYAFKRLQNLACPAHQDLFNIKMDASQTQFLFMVGDTVISQSKIQDILNISDNAMVASMSREERQLFLRICEMIGATMTWHPELLQGSVSTLRKEVTSNAQIKAAVYEMMRPAEAPDHQFIEWQDTLTEDEKSMLACINAGNFDAITQFCKIGYREVQGEVAFSMVHPCLSYLLHTYSPLAEFKETNAGFLNKLNQDYNDYHANKMFIDVILENIYLMHERTLHIGKNGCSRNILLA
>LS483475.1|SQI53753.1|982533_983550_-|helicase-Cas3
MATGQCICWIRNTVDDALDTYQQLLHEGIVPDQDILLFHSRFAFTDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDGRQPPVLHILAPHWQEQAEEGWLGQELKSTGFVYADHACLWRTQALLRQYGEIRMPDNARALVDGVYEQRIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRYHRPSGQIVLVSDTGEASYYSKRFGLVG
>LS483475.1|SQI53756.1|983720_984767_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFTVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGMSVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483475.1|SQI53760.1|985017_985926_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTASAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483475.1|SQI53763.1|985935_987375_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNIAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIETIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVREPVKRGVTPPVEYSAFELELNALVRRHFPHWDARDLLGGKHGAA

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Crispr_ID: LS483475_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483475_4

2172023-2172661

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGAGAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CRT

10 spacers

The CRISPR arrays of LS483475_4

>merge|LS483475|4|2172023-2172661|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGAGAGCGGGGATAAACCGCGATCCAAGACTCATGGCGTATTTCGTCCTCGGTGTTCCCCGCGAGAGCGGGGATAAACCGCCGTTCCGTACATTCTCCCGTCAGGAGCGTCCGTGTTCCCCGCGAGAGCGGGGATAAACCGTATCTCGACGTCATCAGTCTTTATTCCCCTTAGTGTTCCCCGCGAGAGCGGGGATAAACCGTAACATCCTCAAATTTTAATTTCTCCAGTTTTGTGTTCCCCGCGAGAGCGGGGATAAACCGACGCCGACAATAAACAACATGTTCAGCTAAAGGTGTTCCCCGCGAGAGCGGGGATAAACCGTCATGTAACCGTTTATCACTCATAACCTCATAGTGTTCCCCGCGAGAGCGGGGATAAACCGTTCCCGCGCGCAGCACGCCAATCTACGTAGTTGTGTTCCCCGCGAGAGCGGGGATAAACCGCATTCACTCCGGCCGCCACGGGGAAAGCCACTGTGTTCCCCGCGAGAGCGGGGATAAACCGAGTTTGCTTAGCTTCCTTCCATGACAAATTCAGTGTTCCCCGCGAGAGCGGGGATAAACCGGTCACGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTG

>LS483475|4|2|2172023-2172600|PILER-CR
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CGATCCAAGACTCATGGCGTATTTCGTCCTCG
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CCGTTCCGTACATTCTCCCGTCAGGAGCGTCC
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TATCTCGACGTCATCAGTCTTTATTCCCCTTA
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TAACATCCTCAAATTTTAATTTCTCCAGTTTT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	ACGCCGACAATAAACAACATGTTCAGCTAAAG
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TCATGTAACCGTTTATCACTCATAACCTCATA
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TTCCCGCGCGCAGCACGCCAATCTACGTAGTT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CATTCACTCCGGCCGCCACGGGGAAAGCCACT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	AGTTTGCTTAGCTTCCTTCCATGACAAATTCA
GTGTTCCCCGCGAGAGCGGGGATAAACCG

>LS483475|4|4|2172023-2172661|CRISPRCasFinder
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CGATCCAAGACTCATGGCGTATTTCGTCCTCG
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CCGTTCCGTACATTCTCCCGTCAGGAGCGTCC
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TATCTCGACGTCATCAGTCTTTATTCCCCTTA
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TAACATCCTCAAATTTTAATTTCTCCAGTTTT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	ACGCCGACAATAAACAACATGTTCAGCTAAAG
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TCATGTAACCGTTTATCACTCATAACCTCATA
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TTCCCGCGCGCAGCACGCCAATCTACGTAGTT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CATTCACTCCGGCCGCCACGGGGAAAGCCACT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	AGTTTGCTTAGCTTCCTTCCATGACAAATTCA
GTGTTCCCCGCGAGAGCGGGGATAAACCG	GTCACGAGGTGATTCACTTGGTACTGGCTGAT
GTGTTCCCCGCGCGAGCGCTGAGTTTGTG

>LS483475|4|2|2172023-2172661|CRT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CGATCCAAGACTCATGGCGTATTTCGTCCTCG
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CCGTTCCGTACATTCTCCCGTCAGGAGCGTCC
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TATCTCGACGTCATCAGTCTTTATTCCCCTTA
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TAACATCCTCAAATTTTAATTTCTCCAGTTTT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	ACGCCGACAATAAACAACATGTTCAGCTAAAG
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TCATGTAACCGTTTATCACTCATAACCTCATA
GTGTTCCCCGCGAGAGCGGGGATAAACCG	TTCCCGCGCGCAGCACGCCAATCTACGTAGTT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	CATTCACTCCGGCCGCCACGGGGAAAGCCACT
GTGTTCCCCGCGAGAGCGGGGATAAACCG	AGTTTGCTTAGCTTCCTTCCATGACAAATTCA
GTGTTCCCCGCGAGAGCGGGGATAAACCG	GTCACGAGGTGATTCACTTGGTACTGGCTGAT
GTGTTCCCCGCGCGAGCGCTGAGTTTGTG

Protein	Signature genes	Signature genes Name	Protein_function
LS483475.1\|SQI57412.1\|2176034_2177048_+\|regulatory-protein	unknown	unknown	gnl\|CDD\|182652
LS483475.1\|SQI57389.1\|2164954_2168698_+\|respiratory-nitrate-reductase-1-subunit-alpha	unknown	unknown	gnl\|CDD\|162434
LS483475.1\|SQI57377.1\|2160393_2161044_-\|nitrate/nitrite-response-regulator-protein-NarL	unknown	unknown	gnl\|CDD\|182619
LS483475.1\|SQI57435.1\|2184744_2186376_+\|oligopeptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|185059
LS483475.1\|SQI57428.1\|2180177_2182856_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
LS483475.1\|SQI57405.1\|2174469_2174928_-\|Protein-YchJ	unknown	unknown	gnl\|CDD\|234966
LS483475.1\|SQI57423.1\|2179364_2179982_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
LS483475.1\|SQI57432.1\|2183332_2183980_+\|membrane-protein	unknown	unknown	gnl\|CDD\|236850
LS483475.1\|SQI57381.1\|2161036_2162833_-\|Nitrate/nitrite-sensor-protein	unknown	unknown	gnl\|CDD\|182581
LS483475.1\|SQI57393.1\|2168694_2170230_+\|respiratory-nitrate-reductase-1-subunit-beta	unknown	unknown	gnl\|CDD\|224063
LS483475.1\|SQI57419.1\|2178289_2178703_-\|DNA-binding-protein-h-ns	unknown	unknown	gnl\|CDD\|182858
LS483475.1\|SQI57416.1\|2177250_2178159_+\|glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|184021
LS483475.1\|SQI57366.1\|2157722_2158412_+\|cation-transport-protein	unknown	unknown	gnl\|CDD\|226226
LS483475.1\|SQI57373.1\|2159127_2160393_+\|invasin	unknown	unknown	gnl\|CDD\|236661
LS483475.1\|SQI57399.1\|2170936_2171614_+\|respiratory-nitrate-reductase-1-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
LS483475.1\|SQI57370.1\|2158438_2158792_-\|Putative-ACR-protein	unknown	unknown	gnl\|CDD\|224470
LS483475.1\|SQI57385.1\|2163170_2164568_+\|major-facilitator-superfamily-nitrite-extrusion-protein	unknown	unknown	gnl\|CDD\|184994
LS483475.1\|SQI57402.1\|2173576_2174419_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
LS483475.1\|SQI57396.1\|2170226_2170937_+\|respiratory-nitrate-reductase-1-subunit-delta	unknown	unknown	gnl\|CDD\|185014
LS483475.1\|SQI57408.1\|2175047_2175944_+\|phospholipase,-patatin-family	unknown	unknown	gnl\|CDD\|182352

Protein	Function_ID	Function_description	E-value
LS483475.1\|SQI57412.1\|2176034_2177048_+\|regulatory-protein	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
LS483475.1\|SQI57389.1\|2164954_2168698_+\|respiratory-nitrate-reductase-1-subunit-alpha	gnl\|CDD\|162434	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens (GP:11344601), E.coli (SP:P09152) and B.subtilis (SP:P42175). All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. Pfam models pfam00384 (Molybdopterin oxidoreductase) and pfam01568(Molydopterin dinucleotide binding domain) will also match the nitrate reductase, alpha subunit. [Energy metabolism, Anaerobic].	0
LS483475.1\|SQI57377.1\|2160393_2161044_-\|nitrate/nitrite-response-regulator-protein-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.27802e-141
LS483475.1\|SQI57435.1\|2184744_2186376_+\|oligopeptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
LS483475.1\|SQI57428.1\|2180177_2182856_-\|alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
LS483475.1\|SQI57405.1\|2174469_2174928_-\|Protein-YchJ	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	1.35103e-106
LS483475.1\|SQI57423.1\|2179364_2179982_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.50577e-115
LS483475.1\|SQI57432.1\|2183332_2183980_+\|membrane-protein	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	6.2097e-137
LS483475.1\|SQI57381.1\|2161036_2162833_-\|Nitrate/nitrite-sensor-protein	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
LS483475.1\|SQI57393.1\|2168694_2170230_+\|respiratory-nitrate-reductase-1-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
LS483475.1\|SQI57419.1\|2178289_2178703_-\|DNA-binding-protein-h-ns	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	4.918e-77
LS483475.1\|SQI57416.1\|2177250_2178159_+\|glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
LS483475.1\|SQI57366.1\|2157722_2158412_+\|cation-transport-protein	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	1.59025e-76
LS483475.1\|SQI57373.1\|2159127_2160393_+\|invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
LS483475.1\|SQI57399.1\|2170936_2171614_+\|respiratory-nitrate-reductase-1-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	7.98868e-133
LS483475.1\|SQI57370.1\|2158438_2158792_-\|Putative-ACR-protein	gnl\|CDD\|224470	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism].	9.49643e-51
LS483475.1\|SQI57385.1\|2163170_2164568_+\|major-facilitator-superfamily-nitrite-extrusion-protein	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
LS483475.1\|SQI57402.1\|2173576_2174419_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	9.83293e-177
LS483475.1\|SQI57396.1\|2170226_2170937_+\|respiratory-nitrate-reductase-1-subunit-delta	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	3.45918e-89
LS483475.1\|SQI57408.1\|2175047_2175944_+\|phospholipase,-patatin-family	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0

>LS483475.1|SQI57399.1|2170936_2171614_+|respiratory-nitrate-reductase-1-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPVDVKQKMAMIAGGACGVLTLVGGILLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASEHLDGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKYQLVRARH
>LS483475.1|SQI57396.1|2170226_2170937_+|respiratory-nitrate-reductase-1-subunit-delta
MIELVIVSRLLEYPDAALWQHQQELFDALASSENLDKEDAQTLGVFLRDLTAQDMLDVQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYEQHGLQLDSRELPDHLPLYLEYLAQLPKSEALGGLQDIAPILALLSARLQQRDSRYAVLFDLLLKLANTVIDSDKVAEKIANEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNITTGGQH
>LS483475.1|SQI57393.1|2168694_2170230_+|respiratory-nitrate-reductase-1-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRALLLGKIFANPHLPGIDDYYEPFDYDYQNLHTAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFENMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIESAASTENEKDLYQRQLDVFLDPNDPAVIEQALKDGVPQSVIDAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVDSLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGKVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHRELARDAFPEKSGCGFTFGDGCHGSDTKFNLFNSRRIDAVDVTSKTEPHA
>LS483475.1|SQI57389.1|2164954_2168698_+|respiratory-nitrate-reductase-1-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLETNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDMPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKKLHRDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDSLGQENNPEWKTVAISSNGEMVAPNGSIGFRWGEKGKWNLEQRDGTTGAETELQLSLLGSQDEIADVGFPYFGGEGSEYFNHVALDNVLLHKLPAKRLQLADGSSALVTTVYDLTMANYGLERGLNDENCAASYDDTKAYTPAWAEQITGVPRAQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLVFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGTNPLYIAREAEKAGMTPVDYTVKSLKDGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTEHGIQGLDLGKQGGVKPEEVEWVDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWDIYKGIAKKFSEVCVGHLGKETDVVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMTVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKADGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLATNKEEEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGRKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSETDAKDLGIEDNDWIEVFNSNGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAQLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>LS483475.1|SQI57385.1|2163170_2164568_+|major-facilitator-superfamily-nitrite-extrusion-protein
MSHSSAPERATGAVITEWRPEDPAFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPLFGGRRWTAFSTGILIVPCVWLGFAVQDTSTPFSTFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAAFGSHGVEQPDGSQLYLANAAWIWVPFLAIFTLAAWFGMNELATSKASLKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSAGGAISDRLGGTRVTLINFVLMAIFSGLLFLTLPTGGVGGSFIAFYGVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSEERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKNKK
>LS483475.1|SQI57381.1|2161036_2162833_-|Nitrate/nitrite-sensor-protein
MFKRCFSPLTLVNQLALIVMLSTAIGVAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRLLAAVPLDAKDQKLLDEMEQTAFSPELTRAAERDGQQKQLKALQDYWHNELSPGLQHAQNAHAVAEDVSRFVAGLDRLVTSFDHTTELRIERVVLVHRVMAIFMALLLVFTIIWLRVRLLQPWKQLLSMARAVSQRDFTQRANISGRNEMAALGSALNNMSEELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSQAPLCERLSPVLNGLQNLTQLHDIELRVYDLEDEDNHQEFTCQSDISCDDKGCHLCPRNALPMINGGTTLKWRLTDSHTQYGILLATLPYGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNCSWAQLRELLTTFRLQLTEPGLRPALEASCQEFSARFGFTVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSHADDVVVTVTQCGKQVKLKVQDNGCGVPENAERSNHYGMIIMRDRAQSLRGDCQVRRRETGGTEVTVTFIPETNFTETQGDTHE
>LS483475.1|SQI57377.1|2160393_2161044_-|nitrate/nitrite-response-regulator-protein-NarL
MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASNGEQGIDLAESLDPDLILLDLNMPGMNGLETLDKLREKALSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTDRDVTQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>LS483475.1|SQI57373.1|2159127_2160393_+|invasin
MVPESHEGEKHFAEMAKAFGEASMKNDDLDTGEQARQFAFGQVRDVVSEQVNQQLESWLSAWGSASVDVNVDNEGHFNGSRGSWFIPLQDKQRYLTWSQLGLTQQTDGLVSNVGVGQRWAQDGWLLGYNTFYDNLLDENLQRAGVGAEAWGEYLRLSANYYQPFADWQTHTATLEQRMARGYDINAQMRLPFYQHINTSVSLEQYFGDSVDLFDSGTGYHNPVALKLGLNYTPVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLAASEVAQSQSLRGSRYDTPQRNSLPTMEYRQRKTLTVFLATPPWDLTSGETVALKLQVRSVHGIRHLSWQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRVSSNEITLALTEPFITMPDDNPHWQPFQEQ
>LS483475.1|SQI57370.1|2158438_2158792_-|Putative-ACR-protein
MQNIVIIANGAAYGSESLFNSLRLAIALREQESHLDLRLFLMSDAVTAGLRGQKPAEGYNIQQMLEILTAQNVPVKLCKTCADGRGITPLPLIDGVEIGTLVELAQWTLTADKVLTF
>LS483475.1|SQI57366.1|2157722_2158412_+|cation-transport-protein
MLTRDFLVNADCKTAFGAIEESLLWSAEQRAVSLAATLACRPNDGAVWIFGYGSLMWNPALAYEESCTGTLEGWHRAFCLRLTAGRGTACQPGRMLALKEGGRTTGVAYRLPESTLEEELTLLWKREMITGCYLPTWCSLTLDNGRMVNALVFIMDPRHPLYESDTHALTIAPLIAAASGPLGTNAQYLFLLDQELRKLGMHDTCLDDLVANVNALLGVKGEQGIANLS
>LS483475.1|SQI57402.1|2173576_2174419_-|formyltetrahydrofolate-deformylase
MQSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVEIAAVIGNHETLRSLVERFEIPFELVSHEGLTREEHDRKMADAIDAHQPDYVVLAKYMRVLTPGFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>LS483475.1|SQI57405.1|2174469_2174928_-|Protein-YchJ
MSQPCPCGSADEYSLCCGRIVSGERVAPDPSHLMRSRYCAFVMKDADYLIKSWHPTCNAAAFRDDIIAGFANTRWLGLTIFEHTWSEAENTGYVSFIARFSEQGKTGAIIERSRFIKENGQWYYIDGTRPQLGRNDPCPCGSGKKFKKCCGQ
>LS483475.1|SQI57408.1|2175047_2175944_+|phospholipase,-patatin-family
MKIGLALGSGAARGWSHIGVIKALKQTGIDIDIVAGCSIGSLVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGRGGLLRGERVFNHYRDIMPVTDFDRCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLLSVNVGNINEESDDSLPWHKRLKERFSSLTSRRGVSSPGAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAHAAIAAGQLAVEKKMDELIPLVRTDV
>LS483475.1|SQI57412.1|2176034_2177048_+|regulatory-protein
MTQPLVGKQILIVEDEPVFRSLLDSWFSSLGATTALAGDGVDALELMGRFTPDLMICDIAMPRMNGLKLVENLRNRGDQTPILVISATENMADIAKALRLGVEDVLLKPVKDLNRLRETVFACLYPNMFNSRVEEEERLFRDWDAMVSNPTAAAQLLQELQPPVQQVISHCRINYRQLVSADQPGLVLDIAPLSDNELAFYCLDVTRAGDNGVLAALLLRALFNGLLQDQLGQQKHRLPELGALLKQVNHLLRQANLPGQFPLFVGYYHSELKNLILVSAGLNATLNTGAHQVQISSGVPLGTLGNAYLNQLSQRCDSWQCQIWGAGGRLRLMLSAE
>LS483475.1|SQI57416.1|2177250_2178159_+|glucose-1-phosphate-uridylyltransferase
MAALNSKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGNEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGNSQIMVEPVEDVTAYGVVNCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWALLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNSLGAEFKAWLEEEMGIKK
>LS483475.1|SQI57419.1|2178289_2178703_-|DNA-binding-protein-h-ns
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE
>LS483475.1|SQI57423.1|2179364_2179982_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPAKLFNQNTSLFEEIRAESARQTIHCVLVDESQFLTRQQVYQLSEVVDKLDIPVLCYGLRTDFRGELFVGSQYLLSWSDKLVELKTICFCGRKASMVLRLDQDGRPYNEGEQVVIGGNERYVSVCRKHYKDALEEGSLTAIQERHRHI
>LS483475.1|SQI57428.1|2180177_2182856_-|alcohol-dehydrogenase
MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIIEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRARFASHGGYMLQGQELKAVQNVILKNGALNAAIVGQPAYKIAELAGFSVPETTKILIGEVTVVDESEPFAHEKLSPTLAMYRAKDFEEAVEKAEKLVAMGGIGHTSCLYTDQDNQQDRVNYFGQKMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLSVVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKENLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGRDFTEGEVAAKKDVVAAPKAEKKAKKSA
>LS483475.1|SQI57432.1|2183332_2183980_+|membrane-protein
MIQTLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARNKTNLTANLSVAIILWSSLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALFALCCWGVFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN
>LS483475.1|SQI57435.1|2184744_2186376_+|oligopeptide-ABC-transporter-substrate-binding-protein
MSNITKKSLIAAGILTALIAASAATAADVPAGVQLADKQTLVRNNGSEVQSLDPHKIEGVPESNVSRDLFEGLLISDVEGHPSPGVAEKWENKEFKVWTFHLRKNAKWSDGTPVTAHDFVYSWQRLADPNTASPYASYLQYGHIANIDDIIAGKKPATDLGVKALDDHTFEVTLSEPVPYFYKLLVHPSVSPVPKSAVEKFGDKWTQPANIVTNGAYKLKNWVVNERIVLERNPQYWDNDKTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPNEVRVDPYLCTYYYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTPPYTDGAKLVEPEWFKWSQQKRNEEAKKLLAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKSPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPLDNIYVKNLYIIKH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483475_3	3.1\|1218795\|17\|LS483475\|CRISPRCasFinder	1218795-1218811	17	LS483475.1	1218900-1218916	1	0.941

1. spacer 3.1|1218795|17|LS483475|CRISPRCasFinder matches to position: 1218900-1218916, mismatch: 1, identity: 0.941

ccgaaaagggggaaggg	CRISPR spacer
ccgaaaagagggaaggg	Protospacer
********.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483475_2	2.3\|974676\|32\|LS483475\|PILER-CR,CRT	974676-974707	32	KT630649	Salmonella phage SEN34, complete genome	3089-3120	0	1.0
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NC_010393	Phage Gifsy-2, complete genome	43672-43703	0	1.0
LS483475_2	2.9\|974677\|31\|LS483475\|CRISPRCasFinder	974677-974707	31	KT630649	Salmonella phage SEN34, complete genome	3089-3119	0	1.0
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NC_010393	Phage Gifsy-2, complete genome	43672-43702	0	1.0
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	66638-66668	1	0.968
LS483475_3	3.2\|1218839\|34\|LS483475\|CRISPRCasFinder	1218839-1218872	34	JQ288021	Salmonella phage SPN3UB, complete genome	36113-36146	1	0.971
LS483475_3	3.2\|1218839\|34\|LS483475\|CRISPRCasFinder	1218839-1218872	34	NC_010393	Phage Gifsy-2, complete genome	8566-8599	1	0.971
LS483475_3	3.2\|1218839\|34\|LS483475\|CRISPRCasFinder	1218839-1218872	34	NC_010392	Phage Gifsy-1, complete genome	39751-39784	1	0.971
LS483475_2	2.3\|974676\|32\|LS483475\|PILER-CR,CRT	974676-974707	32	MT135176	Aeromonas phage vB_AsoM_yong, complete genome	24259-24290	2	0.938
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	66637-66668	2	0.938
LS483475_2	2.9\|974677\|31\|LS483475\|CRISPRCasFinder	974677-974707	31	MT135176	Aeromonas phage vB_AsoM_yong, complete genome	24259-24289	2	0.935
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	MP220846	Sequence 1258 from Patent EP3498865	3607-3638	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	MB451296	JP 2018509174-A/8: COMPOSITIONS AND METHODS FOR DETECTING A BIOLOGICAL CONTAMINANT	3608-3639	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	V00604	Phage M13 genome	3608-3639	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	JC011770	Sequence 1 from Patent EP2655614	3608-3639	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	AB334721	Enterobacteria phage f1 DNA, complete genome, isolate: NBRC 20015	3608-3639	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	MP220845	Sequence 1257 from Patent EP3498865	3607-3638	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	MA648319	JP 2017099398-A/1: CONTINUOUS DIRECTED EVOLUTION	3608-3639	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	JX412914	Enterobacteria phage M13 isolate WT variety Rutgers, complete genome	3608-3639	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	JB730582	Sequence 10 from Patent WO2013082114	3608-3639	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	NC_003287	Enterobacteria phage M13, complete genome	3608-3639	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	LQ653486	Sequence 8 from Patent WO2016160572	3608-3639	2	0.938
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	JB730584	Sequence 12 from Patent WO2013082114	3608-3639	2	0.938
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	127394-127425	3	0.906
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	JQ288021	Salmonella phage SPN3UB, complete genome	32065-32096	3	0.906
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	KC139516	Salmonella phage FSL SP-016, partial genome	3990-4021	3	0.906
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	NC_010393	Phage Gifsy-2, complete genome	4666-4697	3	0.906
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	NC_010392	Phage Gifsy-1, complete genome	43704-43735	3	0.906
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	127395-127425	3	0.903
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	JQ288021	Salmonella phage SPN3UB, complete genome	32065-32095	3	0.903
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NC_010393	Phage Gifsy-2, complete genome	4666-4696	3	0.903
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	KC139516	Salmonella phage FSL SP-016, partial genome	3991-4021	3	0.903
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NC_010392	Phage Gifsy-1, complete genome	43705-43735	3	0.903
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	J02448	Bacteriophage f1, complete genome	3608-3639	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	V00606	Genome of bacteriophage f1 (closely related to phages fd and m13)	3608-3639	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	AB334720	Enterobacteria phage f1 DNA, complete genome, isolate: NBRC 20010	3608-3639	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	2YMG_A	Chain A, Scaffold Strand	226-257	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	GQ153917	Mutant Enterobacteria phage f1 isolate F1_2, complete genome	3608-3639	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	JF719732	Enterobacteria phage f1 isolate f1_1_FR, complete genome	3608-3639	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	GQ153918	Mutant Enterobacteria phage f1 isolate F1_3, complete genome	3608-3639	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	GQ153916	Mutant Enterobacteria phage f1 isolate F1_1, complete genome	3608-3639	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	GQ153919	Enterobacteria phage f1 isolate F1_ancestral, complete genome	3608-3639	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	JF719733	Enterobacteria phage f1 isolate f1_2_FR, complete genome	3608-3639	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	JF719734	Enterobacteria phage f1 isolate f1_3_FR, complete genome	3608-3639	3	0.906
LS483475_4	4.5\|2172296\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172296-2172327	32	J02451	Enterobacteria phage fd strain 478, complete genome	3609-3640	3	0.906
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	279773-279804	4	0.875
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	LR597642	Escherichia phage Evi genome assembly, chromosome: 1	29154-29185	4	0.875
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	279773-279803	4	0.871
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	LR597642	Escherichia phage Evi genome assembly, chromosome: 1	29155-29185	4	0.871
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_KX443408	Klebsiella pneumoniae strain SC24 plasmid pKSC24, complete sequence	22875-22905	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NC_010886	Klebsiella pneumoniae plasmid pK245, complete sequence	33339-33369	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP020526	Enterobacter cloacae strain 109 plasmid unnamed1, complete sequence	97205-97235	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP010383	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-106.409kb, complete sequence	76091-76121	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP021898	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0050 plasmid unitig_3_pilon, complete sequence	32361-32391	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP030350	Enterobacter hormaechei strain AR_038 plasmid unnamed5, complete sequence	72128-72158	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP010385	Enterobacter hormaechei subsp. xiangfangensis strain 34399 plasmid p34399-106.698kb, complete sequence	48846-48876	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP031572	Enterobacter hormaechei strain N1 plasmid pQnrS1-1502262, complete sequence	93582-93612	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_AP019668	Klebsiella pneumoniae strain TA6363 plasmid pTMTA63633, complete sequence	55028-55058	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP034677	Klebsiella quasipneumoniae strain D120-1 plasmid pD120-1_80kb, complete sequence	9950-9980	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP023571	Enterobacter hormaechei strain BW plasmid unnamed3, complete sequence	13660-13690	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP043319	Enterobacter chengduensis strain WCHECl-C4 = WCHECh050004 plasmid pLAP2_050004, complete sequence	24412-24442	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP050812	Yokenella regensburgei strain W13 plasmid pYRW13-125, complete sequence	46793-46823	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_KY126370	Enterobacter cloacae subsp. cloacae strain MN201516 plasmid pOP-I, complete sequence	110943-110973	5	0.839
LS483475_2	2.10\|974738\|31\|LS483475\|CRISPRCasFinder	974738-974768	31	NZ_CP028274	Mixta theicola strain SRCM103227 plasmid unnamed1, complete sequence	23478-23508	5	0.839
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_KX443408	Klebsiella pneumoniae strain SC24 plasmid pKSC24, complete sequence	22875-22906	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NC_010886	Klebsiella pneumoniae plasmid pK245, complete sequence	33339-33370	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP020526	Enterobacter cloacae strain 109 plasmid unnamed1, complete sequence	97205-97236	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP010385	Enterobacter hormaechei subsp. xiangfangensis strain 34399 plasmid p34399-106.698kb, complete sequence	48845-48876	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP031572	Enterobacter hormaechei strain N1 plasmid pQnrS1-1502262, complete sequence	93581-93612	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP010383	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-106.409kb, complete sequence	76091-76122	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_AP019668	Klebsiella pneumoniae strain TA6363 plasmid pTMTA63633, complete sequence	55027-55058	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP034677	Klebsiella quasipneumoniae strain D120-1 plasmid pD120-1_80kb, complete sequence	9949-9980	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP023571	Enterobacter hormaechei strain BW plasmid unnamed3, complete sequence	13659-13690	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP021898	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0050 plasmid unitig_3_pilon, complete sequence	32361-32392	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP043319	Enterobacter chengduensis strain WCHECl-C4 = WCHECh050004 plasmid pLAP2_050004, complete sequence	24411-24442	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP050812	Yokenella regensburgei strain W13 plasmid pYRW13-125, complete sequence	46792-46823	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP030350	Enterobacter hormaechei strain AR_038 plasmid unnamed5, complete sequence	72128-72159	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_KY126370	Enterobacter cloacae subsp. cloacae strain MN201516 plasmid pOP-I, complete sequence	110943-110974	6	0.812
LS483475_2	2.4\|974737\|32\|LS483475\|PILER-CR,CRT	974737-974768	32	NZ_CP028274	Mixta theicola strain SRCM103227 plasmid unnamed1, complete sequence	23477-23508	6	0.812
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	311334-311364	6	0.806
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	NZ_CP045329	Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence	385989-386020	7	0.781
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	NZ_CP045345	Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence	19601-19632	7	0.781
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	NZ_CP045335	Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence	138169-138200	7	0.781
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	30518-30549	7	0.781
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	116574-116605	7	0.781
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	311334-311365	7	0.781
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NZ_CP045329	Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence	385989-386019	7	0.774
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NZ_CP045335	Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence	138169-138199	7	0.774
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NZ_CP045345	Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence	19602-19632	7	0.774
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	30519-30549	7	0.774
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	116575-116605	7	0.774
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	MK279853	Gordonia phage Gray, complete genome	39706-39736	7	0.774
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	MN586022	Gordonia phage Chidiebere, complete genome	39705-39735	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	71306-71336	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	170226-170256	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	170606-170636	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	84784-84814	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	225640-225670	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	52826-52856	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	162918-162948	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	153039-153069	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	143886-143916	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	129910-129940	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	202705-202735	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	21735-21765	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	64372-64402	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	237660-237690	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	163824-163854	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	19453-19483	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	184874-184904	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	150249-150279	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	218900-218930	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	241024-241054	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	161071-161101	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	212732-212762	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	147542-147572	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	174867-174897	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	150645-150675	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	113373-113403	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NC_002305	Salmonella typhi plasmid R27, complete sequence	64239-64269	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	146106-146136	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	104776-104806	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	84376-84406	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	200332-200362	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	176671-176701	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	153018-153048	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	85256-85286	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	165063-165093	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	145516-145546	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	7052-7082	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	101406-101436	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	174867-174897	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	181930-181960	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	147543-147573	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	227720-227750	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	89708-89738	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	17460-17490	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	96003-96033	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	257579-257609	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	163660-163690	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	80469-80499	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	4330-4360	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	10415-10445	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	233650-233680	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	249181-249211	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	200716-200746	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	120354-120384	7	0.774
LS483475_2	2.12\|974860\|31\|LS483475\|CRISPRCasFinder	974860-974890	31	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	101503-101533	7	0.774
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	MK279853	Gordonia phage Gray, complete genome	39705-39736	8	0.75
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	MN586022	Gordonia phage Chidiebere, complete genome	39704-39735	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	71305-71336	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	170225-170256	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	170605-170636	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	84783-84814	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	225639-225670	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	52826-52857	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	162918-162949	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	153039-153070	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	143886-143917	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	129910-129941	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	202705-202736	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	21735-21766	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	64371-64402	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	237659-237690	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	163823-163854	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	19452-19483	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	184873-184904	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	150248-150279	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	218899-218930	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	241023-241054	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	161071-161102	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	212731-212762	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	147541-147572	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	174867-174898	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	150645-150676	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	113373-113404	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NC_002305	Salmonella typhi plasmid R27, complete sequence	64239-64270	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	146105-146136	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	104775-104806	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	84375-84406	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	200332-200363	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	176670-176701	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	153017-153048	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	85255-85286	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	165063-165094	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	145516-145547	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	7051-7082	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	101405-101436	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	174867-174898	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	181929-181960	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	147542-147573	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	227719-227750	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	89708-89739	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	17459-17490	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	96002-96033	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	257578-257609	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	163659-163690	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	80468-80499	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	4330-4361	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	10414-10445	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	233649-233680	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	249180-249211	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	200715-200746	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	120354-120385	8	0.75
LS483475_2	2.6\|974859\|32\|LS483475\|PILER-CR,CRT	974859-974890	32	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	101502-101533	8	0.75
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	154460-154490	8	0.742
LS483475_2	2.11\|974799\|31\|LS483475\|CRISPRCasFinder	974799-974829	31	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	181360-181390	8	0.742
LS483475_4	4.7\|2172418\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172418-2172449	32	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	144792-144823	8	0.75
LS483475_4	4.8\|2172479\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172479-2172510	32	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	30808-30839	8	0.75
LS483475_2	2.5\|974798\|32\|LS483475\|PILER-CR,CRT	974798-974829	32	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	154460-154491	9	0.719
LS483475_4	4.4\|2172235\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172235-2172266	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1279036-1279067	9	0.719
LS483475_4	4.8\|2172479\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172479-2172510	32	NZ_CP044330	Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence	193378-193409	9	0.719
LS483475_4	4.8\|2172479\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172479-2172510	32	NZ_CP034088	Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence	202515-202546	9	0.719
LS483475_4	4.8\|2172479\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172479-2172510	32	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	443482-443513	9	0.719
LS483475_4	4.8\|2172479\|32\|LS483475\|PILER-CR,CRISPRCasFinder,CRT	2172479-2172510	32	NZ_CP042916	Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence	27296-27327	9	0.719
LS483475_4	4.10\|2172601\|32\|LS483475\|CRISPRCasFinder,CRT	2172601-2172632	32	MF417881	Uncultured Caudovirales phage clone 7AX_3, partial genome	10140-10171	9	0.719
LS483475_4	4.10\|2172601\|32\|LS483475\|CRISPRCasFinder,CRT	2172601-2172632	32	MF417844	Uncultured Caudovirales phage clone 8AX_10, partial genome	7152-7183	9	0.719
LS483475_4	4.10\|2172601\|32\|LS483475\|CRISPRCasFinder,CRT	2172601-2172632	32	MF417989	Uncultured Caudovirales phage clone 7F_4, partial genome	5514-5545	9	0.719

1. spacer 2.3|974676|32|LS483475|PILER-CR,CRT matches to KT630649 (Salmonella phage SEN34, complete genome) position: , mismatch: 0, identity: 1.0

gtatccttggcatccattagcgtcatgccttc	CRISPR spacer
gtatccttggcatccattagcgtcatgccttc	Protospacer
********************************

2. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 0, identity: 1.0

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
gaaggcgacaaaaaacagccgtatttcattca	Protospacer
********************************

3. spacer 2.9|974677|31|LS483475|CRISPRCasFinder matches to KT630649 (Salmonella phage SEN34, complete genome) position: , mismatch: 0, identity: 1.0

tatccttggcatccattagcgtcatgccttc	CRISPR spacer
tatccttggcatccattagcgtcatgccttc	Protospacer
*******************************

4. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 0, identity: 1.0

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
aaggcgacaaaaaacagccgtatttcattca	Protospacer
*******************************

5. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.968

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
catcagcgacccgaacgatccgaagtgggtt	Protospacer
************************.******

6. spacer 3.2|1218839|34|LS483475|CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 1, identity: 0.971

atgaaaacagggatagcgttttaccccattcagc	CRISPR spacer
ctgaaaacagggatagcgttttaccccattcagc	Protospacer
 *********************************

7. spacer 3.2|1218839|34|LS483475|CRISPRCasFinder matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 1, identity: 0.971

atgaaaacagggatagcgttttaccccattcagc	CRISPR spacer
ctgaaaacagggatagcgttttaccccattcagc	Protospacer
 *********************************

8. spacer 3.2|1218839|34|LS483475|CRISPRCasFinder matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 1, identity: 0.971

atgaaaacagggatagcgttttaccccattcagc	CRISPR spacer
ctgaaaacagggatagcgttttaccccattcagc	Protospacer
 *********************************

9. spacer 2.3|974676|32|LS483475|PILER-CR,CRT matches to MT135176 (Aeromonas phage vB_AsoM_yong, complete genome) position: , mismatch: 2, identity: 0.938

gtatccttggcatccattagcgtcatgccttc	CRISPR spacer
gtatcttcggcatccattagcgtcatgccttc	Protospacer
*****.*.************************

10. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.938

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
acatcagcgacccgaacgatccgaagtgggtt	Protospacer
.************************.******

11. spacer 2.9|974677|31|LS483475|CRISPRCasFinder matches to MT135176 (Aeromonas phage vB_AsoM_yong, complete genome) position: , mismatch: 2, identity: 0.935

tatccttggcatccattagcgtcatgccttc	CRISPR spacer
tatcttcggcatccattagcgtcatgccttc	Protospacer
****.*.************************

12. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to MP220846 (Sequence 1258 from Patent EP3498865) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

13. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to MB451296 (JP 2018509174-A/8: COMPOSITIONS AND METHODS FOR DETECTING A BIOLOGICAL CONTAMINANT) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

14. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to V00604 (Phage M13 genome) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

15. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to JC011770 (Sequence 1 from Patent EP2655614) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

16. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to AB334721 (Enterobacteria phage f1 DNA, complete genome, isolate: NBRC 20015) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

17. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to MP220845 (Sequence 1257 from Patent EP3498865) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

18. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to MA648319 (JP 2017099398-A/1: CONTINUOUS DIRECTED EVOLUTION) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

19. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to JX412914 (Enterobacteria phage M13 isolate WT variety Rutgers, complete genome) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

20. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to JB730582 (Sequence 10 from Patent WO2013082114) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

21. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to NC_003287 (Enterobacteria phage M13, complete genome) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

22. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to LQ653486 (Sequence 8 from Patent WO2016160572) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

23. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to JB730584 (Sequence 12 from Patent WO2013082114) position: , mismatch: 2, identity: 0.938

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacatgttcagctaatg	Protospacer
*** ************************** *

24. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.906

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
gtatcagcgacccggacgatccgaagtgggtt	Protospacer
*.************.**********.******

25. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 3, identity: 0.906

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
gcatcagcgacccgaacgacccaaaatgggtg	Protospacer
*******************.**.********

26. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 3, identity: 0.906

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
gcatcagcgacccgaacgacccaaaatgggtg	Protospacer
*******************.**.********

27. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 3, identity: 0.906

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
gcatcagcgacccgaacgacccaaaatgggtg	Protospacer
*******************.**.********

28. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 3, identity: 0.906

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
gcatcagcgacccgaacgacccaaaatgggtg	Protospacer
*******************.**.********

29. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.903

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
tatcagcgacccggacgatccgaagtgggtt	Protospacer
.************.**********.******

30. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 3, identity: 0.903

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
catcagcgacccgaacgacccaaaatgggtg	Protospacer
******************.**.********

31. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 3, identity: 0.903

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
catcagcgacccgaacgacccaaaatgggtg	Protospacer
******************.**.********

32. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 3, identity: 0.903

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
catcagcgacccgaacgacccaaaatgggtg	Protospacer
******************.**.********

33. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 3, identity: 0.903

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
catcagcgacccgaacgacccaaaatgggtg	Protospacer
******************.**.********

34. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to J02448 (Bacteriophage f1, complete genome) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacattttcagctaatg	Protospacer
*** **************** ********* *

35. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to V00606 (Genome of bacteriophage f1 (closely related to phages fd and m13)) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacattttcagctaatg	Protospacer
*** **************** ********* *

36. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to AB334720 (Enterobacteria phage f1 DNA, complete genome, isolate: NBRC 20010) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacattttcagctaatg	Protospacer
*** **************** ********* *

37. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to 2YMG_A (Chain A, Scaffold Strand) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacantaaacaacatgttcagctaatg	Protospacer
*** ***** ******************** *

38. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to GQ153917 (Mutant Enterobacteria phage f1 isolate F1_2, complete genome) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacattttcagctaatg	Protospacer
*** **************** ********* *

39. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to JF719732 (Enterobacteria phage f1 isolate f1_1_FR, complete genome) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacattttcagctaatg	Protospacer
*** **************** ********* *

40. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to GQ153918 (Mutant Enterobacteria phage f1 isolate F1_3, complete genome) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacattttcagctaatg	Protospacer
*** **************** ********* *

41. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to GQ153916 (Mutant Enterobacteria phage f1 isolate F1_1, complete genome) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacattttcagctaatg	Protospacer
*** **************** ********* *

42. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to GQ153919 (Enterobacteria phage f1 isolate F1_ancestral, complete genome) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacattttcagctaatg	Protospacer
*** **************** ********* *

43. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to JF719733 (Enterobacteria phage f1 isolate f1_2_FR, complete genome) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacattttcagctaatg	Protospacer
*** **************** ********* *

44. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to JF719734 (Enterobacteria phage f1 isolate f1_3_FR, complete genome) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acgacgacaataaacaacattttcagctaatg	Protospacer
*** **************** ********* *

45. spacer 4.5|2172296|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to J02451 (Enterobacteria phage fd strain 478, complete genome) position: , mismatch: 3, identity: 0.906

acgccgacaataaacaacatgttcagctaaag	CRISPR spacer
acggcgacaataaacaacgtgttcagctaatg	Protospacer
*** **************.*********** *

46. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 4, identity: 0.875

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
ggattagcgacccgaatgatccgaaatgggtg	Protospacer
* **.***********.**************

47. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to LR597642 (Escherichia phage Evi genome assembly, chromosome: 1) position: , mismatch: 4, identity: 0.875

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
ggattagcgacccgaatgatccgaaatgggtg	Protospacer
* **.***********.**************

48. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 4, identity: 0.871

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
gattagcgacccgaatgatccgaaatgggtg	Protospacer
 **.***********.**************

49. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to LR597642 (Escherichia phage Evi genome assembly, chromosome: 1) position: , mismatch: 4, identity: 0.871

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
gattagcgacccgaatgatccgaaatgggtg	Protospacer
 **.***********.**************

50. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_KX443408 (Klebsiella pneumoniae strain SC24 plasmid pKSC24, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

51. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NC_010886 (Klebsiella pneumoniae plasmid pK245, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

52. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP020526 (Enterobacter cloacae strain 109 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

53. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP010383 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-106.409kb, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

54. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP021898 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0050 plasmid unitig_3_pilon, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

55. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP030350 (Enterobacter hormaechei strain AR_038 plasmid unnamed5, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

56. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP010385 (Enterobacter hormaechei subsp. xiangfangensis strain 34399 plasmid p34399-106.698kb, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

57. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP031572 (Enterobacter hormaechei strain N1 plasmid pQnrS1-1502262, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

58. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_AP019668 (Klebsiella pneumoniae strain TA6363 plasmid pTMTA63633, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

59. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP034677 (Klebsiella quasipneumoniae strain D120-1 plasmid pD120-1_80kb, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

60. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP023571 (Enterobacter hormaechei strain BW plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

61. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP043319 (Enterobacter chengduensis strain WCHECl-C4 = WCHECh050004 plasmid pLAP2_050004, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

62. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP050812 (Yokenella regensburgei strain W13 plasmid pYRW13-125, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
agaggaacaaaaaacagccgtatttcattta	Protospacer
*..* .***********************.*

63. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_KY126370 (Enterobacter cloacae subsp. cloacae strain MN201516 plasmid pOP-I, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
aggggaaccaaaaacagccgtatttcattta	Protospacer
*.** .** ********************.*

64. spacer 2.10|974738|31|LS483475|CRISPRCasFinder matches to NZ_CP028274 (Mixta theicola strain SRCM103227 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.839

aaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
aggggaacaaaaaacagccgtattttattta	Protospacer
*.** .*******************.***.*

65. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_KX443408 (Klebsiella pneumoniae strain SC24 plasmid pKSC24, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

66. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NC_010886 (Klebsiella pneumoniae plasmid pK245, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

67. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP020526 (Enterobacter cloacae strain 109 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

68. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP010385 (Enterobacter hormaechei subsp. xiangfangensis strain 34399 plasmid p34399-106.698kb, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

69. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP031572 (Enterobacter hormaechei strain N1 plasmid pQnrS1-1502262, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

70. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP010383 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-106.409kb, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

71. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_AP019668 (Klebsiella pneumoniae strain TA6363 plasmid pTMTA63633, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

72. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP034677 (Klebsiella quasipneumoniae strain D120-1 plasmid pD120-1_80kb, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

73. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP023571 (Enterobacter hormaechei strain BW plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

74. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP021898 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0050 plasmid unitig_3_pilon, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

75. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP043319 (Enterobacter chengduensis strain WCHECl-C4 = WCHECh050004 plasmid pLAP2_050004, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

76. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP050812 (Yokenella regensburgei strain W13 plasmid pYRW13-125, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

77. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP030350 (Enterobacter hormaechei strain AR_038 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
cagaggaacaaaaaacagccgtatttcattta	Protospacer
 *..* .***********************.*

78. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_KY126370 (Enterobacter cloacae subsp. cloacae strain MN201516 plasmid pOP-I, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
caggggaaccaaaaacagccgtatttcattta	Protospacer
 *.** .** ********************.*

79. spacer 2.4|974737|32|LS483475|PILER-CR,CRT matches to NZ_CP028274 (Mixta theicola strain SRCM103227 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gaaggcgacaaaaaacagccgtatttcattca	CRISPR spacer
caggggaacaaaaaacagccgtattttattta	Protospacer
 *.** .*******************.***.*

80. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 6, identity: 0.806

-catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
atacaagc-acccgaaccatccgaaatgagtt	Protospacer
 .*. *** ******** **********.***

81. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to NZ_CP045329 (Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence) position: , mismatch: 7, identity: 0.781

gcatcagcgacccgaacgatccgaaatgggtt--	CRISPR spacer
gcatcagcggtccgaacgatccg--atcattttg	Protospacer
*********..************  ** . **

82. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to NZ_CP045345 (Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence) position: , mismatch: 7, identity: 0.781

gcatcagcgacccgaacgatccgaaatgggtt--	CRISPR spacer
gcatcagcggtccgaacgatccg--atcattttg	Protospacer
*********..************  ** . **

83. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to NZ_CP045335 (Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence) position: , mismatch: 7, identity: 0.781

gcatcagcgacccgaacgatccgaaatgggtt--	CRISPR spacer
gcatcagcggtccgaacgatccg--atcattttg	Protospacer
*********..************  ** . **

84. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 7, identity: 0.781

gcatcagcgacccgaacgatccgaaatgggtt--	CRISPR spacer
gcatcagcggtccgaacgatccg--atcattttg	Protospacer
*********..************  ** . **

85. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gcatcagcgacccgaacgatccgaaatgggtt--	CRISPR spacer
gcatcagcggtccgaacgatccg--atcattttg	Protospacer
*********..************  ** . **

86. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 7, identity: 0.781

-gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
catacaagc-acccgaaccatccgaaatgagtt	Protospacer
 ..*. *** ******** **********.***

87. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NZ_CP045329 (Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence) position: , mismatch: 7, identity: 0.774

catcagcgacccgaacgatccgaaatgggtt--	CRISPR spacer
catcagcggtccgaacgatccg--atcattttg	Protospacer
********..************  ** . **

88. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NZ_CP045335 (Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence) position: , mismatch: 7, identity: 0.774

catcagcgacccgaacgatccgaaatgggtt--	CRISPR spacer
catcagcggtccgaacgatccg--atcattttg	Protospacer
********..************  ** . **

89. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NZ_CP045345 (Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence) position: , mismatch: 7, identity: 0.774

catcagcgacccgaacgatccgaaatgggtt--	CRISPR spacer
catcagcggtccgaacgatccg--atcattttg	Protospacer
********..************  ** . **

90. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 7, identity: 0.774

catcagcgacccgaacgatccgaaatgggtt--	CRISPR spacer
catcagcggtccgaacgatccg--atcattttg	Protospacer
********..************  ** . **

91. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

catcagcgacccgaacgatccgaaatgggtt--	CRISPR spacer
catcagcggtccgaacgatccg--atcattttg	Protospacer
********..************  ** . **

92. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to MK279853 (Gordonia phage Gray, complete genome) position: , mismatch: 7, identity: 0.774

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
cagcttcgacctgaacgatccgaactgggcc	Protospacer
** *  *****.************ ****..

93. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to MN586022 (Gordonia phage Chidiebere, complete genome) position: , mismatch: 7, identity: 0.774

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
cagcttcgacctgaacgatccgaactgggcc	Protospacer
** *  *****.************ ****..

94. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

95. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

96. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

97. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

98. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

99. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

100. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

101. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

102. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

103. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

104. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

105. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

106. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

107. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

108. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

109. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

110. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

111. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

112. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

113. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

114. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

115. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

116. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

117. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

118. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

119. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

120. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

121. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

122. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

123. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

124. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

125. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

126. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

127. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

128. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

129. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

130. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

131. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

132. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

133. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

134. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

135. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

136. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

137. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

138. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

139. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

140. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

141. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

142. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

143. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

144. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

145. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

146. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

147. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

148. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

149. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

150. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

151. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

152. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

153. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

154. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

155. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

156. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

157. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

158. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

159. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

160. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

161. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

162. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

163. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

164. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

165. spacer 2.12|974860|31|LS483475|CRISPRCasFinder matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 7, identity: 0.774

catccgcaggtatcgctggagcaatggcgat	CRISPR spacer
catccgcaggtatcgctggcgcactcccaga	Protospacer
******************* *** *  *..

166. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to MK279853 (Gordonia phage Gray, complete genome) position: , mismatch: 8, identity: 0.75

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
tcagcttcgacctgaacgatccgaactgggcc	Protospacer
 ** *  *****.************ ****..

167. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to MN586022 (Gordonia phage Chidiebere, complete genome) position: , mismatch: 8, identity: 0.75

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
tcagcttcgacctgaacgatccgaactgggcc	Protospacer
 ** *  *****.************ ****..

168. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

169. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

170. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

171. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

172. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

173. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

174. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

175. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

176. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

177. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

178. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

179. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

180. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

181. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

182. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

183. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

184. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

185. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

186. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

187. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

188. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

189. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

190. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

191. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

192. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

193. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

194. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

195. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

196. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

197. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

198. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

199. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

200. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

201. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

202. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

203. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

204. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

205. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

206. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

207. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

208. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

209. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

210. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

211. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

212. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

213. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

214. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

215. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

216. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

217. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

218. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

219. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

220. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

221. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

222. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

223. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

224. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

225. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

226. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

227. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

228. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

229. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

230. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

231. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

232. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

233. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

234. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

235. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

236. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

237. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

238. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

239. spacer 2.6|974859|32|LS483475|PILER-CR,CRT matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 8, identity: 0.75

gcatccgcaggtatcgctggagcaatggcgat	CRISPR spacer
tcatccgcaggtatcgctggcgcactcccaga	Protospacer
 ******************* *** *  *..

240. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 8, identity: 0.742

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
catcagcgacccgaacaatgcgaaggcgcca	Protospacer
****************.** ****.  * .

241. spacer 2.11|974799|31|LS483475|CRISPRCasFinder matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.742

catcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
gatcagcggcccgaacgatccgatcgtgctc	Protospacer
 *******.**************    * *.

242. spacer 4.7|2172418|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.75

ttcccgcgcgcagcacgccaatctacgtagtt	CRISPR spacer
ttcccgcgcccagcaagccaatccagtcagcg	Protospacer
********* ***** *******.*  .**.

243. spacer 4.8|2172479|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cattcactccggccgccacggggaaagccact	CRISPR spacer
atgtcacttcggccgccacggcgaaacgcatt	Protospacer
   *****.************ ****  **.*

244. spacer 2.5|974798|32|LS483475|PILER-CR,CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 9, identity: 0.719

gcatcagcgacccgaacgatccgaaatgggtt	CRISPR spacer
acatcagcgacccgaacaatgcgaaggcgcca	Protospacer
.****************.** ****.  * .

245. spacer 4.4|2172235|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

taacatcctcaaattttaatttctccagtttt	CRISPR spacer
acttgacctcaaattgtaatttctccactttg	Protospacer
   .. ********* *********** ***

246. spacer 4.8|2172479|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044330 (Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

cattcactccggccgccacggggaaagccact	CRISPR spacer
cgaccacaccggccgccacggcgaaagcgcta	Protospacer
*. .*** ************* ******  .

247. spacer 4.8|2172479|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034088 (Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence) position: , mismatch: 9, identity: 0.719

cattcactccggccgccacggggaaagccact	CRISPR spacer
cgaccacaccggccgccacggcgaaagcgcta	Protospacer
*. .*** ************* ******  .

248. spacer 4.8|2172479|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 9, identity: 0.719

cattcactccggccgccacggggaaagccact	CRISPR spacer
cgcatcctccggccgccacggcgaaacccgcc	Protospacer
*.. . *************** **** **.*.

249. spacer 4.8|2172479|32|LS483475|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042916 (Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cattcactc---cggccgccacggggaaagccact	CRISPR spacer
---ttgcctgagcggccgccacggggagagccgct	Protospacer
   *..*..   ***************.****.**

250. spacer 4.10|2172601|32|LS483475|CRISPRCasFinder,CRT matches to MF417881 (Uncultured Caudovirales phage clone 7AX_3, partial genome) position: , mismatch: 9, identity: 0.719

-gtcacgaggtgattcacttggtactggctgat	CRISPR spacer
tattgc-aggtgaatcacttggtagtggcttca	Protospacer
 .*..* ****** ********** *****

251. spacer 4.10|2172601|32|LS483475|CRISPRCasFinder,CRT matches to MF417844 (Uncultured Caudovirales phage clone 8AX_10, partial genome) position: , mismatch: 9, identity: 0.719

-gtcacgaggtgattcacttggtactggctgat	CRISPR spacer
tattgc-aggtgaatcacttggtagtggcttca	Protospacer
 .*..* ****** ********** *****

252. spacer 4.10|2172601|32|LS483475|CRISPRCasFinder,CRT matches to MF417989 (Uncultured Caudovirales phage clone 7F_4, partial genome) position: , mismatch: 9, identity: 0.719

-gtcacgaggtgattcacttggtactggctgat	CRISPR spacer
tattgc-aggtgaatcacttggtagtggcttca	Protospacer
 .*..* ****** ********** *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1177288 : 1253876

Salmonella_phage(58.62%)

terminase,plate,holin,tRNA,integrase,tail,head,transposase,protease

attL 1177404:1177420|attR 1236959:1236975

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI54293.1\|1177288_1178617_-\|transposase	Insertion element 4 transposase N-terminal	NA	NA	NA	NA
1177404:1177420	attL	NA	NA	NA	NA
SQI54294.1\|1178738_1179476_-	lipoprotein	NA	NA	NA	NA
SQI54295.1\|1179607_1180588_+	ftsH suppressor protein SfhB	NA	NA	NA	NA
SQI54296.1\|1180584_1181316_+	membrane protein	NA	NA	NA	NA
SQI54297.1\|1181445_1184019_+	protein disaggregation chaperone	H6X3M6	Enterobacteria_phage	9.9e-127	35.4
SQI54298.1\|1190304_1190760_+	Putative cytoplasmic protein	E3SMI8	Prochlorococcus_phage	1.7e-34	50.0
SQI54299.1\|1190863_1192165_+	alpha-ketoglutarate transporter	Q6JIH2	Burkholderia_virus	2.6e-43	30.1
SQI54300.1\|1192161_1192485_-	lipoprotein	NA	NA	NA	NA
SQI54301.1\|1192529_1193885_-	phosphatidylserine synthase	NA	NA	NA	NA
SQI54302.1\|1193999_1196660_-	acyl-CoA synthetase	NA	NA	NA	NA
SQI54303.1\|1196696_1197395_-	DTW domain-containing protein	NA	NA	NA	NA
SQI54304.1\|1197467_1197887_-	thioredoxin 2	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
SQI54305.1\|1198090_1199128_+\|tRNA	tRNA/rRNA methyltransferase YfiF	NA	NA	NA	NA
SQI54306.1\|1199242_1199932_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.9e-55	49.1
SQI54307.1\|1200250_1200634_+	Pyruvate formate-lyase	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
SQI54308.1\|1200750_1202085_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
SQI54309.1\|1202214_1202952_+\|tRNA	tRNA (adenine-N(6)-)-methyltransferase	NA	NA	NA	NA
SQI54310.1\|1202936_1204559_-	L-aspartate oxidase	NA	NA	NA	NA
SQI54311.1\|1204983_1205559_+	RNA polymerase sigma-E factor (sigma-24)	NA	NA	NA	NA
SQI54312.1\|1205590_1206241_+	anti-RNA polymerase sigma factor SigE	NA	NA	NA	NA
SQI54313.1\|1206240_1207197_+	anti-sigma E factor	NA	NA	NA	NA
SQI54314.1\|1207193_1207673_+	SoxR reducing system protein RseC	NA	NA	NA	NA
SQI54315.1\|1208170_1209400_+\|integrase	integrase	H6WRW7	Salmonella_phage	5.8e-234	94.6
SQI54318.1\|1209377_1209662_-	excisionase-like protein	H6WRW8	Salmonella_phage	3.1e-42	86.2
SQI54321.1\|1209702_1209942_-	putative bacteriophage protein	S4TR31	Salmonella_phage	5.7e-37	98.7
SQI54323.1\|1209984_1211094_-	gifsy-2 prophage RecT	A0A2I7RQF1	Vibrio_phage	2.9e-59	42.9
SQI54326.1\|1211105_1214030_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	73.4
SQI54327.1\|1214170_1214341_-	DNA breaking-rejoining protein	K7PGY4	Enterobacteria_phage	9.7e-07	49.0
SQI54328.1\|1214333_1214450_-	Gifsy-1 prophage protein	NA	NA	NA	NA
SQI54329.1\|1214737_1214944_+	bacteriophage protein	K7P7I0	Enterobacteria_phage	9.6e-17	69.1
SQI54330.1\|1215162_1216371_-\|transposase	transposase IS1113	A0A218MNI5	uncultured_virus	4.2e-51	51.3
SQI54331.1\|1216440_1216728_-	Uncharacterised protein	NA	NA	NA	NA
SQI54332.1\|1216729_1217155_-	Uncharacterised protein	NA	NA	NA	NA
SQI54333.1\|1217197_1217665_-	DNA-binding protein	K7PHG0	Enterobacteria_phage	5.5e-68	85.8
SQI54335.1\|1217678_1217906_+	phage regulatory protein	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
SQI54339.1\|1217925_1218246_+	repressor	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
SQI54354.1\|1218336_1219314_+	regulatory protein	H6WRX7	Salmonella_phage	1.4e-161	99.3
SQI54356.1\|1219316_1220066_+	DNA replication protein DnaC	H6WRX8	Salmonella_phage	6.6e-140	100.0
SQI54358.1\|1220076_1220424_+	DNA-binding protein	H6WRX9	Salmonella_phage	4.5e-59	100.0
SQI54359.1\|1220420_1220741_+	Uncharacterised protein	H6WRY0	Salmonella_phage	6.7e-25	65.5
SQI54360.1\|1220740_1220986_+	Uncharacterised protein	Q5G8U9	Enterobacteria_phage	3.0e-33	88.9
SQI54361.1\|1221296_1222511_+	Uncharacterised protein	J9Q803	Salmonella_phage	3.0e-118	53.3
SQI54362.1\|1222656_1222983_+	phage-like protein	NA	NA	NA	NA
SQI54363.1\|1222982_1223090_+	phage-like protein	NA	NA	NA	NA
SQI54364.1\|1223230_1223464_+	Gifsy-1 prophage DinI	H6WRY5	Salmonella_phage	5.6e-37	100.0
SQI54365.1\|1223863_1224466_+	bacteriophage protein	A0A0M4QX23	Salmonella_phage	9.8e-110	99.0
SQI54366.1\|1224465_1224672_+	Phage protein	H6WRY8	Salmonella_phage	3.4e-30	90.9
SQI54367.1\|1224674_1225286_+	bacteriophage Lambda NinG protein	A0A0M4RU10	Salmonella_phage	8.7e-90	97.5
SQI54368.1\|1225418_1226216_+	molecular chaperone	A0A0M4S661	Salmonella_phage	4.0e-151	99.6
SQI54369.1\|1226614_1226962_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	9.8e-46	80.4
SQI54370.1\|1226964_1227591_+	Phage endolysin	Q858F0	Salmonella_phage	3.0e-93	80.2
SQI54371.1\|1227587_1228130_+\|tail	phage-tail assembly protein	NA	NA	NA	NA
SQI54372.1\|1228184_1228736_+	Uncharacterised protein	NA	NA	NA	NA
SQI54373.1\|1228796_1229549_+\|terminase	putative prophage terminase small subunit	A0A0M3ULJ9	Salmonella_phage	2.0e-11	53.6
SQI54374.1\|1229514_1230933_+\|terminase	putative prophage terminase large subunit	A0A077KAW0	Edwardsiella_phage	3.7e-184	69.0
SQI54375.1\|1230973_1232437_+	Phage-associated protein	A0A0M4S6U1	Salmonella_phage	8.4e-155	56.7
SQI54376.1\|1232513_1233047_+	phage Mu protein F like protein	A0A0M4REK0	Salmonella_phage	5.7e-45	53.4
SQI54377.1\|1233098_1234376_+\|head,protease	head protein/prohead protease	A0A0M4R5A6	Salmonella_phage	1.2e-77	42.8
SQI54378.1\|1234387_1234891_+	putative bacteriophage protein	A0A0M4QWZ6	Salmonella_phage	5.8e-31	45.5
SQI54379.1\|1234902_1235850_+	bacteriophage protein	A0A0M3ULD3	Salmonella_phage	1.2e-98	54.5
SQI54380.1\|1235899_1236268_+	putative bacteriophage protein	NA	NA	NA	NA
SQI54381.1\|1236236_1236647_+	bacteriophage protein	A0A2H4J1A6	uncultured_Caudovirales_phage	9.8e-29	50.4
SQI54382.1\|1236643_1237153_+	bacteriophage protein	A0A2H4J488	uncultured_Caudovirales_phage	3.8e-22	40.7
1236959:1236975	attR	NA	NA	NA	NA
SQI54383.1\|1237152_1237557_+	bacteriophage protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.2e-42	69.2
SQI54384.1\|1237549_1238095_+	bacteriophage protein	A0A2H4J1A0	uncultured_Caudovirales_phage	4.6e-50	53.6
SQI54385.1\|1238098_1239244_+	bacteriophage protein	A0A2H4J8G4	uncultured_Caudovirales_phage	4.5e-164	75.1
SQI54386.1\|1239255_1239696_+	bacteriophage protein	A0A2H4J619	uncultured_Caudovirales_phage	4.6e-56	74.0
SQI54387.1\|1239699_1240152_+	bacteriophage protein	A0A0M4S6U8	Salmonella_phage	1.1e-60	77.2
SQI54388.1\|1240329_1242306_+	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	0.0e+00	96.7
SQI54389.1\|1242338_1242926_+	putative bacteriophage protein	A0A0M3ULD5	Salmonella_phage	1.0e-87	90.8
SQI54390.1\|1242925_1243228_+	bacteriophage protein	A0A0M4R5B7	Salmonella_phage	2.2e-49	94.0
SQI54391.1\|1243230_1244298_+	bacteriophage protein	A0A0M4QX01	Salmonella_phage	4.6e-171	86.7
SQI54392.1\|1244297_1244651_+	putative secreted protein	A0A0M4RTY3	Salmonella_phage	7.7e-30	85.3
SQI54393.1\|1244657_1245188_+	Uncharacterised protein	NA	NA	NA	NA
SQI54394.1\|1245190_1245364_+	Uncharacterised protein	NA	NA	NA	NA
SQI54395.1\|1245423_1246179_+\|plate	baseplate protein	A0A0M5M1K7	Salmonella_phage	1.3e-127	92.8
SQI54396.1\|1246178_1246532_+	bacteriophage protein	A0A0M4R339	Salmonella_phage	3.5e-59	96.6
SQI54397.1\|1246532_1247732_+	bacteriophage protein	A0A0M4RD32	Salmonella_phage	7.2e-213	97.0
SQI54398.1\|1247728_1248409_+	bacteriophage protein	A0A0M5M1K4	Salmonella_phage	9.0e-128	98.2
SQI54399.1\|1248408_1249641_+	hypothetical prophage protein	A0A0M3ULD8	Salmonella_phage	3.9e-81	48.9
SQI54400.1\|1249640_1249994_+\|tail	tail fiber assembly protein	A0A0M4S6V4	Salmonella_phage	1.7e-37	63.8
SQI54401.1\|1250447_1251509_-	acetyltransferase family protein	A0A2H4JA46	uncultured_Caudovirales_phage	8.0e-06	27.3
SQI54402.1\|1252076_1253876_+	GTP-binding protein LepA	E4ZFJ7	Streptococcus_phage	2.5e-23	25.1

DBSCAN-SWA_2

1707914 : 1716482

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI55246.1\|1707914_1708862_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.9e-23	30.8
SQI55248.1\|1708845_1709577_+	putative permease transmembrane component	NA	NA	NA	NA
SQI55249.1\|1709557_1709665_-	membrane protein	NA	NA	NA	NA
SQI55251.1\|1709724_1710456_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
SQI55253.1\|1710678_1712364_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	2.9e-276	90.6
SQI55254.1\|1712360_1713080_+	two-component system response regulator	NA	NA	NA	NA
SQI55256.1\|1713126_1713597_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	2.7e-75	91.0
SQI55258.1\|1713748_1714207_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.9e-55	74.5
SQI55260.1\|1714448_1716482_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	2.8e-55	27.6

DBSCAN-SWA_3

1781271 : 1790300

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI55373.1\|1781271_1782267_+	udp-N-acetylglucosamine 4-epimerase	M4QPK0	Synechococcus_phage	3.3e-09	26.9
SQI55374.1\|1782266_1782383_+	Uncharacterised protein	NA	NA	NA	NA
SQI55375.1\|1782509_1783403_+	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	3.6e-44	42.2
SQI55376.1\|1783798_1784914_+	glycosyl transferase family 1	NA	NA	NA	NA
SQI55377.1\|1784935_1786054_+	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	1.1e-133	65.5
SQI55378.1\|1786256_1786970_+	GDP-fucose synthetase	A0A0E3HIR9	Synechococcus_phage	2.4e-62	52.4
SQI55379.1\|1786972_1787473_+	O-antigen biosynthesis protein	NA	NA	NA	NA
SQI55380.1\|1787465_1788914_+	mannose-1-phosphate guanyltransferase	A0A1V0SH58	Hokovirus	1.8e-56	31.9
SQI55381.1\|1788917_1790300_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.0e-32	26.2

DBSCAN-SWA_4

1862379 : 1932993

Stenotrophomonas_phage(15.38%)

transposase,integrase

attL 1881547:1881563|attR 1928218:1928234

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI55632.1\|1862379_1863453_+\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	4.2e-63	42.2
SQI55634.1\|1863477_1863642_+\|integrase	integrase	NA	NA	NA	NA
SQI55635.1\|1864236_1865124_-	DNA-binding protein	NA	NA	NA	NA
SQI55637.1\|1865973_1866306_-	mRNA interferase PemK	NA	NA	NA	NA
SQI55639.1\|1866306_1866564_-	Antitoxin PemI	NA	NA	NA	NA
SQI55641.1\|1866911_1867118_-	transcriptional regulatory protein	A0A2I7S995	Vibrio_phage	1.3e-16	62.7
SQI55643.1\|1867114_1867582_-	Uncharacterised protein	NA	NA	NA	NA
SQI55645.1\|1867953_1869909_+	Uncharacterised protein	NA	NA	NA	NA
SQI55648.1\|1870021_1876186_-	Uncharacterised protein	NA	NA	NA	NA
SQI55650.1\|1876433_1877291_+	Uncharacterised protein	NA	NA	NA	NA
SQI55652.1\|1878115_1878805_+	Insertion element IS476 uncharacterized 39.2 kDa protein	A0A2I6AZV9	Macacine_betaherpesvirus	1.0e-06	25.6
SQI55654.1\|1878791_1879364_+\|integrase	integrase	NA	NA	NA	NA
SQI55657.1\|1879326_1879866_-	DNA-binding prophage protein	NA	NA	NA	NA
SQI55659.1\|1880535_1884666_+	core protein	NA	NA	NA	NA
1881547:1881563	attL	NA	NA	NA	NA
SQI55662.1\|1884662_1885148_+	Uncharacterised protein	NA	NA	NA	NA
SQI55664.1\|1885157_1885385_+	core protein	NA	NA	NA	NA
SQI55666.1\|1885740_1887255_+	core protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.3e-25	47.2
SQI55669.1\|1887270_1887627_+	Uncharacterised protein	NA	NA	NA	NA
SQI55671.1\|1887715_1888849_+	core protein	A0A2H4JFP5	uncultured_Caudovirales_phage	2.3e-27	47.3
SQI55673.1\|1888867_1889203_+	Uncharacterised protein	NA	NA	NA	NA
SQI55674.1\|1889395_1890016_+	core protein	NA	NA	NA	NA
SQI55676.1\|1891859_1894457_+	Putative hydroxymethyl transferase	NA	NA	NA	NA
SQI55677.1\|1894634_1896089_+	AMP nucleosidase	NA	NA	NA	NA
SQI55679.1\|1896321_1896549_-	Uncharacterised protein	NA	NA	NA	NA
SQI55681.1\|1897000_1897252_-	Uncharacterised protein	NA	NA	NA	NA
SQI55682.1\|1897464_1899195_-	putative periplasmic protein	NA	NA	NA	NA
SQI55684.1\|1899398_1900607_-\|transposase	transposase IS1113	A0A218MNI5	uncultured_virus	4.2e-51	51.3
SQI55685.1\|1900664_1902743_-	tetratricopeptide repeat protein	NA	NA	NA	NA
SQI55687.1\|1903065_1903470_-\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	4.4e-13	45.2
SQI55689.1\|1903993_1904314_+	nitrogen assimilation regulatory protein (pseudogene)	NA	NA	NA	NA
SQI55690.1\|1905000_1905363_-	Uncharacterised protein	NA	NA	NA	NA
SQI55692.1\|1906285_1906972_+	Putative cytoplasmic protein	NA	NA	NA	NA
SQI55693.1\|1907442_1910217_+	autotransporter	NA	NA	NA	NA
SQI55695.1\|1910288_1910852_+	Uncharacterised protein	NA	NA	NA	NA
SQI55696.1\|1911089_1911251_-	Uncharacterised protein	NA	NA	NA	NA
SQI55698.1\|1911400_1911670_-	PerC transcriptional activator	NA	NA	NA	NA
SQI55699.1\|1912344_1914030_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQI55701.1\|1914014_1914686_+	Protein of uncharacterised function (DUF1175)	NA	NA	NA	NA
SQI55702.1\|1914709_1919239_+	MG2 domain	NA	NA	NA	NA
SQI55704.1\|1919242_1920889_+	Predicted secreted protein	NA	NA	NA	NA
SQI55705.1\|1920895_1921666_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQI55707.1\|1921760_1923257_-	dipeptidase	NA	NA	NA	NA
SQI55708.1\|1923928_1924726_-	Putative inner membrane protein	NA	NA	NA	NA
SQI55710.1\|1924993_1925236_-\|integrase	Putative integrase	NA	NA	NA	NA
SQI55711.1\|1925613_1926033_+	umuDC operon protein-like protein	A0A1W6JNS2	Morganella_phage	5.0e-36	59.7
SQI55713.1\|1926034_1927303_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.0e-229	93.1
SQI55714.1\|1928569_1929040_-	Outer membrane protein C precursor	Q1MVN1	Enterobacteria_phage	5.8e-41	57.2
1928218:1928234	attR	NA	NA	NA	NA
SQI55716.1\|1929080_1929752_-	outer membrane protein S1	Q1MVN1	Enterobacteria_phage	1.3e-65	70.5
SQI55718.1\|1930401_1930668_+	membrane protein	NA	NA	NA	NA
SQI55719.1\|1930792_1931509_+	metal-dependent phospho hydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.9e-07	28.2
SQI55721.1\|1931562_1932993_+	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

2037902 : 2082406

uncultured_Caudovirales_phage(30.0%)

transposase,protease,integrase

attL 2041617:2041631|attR 2048690:2048704

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI56620.1\|2037902_2038328_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.4e-30	49.3
SQI56624.1\|2038344_2038566_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.4e-08	61.8
SQI56627.1\|2038830_2039349_+\|transposase	transposase IS1113	A0A218MNI5	uncultured_virus	2.4e-40	45.8
SQI56668.1\|2039503_2041600_-	virulence protein	NA	NA	NA	NA
2041617:2041631	attL	NA	NA	NA	NA
SQI56956.1\|2041991_2042165_+	Uncharacterised protein	NA	NA	NA	NA
SQI56957.1\|2043424_2044117_-	Protein of uncharacterised function (DUF1076)	NA	NA	NA	NA
SQI56958.1\|2044598_2045051_-\|integrase	putative phage integrase protein	A0A2H4IYC8	uncultured_Caudovirales_phage	1.9e-20	69.1
SQI56959.1\|2045197_2045431_+	Uncharacterised protein	NA	NA	NA	NA
SQI56960.1\|2045548_2046025_-	Uncharacterised protein	NA	NA	NA	NA
SQI56961.1\|2046339_2046735_-	protein ycgX	C6ZCX4	Enterobacteria_phage	2.1e-15	32.8
SQI56962.1\|2047416_2048139_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
SQI56963.1\|2048423_2048588_+	membrane protein	NA	NA	NA	NA
SQI56964.1\|2048811_2049462_+	Serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	5.5e-58	50.0
2048690:2048704	attR	NA	NA	NA	NA
SQI56965.1\|2049480_2049672_-	putative secreted protein	NA	NA	NA	NA
SQI56966.1\|2049782_2050022_-	conserved domain protein	NA	NA	NA	NA
SQI56967.1\|2050136_2051678_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
SQI56968.1\|2051653_2054287_-	mce-related protein	NA	NA	NA	NA
SQI56969.1\|2054255_2055539_-	Paraquat-inducible protein A	NA	NA	NA	NA
SQI56970.1\|2055595_2056165_+	GAF domain-containing protein	NA	NA	NA	NA
SQI56971.1\|2056262_2056949_+	ProP effector	NA	NA	NA	NA
SQI56972.1\|2056968_2059017_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
SQI56973.1\|2059210_2060092_+	heat shock protein	NA	NA	NA	NA
SQI56974.1\|2060138_2061512_-	export protein	NA	NA	NA	NA
SQI56975.1\|2061576_2061684_+	Uncharacterised protein	NA	NA	NA	NA
SQI56976.1\|2061687_2062479_+	transcriptional regulator KdgR	NA	NA	NA	NA
SQI56977.1\|2062689_2062929_-	putative exported protein	NA	NA	NA	NA
SQI56978.1\|2063086_2063230_+	Putative inner membrane protein	NA	NA	NA	NA
SQI56979.1\|2063300_2063588_+	putative exported protein	NA	NA	NA	NA
SQI56980.1\|2064825_2066571_+	penicillin-binding protein	NA	NA	NA	NA
SQI56988.1\|2066636_2067446_+	23S rRNA methyltransferase A	NA	NA	NA	NA
SQI56995.1\|2067442_2068009_-	membrane protein YebN	NA	NA	NA	NA
SQI57000.1\|2068418_2068877_-	membrane protein	NA	NA	NA	NA
SQI57004.1\|2068934_2069786_-	PTS mannose transporter subunit IID	NA	NA	NA	NA
SQI57008.1\|2069798_2070599_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA
SQI57012.1\|2070652_2071621_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA
SQI57016.1\|2072092_2073652_+	Magnesium and cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	2.1e-39	44.0
SQI57022.1\|2073673_2075278_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA
SQI57031.1\|2075415_2076780_-	L-serine ammonia-lyase	NA	NA	NA	NA
SQI57044.1\|2077055_2077634_-	putative nudix hydrolase YeaB	NA	NA	NA	NA
SQI57045.1\|2077637_2079002_-	para-aminobenzoate synthase component I	A0A0B5J984	Pandoravirus	3.9e-45	35.3
SQI57046.1\|2079082_2079262_+	conserved domain protein	NA	NA	NA	NA
SQI57047.1\|2079267_2079612_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA
SQI57048.1\|2079742_2081653_+	ATP-dependent helicase	A0A127AW80	Bacillus_phage	5.9e-92	32.7
SQI57052.1\|2081710_2082406_+\|protease	metal-dependent protease-like protein, putative molecular chaperone	NA	NA	NA	NA

DBSCAN-SWA_6

3398516 : 3457750

Bacillus_phage(25.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI62463.1\|3398516_3399434_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
SQI62465.1\|3399430_3399883_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
SQI62466.1\|3399883_3400300_-	copper efflux regulator	NA	NA	NA	NA
SQI62467.1\|3400409_3402911_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	6.7e-112	37.0
SQI62469.1\|3403063_3403900_+	Secreted protein	NA	NA	NA	NA
SQI62470.1\|3404972_3405452_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
SQI62472.1\|3405575_3407228_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
SQI62473.1\|3407400_3408621_+	fosmidomycin resistance protein	NA	NA	NA	NA
SQI62474.1\|3408835_3410512_+	transport protein	NA	NA	NA	NA
SQI62476.1\|3410634_3411939_-	inosine/guanosine kinase	NA	NA	NA	NA
SQI62478.1\|3412091_3413063_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	1.3e-15	27.9
SQI62479.1\|3413059_3414022_-	ferrochelatase	NA	NA	NA	NA
SQI62481.1\|3414223_3414868_-	adenylate kinase	NA	NA	NA	NA
SQI62482.1\|3415167_3417042_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	3.4e-116	37.1
SQI62484.1\|3417152_3417758_-	recombination protein RecR	NA	NA	NA	NA
SQI62485.1\|3417757_3418087_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQI62487.1\|3420174_3420726_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
SQI62488.1\|3420878_3421256_-	Inner membrane protein YbaN	NA	NA	NA	NA
SQI62490.1\|3421336_3421852_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
SQI62491.1\|3421865_3422033_+	Putative inner membrane protein	NA	NA	NA	NA
SQI62493.1\|3422102_3423026_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	1.2e-63	52.1
SQI62494.1\|3423067_3426430_-	integral membrane protein AefA	NA	NA	NA	NA
SQI62496.1\|3426548_3427202_-	potential acrAB operon repressor	NA	NA	NA	NA
SQI62497.1\|3427343_3428537_+	acriflavin resistance protein A	NA	NA	NA	NA
SQI62499.1\|3428559_3431709_+	acriflavin resistance protein B	NA	NA	NA	NA
SQI62500.1\|3432206_3432581_+	Hha toxicity attenuator	NA	NA	NA	NA
SQI62502.1\|3432608_3432827_+	hemolysin expression modulating protein	NA	NA	NA	NA
SQI62504.1\|3433005_3433557_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQI62508.1\|3433673_3434144_+	Putative inner membrane protein	NA	NA	NA	NA
SQI62511.1\|3434344_3434605_-	50S ribosomal protein L31	NA	NA	NA	NA
SQI62514.1\|3434829_3436380_+	Uncharacterized protein ylaB	NA	NA	NA	NA
SQI62517.1\|3436688_3437000_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
SQI62520.1\|3437032_3437602_-	lipoprotein	NA	NA	NA	NA
SQI62522.1\|3437816_3438677_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQI62523.1\|3438776_3440063_-	ammonium transporter	NA	NA	NA	NA
SQI62525.1\|3440094_3440433_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQI62526.1\|3440646_3442428_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	9.2e-39	26.7
SQI62528.1\|3442420_3444193_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
SQI62529.1\|3444233_3444692_-	transcriptional regulator	NA	NA	NA	NA
SQI62531.1\|3444804_3445860_+	lyase	NA	NA	NA	NA
SQI62543.1\|3445909_3446728_-	HMP-PP phosphatase	NA	NA	NA	NA
SQI62570.1\|3446828_3448529_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQI62573.1\|3448593_3449289_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.7e-87	68.0
SQI62575.1\|3449394_3449793_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
SQI62579.1\|3449896_3450271_-	competence protein ComEA	NA	NA	NA	NA
SQI62582.1\|3450420_3452292_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQI62583.1\|3452582_3452855_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
SQI62593.1\|3453063_3455418_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	5.5e-225	52.5
SQI62599.1\|3455603_3456875_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.2e-130	56.2
SQI62602.1\|3457126_3457750_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

DBSCAN-SWA_7

4329224 : 4373315

Burkholderia_phage(40.0%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI64000.1\|4329224_4330223_-\|tRNA	tRNA dihydrouridine synthase A	NA	NA	NA	NA
SQI64001.1\|4330310_4331621_-	conjugative transfer protein	NA	NA	NA	NA
SQI64002.1\|4331867_4332383_+	zinc uptake regulation protein	NA	NA	NA	NA
SQI64003.1\|4332481_4332694_-	stress-response protein	NA	NA	NA	NA
SQI64004.1\|4332712_4332841_-	putative cytoplasmic protein	NA	NA	NA	NA
SQI64005.1\|4332822_4334148_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA
SQI64006.1\|4334326_4334935_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
SQI64007.1\|4335043_4335412_-	diacylglycerol kinase	NA	NA	NA	NA
SQI64008.1\|4335582_4338003_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
SQI64009.1\|4338113_4338986_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
SQI64010.1\|4338999_4339497_-	chorismate lyase	NA	NA	NA	NA
SQI64011.1\|4339677_4340583_-	maltose operon periplasmic protein	NA	NA	NA	NA
SQI64012.1\|4340746_4342105_-	maltoporin	NA	NA	NA	NA
SQI64013.1\|4342192_4343302_-	maltose/maltodextrin transport ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
SQI64014.1\|4343663_4344854_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA
SQI64015.1\|4344985_4346530_+	maltose transport inner membrane protein	NA	NA	NA	NA
SQI64016.1\|4346544_4347435_+	maltose transport inner membrane protein	NA	NA	NA	NA
SQI64017.1\|4347778_4349254_+	D-xylose transporter XylE	NA	NA	NA	NA
SQI64018.1\|4349299_4349710_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
SQI64019.1\|4349851_4351948_-	lipoprotein	NA	NA	NA	NA
SQI64020.1\|4351947_4352685_-	putative lipoprotein	NA	NA	NA	NA
SQI64021.1\|4352681_4353320_-	outer membrane lipoprotein	NA	NA	NA	NA
SQI64022.1\|4353383_4353629_-	YjbE secreted protein	NA	NA	NA	NA
SQI64023.1\|4354069_4355719_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
SQI64024.1\|4356107_4357457_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA
SQI64025.1\|4357591_4357939_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
SQI64026.1\|4358515_4358803_+	membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	48.1
SQI64027.1\|4358838_4359411_+	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	8.3e-58	58.3
SQI64028.1\|4359423_4359738_+	membrane protein	Q6QIC4	Burkholderia_phage	4.9e-20	49.1
SQI64029.1\|4359897_4360353_+	putative cytoplasmic protein	NA	NA	NA	NA
SQI64030.1\|4360349_4360547_+	gp12	Q6QIB1	Burkholderia_phage	3.0e-07	52.9
SQI64031.1\|4360536_4361952_+\|tail	tail protein	A4JWK5	Burkholderia_virus	2.0e-185	69.7
SQI64032.1\|4361951_4362476_+\|tail	tail protein	Q6QIA9	Burkholderia_phage	2.0e-66	68.4
SQI64033.1\|4362527_4362845_+	Uncharacterised protein	NA	NA	NA	NA
SQI64034.1\|4363025_4365311_+\|tail	tail protein	A4JWL0	Burkholderia_virus	5.4e-68	28.8
SQI64035.1\|4365310_4366264_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	4.2e-38	53.1
SQI64036.1\|4366263_4366473_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
SQI64037.1\|4366460_4367501_+	gp21	A4JWL3	Burkholderia_virus	2.3e-74	46.2
SQI64038.1\|4367510_4368233_+\|plate	baseplate protein	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
SQI64039.1\|4368330_4368690_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	1.4e-34	64.2
SQI64040.1\|4368680_4369796_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	2.2e-99	51.4
SQI64041.1\|4369788_4370421_+\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	1.6e-22	54.9
SQI64042.1\|4370423_4371569_+\|tail	tail fiber domain-containing protein	A0A0M3ULF6	Salmonella_phage	4.0e-51	52.0
SQI64043.1\|4371581_4372097_+\|tail	tail assembly chaperone gp38	A0A0U2QV64	Escherichia_phage	8.0e-28	35.0
SQI64044.1\|4372586_4373315_+	cytoplasmic protein	A0A077SLK3	Escherichia_phage	9.6e-35	36.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483475

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection