CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483482	Staphylococcus lugdunensis strain NCTC12217 genome assembly, chromosome: 1	4 crisprs	WYL,csa3,DEDDh,cas3,DinG	2	2	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483482_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483482_1

739260-739344

Orphan

Consensus_repeat	Method
TTCCACGAACAACGCAAGTTGGGGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483482_1

>merge|LS483482|1|739260-739344|CRISPRCasFinder
TTCCACGAACAACGCAAGTTGGGGTGGGGCCCCCAACACAAAGAAATGCAACAAGCATTTCCACGAACAACGCAAGTTGGGGTGG

>LS483482|1|1|739260-739344|CRISPRCasFinder
TTCCACGAACAACGCAAGTTGGGGTGG	GGCCCCCAACACAAAGAAATGCAACAAGCAT
TTCCACGAACAACGCAAGTTGGGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483482.1\|SQI90351.1\|737263_739228_+\|Membrane-component-of-multidrug-resistance-system	unknown	unknown	gnl\|CDD\|129794
LS483482.1\|SQI89966.1\|735919_736471_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
LS483482.1\|SQI90374.1\|744515_745124_-\|DNA-3-methyladenine-glycosylase-II	unknown	unknown	gnl\|CDD\|187726
LS483482.1\|SQI90378.1\|746131_747142_+\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185696
LS483482.1\|SQI90365.1\|740438_741332_+\|esterase	unknown	unknown	gnl\|CDD\|223730
LS483482.1\|SQI90370.1\|742345_743293_+\|Magnesium-and-cobalt-transport-protein-corA	unknown	unknown	gnl\|CDD\|213365
LS483482.1\|SQI89962.1\|731110_732064_-\|Integral-membrane-protein	unknown	unknown	gnl\|CDD\|99750
LS483482.1\|SQI90368.1\|741759_742227_-\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|372545
LS483482.1\|SQI90349.1\|736603_737251_+\|Multidrug-resistance-protein	unknown	unknown	gnl\|CDD\|224482
LS483482.1\|SQI90376.1\|745361_745577_+\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224393
LS483482.1\|SQI90366.1\|741364_741754_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483482.1\|SQI89965.1\|734272_735478_+\|teicoplanin-resistance-protein-TcaB	unknown	unknown	gnl\|CDD\|340878
LS483482.1\|SQI90372.1\|743338_744391_+\|Isopentenyl-diphosphate-delta-isomerase,-FMN-dependent	unknown	unknown	gnl\|CDD\|235465
LS483482.1\|SQI89964.1\|732797_734171_+\|teicoplanin-resistance-protein-TcaA	unknown	unknown	gnl\|CDD\|226987
LS483482.1\|SQI89963.1\|732239_732458_+\|TcaR-family-transcriptional-regulator	unknown	unknown	unknown
LS483482.1\|SQI89961.1\|730351_731020_+\|heme-efflux-system-ATPase-HrtA	unknown	unknown	gnl\|CDD\|213222
LS483482.1\|SQI90380.1\|747217_747871_-\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
LS483482.1\|SQI89960.1\|729293_730355_+\|heme-efflux-system-permease-HrtB	unknown	unknown	gnl\|CDD\|223650
LS483482.1\|SQI90352.1\|739507_740215_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223964
LS483482.1\|SQI89959.1\|728491_729166_-\|two-component-response-regulator-colocalized-with-HrtAB-transporter	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
LS483482.1\|SQI90351.1\|737263_739228_+\|Membrane-component-of-multidrug-resistance-system	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	8.28346e-138
LS483482.1\|SQI89966.1\|735919_736471_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.8895e-08
LS483482.1\|SQI90374.1\|744515_745124_-\|DNA-3-methyladenine-glycosylase-II	gnl\|CDD\|187726	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair. Alkyladenine DNA glycosylase (AAG), also known as 3-methyladenine DNA glycosylase, catalyzes the first step in base excision repair (BER) by cleaving damaged DNA bases within double-stranded DNA to produce an abasic site. AAG bends DNA by intercalating between the base pairs, causing the damaged base to flip out of the double helix and into the enzyme active site for cleavage. Although AAG represents one of six DNA glycosylase classes, it lacks the helix-hairpin-helix active site motif associated with other BER glycosylases and is structurally distinct from them.	4.63097e-75
LS483482.1\|SQI90378.1\|746131_747142_+\|aldose-1-epimerase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	1.01569e-85
LS483482.1\|SQI90365.1\|740438_741332_+\|esterase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.28737e-46
LS483482.1\|SQI90370.1\|742345_743293_+\|Magnesium-and-cobalt-transport-protein-corA	gnl\|CDD\|213365	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the TmCorA-like family are found in all three kingdoms of life. It is a functionally diverse family which includes the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, and three Saccharomyces cerevisiae proteins: two located in the plasma membrane: the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.57866e-137
LS483482.1\|SQI89962.1\|731110_732064_-\|Integral-membrane-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	8.97699e-47
LS483482.1\|SQI90368.1\|741759_742227_-\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|372545	pfam13279, 4HBT_2, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	1.69417e-30
LS483482.1\|SQI90349.1\|736603_737251_+\|Multidrug-resistance-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	5.91566e-37
LS483482.1\|SQI90376.1\|745361_745577_+\|putative-DNA-binding-protein	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	2.90932e-26
LS483482.1\|SQI90380.1\|747217_747871_-\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	1.21515e-67
LS483482.1\|SQI89965.1\|734272_735478_+\|teicoplanin-resistance-protein-TcaB	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.35679e-79
LS483482.1\|SQI90372.1\|743338_744391_+\|Isopentenyl-diphosphate-delta-isomerase,-FMN-dependent	gnl\|CDD\|235465	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional.	1.36295e-178
LS483482.1\|SQI89964.1\|732797_734171_+\|teicoplanin-resistance-protein-TcaA	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	6.36431e-85
LS483482.1\|SQI89961.1\|730351_731020_+\|heme-efflux-system-ATPase-HrtA	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.53245e-86
LS483482.1\|SQI89960.1\|729293_730355_+\|heme-efflux-system-permease-HrtB	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.53035e-10
LS483482.1\|SQI90352.1\|739507_740215_-\|membrane-protein	gnl\|CDD\|223964	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only].	0.00452712
LS483482.1\|SQI89959.1\|728491_729166_-\|two-component-response-regulator-colocalized-with-HrtAB-transporter	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.74683e-75

>LS483482.1|SQI90351.1|737263_739228_+|Membrane-component-of-multidrug-resistance-system
MTTTFIIGYIVVALIFIGLINFFVVKSRKKNKNKGQFKEQRNLQDSKSQQSKFKISDLDKEEMSKNGFNQSKSNDIEDDKRKHQFNDTTEHIATTETGDTSDKLQHADETSHGVNQGDDAHDAINPNSVEGRVNEQIKNQNEDFVFGKNVTRAQIIAAMLFGMFIAILNQTLLNVALPRINTEFNISASTGQWLMTGFMLVNGILIPISAFLFNKYSYRKLFIIALTLFTLGSLVCAISTNFPIMMTGRVLQAIGAGILMPLGSNVIVTIFPPERRGVAMGTMGIAMILAPAIGPTLSGYIVQNYHWNVMFYGMFILGLIAIIIGFIWFRLYQRTTNPKADYQGVVYSTIGFGALLYGFSEAGNKGWGSTEIIVMFILGAVFITLFVIRELTMKAPMLNLEVLKSSTYTLTTIINMVVMMSLFGGMILLPIYLQNLRGFSALDSGLLMLPGALVMGALGPVAGKLLDTVGLKPLALFGIAVMTYGTYELTKLNLDTPYMHIMSIYIIRSFGMAFVMMPLMTAAINALPPRLISHGNAFLNTMRQLAGSIGTAILVTVMTTQTTQHFNAFSTELDKTNPVVQDHMRELATQYGGEQGAMKVLSMFVQKISSVDGINDAFWIATALSILAFILSLFLKSKKKADAEHDKMMSKEHI
>LS483482.1|SQI90349.1|736603_737251_+|Multidrug-resistance-protein
MKKLILINVITIVVLAVIGIIGFHFYNNATSYVTTDNAKVDGKQIKIASPTSGQIKSFDAKEGDKLSKGDKVATVVGKSESGDTQSMDIKMPQNGTIVKTDGAEGSMAQAGNPIAYAYNLDELYITANVDEKDVSSIEKGNDVDVTIDAQGTTVSGKVEHVGQATANSFSLMPSSNSDGNYTKVSQVVPVKISLDSTPSKDVVPGMNAEVKIHKN
>LS483482.1|SQI89966.1|735919_736471_-|TetR-family-transcriptional-regulator
MKNRAKYRIIFNFVHLLEQYPFEAITTKLICAHSNVNRSTFYANFKDKYDLYDIIQNYHKKKYINLLDTLYNDFEDVKSNNMKIHKFFVIVLKYIQRKKAFFHAVFITHPNREIAIEYFQLTKVKYEKILTDYNTTIENKSAFVTYTLGGQTAILLSWLKDGCQESPHKIADILLANTIKLQR
>LS483482.1|SQI89965.1|734272_735478_+|teicoplanin-resistance-protein-TcaB
MSSQQRDKQSLIFIIILGALTAIGPLSIDMFLPGLPEIKHDFNTSTAISQLTLSLFMIGLALGNLFVGPISDAIGRKMPLVVSMFIFTLASFSIIFVSNIWVMIVLRFVQGLTGGASAVISRAIASDLYSGKALTKFLALLMLVNGIAPIIAPTLGGIILSVSIWRTVFIVLTVFGILMLLGSALKVTESLHIEQRETSGIKVIFKNFGKLLATPKYVLPMLIQGVTFIMLFSYISASPFLIQKIYGQSPFAFSLIFASIGVTLIISSQLTGKLVDYVDRQQLLRILTVIQIVGVIIVGFVLTNHWSFWILIIGLIVLVAPVTGVATLGFAIAMDERTTGSGSASSLLGLLQSLLGGLVTPLVNLKGEYNSTPYLIIISIAALALMMLQIVNYFVFKKSTE
>LS483482.1|SQI89964.1|732797_734171_+|teicoplanin-resistance-protein-TcaA
MTTCPKCGEEIKNEQTNHCPNCGATINDNGENSSNQASNEATIRLKKIVPWAIGGFIIILLIIVFVLLKNFNSPDAQAKILINAIDNDDSQKVATMLTTRDNKVDETEAQTYIKYIKKEVGMTKFIFDIRETVEKLNKSETRVAAYLQTRAGENVLRVSKNGRRYLIFNNMSFTPPTKEVTVKPKEDTKYEFKDDGRNKKVVAEADKETTIGKFIPGNYAIDAKKITDNGVFTGYLKFDFKYANSNTVDVNEDFNEAKVHVKIKNGEQLSRSSLKVKINDRTWDYGNAKVYGPYPKNKDITVSATGKVKGKTFETETKSIKADKLTDNTDVTVSFDDDDISDYIEKKEKEDNSLKNKLGSFFSSYSLSLNQAIAQSDFSLVHSFLKKGSSSYDKVRKNIASNTSARLVSPIILSVDQTGDTIKAKVQGFGLNGLPVVKNYVLEESKDDLGYKLVKVD
>LS483482.1|SQI89963.1|732239_732458_+|TcaR-family-transcriptional-regulator
MSTISKSHIDFMKQFIDDVNTLTAKLFKDIQNEYGISVEQSNVLRLLSNHQALTITEITENKALIKLLLVDA
>LS483482.1|SQI89962.1|731110_732064_-|Integral-membrane-protein
MLSISIAFLTFICIVPTLFNSQTFVSLRLYFISVILAFSFVLINLWQQSFVLCYFSLFIVLVTVLFVKHFYLIKQQQGRQLLQELMKYIYRLLLFSCACAYISLIHVPVFNGLFIWFSLIAISTLTTFALYLCFSSAFGRMTNHCTFDGIIVLGAGIFTEAVTPLLASRLNRALSIYNQQSHCTIIVSGGQGKDEPISEALAMKRYLLSHGVPEQSIIMEAHSTNTAENFLYSKSIIDAMTPKPNKLLVVTSQFHILRALRFAQKFGLPVQGIGSSTPCHLLARSLIRDFLGLMHQYKLLLTLYFALLFISAILLNL
>LS483482.1|SQI89961.1|730351_731020_+|heme-efflux-system-ATPase-HrtA
MTLKVANLRKTFGQGEAKTQVLKGIDFEIADGEFVILNGASGSGKTTLLTMLGGLLTPTEGTIEVNDKPLFSTQSHNSALRLTDIGFIFQAAYLIPYLSVIEQLTLVGKEAGQSHNDAQQHARTLLSDIGLAHRLDAYPHMLSGGEKQRVAIMRAFMNQPKIILADEPTASLDAKRAVQVVDMIKTQIKSNHMMGIMITHDERLFAYADRVIQLYDGQIVPG
>LS483482.1|SQI89960.1|729293_730355_+|heme-efflux-system-permease-HrtB
MMKLAWREITFYKFRYILITLIIILLASMVLFITGLAQGLARENISFFEQQHAQHYVMQKMSQPQLEKSNISAQDTSKVRTILQQQPTRLKPQVLTVNQDSLDVMTVTTDKTFKPQLQAGTYPKKAHDIAINNKLTAKGIQIGDKVHFKGHSTHYHVTGILENTMYAHSSMLWMTQEGFEQLNKQAAIVFPVKDLNEKQRSQLADDSKLELVKPDTLQANIASYQAEQAPLNLMVMSLFVITAIVLSAFFYVMTIQKISQIGILKAIGIKTRHLLIALIGQIMLITLFGVSIAVGLIWSLTFVMPVTMPFYIHLTNILVILGGFVFVALIGALLSMIKVLKVDPIEAIGGNAS
>LS483482.1|SQI89959.1|728491_729166_-|two-component-response-regulator-colocalized-with-HrtAB-transporter
MVNCLIVDDDQTILDYVASHLNNEGYHTYTKPSGTAALQFLEQQTVDIAIVDIMMAGMDGFELCQQIKLDFDLPVIMLTARDALTDKERAFLSGTDDYVTKPFEIKELIFRIKAVLRRYQINAEHIIQLGNLTLNDNYMEVQVDHKTMTLPKKEFQLLYMLTSHPKQVFLRDTLIEKVWGFDYEGDERTLDVHIKRLRQRLSKLAANVTITTVRGQGYKVEAHV
>LS483482.1|SQI90352.1|739507_740215_-|membrane-protein
MEQSRSQHPTYQRTQYQPDYQLQTTKKRSWVSIIIHFIVLVLTAISGYSMYKQPLFIFGLKDTEVGYTQLKNFKQSLSNLTELSINSDQVTKLNGLGLSDIAKQLEALSIKPEHIEQLKSVIEQINMLFNIFFGLCILSLILTILTLLFNRTLLKLLNFLSIASMLAIVVYFMIAIDYLAQRIAKLLNNAYVQITPDQVIIEADATHNAIILLICCLALIFLSLFFRSKRQIKRL
>LS483482.1|SQI90365.1|740438_741332_+|esterase
MNRVVNKYLLHNRSIQFKDEGQFNQFMEKRRNANRLKHKQPSTLNVKSNLDKLMLDDMQVFRFNFRHETGKKILYLHGGYNTLQPSPFHWRLMDKLTLATLYEVVLPIYPKAPEFHIDDTFKAIQAVYVQLVDEVGAENIVVMGDGTGGALALSFVQSLIKQQLPMPRKLYLLSPLLDATLSNPEITEKLQQQDQFVNRQGVHDILSVWAAGKPLNNAEISPINGNLEGLPPIVMFGAGKEIYYPDMERLDFYLSEHRQPIEFFRYPKMIHDFSLFPIHESHKVVKQIAQTIDNDLR
>LS483482.1|SQI90366.1|741364_741754_-|Uncharacterised-protein
MTKSSIEKIKSYLLDLHDDLKLNLIDMNQTKDMFMNGPSTELLRRALNMSYYQGQKQALDWLQYNVESQDSHTLMTLIEDKLHLLTEQDSKVKNLAIIAKELPEQLSQEAHRDGQRSILKHIKTRIDVF
>LS483482.1|SQI90368.1|741759_742227_-|3-hydroxyacyl-CoA-dehydrogenase
MIFTVQGMVQQSQIDHNAHMHDADYNYIFSDAINQFNYTHGLSLAERQALHYTIFTVEEHTTYLAEMSLGEHYTIQLFIYNYDDKRIHFFLKLIKENGTLAATNEVMMLGIDSTTRKAAAFPEPYFTEMTSYYKTQDISQWSKQLGHQIGIPNKG
>LS483482.1|SQI90370.1|742345_743293_+|Magnesium-and-cobalt-transport-protein-corA
MSITIRYQTPHTSLTTVPDIADVPKDATIVWYDFEDATAKENDFLRENFDFNYLEIDDTITGVPRVKYKAYDDYQYIVFHSINSDDYSPRALNVFLKNNVLVTYHHKHFSSLMKVAKWNAYHHDGELDCADIVIHILDMMVDKYFDFVYDIEEKVYNFEDKHVDDALSKKVMDNVFKLRSDLIKIKRVMFPMQELVETIKSEGNLIVDSKHSMYIQHIDDHLIKQSNIIRTSQEMTNEIRENYESYSSFRMNSIMQILTLVSVIFSPLTFIAGVYGMNFDNMPELRWHYSYYICLVVMLVIAIALIIFFRKKRWF
>LS483482.1|SQI90372.1|743338_744391_+|Isopentenyl-diphosphate-delta-isomerase,-FMN-dependent
MSNFQREQRKNEHVEIAMAQQDAPASDFDRVRFVHHSIPHIDVAQVNLSTHTSNFKLDYPLYINAMTGGSEWTKQINEKLATVARETGLAMAVGSTHAALRNPDMIESFRIARQVNPEGVIFSNVGADVPVERAVEAVELMEAQALQIHVNAPQELVMPEGNRTFASWMDNIAKMINHVSVPVIIKEVGFGFSKETFKALKDIGVTYVDVSGRGGTNFVSIENERRSNKDMNYLANWGQSTVESLLESQAYQSSLNIFASGGIRTPLDAIKSLALGAKAVGMSRPFLNHVENEGVEQTITFVAQFTTQMQQIMTMLNAPDIEALKQSQLIFDQQLLSWMEQRHIDIDRGL
>LS483482.1|SQI90374.1|744515_745124_-|DNA-3-methyladenine-glycosylase-II
MDFIVPSTIDTAKALLGVKVIYNDDGQIYSGYIVETEAYLGFDDRAAHGFGGKQTPKVTSLYQRGGTIYGHIMHTHLLINFVTQQAGVPEGVLIRAIEPVDGIEAMKINRGKHGYELTNGPGKWTKAFHIPRAIDGTLLNVGRLSIDTKNRKYPREIEASARIGIPNKGIWTSKPLRYTVKGNPYVSRIPKKNMRAAIDTWK
>LS483482.1|SQI90376.1|745361_745577_+|putative-DNA-binding-protein
MKEVVTRLNKVKVYRGYSKISQLELARAVGVSRQTINMIENGKYNPSLKLCVNIAKTLGTTLDTLFWENDT
>LS483482.1|SQI90378.1|746131_747142_+|aldose-1-epimerase
MIVEVEKQRHGIDLIKIDNNETSIVFSNYGARIVAWKFHDNNIVLGNRVEADEFYLNNPLKFGATIGRYSGRIEAGAFKLNQDRYQLEQNDGLNHIHGGSNGCDQVLFDYDIVEGISDVKVIFRAKLNASDDGYPGDLALKVIHHYDIEHRWTITYEAETTATTIFNPTNHVYFNLNRDNNVIDNHQIHAKDLKMYLLNRQHFLLNDTPINLTSQFGSDHITFQEIFQAYQDDIKQQMERYQGLDHPFELSEQTLSVENGEFKLQIDTDMPYVVIYTMNHPETWESQLNIYKPHSGFTLETQFLPNDINYFGQQAPSILRAGQQFSSTTSYQISEQ
>LS483482.1|SQI90380.1|747217_747871_-|MOSC-domain-containing-protein
MIPVVAISTGKIQHLPYSTKKPMISALDKIPFTGRMWLSIDGFSEDEQAYKDHGGPHKAVCCFSQSNYDMYKEDLAQLPTYAMFGENVTVKHLDERDVYFGNQYRLGEAILEVSEMREPCWKIQAKYQIPDLVKRMTASGKTGFYFRVIQEGYVSQEDNLELLTQANKASRLSVYELNDIYYNDRKNISRISYALNNPYLSPSRREKLSRLYHRACK

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Crispr_ID: LS483482_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483482_2

1028020-1028104

Orphan

Consensus_repeat	Method
CAACGCAAGTTGGGGTGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483482_2

>merge|LS483482|2|1028020-1028104|CRISPRCasFinder
CAACGCAAGTTGGGGTGGGGCCCCAACACAAAGACTTTCCAAAAGAAAGTCCACGAACAACGCAAGTTGGGGTGGGCCCCAACAG

>LS483482|2|2|1028020-1028104|CRISPRCasFinder
CAACGCAAGTTGGGGTGGGGCCCCAACA	CAAAGACTTTCCAAAAGAAAGTCCACGAA
CAACGCAAGTTGGGGTGGGCCCCAACAG

Protein	Signature genes	Signature genes Name	Protein_function
LS483482.1\|SQI92812.1\|1035250_1035916_+\|membrane-protein	unknown	unknown	gnl\|CDD\|379133
LS483482.1\|SQI92807.1\|1029658_1031281_+\|molecular-chaperone-GroEL	unknown	unknown	gnl\|CDD\|234573
LS483482.1\|SQI92809.1\|1033584_1033764_+\|membrane-protein	unknown	unknown	unknown
LS483482.1\|SQI92813.1\|1035934_1036807_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
LS483482.1\|SQI92808.1\|1031824_1033111_-\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|181512
LS483482.1\|SQI92806.1\|1029314_1029599_+\|molecular-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
LS483482.1\|SQI92797.1\|1020160_1021135_+\|Fructokinase	unknown	unknown	gnl\|CDD\|238572
LS483482.1\|SQI92804.1\|1026343_1027852_+\|membrane-anchored-protein	unknown	unknown	gnl\|CDD\|283060
LS483482.1\|SQI92798.1\|1021226_1021943_-\|Accessory-gene-regulator-A	unknown	unknown	gnl\|CDD\|225818
LS483482.1\|SQI92814.1\|1036806_1037535_+\|ABC-2-transporter-family-protein	unknown	unknown	unknown
LS483482.1\|SQI92810.1\|1033989_1034370_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
LS483482.1\|SQI92795.1\|1017625_1018576_+\|LacI-family-transcriptinal-regulator	unknown	unknown	gnl\|CDD\|380484
LS483482.1\|SQI92799.1\|1021955_1023245_-\|histidine-kinase-of-the-competence-regulon-ComD	unknown	unknown	gnl\|CDD\|225519
LS483482.1\|SQI92805.1\|1028393_1029134_-\|abortive-infection-protein	unknown	unknown	gnl\|CDD\|376806
LS483482.1\|SQI92802.1\|1024606_1025392_-\|aliphatic-amidase	unknown	unknown	gnl\|CDD\|143607
LS483482.1\|SQI92796.1\|1018675_1020160_+\|sucrose-6-phosphate-hydrolase	unknown	unknown	gnl\|CDD\|273554
LS483482.1\|SQI92801.1\|1023412_1023979_-\|accessory-gene-regulator-B-(AgrB)	unknown	unknown	gnl\|CDD\|214819
LS483482.1\|SQI92811.1\|1034366_1035254_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
LS483482.1\|SQI92803.1\|1025526_1026150_-\|nitroreductase	unknown	unknown	gnl\|CDD\|226090
LS483482.1\|SQI92800.1\|1023266_1023410_-\|AgrD	unknown	unknown	gnl\|CDD\|129030

Protein	Function_ID	Function_description	E-value
LS483482.1\|SQI92812.1\|1035250_1035916_+\|membrane-protein	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	9.79145e-05
LS483482.1\|SQI92807.1\|1029658_1031281_+\|molecular-chaperone-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
LS483482.1\|SQI92813.1\|1035934_1036807_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.00301e-70
LS483482.1\|SQI92808.1\|1031824_1033111_-\|aspartate-aminotransferase	gnl\|CDD\|181512	PRK08637, PRK08637, hypothetical protein; Provisional.	0
LS483482.1\|SQI92806.1\|1029314_1029599_+\|molecular-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.23372e-43
LS483482.1\|SQI92797.1\|1020160_1021135_+\|Fructokinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	1.39411e-98
LS483482.1\|SQI92804.1\|1026343_1027852_+\|membrane-anchored-protein	gnl\|CDD\|283060	pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1 (LMP1). This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1 of EBV is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N-terminus and a long cytoplasmic carboxy tail of 200 amino acids. EBV latent membrane protein 1 (LMP1) is essential for EBV-mediated transformation and has been associated with several cases of malignancies. EBV-like viruses in Cynomolgus monkeys (Macaca fascicularis) have been associated with high lymphoma rates in immunosuppressed monkeys.	2.49681e-15
LS483482.1\|SQI92798.1\|1021226_1021943_-\|Accessory-gene-regulator-A	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	2.15987e-49
LS483482.1\|SQI92810.1\|1033989_1034370_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	7.10606e-39
LS483482.1\|SQI92795.1\|1017625_1018576_+\|LacI-family-transcriptinal-regulator	gnl\|CDD\|380484	cd01542, PBP1_TreR-like, ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.05205e-83
LS483482.1\|SQI92799.1\|1021955_1023245_-\|histidine-kinase-of-the-competence-regulon-ComD	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	1.06592e-25
LS483482.1\|SQI92805.1\|1028393_1029134_-\|abortive-infection-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.58745e-11
LS483482.1\|SQI92802.1\|1024606_1025392_-\|aliphatic-amidase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	2.38483e-124
LS483482.1\|SQI92796.1\|1018675_1020160_+\|sucrose-6-phosphate-hydrolase	gnl\|CDD\|273554	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
LS483482.1\|SQI92801.1\|1023412_1023979_-\|accessory-gene-regulator-B-(AgrB)	gnl\|CDD\|214819	smart00793, AgrB, Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein. AgrB is involved in the proteolytic processing of AgrD and may have both proteolytic enzyme activity and a transporter facilitating the export of the processed AgrD peptide.	1.62444e-52
LS483482.1\|SQI92811.1\|1034366_1035254_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.00682e-66
LS483482.1\|SQI92803.1\|1025526_1026150_-\|nitroreductase	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	4.41405e-99
LS483482.1\|SQI92800.1\|1023266_1023410_-\|AgrD	gnl\|CDD\|129030	smart00794, AgrD, Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr.	3.71224e-14

>LS483482.1|SQI92804.1|1026343_1027852_+|membrane-anchored-protein
MTRKKTKIKYLSASFAIAVSTQVISPHITHAQDNTLYNKVTNEKSTAHSDNLSQDNSNQKDSDNTNQPSNSSNSANNEGKDNRPNKPSDGTDNGGKDNRPNKPSDGTDNEGKDNKPNKPSDGTDNGGKDNKPNKPSDGTDNEGKDNKPNKPSDGTDHGGKDNKPNKPSDGTDHGGKDNRPNKPSDGTDNVGKDNKPNKPSDGTDHGGKDNKPNKPSDGTDHGGKDNKPSDGKDNGRTSSHPQTPTQNGGHGHKPTNQPNNKDNNNGQNNGNGNQGWNTSNGQQSPQNGEKTDHNISDDFINQINGRGHNSGRNSSSYFPRNHYDEGPVANNQRQSIMKRFKSLAIGSFKYNPFIIEQVNKLGESGNQVSDQDLYALFRKQNFSGNSYLNSLQRGSNYFRFEYFNPTNSSKYYKNLDEQVLALITGEIGSMPDLKKPVDKKGEDNHTQRSEDKIISAEGEDHKQGMTDVKFNRLNVTLIGSMCMIFVAVMIYWFINRQKEKEQ
>LS483482.1|SQI92803.1|1025526_1026150_-|nitroreductase
MGLFSKNSEKSFLNAIEERRTVYNLKESISISDEELEQIMTQAIKHVPSAFNSQSTRIVLLLNDKNKQFWDNTKAVLKEKMGADRDFTATEQKIDNFKHSYGTILYFEDQSVVKGLQEQMPSYAENFAIWSTQANAMHQFAIWTALSTKGIGASLQHYNPLVDAVTHQDFDIPETWELMAQMPFGDVREEPNEKEIQPVDARFLVRK
>LS483482.1|SQI92802.1|1024606_1025392_-|aliphatic-amidase
MKLQLLQFNVAYADVNANEHKIKTWFSNSLQQDTDVVILPEMWNNGYALEQLEEKADFDLERSTDFIKNLALQYQVDIIAGSVSNKHHDHIFNTAFAIDKTGKVINQYDKMHLVPMLDEPAFLTAGKNVPETFKLSNGVKVTQMICYDLRFPELLRYPARSGATIAFYVAQWPSARLNHWQVLLKARAIENNMYVIGCNGCGYDGKTQYAGHSVVINPNGEIIQELSTTEKELTVTIDIDAVEQQRKAIPVFDSLVPHLYK
>LS483482.1|SQI92801.1|1023412_1023979_-|accessory-gene-regulator-B-(AgrB)
MKAIDKKIERFARYLQRQNNLDHIQFLKIRLGIQVALGNFFKTIVTYGVALLFHTFLYTLITHLTYFFVRRFAHGAHARSSLLCHIQNLVLFVALPWSIVHFQVSWTFMILLAFIAFIIIICYAPAATKKQPILPHLRKKKKRNAILISICFLVLMLFVSEPYMQLIALGMCIEAITLLPIFFSKEET
>LS483482.1|SQI92800.1|1023266_1023410_-|AgrD
MNLLSGLFTKGISAIFEFIGNFSAQDICNAYFDEPEVPQELIDLQRK
>LS483482.1|SQI92799.1|1021955_1023245_-|histidine-kinase-of-the-competence-regulon-ComD
MDLLNSIPLSIFQSLMLLFVAKIVADIKFQMRDYFAIFGIIIPSTILFGVIGRQSLIFLIIGCLIFFYLKIGLYSVLAIFGSALIMYVSNYISVILSVIADYFSLSYIVQIIIILVSFTLISIICAYFIRFLINKLKKTYLYFNKIYISVISIFLILSLIMLYLYTQIFKQEYQDLKIFAIIFVGILFFLAIFIIVITFSVHREMQYKRNLKEIETYYEYTLQIESINNEMRKFRHDYVNILSTMSEFIREDDMPGLREYFNDNIVSMKDNLQMNSIKINGTDKLKVRAIKGLVTTKILQAQEKNIPISIEVPELIEHIEMNTVDLSRVIGIIIDNAIEASESLEDALIRIAFIKNEDSVLFIVMNKCSDTTPKIHELFQENFSTKGKNRGLGLSNLKEITDATPNTLLDTTIDNGYFIQKVEILNNIP
>LS483482.1|SQI92798.1|1021226_1021943_-|Accessory-gene-regulator-A
MKIYICEDDVKQRENMVEIINNYIMIEEKPMEIALATDNPYEILKMSKENEDVGCYFLDIQLEADINGIKLGSEIRKYDPIGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKERTVETIELKRGSNSVYVQYDEVMFFESSTNSHRLIAHLDNRQIEFYGNLKQISQIDDRFFRCHNSFVVNRHNISSINSKERVVYFKNGEHCYASVRNVKKI
>LS483482.1|SQI92797.1|1020160_1021135_+|Fructokinase
MRTLYAIGEALIDFIPNVVNSELKDVTGFTRQVGGAPANVASTVARLGGQAHMITQLGQDAFGDIIVETLQQIGVGTSHIKRTDIANTALAFVSLKEDGQRDFSFYRKPSADMLYHPDNVEEIDVSSEDIMHFCSVDLIDSDMKQAHYKLIEKFEAQRGTIIFDPNVRLPLWKNAADCKKAINEFIPKANIVKVSDEELEFITGESSLEAGIQALFKGHVEAVIYTAGSNGASIYLKNGKHIYHEGFTVKAIDTTGAGDAFIGAVISRLLLAEDTPVTQQLEQDGAEILEFSNCVASTVTTKYGAIESIPTLEEVKQQLNKKTS
>LS483482.1|SQI92796.1|1018675_1020160_+|sucrose-6-phosphate-hydrolase
MSEWTREQRYQGIDDVPQSQLIELKQKVDASHYRQTYHIQPETGLLNDPNGLIFYNGTYYVSHQWFPLGAVHGLKYWFNYTSKDLVSFTPHGPILEPDTAYDSHGVYSGSAFEYNGQLYYMYTGNHRDSEWNRHSSQMLAKVDEYGDAVKFEKPVIPAPPTGYTQHFRDPNVFQKDGQYFMIIAAQNEQENACLLLYKMEEQVNEWAFVGEIATQLSNFGYMWECPDFFNLNQTDVLLFCPQGISPEGERFNNIYQSGYLLGTLDIQKPAFEHQDFKELDYGFDFYAPQTFLDKQGNRILIGWMGMPDTHYPTDDEGWAHCLTLPRVLTVEHGKLIQRPLPALQKLRHNEETAEGYANKFTTKLHPYEGLHYELIIDILENEASEVYFELRTSKQHSTLITYNKQSQRLTLDRSDSGALPEPVKGTTRSTILDTPLSQLQIFVDTSSIEIFCNNGERVLTSRIFPDEQATGIKTSTESGQVYLKFTKYELKDEK
>LS483482.1|SQI92795.1|1017625_1018576_+|LacI-family-transcriptinal-regulator
MKNIADIARLAGVSKSTVSRYLNNGSVSTKTKEKLSKIIKEQDYQPNQFAQSLRARHTKMIGAIIPRMNSHAVDETIKGVAHVCKELEYQLLLNYTGLDLSEEIIALETLSRSKVDGIILMATRITPQHLDVINKINVPVILVGQEHSGVNSIIHDDYLAGSYVGRQIVEANYKQVYFFGVTEEDKAVGQQRKNGVLDILALNHIDVQVFKTSFQFMEAKNDVKLHLQSVHTADAIIGATDTIALAIHSYCSQPHHKLIPHKIYGFGGDPITQIVTPQINTVMYHYFKAGQQALSQLHRLINHHDAQLLTVIPVEL
>LS483482.1|SQI92805.1|1028393_1029134_-|abortive-infection-protein
MSRIWISFLTIVIYALAQYLPVFIIKLTSFQIKSPTQLLHVAIYIQVILFIIAAIIIILLQKVIKNPTKLESDYKEPKRYLVQYALLGFIVVMIYQMFAGLINTWIFGELKASPNTERLMDIARQAPIFIILISIVGPILEEYVFRKVIFGEILDRLKGNIVMRFLIASVVSSLLFALAHNDITFIIVYFGMGMIFSLAYVLTKRIAVSIMIHMMQNGFVVIMQVCFGDVLKHLQTQANAIFHLFF
>LS483482.1|SQI92806.1|1029314_1029599_+|molecular-chaperone-GroES
MLKPIGNRVVIEKKEQEQTTKSGIVLTDSAKEKSNEGVVIAVGLGRQLENGQRITPDVNEGDRVVFQEYAGTEIKQGNDTYLILNADDILAIIE
>LS483482.1|SQI92807.1|1029658_1031281_+|molecular-chaperone-GroEL
MAKDLKFSEDARQAMLRGVDKLANAVKVTIGPKGRNVVLDKEYAAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAIEALHDISQKVENKNEIAQVGAISAADEEIGQYISEAMDKVGNDGVITIEESSGFNTELEVVEGMQFDRGYQSPYMVTDSDKMTAELERPYILVTDKKISSFQDILPLLEQVVQSSRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLELKDATMDMLGSANKVEVTKDNTTIVDGDGDNNNIDARVSQIKAQIEETDSDFDKEKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNIYKKVSDIQAEGDVETGINIVLKALTAPVRQIAENAGLEGSIIVERLKHADSGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVANIPEPESNNQPPMGGGMPGMM
>LS483482.1|SQI92808.1|1031824_1033111_-|aspartate-aminotransferase
MNPLAQNLNNELYQYNPEVLSMLSQLGKEMFYPKGILSQSADAKSTKYNATIGMATDKDGKMYANELYGVFNHLSPDEIFPYAPPQGIEGLRTLWQEKMLKENPDLKSHIISKPIVTNALTHGLSLIGDLFVDTNDTILLPSHNWGNYKLIFNTRHQANINTYDIFDNNGHYTTDALVSTLEHYTSDKVIMILNYPNNPTGYTPTKQEVKTIVEAIEALANKGTKVIAVVDDAYYGLFYEDVYTQSIFTALTTLNHKNILPVRLDGATKEFFAWGLRVGFMTFGIHNDTAQQVLEAKVKGLIRSNISSGPMPSQNAIKYVLEHHEQFNKEIQANINTLQERYAVTKEVVYDKQYQRHWQAYDFNSGYFMALKVNGVDPEELRVHLINKYSIGIIALNDTDIRVAFSCVEKDDIPHVFNSIAQAIEDLK
>LS483482.1|SQI92809.1|1033584_1033764_+|membrane-protein
MKHLTKIFAILAIILFVLGYYLQATNHESSGIKILTAAILFIICAFISRNNDRRKQNRK
>LS483482.1|SQI92810.1|1033989_1034370_+|GntR-family-transcriptional-regulator
MKILIKNTSNQPIYEQIKQQIKENILTGQIDAGSHLPSMRELAKDLQVSLITTKRAYEDLEKDGFVTTIRGKGTFVKEQDQSILKEKQFIVIEQLAHSLCKEAKTIGMPLAEIKEIISLIYEEDEV
>LS483482.1|SQI92811.1|1034366_1035254_+|ABC-transporter-ATP-binding-protein
MNVVELNNVNYKNPSIELKNISFNIPRGFVTGFIGANGSGKTTIIRLIMGLLEASSGTIQLFNRTMDDAPQYIKDKIGFVYSDIYANPDWTIDKLEYYTAPFYNQWDTKCFNDYLRQFHLNKQQKIKMLSSGMKMKLSLALALSHHAELFVFDEPTSGLDPVARNEVLTLIQHELLDEQKTVLMSTHIMSDLEKIADYLVYLKHGEILLTGECDALLAKYDIVKGDAAQLDSELDDLLDYKEIRHTGYLGLTSHGNTFKELFGHDVEVYSPTIEELMIYLDKGQKNNLSVREDSQ
>LS483482.1|SQI92812.1|1035250_1035916_+|membrane-protein
MKSLLMRNFKLRQWTLYIYLGLLVFFPIYIIITVNTDFGFIIFIPIGIILMIISIFDAGHMFRVHKRLGGQQAYIYFASLPVSKKDMLRANYLTCLLLTLFGALVIGLYDSQTIDNELMNRLHISTAYSFLIVNFLSIPIAFPKYTEYKRKGVSYVGYLIFMLIVIPVMYSFFFTVLNHAMFNNQLSKNEVAYFLNNGLLVIAILIFIINYFIQLKYIKRL
>LS483482.1|SQI92813.1|1035934_1036807_+|ABC-transporter-ATP-binding-protein
MQLKKITKTYKDNVVLDQIDFDFKESQIVGLIGKNGVGKTTLMKVMNNNIINYQGEVAVNREDNIGYLIEHPKLYDNKSGLDNLKLFAQVLGNGFDKSYSDKIIDAFGMRSYINKKVKKYSMGMKQKLAIAVSLMNKPKYLILDEPTNGMDPDGSIDVLETIKSLVEELQMKILISSHKLEDIELICDRAIFLRNGKFVQDVDMTKGSIDDATIIKVKVEQFDEAKEVLENHFNVLESHAELGELHIKIQQDYSQLLKLLAQRHVYPTFIESRKNSLRDTYFNINQRGDK
>LS483482.1|SQI92814.1|1036806_1037535_+|ABC-2-transporter-family-protein
MRSLQLVKYDLISIIKSYLTYVAIALVGGLFGLVSYLFMKNTHKVHYESLIPMINWALLFVGTLFVIKTITRDYSQGTIQLYMNRVSSRIGYVMAKVISIILIALIFAGVAYISMLLIQAFTKGDKLDGDIFLKNIWFYVIFLLFYGLVLFLLTLIVQKPAVIFTIGIFLIFIVPFIDPFLGLIPEWGEHIQDAMKYIPFSYLTKKELNSNIEFTNWQWFISIASIVVLFVTTLFYATKRDI

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Crispr_ID: LS483482_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483482_3

1684419-1684504

Orphan

Consensus_repeat	Method
GAAATTCGACAAACAAAGCAAGTTGGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483482_3

>merge|LS483482|3|1684419-1684504|CRISPRCasFinder
GAAATTCGACAAACAAAGCAAGTTGGGGTGGGGCCCCAACAAAGAGAATTTCGAAATGAAATTCGACAAACAAAGCAAGTTGGGGT

>LS483482|3|3|1684419-1684504|CRISPRCasFinder
GAAATTCGACAAACAAAGCAAGTTGGGGT	GGGGCCCCAACAAAGAGAATTTCGAAAT
GAAATTCGACAAACAAAGCAAGTTGGGGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483482.1\|SQI94603.1\|1697225_1697963_-\|tRNA-(guanine37-N1)--methyltransferase	unknown	unknown	gnl\|CDD\|234581
LS483482.1\|SQI94477.1\|1679542_1680850_-\|tRNA:m(5)U-54-MTase-gid	unknown	unknown	gnl\|CDD\|235416
LS483482.1\|SQI94475.1\|1677974_1678517_-\|ATP-dependent-protease-HslV	unknown	unknown	gnl\|CDD\|235477
LS483482.1\|SQI94473.1\|1675729_1676503_-\|GTP-sensing-transcriptional-pleiotropic-repressor-codY	unknown	unknown	gnl\|CDD\|235230
LS483482.1\|SQI94594.1\|1684673_1685909_-\|FmhA-protein-of-FemAB-family	unknown	unknown	gnl\|CDD\|367067
LS483482.1\|SQI94595.1\|1685922_1687071_-\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|366664
LS483482.1\|SQI94598.1\|1689473_1690241_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
LS483482.1\|SQI94601.1\|1693961_1696568_+\|integral-membrane-protein	unknown	unknown	gnl\|CDD\|226888
LS483482.1\|SQI94471.1\|1673660_1674539_-\|Translation-elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
LS483482.1\|SQI94600.1\|1691365_1693957_+\|membrane-protein	unknown	unknown	gnl\|CDD\|370572
LS483482.1\|SQI94596.1\|1687266_1688175_-\|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain	unknown	unknown	gnl\|CDD\|180194
LS483482.1\|SQI94476.1\|1678517_1679411_-\|Site-specific-tyrosine-recombinase	unknown	unknown	gnl\|CDD\|274042
LS483482.1\|SQI94602.1\|1696769_1697120_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
LS483482.1\|SQI94597.1\|1688196_1689363_-\|Succinyl-CoA-ligase-[ADP-forming]-beta-chain	unknown	unknown	gnl\|CDD\|234813
LS483482.1\|SQI94472.1\|1674722_1675511_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
LS483482.1\|SQI94474.1\|1676524_1677928_-\|ATP-dependent-protease-ATP-binding-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
LS483482.1\|SQI94599.1\|1690224_1691109_-\|50S-ribosomal-subunit-maturation-GTPase-RbgA	unknown	unknown	gnl\|CDD\|236570
LS483482.1\|SQI94470.1\|1672801_1673524_-\|Uridylate-kinase	unknown	unknown	gnl\|CDD\|234735
LS483482.1\|SQI94592.1\|1680901_1682971_-\|DNA-topoisomerase-I	unknown	unknown	gnl\|CDD\|235516
LS483482.1\|SQI94593.1\|1683142_1684057_-\|SMF-family-protein	unknown	unknown	gnl\|CDD\|376794

Protein	Function_ID	Function_description	E-value
LS483482.1\|SQI94603.1\|1697225_1697963_-\|tRNA-(guanine37-N1)--methyltransferase	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	3.92595e-168
LS483482.1\|SQI94477.1\|1679542_1680850_-\|tRNA:m(5)U-54-MTase-gid	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
LS483482.1\|SQI94475.1\|1677974_1678517_-\|ATP-dependent-protease-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	5.8233e-117
LS483482.1\|SQI94473.1\|1675729_1676503_-\|GTP-sensing-transcriptional-pleiotropic-repressor-codY	gnl\|CDD\|235230	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY.	1.32073e-157
LS483482.1\|SQI94594.1\|1684673_1685909_-\|FmhA-protein-of-FemAB-family	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	6.16464e-163
LS483482.1\|SQI94595.1\|1685922_1687071_-\|cell-wall-hydrolase	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	1.32083e-13
LS483482.1\|SQI94598.1\|1689473_1690241_-\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	3.52714e-100
LS483482.1\|SQI94601.1\|1693961_1696568_+\|integral-membrane-protein	gnl\|CDD\|226888	COG4485, COG4485, Predicted membrane protein [Function unknown].	0
LS483482.1\|SQI94471.1\|1673660_1674539_-\|Translation-elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	5.24908e-161
LS483482.1\|SQI94600.1\|1691365_1693957_+\|membrane-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	4.52507e-111
LS483482.1\|SQI94596.1\|1687266_1688175_-\|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
LS483482.1\|SQI94476.1\|1678517_1679411_-\|Site-specific-tyrosine-recombinase	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	2.09162e-132
LS483482.1\|SQI94602.1\|1696769_1697120_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.6598e-69
LS483482.1\|SQI94597.1\|1688196_1689363_-\|Succinyl-CoA-ligase-[ADP-forming]-beta-chain	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
LS483482.1\|SQI94472.1\|1674722_1675511_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	3.92574e-174
LS483482.1\|SQI94474.1\|1676524_1677928_-\|ATP-dependent-protease-ATP-binding-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
LS483482.1\|SQI94599.1\|1690224_1691109_-\|50S-ribosomal-subunit-maturation-GTPase-RbgA	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	3.10427e-161
LS483482.1\|SQI94470.1\|1672801_1673524_-\|Uridylate-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	1.19892e-144
LS483482.1\|SQI94592.1\|1680901_1682971_-\|DNA-topoisomerase-I	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
LS483482.1\|SQI94593.1\|1683142_1684057_-\|SMF-family-protein	gnl\|CDD\|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	5.7955e-83

>LS483482.1|SQI94593.1|1683142_1684057_-|SMF-family-protein
MHWQVIMSKKGSGLVDDIVLLKLRYSGIQAPQFQRLIHGYPNFLSFSEDDLLNLLSKTEIKKWFGDIAAQYKRISEDYILTSLYDASVKFITINSQCYSTLLKEIYDFPPILFYRGDISLLNSNTTLAVVGSRKATSYSYKALDFLFSQFNRRFTIVSGLAKGADSMAHELAIQHHHATIAVLGFGHLTHYPKETYILRQKIEAHHLSISEYLPFEPVTKYHFPQRNRLISGISKGVLITEAEKRSGSQITIAHALDQNRNVYVLPGDLFNPLTQGNLYRAREGACIVTGAEDILMDYDINKVF
>LS483482.1|SQI94592.1|1680901_1682971_-|DNA-topoisomerase-I
MADNLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGVDVDDNFEPKYITIRGKGPVVKELKKHAKKAKKVFLASDPDREGEAIAWHLSNILELEDSKENRVVFNEITKDAVKESFKHPRDIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDRENEIRNFKPEEYWTIEGEFRYQKSKFTAKFLHYKNKPFKLQNKDDVNKVTAKLDGDQFEITNVNKKEKTRNPAQPFTTSTLQQEAARKLNFKARKTMMIAQQLYEGIDLKRQGTVGLITYMRTDSTRISDAAKNEAKSYITENYGSNYVSKRQAKGKQGDQDAHEAIRPTSAMRTPNEMKSYLSRDQHRLYKLIWERFVASQMAPAILDTVALDVTQNDIKFRANGQTIKFKGFMTLYVEAKDDKENDKENKLPNLKEGDKVTATQIEPAQHFTQPPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKLDSKRFVPTELGEIVYEQVKEYFPEIIDVEFTVNMETLLDKIAEGDMKWRKVIDDFYNSFKLDVARAEKEMEKIEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNTKAIVKTIGVTCPTCKKGDVVERKSKKNRIFYGCSNYPECDFISWDKPIGRDCPKCEHYLVEKKKGRSSQVVCSNCDYQEEAQK
>LS483482.1|SQI94477.1|1679542_1680850_-|tRNA:m(5)U-54-MTase-gid
MTQTVNVIGAGLAGSEAAYQLAQRGINVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNALTNAVGVLKEEMRRLDSLIIKAADQAKVPAGGALAVDRHDFAGYVTDALRSHPNVTVLNEEITQIPDGHSIIATGPLTTSSLAQEIVNITGKDQLYFYDAAAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPMTEEEFNRFYDAVLAAEVAPVNEFEKEKYFEGCMPFEVMAERGRKTLLFGPMKPVGLEDPKTGKRPFAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIQLIPGLENVEIVRYGVMHRNTFINSPDVLNEKYELIGNEHIQFAGQMTGVEGYVESAASGLVAGVNLAHKLLAKGEVIFPRETMIGSMAYYISHAKNDKNFQPMNANFGLLPVLEKRIKDKKERYETLANRALEYLEKYKKTL
>LS483482.1|SQI94476.1|1678517_1679411_-|Site-specific-tyrosine-recombinase
MNEIQKAFLYMLKVERNFSDHTIKSYHDDLMQFNEFLAQEMLTLSTFEYKDARNYLSYLYNKNLKRTTVSRKISTLRSFYEYWMTQDETVINPFVQLVHPKKEQYLPQFFYEAEMDALFETVLHDAKKGLRDRVILELLYSTGMRVSELVHIKKMDIDLTLPGVKVLGKGSKERFLPFGEFCKQSIEQYLLEFGPVKQNDHPFLLVNMNGQPITERGVRYVLNDIVKRTAGVTDIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSKDQLRKVYLNAHPRAKKERN
>LS483482.1|SQI94475.1|1677974_1678517_-|ATP-dependent-protease-HslV
MSTSIHATTIYAVRHNGEAAMAGDGQVTLGQQVIMKQTARKVRRLYDDKVLAGFAGSVADAFTLFEKFETKLQQFSGNLERAAVELAQEWRGDKQLRQLEAMLIVMDKSGILVVSGTGEVIAPDDDIIAIGSGGNYALSAGRALKRHAAHLSAKEMAYESLKVASDICVFTNDNIIVETL
>LS483482.1|SQI94474.1|1676524_1677928_-|ATP-dependent-protease-ATP-binding-subunit-HslU
MDTNGIKLTPKDIVSQLNEYIVGQDDAKRKVAIALRNRYRRSLLDEETKQEIAPKNILMIGPTGVGKTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKNQKKAMVKDEAVAKANDKLVKLLVPSMKKKAAQGNNPLENLFGGAIPNFGNNQEDEEEPPTEEIKTKRSEIRQQLLAGKLEDEKVRIKVEQDPGALGMLGTNQNQQMQDMMNQLMPKKKVEREVPVKTARNILADDFADELIDQETANQEAIELAEQMGIIFIDEIDKVATNNQSSGQDVSRQGVQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLTVNDFYRILTEPKLSLVKQYEALLKTEEVTVNFTDGAITKLAEIAYQVNQDTDNIGARRLHTILEKMLEDLSFEAPNMPNAVVDITPQYVDEKLKSISTNKDLSAFIL
>LS483482.1|SQI94473.1|1675729_1676503_-|GTP-sensing-transcriptional-pleiotropic-repressor-codY
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISNVTVTNVFIVSRRGKILGSSLNELLKSERINQMLESKHIPEEYTEQLMEVKQTQSNIDIDNVLTVFPPEDRETFINSRTTVFPILGGGERFGTLVLGRVKDDFNENDLVLGEYAATVIGMEILREKHNEVEKEARDKAAINMAINSLSYSEKEAIEHIFEELGGNEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGTFIKVKKEKFLDELERNK
>LS483482.1|SQI94472.1|1674722_1675511_-|30S-ribosomal-protein-S2
MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVEEAYNFIKQVSEDGGKVLFVGTKKQAQESVKAEAERAGQFYVNQRWLGGILTNYKTISKRIKRISEIEKMEEDGLFDVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQALFVVDPRKERNAIAEARKLNIPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTGKMADAVLEGQQGVSNEEVAAEQNIDLDEKEEAKDAETTEENTSVESN
>LS483482.1|SQI94471.1|1673660_1674539_-|Translation-elongation-factor-Ts
MAISAKLVKQLRERTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGLVHVEVKGNEAAIVEINSETDFVARNEGFQELVKEIANQILDTKPESVDALMETKLPNGHSVDEKMKEAISTIGEKLSIRRFAVKSKSDNDAFGAYLHMGGRIGVLSVVEGSTDEEAAKDVAMHIAAINPKYVSSEQVSEDEINHEREVLKQQALNEGKPANIVEKMVEGRLRKYLQEICAVDQNFVKDPDQTVEAFLKSKGGKLVDFVRYEVGEGMEKREENFADEVKGQMK
>LS483482.1|SQI94470.1|1672801_1673524_-|Uridylate-kinase
MTQTSKYKRVVLKLSGEALAGEKGFGINPIIIKSVAEQVAEVAKMDCEIAVIVGGGNIWRGKTGSDLGMDRGTADYMGMLATVMNALALQDSLEQLDCDTRVLTSIEMKQVAEPYIRRRAIRHLEKKRVVIFAAGIGNPYFSTDTTAALRAAEVEADVILMGKNNVDGVYSADPKVDPNAVKYEHLTHIQMLQEGLQVMDSTASSFCMDNNIPLNVFSIMEEGNIKRAVMGEKIGTLITK
>LS483482.1|SQI94594.1|1684673_1685909_-|FmhA-protein-of-FemAB-family
MNFTTLTCEEFNTYVSKHFSHYTQSIQLYEYRKQQHKGVHLVGVKNIYGEVIAACLLTEARVLKIFKYFYSHRGPVMDYNDLSLVKFFFKHLTRYLKKQRGLFVLIDPYILENIRNAEGEIIHTYNNEKLIDTMHRLGYEHQGFSVGYSDMSQIRWHSVLNLQQKSEDQLLKEMSYQTRRNINKTFEMGVEVITLPIEETDRFYRLFKMAEEKHGFNFREESYFEEMQKIYHDNGCIKLAYINLTDYLTRLEKQRQKLIVLLNDVKETLEINPNSKKSKTKYQQLTQQLASIDKNIAKTQDLQQEDGNILDLAAALYVYNNHEMYYLSSGSNPKYNQYMGAYRLQWDMICFAKSHHIHRYNFYGITGDFSSQAEDYGVQQFKKGFNAFVEEYIGDFIKPLRPWLYKFYSRK
>LS483482.1|SQI94595.1|1685922_1687071_-|cell-wall-hydrolase
MERQQLYCKKVINPKVLITSLIFFASFLMIGELNHAWAAEETVNSQKNINVNNTINLVEKNSLKSVDDKASYKETINNKISVFNNENKKGNLIGNKTKKRNIIVNYSDSKHNQKTTKNNKFKLSNDYLNRKDRNNTNIKITKSKDSKEKPQKQLLNKTFSNSGLVGFRSAENYNERTQNYVVKKGDYLGAIAKKFNTTVSKIQKLNNIKNPNFILIGQVLKVPFISSNNSSTNTNRRNNSSSTLNYLNSLAYKGWDFDGAYGNQCFDLVNVYWNHLYGHGLRGYGAKDIPFANNFRGEATVYRNTPTFKAELGDVAVFSGRYGGGFGHTAIVLNGNYDGKLMKFQSLDQNWYGGDSRRADIAHKVVHNYDYDMYFIRPYKKA
>LS483482.1|SQI94596.1|1687266_1688175_-|Succinyl-CoA-ligase-[ADP-forming]-alpha-chain
MSVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVAEAKQETGANVSVVYVPAPFAADSILEAADADLDMVICITEHIPVVDMVKVKRYLEGRKTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNDDEETKAVVMIGEIGGTAEEEAAEWIKANMTKPVVGFVGGQTAPPGKRMGHAGAIISGGKGTAAEKIKTLNSCGVKTADTPSEIGTTLIAAAKEAGIYEQLLTIDK
>LS483482.1|SQI94597.1|1688196_1689363_-|Succinyl-CoA-ligase-[ADP-forming]-beta-chain
MNIHEYQGKEIFRSMGVAVPEGRVAFTAKEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYANELLGKQLVTHQTGPEGKEVKRLYIEQGCDIQKEYYVGFVIDRATDRITLMASEEGGTEIEEVAATTPEKIFKETIDPVVGLSPYQARRIAFNINIPKESINKAAKFLISLYNVFVEKDCSIVEINPLVTTGDGEVLALDAKINFDDNALFRHKDIQELRDLEEENPKEIEASKYDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDVGGGATKEKVTEAFKIILGDDNVKGIFVNIFGGIMKCDVIAEGIVAAVKEVELTLPLVVRLEGTNVERGKEILNDSGLAIEPAATMAEGAQKIVKLVKEA
>LS483482.1|SQI94598.1|1689473_1690241_-|ribonuclease-HII
MKITIKEAKAQLNKVTTLEALSNHALHLDERKGVKQAIRVRQRQLEKELKLEQDYQRMMKYEQEILQQQPDAIICGIDEVGRGPLAGPVVACAVILNANHHYLGLNDSKKVSAVNRAQLNQDLMANVRGYAYGIASAAEIDQLNIYRATQVAMQRAINQLQVRPTHLLIDAMSIDSTISQTAIIKGDAKSVSIAAASIMAKEYRDHLMRDYAQVYPYYGFDKNVGYGTKAHLAGLKQYGVTPIHRRTFEPVKSML
>LS483482.1|SQI94599.1|1690224_1691109_-|50S-ribosomal-subunit-maturation-GTPase-RbgA
MAIQWYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKEMSKWEHYFVEQGFYPVAVDAKHGKNLKGVEAAAIEATKDKFAKEQAKGLKPRAIRAMIVGIPNVGKSTLINKLARKNIAQTGNKPGVTKQQQWIKVGKVLQLLDTPGILWPKFEDELVGKKLSLTGAIKDSIVHLDDVAIFGLNFLIQHDIETLRQHYHISVEEDAAILEWFDAIGRRRGLLQKGNEVDYEAVIELLINDLRNAKMGTYCFDLYSEMKRDIAHENND
>LS483482.1|SQI94600.1|1691365_1693957_+|membrane-protein
MTKKLLMIMLFLTLAIIGHTYILYRFIHDGILFTGPNDGIEQMIPMQMYLYDKWSQGQFFYATDFGLGGDFFSDLSYYFSTNLLFIINAIIIYITNLIVSLPTGNVTFWTINAIVISIVKATIAMLVTYLFSMRIVKHRVNSSLIAFLFVMSPLYYRFTVYWPFFSDVFIGLPLLLYAIEHMLQQKKIGLLILAITIIMINNFYFAYYFLLIGAGYLLIRITFAHKDDRMKRITALWLSVLCAFLGLANALFMFYYSAQSYINNRRIPYKDHVPVFESLNINNNIFIDNYLIILLFITIQALLTFKLYKHYYFRLFAFLTCITILFNFMPIVDQIFNGFSAPQKRWHFLLAFNSAMVIGLFIKYFSTIRIKTYIWTNIVAQLAVFISVIVYHQYVPWLVLVPIVSLIGLFTLIIKDATSRLIIKQIYVFSIISLSILVSAVFIKNQIYFKDHEQRANNMYIHSSLYNSELQRQLLSYMTHTKEPWERIDWRVNEQDNTPMYQKFRGLSLYSSIFHHNILDLYYDNLKINLAEESLSRYQSTNGRQNIASLFSVRYMMLKDYQNNLPAYFQKIKSSGQYAIYENKLNLPAVKVTNHLYNDQSIKTSIDREHAMLDGVIVHNGGNNYHKHSKNLLNKVSQSSQHIQCLSNKHIKVNSQQGGTIKLHLPKSIRQHYTDFYLTMYIKRGQPDSNYSVAINGYVNHRLYNQSTYRTGVNTQLYRTQPDENGNISIQLTPSGTFDMKLISLHGENYHKLVQTHRQANFDHRYQDIHDGVRITLAPHSQGMAVVNIPYRKGMMAYVDGKRINPIRVNTMMTGIPVKKSTTSIIIKYLPPHWIVMLLLSSISILCSIMITRIFTKKRKDEE
>LS483482.1|SQI94601.1|1693961_1696568_+|integral-membrane-protein
MQKRTVQAMKTFVMITLISFIATLIIYFPFIKDWISKGYVFSGVGDGFRQMMPFQMYLYEHYTQLKGFYDHSFGLGGDYVKSLAYYYSLSPTMWCNFIMIWLGERLLHWNPHVIGFWPFNQLIVALGRSLLTFICAFYYFRYLKLKQAPLMIATILYGASTVGLYYNFTWSFYGDLLIFLPLSLWGMERFFQRGKIGVFIVAIAITLFSNFYFSYYQAIVLGIYFLLRIIFEYRYDIVTRWQKFYLLMFGTILALFSSIIGFYTGVSSFLNNDRQQNSDFKISLFTDLTQDNYYIFSNGFYITISIIALVALLSFKLYKHYYYKLFAIITWFLLIGSLTQYFDSAFNGFSLPQRRWVYFLVLSTSALMALHIQHISELSIKQYCFAAIPVFIFGLCRYLFAEHFVNWMLISLILIIILALLVWRKKWLYHPLVLLGIVVIFFVQQVVMTIESSKRTIGPYSTTMSTITDPSYYNTKLAKVIQQINHKNNNPLHRIDYMSFYALNSPFIYHYNGISLYSSIFDGSILNYYDHLMQINMPVDKNSTYRYLSNRANLEALWNVQDRFRHPNDLNIPYGFKKIDTIKNGNDTLIHSKNTINYPATHVTNKVFNASDLKSPLDREQAMLQGIVPSDGSIKANTAFKANQNLIDEAKRSTHNATWLNHSRLKVDKNNGGVTYTLPKNVAKKYKDLYVEMDVELLTPDKNHEVGVNEYVQDRNELTYKYRRFVTPVTMRIKAADKLNIHLSQGTYRLSVKGIYGEDYSSLQQSAKDLKAVSVKENKNGYTISKSKSTSGYVVLPMVYADGMKATVNGRNEDVKKVNGIMTAIPVNKGDTNIRLTYTPPHWHLLFIMSILGIFLSIAFRFWVKRKV
>LS483482.1|SQI94602.1|1696769_1697120_-|50S-ribosomal-protein-L19
MSNHKLIEAVTKSQLRTDLPSFRTGDTLRVHVRIIEGSRERIQVFEGVVIKRRGGGISETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRNLRGKAARIQEIR
>LS483482.1|SQI94603.1|1697225_1697963_-|tRNA-(guanine37-N1)--methyltransferase
MKIDYLTLFPEMFEGVLNHSILKRAQDKGIINVNTINFRDYAVNKHNQVDDYPFGGGQGMVLKPEPVFNAMKDIQHNDETRVILMCPQGRPFTQKIAQELSSTEHIVFICGHYEGYDERIREHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNQQSHQDDSFSDGLLEFPQYTRPREFQGMTVPDVLLSGNHAHIEKWRHKQKLIRTYLKRPDLLMAYPLSEQDKEIIESFKKQLKKG

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Crispr_ID: LS483482_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483482_4

2191356-2191445

Orphan

Consensus_repeat	Method
CAGCACAAAGAAATGCACCAAGCATTTCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483482_4

>merge|LS483482|4|2191356-2191445|CRISPRCasFinder
CAGCACAAAGAAATGCACCAAGCATTTCTACGTGCAACGCAAGCTGGGGTGGGGCCCTCAGCACAGAGAAATGCACCAAGCATTTCTACG

>LS483482|4|4|2191356-2191445|CRISPRCasFinder
CAGCACAAAGAAATGCACCAAGCATTTCTACG	TGCAACGCAAGCTGGGGTGGGGCCCT
CAGCACAGAGAAATGCACCAAGCATTTCTACG

Protein	Signature genes	Signature genes Name	Protein_function
LS483482.1\|SQI96337.1\|2188917_2189460_-\|acetyltransferase-GNAT-family	unknown	unknown	gnl\|CDD\|379112
LS483482.1\|SQI96327.1\|2188319_2188886_+\|lysine-decarboxylase	unknown	unknown	gnl\|CDD\|129813
LS483482.1\|SQI96343.1\|2193588_2194443_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
LS483482.1\|SQI96345.1\|2195891_2196359_-\|cupin-superfamily-protein	unknown	unknown	gnl\|CDD\|380376
LS483482.1\|SQI96324.1\|2185962_2186835_+\|UDP-diphosphatase	unknown	unknown	gnl\|CDD\|234712
LS483482.1\|SQI96322.1\|2183983_2184916_-\|putative-cobalamin-synthesis-protein	unknown	unknown	gnl\|CDD\|223597
LS483482.1\|SQI96323.1\|2185140_2185581_+\|transcriptional-regulator-MgrA-(Regulator-of-autolytic-activity)	unknown	unknown	gnl\|CDD\|197670
LS483482.1\|SQI96349.1\|2200264_2200507_-\|putative-integral-membrane-protein-that-interacts-with-FtsH	unknown	unknown	gnl\|CDD\|223742
LS483482.1\|SQI96340.1\|2190659_2191349_+\|membrane-protein	unknown	unknown	unknown
LS483482.1\|SQI96341.1\|2191798_2192284_-\|putative-glycine-zipper-protein	unknown	unknown	gnl\|CDD\|225395
LS483482.1\|SQI96339.1\|2189995_2190241_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483482.1\|SQI96354.1\|2200448_2200919_-\|transporter	unknown	unknown	gnl\|CDD\|223742
LS483482.1\|SQI96326.1\|2187857_2188304_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
LS483482.1\|SQI96344.1\|2194893_2195508_-\|Protein-of-uncharacterised-function-(DUF402)	unknown	unknown	gnl\|CDD\|225188
LS483482.1\|SQI96348.1\|2197811_2199956_-\|AraC-family-regulatory-protein	unknown	unknown	gnl\|CDD\|225117
LS483482.1\|SQI96338.1\|2189573_2189870_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483482.1\|SQI96346.1\|2196358_2197075_-\|putative-DUF28-containing-protein	unknown	unknown	gnl\|CDD\|237084
LS483482.1\|SQI96325.1\|2187172_2187853_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483482.1\|SQI96342.1\|2192285_2193503_-\|sugar-efflux-transporter	unknown	unknown	gnl\|CDD\|341024
LS483482.1\|SQI96347.1\|2197308_2197668_-\|accessory-regulator	unknown	unknown	gnl\|CDD\|130944

Protein	Function_ID	Function_description	E-value
LS483482.1\|SQI96337.1\|2188917_2189460_-\|acetyltransferase-GNAT-family	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.74006e-29
LS483482.1\|SQI96327.1\|2188319_2188886_+\|lysine-decarboxylase	gnl\|CDD\|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	1.16199e-50
LS483482.1\|SQI96343.1\|2193588_2194443_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	3.0942e-36
LS483482.1\|SQI96345.1\|2195891_2196359_-\|cupin-superfamily-protein	gnl\|CDD\|380376	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain. This family includes eukaryotic, bacterial, and archaeal proteins homologous to YML079wp, a Saccharomyces cerevisiae cupin-like protein of unknown function that structurally resembles plant seed storage and ligand-binding proteins (canavalin, glycinin, auxin binding protein) as well as the bacterial RmlC epimerase. YML079wp is non-essential in yeast and localizes to the nucleus and cytoplasm. The presence of a hydrophobic ligand within a well-conserved binding pocket inside the cupin beta-barrel and sequence similarity with bacterial epimerases suggests a possible biochemical function for YML079wp and its homologs. Also included in this family are Shewanella oneidensis So0799, Agrobacterium fabrum Atu3615 and Branchiostoma belcheri Bbduf985. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold and forms a homodimer.	9.76517e-64
LS483482.1\|SQI96324.1\|2185962_2186835_+\|UDP-diphosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	6.07379e-99
LS483482.1\|SQI96323.1\|2185140_2185581_+\|transcriptional-regulator-MgrA-(Regulator-of-autolytic-activity)	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.01316e-22
LS483482.1\|SQI96349.1\|2200264_2200507_-\|putative-integral-membrane-protein-that-interacts-with-FtsH	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	1.84364e-08
LS483482.1\|SQI96342.1\|2192285_2193503_-\|sugar-efflux-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.25709e-99
LS483482.1\|SQI96341.1\|2191798_2192284_-\|putative-glycine-zipper-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	5.14599e-36
LS483482.1\|SQI96354.1\|2200448_2200919_-\|transporter	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	1.00092e-10
LS483482.1\|SQI96326.1\|2187857_2188304_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.06337e-75
LS483482.1\|SQI96344.1\|2194893_2195508_-\|Protein-of-uncharacterised-function-(DUF402)	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	2.22959e-63
LS483482.1\|SQI96348.1\|2197811_2199956_-\|AraC-family-regulatory-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.14465e-19
LS483482.1\|SQI96322.1\|2183983_2184916_-\|putative-cobalamin-synthesis-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	2.15576e-65
LS483482.1\|SQI96346.1\|2196358_2197075_-\|putative-DUF28-containing-protein	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	4.77188e-137
LS483482.1\|SQI96347.1\|2197308_2197668_-\|accessory-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.04097e-13

>LS483482.1|SQI96340.1|2190659_2191349_+|membrane-protein
MKSTSQLMRENNVKSLRLNNTDREIFENYMTYVRAELSVNPYDSELMLNRILKQLLKAEDNGTLALEFFNHDPKAHAKQEIRALPNETINNIFNYIYQNFMFLIGIFCFCKGFIGFFIGGNNNRIYLYTFPIIVIIGLFIIFLFIWMIFKTVQLQCFNNKNLVWILTYIVIGLLISALVYVFFIPQSFLAIGPYITISNWHFIIASLIITPIAFYTKHRHTNKNANTRL
>LS483482.1|SQI96339.1|2189995_2190241_-|Uncharacterised-protein
MQSTSSDDDKDNKEKTSDKSKEKSSQHQTTHHQNKDQQNQHQNSNNTDNTQTDKDKTHKQQSSQSTKNDTQKQSKQPKQQQ
>LS483482.1|SQI96338.1|2189573_2189870_-|Uncharacterised-protein
MHEQDFRILEGQDITLPELGRELETLTGRTIVDSTGEINRVVAHLPNFDSDFDTFVATYKLNHQNDFIDAIFTAPKAQRNRLKEIPVHIELISYISKA
>LS483482.1|SQI96337.1|2188917_2189460_-|acetyltransferase-GNAT-family
MTVYIETERLKLRDWEENDLLPFQKLNANPQVRRYFPSLLSYRRSALDMKQMQKNITATGIGLFAVELKETNEWIGFIGLNYIPKDSQYPFNNLPFYEIGWRLIPEVWGNGIATEGAEAVLKYAQKKGVYDIYSLTAETNLSSRKVMEKIGMKVFDRFEFPELNKYHPLKMQVRYYKNLK
>LS483482.1|SQI96327.1|2188319_2188886_+|lysine-decarboxylase
MKKIAVFCGASKGSNPTYVNEAYNLGKYMAQKGYELIFGAGSVGIMGAIQNGVLDHNGTVIGVMPKELDTKEITSQRVSELILVDSLHQRKEKMAELADAFILAPGGAGSLEEFFEIYSWTQIGIYQKPIGIYNLNGFFEPLHQLIIHMIQEGFIDEKYKALAPLYHTKEDLLHGLQNAKPLGERSYD
>LS483482.1|SQI96326.1|2187857_2188304_+|YaiI/YqxD-family-protein
MTSIIIDGDACPVIQSVIELTSGTGIFVIIVRSFSHYTTQTYPEHVNTIYVDDGPDAVDYKIVQLAQSKDIVITQDYGLASLLLNKVKTVLHHKGYIYNSTNIDMLIQQRYNHAQLRKQSGRHKGPTPFSNKDQQHFEHIFRRVLSQI
>LS483482.1|SQI96325.1|2187172_2187853_+|Uncharacterised-protein
MDQKKRHLIKTLINVLPIFIVPLVTERKHIKNHSEVKKVTAATSRASKTVANKATDVKEFVIDKKQEHDNKRELKKIAKENDPEYIEKKGEKLAKKNRKEADKMDKKLQKNIEQRHKEEAKAREKNEKQRIKDLKKTQKYQEKVGLTPGALDDETEKKGEKLAKDNKHDIKKLAKKLQKNIEQRHHDEEKNRDKNKKARIKEIKNYEEHDAQSVTKQNNKETHHES
>LS483482.1|SQI96324.1|2185962_2186835_+|UDP-diphosphatase
MFLLELIKGIILGIVEGLTEFAPVSSTGHMILMDDMWLKSTDFLGSESAFTFKVVIQLGSVFAAAWVFRERFFELLHIGKQHQAPISEEFRSKPRRLNLLHVLVGMIPAGILGLMFDDLIEKYLFSVPTVMIGLFLGAIYMIIADKYSEKVKHPQNVDQINYFQAFVIGISQAIAMWPGFSRSGSTISTGVLMKMNHKAASDFTFIMSVPIMLAASGLSLIKHYEYIHLAHIPFYLLGFLAAFIVGLIAIKTFLHLINKIKLVPFAIYRIILVVIIAILYFGFGIGKGIY
>LS483482.1|SQI96323.1|2185140_2185581_+|transcriptional-regulator-MgrA-(Regulator-of-autolytic-activity)
MSEHHNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLSILWDESPVNVKKVVTELALDTGTVSPLLKRMEHVDLIKRERSEVDQREVFIHLTEKSEGIKPDLKDASSKVATASSLSADEAQELNRLLGKVINAFTENKE
>LS483482.1|SQI96322.1|2183983_2184916_-|putative-cobalamin-synthesis-protein
MKKHNCRNTYISIVSGFLGSGKTTFLQEYMQYLLKTDEKITIIMNEFGTFDVDSLTFNNEVAINALVNGCVCCDLKADLVAQLKNIIADGQTTHIIIEATGIAHPLEIMMACQDPEVIHLISEVKMIGILDASRFLHRHRYSLTTVELMEEQLAYSSTIIINKMDLINDQEQKKLSAELTQINPQATTCYTTFGQLDITTFNNIKHVDNMKSLAKHAHHHGIKSMQYTFSGPIDRQLFYQFILKLPQNVFRLKGFVRFRDRANVIYEFQYAHGLPSYGEVDKEVPLTIVIIGEHIDVERLRNNLDMLQFT
>LS483482.1|SQI96341.1|2191798_2192284_-|putative-glycine-zipper-protein
MTVLLWLLIIFAFILAFVGLIKPVIPSVLMLWVGFLIYQFAFNNGELSWIFYVSMIVLTVLMFISDFAMNKYFVNKYGGSKISEYVALIGVLVGCFVFPPFGIIIIPFVAVFAVELMQDFDVNKAFKASLGSIVAFLTSNIAKAIIMFIMIVWFFIDVFVI
>LS483482.1|SQI96342.1|2192285_2193503_-|sugar-efflux-transporter
MFKALLHIKNYKLFVVNMMLLGMGIAITVPYFVLFATNELGMTTNQFGILLALAAVSQFTINSIVARFSDTHNINRKFLIITALFMGAVSFSIYFYIHDIWLFIITYAIFQGLFAPAMPQLYASARESINISSSRKNAKFANTVLRSMFSFGFLFGPLIGSRLIHFNGYAGLFGGTVAIILFTLLLQVFFYQDLKLTGEQQVGGTAHIETTAPNMLKDVTLFLPFVAFILLHIGQWMYTMNMPLFVTKQLHISEDYVGTLASLCAGLEVPFMVILGMLATKLQTRTLLIVGALSGGAFYFSIGIFNNIYMMMLGQVFLAFFLAILLGLGISYFQDILPDFPGYASTLFANAMVIGQLCGNLLGGAMSQWVGLENVFFVSASSIFIGMVLIFFTKDQKFTEEKVIS
>LS483482.1|SQI96343.1|2193588_2194443_-|LysR-family-transcriptional-regulator
MKIEDYRLLITLDETKTLRKAAELLYISQPAVTQRLKAIENNFGVDIFIRTKKQLITTTEGAMIIEHARDMLKRERLFYDKMQAHIGEVNGTISIGCSSLIGQTLLPDVLSLYNTQFPNVEIQVQVGSTEHIKAHHRDYHVMITRGNKVMNLTNTHLFNDEHYFIYPKDKRAEVDKLPFIEFQADPIYINQIKEWYNDNLGQDFHATITVDQVGTCKEMLLSGVGVTILPEVMMKYIDKNQFECEKVLIEGQPLIRSTFMSYEANMLQLPQVDSFVNLMYNFIR
>LS483482.1|SQI96344.1|2194893_2195508_-|Protein-of-uncharacterised-function-(DUF402)
MKVKYIDKRHWRRLIEREYIEVKVNNKRFKGIIGLVTMNKVREPLEVTVVGKHMVVADDHYQWLQILPEKKRYSITAMFDDKGQPLEYYFDINIKNITQKGNARTLDLFLDVLVLPTGKYELVDEDDLMNALVNEQITKRQYHEAYMIAHQLMIEINDNFDELERRIMHCYRKMNQKKHKAKRHHHQAPQPQQRHKRKKRFTED
>LS483482.1|SQI96345.1|2195891_2196359_-|cupin-superfamily-protein
MISAEEWINRLELMPHPEGGYYKETLRPDDKKRASYSSIYFLLKDADVSHFHRIDADEVWYHHSGETLLIHMITTEGKYYVEQLGQNVADGDVLQCVVPKGTIFASSLKHSKGYGIVGCMCQPAFEFEHFELLAQAILLEKYPQHQEIIKAYAVE
>LS483482.1|SQI96346.1|2196358_2197075_-|putative-DUF28-containing-protein
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPDPNSNQALRLVLERAKTYSVPNHIIDKAIDKAKGAGEENFDHLRYEGFGPSGSMIIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDDTATFAIEGKSADDVLEALMEQDVDVRDVIDEDGLTVVYAEPDQFAQVQEALRAIGVEEFKVAEFEMLPQTDIELSAEDQETFEKLVDALEELEDVQNVFHNVDLK
>LS483482.1|SQI96347.1|2197308_2197668_-|accessory-regulator
MSKDKLNQLLNLYKKHKLLSEYIDKKYKLTLNDLAVLKLAKDYTSEEKVLMQSFLKLAIEELDLSRTKLLVSIRRLIDKEKLSKQRSEEDERKIFIYMNDDNIESFNDLFKDVEELLEI
>LS483482.1|SQI96348.1|2197811_2199956_-|AraC-family-regulatory-protein
MTNTFFRILTKEEYQPTRCIDGIIVILPIQGDLTIQHFANSTTISDEIYIINNKDIFTIKQNHKSLMLYITSDWFKNHDYVFFDYKYSVNLIKSINKLKQLMLKIAINYINQMPITSNENYIKQMVEVIATEGSVDLETAENQYKFLFYGELSQILEYINKHSHEKLTLNALSQNLFTSKSNISAQFHQNLNMGFKQYVDSLKIAESIEYLLTENSTISHISDKLGFSNSASYTKMFKSYIGITPNDYRSLNIKDKYLLMNYEVLSEDNEQHLKTVLRQQINYYQENIERKIFIDNNKVKTNQNFELVTQINTVEEFKELFFIKIKGKANINTENLIIYVNFGIGTLINNLSDAEIGDMFKKIAANNLHIAFKIQSLEIMDYIERIYVQVVERLNYKKSLANGDRGIIMLVFDMEVIELKEIYRLILKIQNKQFGLRFGLDISCLLNETVMFKTLESQIKRIGFDYLFIDNAHLEQPYLLEDSQHLLLKNILEYQNIEKILTQIDLSYSKVIFLNIENHQFLNNENDLSNSAPLIIETFLKTAELFDGMGVNLYFSRNSFNAIHIFDENGFKTVLGIIIGQIKWMMNQSRTIKDNYIVVENEAQYTLFLYDWRVFESEASITYFGDTEVLIHFEEVAEQSIRLIKSEKVDEKNGNINHIINRHIREKYNWTQELLKEIEDHLHTTMRIIEHDFRKDYFKVNLGYDSLRIIKIFK
>LS483482.1|SQI96349.1|2200264_2200507_-|putative-integral-membrane-protein-that-interacts-with-FtsH
MFVTLLALIVASLIGLFIHNPVFYTVITVVSLFLFLLYTLYDFNRMKRGQFSPREMGFNLFINLLNIILDILSLANRFRN
>LS483482.1|SQI96354.1|2200448_2200919_-|transporter
MNDFSKKQRHMTDHSQSKSWAYSQVWLYFMYYWLIFGIGCYFGQYLPDEWRMPLSIGLLVLIFSTLIFKRARKYGLIISHIYAIIVGLLSYAMFTTYLQNLGADVFYKNIVLAIGAFVIFGVIGFFFIKDASSIRKIFVCNITGTDCSISYWTVYS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483482_1	1.1\|739287\|31\|LS483482\|CRISPRCasFinder	739287-739317	31	LS483482.1	1785495-1785525	1	0.968
LS483482_1	1.1\|739287\|31\|LS483482\|CRISPRCasFinder	739287-739317	31	LS483482.1	781915-781945	2	0.935
LS483482_1	1.1\|739287\|31\|LS483482\|CRISPRCasFinder	739287-739317	31	LS483482.1	1819283-1819313	2	0.935
LS483482_3	3.1\|1684448\|28\|LS483482\|CRISPRCasFinder	1684448-1684475	28	LS483482.1	1804266-1804293	2	0.929

1. spacer 1.1|739287|31|LS483482|CRISPRCasFinder matches to position: 1785495-1785525, mismatch: 1, identity: 0.968

ggcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
ggcccccaacacaaagaaatgcatcaagcat	Protospacer
*********************** *******

2. spacer 1.1|739287|31|LS483482|CRISPRCasFinder matches to position: 781915-781945, mismatch: 2, identity: 0.935

ggcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
gggccccaacaaaaagaaatgcaacaagcat	Protospacer
** ******** *******************

3. spacer 1.1|739287|31|LS483482|CRISPRCasFinder matches to position: 1819283-1819313, mismatch: 2, identity: 0.935

ggcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
gggccccaacaaaaagaaatgcaacaagcat	Protospacer
** ******** *******************

4. spacer 3.1|1684448|28|LS483482|CRISPRCasFinder matches to position: 1804266-1804293, mismatch: 2, identity: 0.929

ggggccccaacaaagagaatttcgaaat	CRISPR spacer
ggggccccaacaaagaggctttcgaaat	Protospacer
*****************. *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483482_2	2.1\|1028048\|29\|LS483482\|CRISPRCasFinder	1028048-1028076	29	NC_018265	Melissococcus plutonius DAT561 plasmid 1, complete sequence	120055-120083	6	0.793
LS483482_1	1.1\|739287\|31\|LS483482\|CRISPRCasFinder	739287-739317	31	NC_007058	Staphylococcus phage ROSA, complete genome	41574-41604	8	0.742
LS483482_1	1.1\|739287\|31\|LS483482\|CRISPRCasFinder	739287-739317	31	KT186243	Staphylococcus phage vB_SauS_phi2, complete genome	37495-37525	8	0.742
LS483482_1	1.1\|739287\|31\|LS483482\|CRISPRCasFinder	739287-739317	31	AY954955	Bacteriophage 42e, complete genome	41355-41385	8	0.742
LS483482_1	1.1\|739287\|31\|LS483482\|CRISPRCasFinder	739287-739317	31	AY954961	Bacteriophage ROSA, complete genome	41574-41604	8	0.742
LS483482_1	1.1\|739287\|31\|LS483482\|CRISPRCasFinder	739287-739317	31	NC_007052	Staphylococcus phage 42e, complete genome	41355-41385	8	0.742
LS483482_1	1.1\|739287\|31\|LS483482\|CRISPRCasFinder	739287-739317	31	AP013478	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S26-C62	18066-18096	9	0.71
LS483482_2	2.1\|1028048\|29\|LS483482\|CRISPRCasFinder	1028048-1028076	29	MT774376	CrAssphage cr55_1, complete genome	42412-42440	9	0.69
LS483482_2	2.1\|1028048\|29\|LS483482\|CRISPRCasFinder	1028048-1028076	29	MT774380	CrAssphage cr1_1, complete genome	46180-46208	9	0.69

1. spacer 2.1|1028048|29|LS483482|CRISPRCasFinder matches to NC_018265 (Melissococcus plutonius DAT561 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.793

caaagactttccaaaagaaagtccacgaa	CRISPR spacer
aaaagactttccataagaaagtctaaata	Protospacer
 ************ *********.* . *

2. spacer 1.1|739287|31|LS483482|CRISPRCasFinder matches to NC_007058 (Staphylococcus phage ROSA, complete genome) position: , mismatch: 8, identity: 0.742

ggcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
agttaccaacacaaagaaacgcaccaaggaa	Protospacer
.*.. **************.*** **** *

3. spacer 1.1|739287|31|LS483482|CRISPRCasFinder matches to KT186243 (Staphylococcus phage vB_SauS_phi2, complete genome) position: , mismatch: 8, identity: 0.742

ggcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
agttaccaacacaaagaaacgcaccaaggaa	Protospacer
.*.. **************.*** **** *

4. spacer 1.1|739287|31|LS483482|CRISPRCasFinder matches to AY954955 (Bacteriophage 42e, complete genome) position: , mismatch: 8, identity: 0.742

ggcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
agttaccaacacaaagaaacgcaccaaggaa	Protospacer
.*.. **************.*** **** *

5. spacer 1.1|739287|31|LS483482|CRISPRCasFinder matches to AY954961 (Bacteriophage ROSA, complete genome) position: , mismatch: 8, identity: 0.742

ggcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
agttaccaacacaaagaaacgcaccaaggaa	Protospacer
.*.. **************.*** **** *

6. spacer 1.1|739287|31|LS483482|CRISPRCasFinder matches to NC_007052 (Staphylococcus phage 42e, complete genome) position: , mismatch: 8, identity: 0.742

ggcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
agttaccaacacaaagaaacgcaccaaggaa	Protospacer
.*.. **************.*** **** *

7. spacer 1.1|739287|31|LS483482|CRISPRCasFinder matches to AP013478 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S26-C62) position: , mismatch: 9, identity: 0.71

ggcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
gatgagttacataaagaaatgcaaaaagcat	Protospacer
*..   . ***.************ ******

8. spacer 2.1|1028048|29|LS483482|CRISPRCasFinder matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 9, identity: 0.69

caaagactttccaaaagaaagtccacgaa	CRISPR spacer
taaagactttcctaaagaaagtatttatc	Protospacer
.*********** ********* . ..

9. spacer 2.1|1028048|29|LS483482|CRISPRCasFinder matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.69

caaagactttccaaaagaaagtccacgaa	CRISPR spacer
taaagactttcctaaagaaagtatttatc	Protospacer
.*********** ********* . ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

580611 : 605143

Bacillus_phage(40.0%)

tRNA,holin,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI89461.1\|580611_582135_+\|tRNA	putative nucleic acid binding OB-fold tRNA /helicase-type	NA	NA	NA	NA
SQI89462.1\|582151_583690_+	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
SQI89463.1\|583941_585519_-	ferredoxin-dependent glutamate synthase	NA	NA	NA	NA
SQI89464.1\|585834_586599_+	abortive infection family protein	NA	NA	NA	NA
SQI89465.1\|586621_587401_+\|protease	metal-dependent membrane protease	NA	NA	NA	NA
SQI89466.1\|587527_588190_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-18	35.7
SQI89467.1\|588182_588959_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
SQI89468.1\|589448_590912_-	sensor kinase	W8CYF6	Bacillus_phage	5.7e-10	22.2
SQI89469.1\|590904_591582_-	DNA-binding response regulator	NA	NA	NA	NA
SQI89470.1\|591739_591967_+	membrane protein	NA	NA	NA	NA
SQI89471.1\|592093_593269_+	Chloramphenicol resistance protein	NA	NA	NA	NA
SQI89472.1\|593425_594775_-	carboxylesterase type B	NA	NA	NA	NA
SQI89473.1\|594895_595492_+	molecular chaperone GroEL	NA	NA	NA	NA
SQI89474.1\|595655_596708_-	zinc dependent dehydrogenase	A0A2K9L7I1	Tupanvirus	5.3e-10	24.2
SQI89475.1\|597094_598345_+\|holin	Osmotically activated L-carnitine/choline ABC transporter ATP-binding protein OpuCA	Q6GZ03	Mycoplasma_phage	1.4e-20	51.6
SQI89476.1\|598344_598980_+\|holin	Osmotically activated L-carnitine/choline ABC transporter permease OpuCB	NA	NA	NA	NA
SQI89477.1\|599002_599944_+\|holin	Osmotically activated L-carnitine/choline ABC transporter substrate-binding protein OpuCC	NA	NA	NA	NA
SQI89478.1\|599943_600624_+\|holin	Osmotically activated L-carnitine/choline ABC transporter permease OpuCD	NA	NA	NA	NA
SQI89479.1\|601059_601680_+	tandem five-TM protein	NA	NA	NA	NA
SQI89480.1\|601756_602383_+	tandem five-TM protein	NA	NA	NA	NA
SQI89481.1\|602452_603088_+	tandem five-TM protein	NA	NA	NA	NA
SQI89482.1\|603084_603396_+	EsaC protein analog	A0A1X9I6T6	Streptococcus_phage	3.6e-15	41.9
SQI89483.1\|603528_603762_+	tandem five-TM protein	NA	NA	NA	NA
SQI89484.1\|603809_604169_+	tandem five-TM protein	NA	NA	NA	NA
SQI89485.1\|604441_605143_-\|holin	antiholin-like protein LrgB	NA	NA	NA	NA

DBSCAN-SWA_2

1149272 : 1179525

Staphylococcus_phage(96.15%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI92943.1\|1149272_1150667_+	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.5e-169	62.3
SQI92944.1\|1150673_1151678_+	O-succinylbenzoate-CoA synthase	A0A2H4PQM0	Staphylococcus_phage	2.3e-95	51.7
SQI92945.1\|1151674_1151932_-	Putative cytosolic protein	A0A2H4PQM5	Staphylococcus_phage	1.2e-29	70.4
SQI92946.1\|1151998_1152472_+	low G+C gram positive nudix hydrolase YtkD	A0A2H4PQM4	Staphylococcus_phage	2.6e-49	60.6
SQI92947.1\|1152452_1153226_+	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	5.0e-98	69.4
SQI92948.1\|1153289_1154882_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	8.8e-275	86.0
SQI92949.1\|1155253_1156450_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	1.7e-198	87.4
SQI92964.1\|1156548_1157457_+	Uncharacterised protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-102	76.6
SQI92965.1\|1157571_1158405_+	oxidoreductase of aldo/keto reductase family, subgroup 1	A0A2H4PQR8	Staphylococcus_phage	2.1e-118	72.6
SQI92966.1\|1158589_1158943_-	CrcB-like protein	NA	NA	NA	NA
SQI92967.1\|1158939_1159305_-	protein crcB	A0A2H4PQR0	Staphylococcus_phage	2.0e-33	62.0
SQI92969.1\|1159373_1159679_-	membrane protein	NA	NA	NA	NA
SQI92971.1\|1159935_1160649_+	Transaldolase	M1PR54	Cyanophage	1.1e-19	36.3
SQI92972.1\|1160779_1161232_+	putative staphylococcal protein	A0A2H4PQT8	Staphylococcus_phage	1.6e-16	43.6
SQI92974.1\|1161494_1161659_-	Uncharacterised protein	NA	NA	NA	NA
SQI92975.1\|1161674_1162145_-	putative DNA-binding protein	A0A2H4PQT5	Staphylococcus_phage	1.6e-27	45.5
SQI92976.1\|1162342_1162567_+	putative staphylococcal protein	NA	NA	NA	NA
SQI92978.1\|1162768_1163623_+	Autolysin	A0A1W6JNR1	Staphylococcus_phage	7.5e-39	42.1
SQI92979.1\|1164006_1165506_+	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2H4PQX2	Staphylococcus_phage	9.9e-18	77.2
SQI92980.1\|1165772_1166924_+	diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A2H4PQS8	Staphylococcus_phage	4.6e-124	62.9
SQI92981.1\|1166931_1167564_+	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	1.4e-77	70.5
SQI92982.1\|1167576_1168758_+	3,4-dihydroxy-2-butanone 4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	8.5e-174	75.1
SQI92983.1\|1168770_1169229_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.6e-58	80.9
SQI92984.1\|1169306_1170293_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	7.2e-134	72.6
SQI92985.1\|1170509_1171343_+	Lysophospholipase/Monoglyceride lipase	NA	NA	NA	NA
SQI92986.1\|1171836_1172238_+	Repressor of toxins Rot	NA	NA	NA	NA
SQI92987.1\|1172288_1172852_-	SAM-dependent methyltransferase, MraW methylase family	A0A2H4PQV0	Staphylococcus_phage	3.5e-69	67.4
SQI92988.1\|1172848_1173802_-	Fe-S oxidoreductase	A0A2H4PQV5	Staphylococcus_phage	3.2e-70	86.1
SQI92989.1\|1173905_1175081_+	Multidrug resistance protein	A0A2H4PQR6	Staphylococcus_phage	5.8e-175	78.5
SQI92990.1\|1175402_1177817_+\|tRNA	Leucyl-tRNA synthetase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	87.1
SQI92991.1\|1177835_1178147_+	Rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	6.5e-33	68.0
SQI92992.1\|1178265_1179525_-	NAD(FAD)-utilizing dehydrogenase	A0A2H4PQX1	Staphylococcus_phage	2.2e-42	83.5

DBSCAN-SWA_3

1296242 : 1305261

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI93178.1\|1296242_1297247_+	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	3.8e-05	29.1
SQI93180.1\|1297249_1298275_+\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
SQI93182.1\|1298293_1299433_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.2e-85	45.0
SQI93184.1\|1299451_1299712_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.8e-05	39.3
SQI93185.1\|1299897_1302186_+	putative protein-export membrane protein	A0A1B1IVP7	uncultured_Mediterranean_phage	2.8e-32	34.4
SQI93187.1\|1302446_1304723_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	4.3e-65	28.8
SQI93189.1\|1304742_1305261_+	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.4e-27	45.8

DBSCAN-SWA_4

1430932 : 1439629

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI93850.1\|1430932_1431664_+	Segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.1e-06	24.0
SQI93851.1\|1431656_1432190_+	Segregation and condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	3.5e-10	29.1
SQI93852.1\|1432192_1432933_+	ribosomal large subunit pseudouridine synthaseB	NA	NA	NA	NA
SQI93853.1\|1433079_1433805_+	transcriptional regulator srrA	W8CYM9	Bacillus_phage	3.4e-48	43.5
SQI93854.1\|1433788_1435537_+	Staphylococcal respiratory response protein SrrB	A0A1V0SGX0	Hokovirus	3.2e-20	31.6
SQI93855.1\|1436260_1436803_+	substrate-specific component RibU of riboflavin ECF transporter	NA	NA	NA	NA
SQI93856.1\|1436944_1437193_-	Ferredoxin	A0A127AYY7	Bacillus_phage	5.8e-16	49.3
SQI93857.1\|1437303_1438263_+	Uncharacterised protein	NA	NA	NA	NA
SQI93858.1\|1438249_1439629_+	ATP-dependent DNA helicase RecQ	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	1.6e-51	33.2

DBSCAN-SWA_5

1844149 : 1852619

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI94928.1\|1844149_1844716_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.4e-27	39.2
SQI94929.1\|1844715_1845747_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	6.7e-66	44.1
SQI94930.1\|1845739_1847224_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	3.2e-45	30.8
SQI94931.1\|1847202_1849392_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	2.6e-136	37.8
SQI94932.1\|1849384_1850056_-	phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit	NA	NA	NA	NA
SQI94933.1\|1850057_1850318_-	phosphoribosylformylglycinamidine synthase, PurS protein	NA	NA	NA	NA
SQI94934.1\|1850317_1851022_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	G8EYA2	Synechococcus_phage	4.0e-46	42.4
SQI94935.1\|1851022_1852150_-	phosphoribosylaminoimidazole carboxylase ATPase subunit	NA	NA	NA	NA
SQI94936.1\|1852136_1852619_-	phosphoribosylaminoimidazole carboxylase catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	6.8e-21	42.7

DBSCAN-SWA_6

2129550 : 2147347

uncultured_Caudovirales_phage(58.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI96014.1\|2129550_2130504_-	FecCD family protein	A0A2H4J116	uncultured_Caudovirales_phage	2.5e-06	62.5
SQI96015.1\|2130490_2131474_-	FecCD family protein	A0A2H4IY97	uncultured_Caudovirales_phage	5.8e-136	79.3
SQI96016.1\|2132028_2133063_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA
SQI96017.1\|2133179_2133944_-	iron ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.8e-15	30.5
SQI96018.1\|2133958_2134918_-	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	4.1e-09	62.0
SQI96019.1\|2134898_2135876_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.4e-144	81.4
SQI96267.1\|2136244_2137213_-	ribonucleotide reductase of class Ib (aerobic), beta subunit	A0A2H4J4P3	uncultured_Caudovirales_phage	7.4e-176	92.9
SQI96268.1\|2137452_2139558_-	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
SQI96270.1\|2139520_2139919_-	ribonucleotide reduction protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	4.3e-53	76.5
SQI96271.1\|2140792_2141662_+	Integral membrane domain protein	NA	NA	NA	NA
SQI96272.1\|2141674_2142175_+	NADPH dependent preQ0 reductase	E7DN65	Pneumococcus_phage	1.0e-51	70.8
SQI96273.1\|2142432_2143965_+	putative proton-dependent oligopeptide transport protein	A0A0P0IY73	Acinetobacter_phage	2.3e-62	34.1
SQI96274.1\|2144292_2145207_+	Diacylglycerol kinase catalytic domain-containing transcription regulator	NA	NA	NA	NA
SQI96275.1\|2145252_2145450_+	Uncharacterised protein	NA	NA	NA	NA
SQI96276.1\|2145523_2146054_-	5'(3')-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	4.4e-29	38.4
SQI96277.1\|2146291_2147347_-	aromatic amino acid aminotransferase subunit beta	A0A0H3TLT9	Faustovirus	3.0e-21	27.7

DBSCAN-SWA_7

2161869 : 2168490

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI96301.1\|2161869_2163021_-	para-aminobenzoate synthase	S4VNU7	Pandoravirus	6.0e-23	35.1
SQI96302.1\|2163004_2163601_-	Para-aminobenzoate synthase, amidotransferase component PabAb	A0A0P0IKJ1	Acinetobacter_phage	1.4e-39	44.5
SQI96303.1\|2163936_2164608_+	queuosine biosynthesis QueC ATPase	A0A2H4J8Q7	uncultured_Caudovirales_phage	7.9e-68	57.5
SQI96304.1\|2164609_2165029_+	queuosine biosynthesis QueD, PTPS-I	NA	NA	NA	NA
SQI96305.1\|2165028_2165745_+	queuosine biosynthesis QueE Radical SAM	A0A1U9WRB6	Streptococcus_virus	1.8e-49	40.7
SQI96306.1\|2165843_2166434_+	Uncharacterised protein	NA	NA	NA	NA
SQI96307.1\|2166474_2167497_-	CsbB stress response protein	A0A192Y8W7	Salmonella_phage	5.4e-60	41.9
SQI96308.1\|2167653_2168490_-	oxidoreductase of aldo/keto reductase family, subgroup 1	A0A2H4PQR8	Staphylococcus_phage	9.6e-63	44.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483482

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection