CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483485	Aggregatibacter aphrophilus strain NCTC11096 genome assembly, chromosome: 1	2 crisprs	cas3,DEDDh,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	1	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483485_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483485_1

1769904-1770045

Orphan

Consensus_repeat	Method
ACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGCCTCGTTTCCCGCTCCA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LS483485_1

>merge|LS483485|1|1769904-1770045|CRISPRCasFinder
ACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGCCTCGTTTCCCGCTCCATTCTCAACATCAAGTTATGCGGGAATAGCTCAGTTGGTAGAGCACAACCTTGCCAAGGTTGGGGTCGCGAGTTCGAGCCTCGTTTCCCGCTCCA

>LS483485|1|1|1769904-1770045|CRISPRCasFinder
ACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGCCTCGTTTCCCGCTCCA	TTCTCAACATCAAGTTATGCGGGAATAGCTCAGTTGGTAGAGCACA
ACCTTGCCAAGGTTGGGGTCGCGAGTTCGAGCCTCGTTTCCCGCTCCA

Protein	Signature genes	Signature genes Name	Protein_function
LS483485.1\|SQI99197.1\|1779781_1780876_-\|Domain-of-uncharacterised-function-(DUF697)	unknown	unknown	gnl\|CDD\|235449
LS483485.1\|SQI99193.1\|1775946_1776903_+\|tRNA-dimethylallyltransferase	unknown	unknown	gnl\|CDD\|234626
LS483485.1\|SQI99188.1\|1769210_1769756_+\|Oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
LS483485.1\|SQI99192.1\|1774096_1775944_+\|DNA-mismatch-repair-protein-mutL	unknown	unknown	gnl\|CDD\|234630
LS483485.1\|SQI99173.1\|1762509_1762875_-\|Inner-membrane-protein-ybaN	unknown	unknown	gnl\|CDD\|377291
LS483485.1\|SQI99174.1\|1763007_1765047_+\|Oligopeptidase-A	unknown	unknown	gnl\|CDD\|182832
LS483485.1\|SQI99171.1\|1760066_1760864_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483485.1\|SQI99191.1\|1772639_1774097_+\|N-acetylmuramoyl-L-alanine-amidase-AmiB-precursor	unknown	unknown	gnl\|CDD\|236692
LS483485.1\|SQI99189.1\|1770258_1771884_+\|Putative-phosphoethanolamine-transferase-ybiP	unknown	unknown	gnl\|CDD\|293741
LS483485.1\|SQI99176.1\|1765746_1767474_-\|Phosphoenolpyruvate-protein-phosphotransferase	unknown	unknown	gnl\|CDD\|183017
LS483485.1\|SQI99170.1\|1758296_1758950_+\|GTP-cyclohydrolase-2	unknown	unknown	gnl\|CDD\|234745
LS483485.1\|SQI99195.1\|1777346_1778729_+\|GTP-binding-protein-HflX	unknown	unknown	gnl\|CDD\|182934
LS483485.1\|SQI99198.1\|1780886_1782293_-\|Predicted-ATPase	unknown	unknown	gnl\|CDD\|225648
LS483485.1\|SQI99177.1\|1767613_1767871_-\|Phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|182777
LS483485.1\|SQI99194.1\|1777029_1777332_+\|RNA-binding-protein-Hfq	unknown	unknown	gnl\|CDD\|179001
LS483485.1\|SQI99175.1\|1765185_1765686_-\|Glucose-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|181859
LS483485.1\|SQI99179.1\|1768098_1769139_-\|Putative-ribosome-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
LS483485.1\|SQI99172.1\|1760902_1762471_-\|Periplasmic-oligopeptide-binding-protein-precursor	unknown	unknown	gnl\|CDD\|173869
LS483485.1\|SQI99190.1\|1772116_1772593_+\|ADP-binding-protein	unknown	unknown	gnl\|CDD\|182615
LS483485.1\|SQI99196.1\|1778725_1779685_-\|Transcriptional-regulatory-protein-tyrR	unknown	unknown	gnl\|CDD\|225821

Protein	Function_ID	Function_description	E-value
LS483485.1\|SQI99197.1\|1779781_1780876_-\|Domain-of-uncharacterised-function-(DUF697)	gnl\|CDD\|235449	PRK05415, PRK05415, hypothetical protein; Provisional.	2.56761e-154
LS483485.1\|SQI99193.1\|1775946_1776903_+\|tRNA-dimethylallyltransferase	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	5.67612e-165
LS483485.1\|SQI99188.1\|1769210_1769756_+\|Oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	3.29982e-134
LS483485.1\|SQI99173.1\|1762509_1762875_-\|Inner-membrane-protein-ybaN	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	3.66935e-40
LS483485.1\|SQI99174.1\|1763007_1765047_+\|Oligopeptidase-A	gnl\|CDD\|182832	PRK10911, PRK10911, oligopeptidase A; Provisional.	0
LS483485.1\|SQI99192.1\|1774096_1775944_+\|DNA-mismatch-repair-protein-mutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
LS483485.1\|SQI99191.1\|1772639_1774097_+\|N-acetylmuramoyl-L-alanine-amidase-AmiB-precursor	gnl\|CDD\|236692	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional.	1.81298e-106
LS483485.1\|SQI99189.1\|1770258_1771884_+\|Putative-phosphoethanolamine-transferase-ybiP	gnl\|CDD\|293741	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase. Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase catalyzes the modification of the lipid A headgroups by phosphoethanolamine (PEA) or 4-amino-arabinose residues. Lipopolysaccharides, also called endotoxins, protect bacterial pathogens from antimicrobial peptides and have roles in virulence. The PEA modified lipid A increases resistance to the cationic cyclic polypeptide antibiotic, polymyxin. Lipid A PEA transferases usually consist of a transmembrane domain anchoring the enzyme to the periplasmic face of the cytoplasmic membrane.	5.47876e-76
LS483485.1\|SQI99176.1\|1765746_1767474_-\|Phosphoenolpyruvate-protein-phosphotransferase	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
LS483485.1\|SQI99170.1\|1758296_1758950_+\|GTP-cyclohydrolase-2	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	2.81711e-134
LS483485.1\|SQI99195.1\|1777346_1778729_+\|GTP-binding-protein-HflX	gnl\|CDD\|182934	PRK11058, PRK11058, GTPase HflX; Provisional.	0
LS483485.1\|SQI99198.1\|1780886_1782293_-\|Predicted-ATPase	gnl\|CDD\|225648	COG3106, COG3106, Predicted ATPase [General function prediction only].	0
LS483485.1\|SQI99177.1\|1767613_1767871_-\|Phosphocarrier-protein-HPr	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	6.74062e-37
LS483485.1\|SQI99194.1\|1777029_1777332_+\|RNA-binding-protein-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	3.41317e-43
LS483485.1\|SQI99175.1\|1765185_1765686_-\|Glucose-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	1.97946e-103
LS483485.1\|SQI99179.1\|1768098_1769139_-\|Putative-ribosome-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
LS483485.1\|SQI99172.1\|1760902_1762471_-\|Periplasmic-oligopeptide-binding-protein-precursor	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.59008e-139
LS483485.1\|SQI99190.1\|1772116_1772593_+\|ADP-binding-protein	gnl\|CDD\|182615	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE.	1.94729e-60
LS483485.1\|SQI99196.1\|1778725_1779685_-\|Transcriptional-regulatory-protein-tyrR	gnl\|CDD\|225821	COG3283, TyrR, Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism].	4.51275e-161

>LS483485.1|SQI99188.1|1769210_1769756_+|Oligoribonuclease
MELDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQPDELLNKMSEWCVKTHTANGLVERVKASKLNERAAELQTLDFLKKYVPKGTSPICGNSVAQDKRFLFKYMPELADYFHYRHLDVSTLKELAARWKPEILNGFTKQNTHLALDDIRESIKELAYYREHFLNI
>LS483485.1|SQI99179.1|1768098_1769139_-|Putative-ribosome-biogenesis-GTPase-RsgA
MSKPKLTQNQKRRIQSNNNKVLHRHQKKEIEWRDDMLGESQEGLVVTRYARHADVENAQGEIFRCNLRRTLSGVVVGDHVIWRQGNEQLQGVSGVIEGIHPRKNEISRPDYYDGIKVIAANIDRIIIISSVLPSLSLNIIDRYLVVCEEANIEPIIVLNKVDMLTEAQWLEADELLAIYRKIGYQTLMLSAQSGKNLEKLTALLSHGVSIFVGQSGVGKSSLINAVLPHVDAQVGEVSATSGLGQHTTTSSCLYHLPQGGSLIDSPGIREFGLWHLEEEQITKGYREFQTVLGTCKFRDCKHLSDPGCALCQAVEEGKISTVRYENYHRLLASRNEMKSQRHFSSE
>LS483485.1|SQI99177.1|1767613_1767871_-|Phosphocarrier-protein-HPr
MYSKDVEITAPNGLHTRPAAQFVKEAKAFASDITVSSAGKSASAKSLFKLQTLALTQGTVITISAEGEDAEKAVEHLVALIPTLE
>LS483485.1|SQI99176.1|1765746_1767474_-|Phosphoenolpyruvate-protein-phosphotransferase
MISGIPASPGIVFGKALVLKEEKIVLDTQKIKDSQIENEIARFYAGRDAAVEQLNSIKDRAYQSLGEEKAAIFEGHLMILEDEELEEEIIDYLRSNHVNAAVAANVVIDQQVAMLSEIDDEYLKERAGDIRDIGNRLIKNILGMHIVDLGEINEEAILVAYDLTPSETAQLNLDKVLGFVTDIGGRTSHTSIMARSLELPAIVGTNNVTEKVKTGDFLILDALNNAVYVNPSQQEIQRLKTLQDKLAEEKAELAKLKDLPALTLDGHQVDVVANIGTIRDVEGAERNGAEGVGLYRTEFLFMDRDQLPSEEEQFIAYKEVVEAMNGNLVVLRTMDIGGDKELPYLNLPKEMNPFLGWRAIRIALDRREILNAQLRAVLRASAYGRLAVMFPMIISVEEIRELKSVIEELKVELRNEGKAFDEDIQVGIMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGDERATILLLGMGLDEFSMSAISVPRIKKLIRNVNYQDAKLLAEKALQQPTAAEIEQLISDFLAEKALN
>LS483485.1|SQI99175.1|1765185_1765686_-|Glucose-specific-phosphotransferase-enzyme-IIA-component
MGLFDKLFGSKDKKAVDVEIYAPLSGEIVNIEDVPDVVFSEKIVGDGVAIRPTGNKLVAPVDGVVGKIFETNHAFSMESKEGVELFVHFGIDTVELKGEGFTRVAQEGQSVKRGDTIIELDLPLLEAKAKSVLTPVVISNMDEISNIEKKSGEVVAGDSVVLVLKK
>LS483485.1|SQI99174.1|1763007_1765047_+|Oligopeptidase-A
MSNPLLTPTDLPAFSKIEPQYIEPAIKQLIEENRATVEHLLKQPHFTWENFILPLAEAGDRLSKVWSPISHLNSVKNSPELREAYQACLPLLAEYGTWVGQHQGLYEAYLQLKNSPEFANYSQAQKKAIENSLRDFKLSGISLPAEKQKRYGEIVARLSELTSQFSNNVLDATMGWEKIIEDESQLKGLPESALQAAKQSAESKGLSGYRFTLEFPSYIPVMTYCENRELREEMYHAFATRASDQGPNAGKWDNSALMQEILSLRVDLAKLLDFNTYTELSLATKMAETPQQVLDFLTNLAQRSKAQGKRELQELKDFCKTHYNLTALELWDLTFYSEKQKQHLYAINDEELRPYFPEERVLNGLFELIKRIFHIRAVERHGVETWHKDVRFFDLIDDTNEVRGSFYLDLYAREHKRGGAWMDDCIGRRKTIDGNLQKPVAYLTCNFNRPLGDQPALFTHDEVTTLFHEFGHGLHHMLTKIDVADVAGINGVPWDAVELPSQFMENWCWEEEALQFISGHYQTNEPLPKEKLTQLLKAKNFQAAMFVLRQLEFALFDFRLHHTFDANKSNQVLDTLHQVKAEVAVVPTVDWGRMPHSFSHIFAGGYAAGYYSYLWAEVLSADAYSRFEEEGIFNAQTGQSFLDEILTKGGSEEPMKLFKNFRGREPQLDALLRHKGIAN
>LS483485.1|SQI99173.1|1762509_1762875_-|Inner-membrane-protein-ybaN
MKYFYIGLGFLFLIIGLIGIVLPILPTTPFLLLTVFFFAKGSERVHNWFVGTKIYQNHLKDFHEQRALTKKTKMAILTFSTTMLLIGFYFTPSIIGKSLIIAVLLIKYWFFFFWIKTLEEE
>LS483485.1|SQI99172.1|1760902_1762471_-|Periplasmic-oligopeptide-binding-protein-precursor
MPVAHFPLSAFRLFPFKSVVLFCSVFALNACDKKPQEPVTPPPTIETVQLQLISSQGNRQLLVRGVYSDLVLNPSQAVNAEQFAFLRDLFEGLVIYDQRGNVIPAVAESWQTTDNKTWKFSLRQDAKWSNGEPVTAQQFVASWQALVTSNSPLRHYLAYINLANAESVLKGKLPADKLGISAENDRTLRLTLDKATPYLPQMLVHISLLPQYLAPHEGIVTNGAYQVAGQENHFIHLEKNPHYWAQDKVAFKHVDYQKIASQQDPIALDLVINPSKTEQAQYFPQLCTYFYAFNMKQPKLAQSSVRKALSMMAPSRNMNNEGKNFIYLSDNFLPISMQTVESHWEQTPMEQLLSQSKISEKAPLKLTLSYDQTELQSKIAQSLIRMWSQSDMIRIIGEGMPRQKLLENIAKGDFQIARSGWCADYNDPAAFLSLFYSHSPDNKSGYHNEEVDRLFEQSLQLMPSAERTTLYSRIEQILQQEKVVLPLYQTTVPIYINPTINGYYLSNPTEVIYSKDLFRKIQ
>LS483485.1|SQI99171.1|1760066_1760864_+|Uncharacterised-protein
MLKTLSKVISSSISMAFLVVLGWSVAYAYGWGQSYFYGFPWWYVDVGSGNVARSLGYVIWATIILLLTYLIGLFGLKKVKPYMSERCVNLLRTYILCTIFFIPIPVACILLVGKLNSIFAIVYIITTFIFTLLFKNYFRNHISTISIHVVIRFFHRNKSYVMLFMYCYFVIFGFIMGYVRPNFKIIFDSMEVEKQSYYVLAKYSDTFILSRSIRATNGDFYIYKMNPNSICHIKVVDIRKLGIDKMAPKEIELKEVKAEEANTEL
>LS483485.1|SQI99170.1|1758296_1758950_+|GTP-cyclohydrolase-2
MAKIELVAQANLPTEFGLFKIVGFEFPDSKKEHVALVLGDISNGDEPVLARIHSECLTGDALHSLKCDCGFQLAAALRQINQEGRGVLIYHREEGRGIGLINKIRAYSLQDQGMDTIEANLALGFAADERNFSVCADIFDLLGVKKIRLLTNNPEKIETMKQAGINVVERVPLNVGENRYNTAYLDTKAKKMGHFIVHNGEQHLMECPYCQEEVPKK
>LS483485.1|SQI99189.1|1770258_1771884_+|Putative-phosphoethanolamine-transferase-ybiP
MFKKFLSYLNSRIFWIWLLFFSFITLIISPENSAYYGIFVIYIIYYLIFSFNQKIFWLFITFVVITLSLYQPIYSSYGNLNSGVVAAFFETNPAESFEFLGKLKIDQFILPFLFSLSAYILYRLREQANPQREITEKDIKYKKILNITLISVTIFSIIWIPTKFHFENSSKEQVDSHWTLANSPVNLISFYANIIDSITDYYNDKKDLETAKDVLPPWHIISTQPKYKNYVLIIGESARKDYMSTYGFKLPTTPFLDKTNGYINAGYVSAAPATYHSLLNTLHFKPKEKGKKDYSYNIISLAKVAGIKTFWLSNQGTIGKYDTLASRLGIGADFHYFTKKGGFITNNADDFKLLEELKIKFKEKAYENDTRLFVIHLMGSHRNFCQRITDKEKKLEFINESLSCYVNTILKTDKLIEEIVNVLKEQNEPYSLIYFSDHGLSHVNKENKKEVDLDFGEEHKQNFEVPFVKISSDDTSREVVNVKRSAFNFIYGFSQWLGIETKELNQEYNFFSNKNDENIKVFNFKENIPYSTLKNDDIPNL
>LS483485.1|SQI99190.1|1772116_1772593_+|ADP-binding-protein
MTERFTQYIPNENAMCVFGEKLIKAICQVSNNKSVALYLNGDLGAGKTTLSRGMIQGLGYSDNVKSPTYTLVEEYKIGGKIIYHFDLYRLADPEELEFMGIRDYFAENTICLIEWAEKGAGLLASADLLVNIAYAENARNIELLAESETGRQIIQQLN
>LS483485.1|SQI99191.1|1772639_1774097_+|N-acetylmuramoyl-L-alanine-amidase-AmiB-precursor
MHGLLFFAVLAFADNTWTIAIDPGHGGKDPGAIGRNLKIYEKNVTLSIAKELKALLDKDPHFRAVLTRNGDYYISVPQRSEIARKYKANYLVSIHADSSETPNLRGASVWVLSNRRANDEMGQWLEDHEKRSELLGGAGSVLASHNEKYLDQTVLDLQFGHSQRVGYELGNIVLRHFSQIASLSRPTPRHASLGVLRSPDIPSILVETGFLSNQEEELKLSTPAYRKRIAKAIYNGLAEYRRKNVKDEPKVAIADKNEKTSEKSTALEVKDSGIRHTVKSGEGLGKLAEKYHVSTADIIALNKLKRKALWGGETIKIPDNGKNIPTIEDKSVKTKENNIVEVKDSGVRHKVKRGETLGKLAEKYKVSVNDILTLNKLKRKELLIGENLKIPAIAKAETSNKTEKGKETETPKPVDKSPKTQGKTKPEVKEVVPKFHTVKKNETLYSIAREYKIAPNKLLKLNPQLKNGKVLSGQKIKLTEDQGKK
>LS483485.1|SQI99192.1|1774096_1775944_+|DNA-mismatch-repair-protein-mutL
MTIRVLSPQLANQIAAGEVVERPASVVKELVENSLDAGADKIQIDIENGGAGLIRIRDNGIGIAKEELALALARHATSKIADLADLEAILSLGFRGEALASISSVSRLTLTSRTAEQHEAWQVYAQGRDMETTIQPASHPIGTTVEVANLFFNTPARRKFLRSEKTEFSHIDEVIRRIALAKFNISFTLTHNGKVLRQYKSAMTNEQKLKRVATICGDDFIQNALQIDWKHDDLHLSGWVALPHFNRPQNDLNYCYVNGRMVRDKIITHAIRQAYAEYLSNDQYPAFVLFIDLNPNDVDVNVHPTKHEVRFHQSRLVHDFITQGISHALTSESLDFSATETERKIQEPMGLWEVSSKPNRSAAGPNMFTQPSTYSTGYRVEKQPSEDTYHSSQKHRQNPPHFNRDNITPSVLDAHKHLWMDSTAPSRSKITISEDSKPQSTCLHALALVGNHALLLQQEQHFYLLSLSRLQRLKLKLNLTLTATSQPLLIPVIFRLSETQWQAWQQQKAWFTQVGFDFLAEDAQRKITLQKVSAHLRRQNLQQLIIALLNEPVENLSEFLTALLAQLDFPPIQVLADAVTMLTEIEQLLNKQSHIQLSDLFLEINWQPYLTQLAD
>LS483485.1|SQI99193.1|1775946_1776903_+|tRNA-dimethylallyltransferase
MMQHSEHKPTAIFLMGPTASGKTDLAIQLRQQLPVEVISVDSALIYRGMDIGTAKPTAEELALAPHRLIDICDPAESYSAMNFCHDALREMQDITAQGKIPLLVGGTMLYYKALLEGLSPLPSADEKVRSEIETKAMQIGWSGLHQELAKIDPISAQRINPNDSQRINRALEVFYLTGKTLTELTAQKGEALPYDILQFAIAPEQREVLHLRIEQRFHKMIELGFQQEVEKLYQRSDLNENLPSIRSVGYRQMWEYLRGDYDHKEMIFRGICATRQLAKRQITWLRGWKSPIQWLDSLHPTQALEKVLVSVNSLSDKQ
>LS483485.1|SQI99194.1|1777029_1777332_+|RNA-binding-protein-Hfq
MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAISTVVPARSVAHHNANQQQQHQQGQQQEAPSSVETNTDAQTE
>LS483485.1|SQI99195.1|1777346_1778729_+|GTP-binding-protein-HflX
MDNLLGNLTQSAVDSGNVSTAFSMPENSTQTSDHTINNAIIVHCFFEQSKNTDDLTEFQLLAKSANVHILNVITATRSTPQAKYFIGSGKAEEIADAVRQYNADLILVNHSLTPAQARNLEALCDCRVVDRNGLILDIFAQRARSHEGKLQVELAQLKHLSTRLVRRKTGLDQQKGAVGLRGPGETQLETDRRLIKVRINQLQSRLEKVDKQRNQNRQTRQKADIPTISLVGYTNAGKSTLFNLITDANVYAADQLFATLDPTLRRLTLQDVGTTILADTVGFLRDLPHDLISAFKSTLQETTEASLLLHVIDCADNRKLENIEAVNQVLEEIGAQEVPRLLVYNKIDQLENVVPHIEYDEKHLPSAVYISANSGSGLDLLLEAIRLRLTEHILNLQIRLPPSDGKLRHAFYQLNCVEKEEINEQGEFLLSIRLEKTEWLKLVKRFTQLTPFNPIQPDEN
>LS483485.1|SQI99196.1|1778725_1779685_-|Transcriptional-regulatory-protein-tyrR
MTTSKNTDPFAQIVSKNPRMQDVIEKAKKFALLDVPLLIQGETGTGKDVIAKACHDFSERRDHAFLAVNCAGIPGEDAETEMFGRRNKDGEFIGFFEYADGGTVLLDGVEELSLTLQAKLLRFLSDGTFRRVGEEEERYANVRVICTSQQPLQHYVEQGKMRSDLFHRLNVLSLNLPLLRERKEDLALLSHQLIQEISEKLGIFPPHFDENVLRYLQEYPWPGNIRELYNALYRACSLCQNNQLRIEDLGLASQIPHSQDIDQFITEGDTLDEMVGRFEAAVLNKFYAKYPSSRKLATRLGVSHTAIANKLRQYGIGKS
>LS483485.1|SQI99197.1|1779781_1780876_-|Domain-of-uncharacterised-function-(DUF697)
MEKKVFTQNESDMNEDLNAQSAFIAKQEFHEEQAVPDTEDENGIFEGELLEQQFEQSLQPKPRWWKKILGGVSLLFFVASVAQSVQWLVDAWQQNQWIYFAFSLVACAVILLGVSAIAGEWRRLAKLRHRAEIQTQSQQLLKSAVNFKDVFSSAEHQQAVSLCQEVTKLVHIDGQNPDFMQWQKQIHEAYSAREILHLFSQNVLQPVDKQAKKLITKASTESAALVAISPLELVDIFFIAWRNIRLINQIARIYGIELGYFSRIRLLRMVLVNMAFAGVTELIQDLGVNWLSQDLTAKLSARAAQGIGVGILTARLGIKAMEFGRPLAFQSNEKPRLSQLHKELLSHLSNTVFDQVKFKQKNKV
>LS483485.1|SQI99198.1|1780886_1782293_-|Predicted-ATPase
MLNHLQKELNELVNRGLDRTLRIAVTGLSRSGKTAFITSLMNQMLHINRVDNGHLPLFDAARQHRILAVQRVPQLDLSIPRFDYEGNLNALSQEPPIWPQSTRGVSETRLAIRYQRSNGLLRHLKEKGTLYLDIFDYPGEWLLDLPLLDLGFEQWSLELQRQLNGTHAELAQTWLNKVKKIKLTDSADEDILAHLAKDYTDYLWQCKKQGLHFIQPGRFVLPGELEGAPALQFFPLLHLNASQWQQLKREAKSESYFAVLTKRYDYYRQHIVKGFYENYFETFDRQVILADCLTPLNHSRQAFNDMQQALQQLFRNFHYGKRHLLNRLFSPKIDKLMFIATKADHITTDQLPNLIGLMRQLVQEGGRYVEFADIVTDYTAIASIRATQQVVVNQNGKQFKALQGIRSSDKQKVTLYPGSVPGRLPSADFWQNQKFEFDQFEPRRLEQGENIPHLRMDAVLQFLLGDKL

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Crispr_ID: LS483485_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483485_2

2001339-2001979

TypeI

Consensus_repeat	Method
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	CRISPRCasFinder
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	CRT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	PILER-CR

9 spacers

cas2,cas1,cas4,cas7,cas8c,cas5

The CRISPR arrays of LS483485_2

>merge|LS483485|2|2001339-2001979|CRISPRCasFinder,CRT,PILER-CR
GACAAAATATATACTCACCCGAAGGCGGCTGCCGCCTTTTTGGTAGGTTTAAAAATAAAAATGAGTGTTTCAACACACAGCCACCCGAAGGTGGCTGCCCAGAGCAGTTACGAAAATTAAGCTGCGGAATCAAAGTTTCAACACACAGCCACCCGAAGGTGGCTGCACAACGAGCAGGCGTGGGCGGAGAACTATTTGACGTTTCAACACACAGCCACCCGAAGGTGGCTGCATTTATGGTGCGATTACATTAATTGTTGTTCCTGTTTCAACACACAGCCACCCGAAGGTGGCTGCTTTCAAGTTGTTGTGCGGTTAATACCGCACTATTGTTTCAACACACAGCCACCCGAAGGTGGCTGCGTATCATTGTTTGTAGATAATTCTTGCTTACAAATGTTTCAACACACAGCCACCCGAAGGTGGCTGCGCAAAACTTTTAGAACAAAACGGCTTGCCGGTAACCGCGGTTTCAACACACAGCCACCCGAAGGTGGCTGCGCAATCTGACCGCACTTTTGCAGAAAAACCTGTTGCGGTTTCAACACACAGCCACCCGAAGGTGGCTGCGCGAACCATTTACGCATCAGCATCGGGTTGCCGGAAGCGGTTTCAACACACAGCCACCCGAAGGTGGCTGC

>LS483485|2|2|2001339-2001979|CRISPRCasFinder
GACAAAATATATACTCACCCGAAGGCGGCTGC	CGCCTTTTTGGTAGGTTTAAAAATAAAAATGAGT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	CCAGAGCAGTTACGAAAATTAAGCTGCGGAATCAAA
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	ACAACGAGCAGGCGTGGGCGGAGAACTATTTGAC
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	ATTTATGGTGCGATTACATTAATTGTTGTTCCT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	TTTCAAGTTGTTGTGCGGTTAATACCGCACTATT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GTATCATTGTTTGTAGATAATTCTTGCTTACAAAT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GCAAAACTTTTAGAACAAAACGGCTTGCCGGTAACCGCG
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GCAATCTGACCGCACTTTTGCAGAAAAACCTGTTGCG
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GCGAACCATTTACGCATCAGCATCGGGTTGCCGGAAGCG
GTTTCAACACACAGCCACCCGAAGGTGGCTGC

>LS483485|2|1|2001339-2001979|CRT
GACAAAATATATACTCACCCGAAGGCGGCTGC	CGCCTTTTTGGTAGGTTTAAAAATAAAAATGAGT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	CCAGAGCAGTTACGAAAATTAAGCTGCGGAATCAAA
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	ACAACGAGCAGGCGTGGGCGGAGAACTATTTGAC
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	ATTTATGGTGCGATTACATTAATTGTTGTTCCT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	TTTCAAGTTGTTGTGCGGTTAATACCGCACTATT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GTATCATTGTTTGTAGATAATTCTTGCTTACAAAT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GCAAAACTTTTAGAACAAAACGGCTTGCCGGTAACCGCG
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GCAATCTGACCGCACTTTTGCAGAAAAACCTGTTGCG
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GCGAACCATTTACGCATCAGCATCGGGTTGCCGGAAGCG
GTTTCAACACACAGCCACCCGAAGGTGGCTGC

>LS483485|2|1|2001405-2001979|PILER-CR
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	CCAGAGCAGTTACGAAAATTAAGCTGCGGAATCAAA
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	ACAACGAGCAGGCGTGGGCGGAGAACTATTTGAC
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	ATTTATGGTGCGATTACATTAATTGTTGTTCCT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	TTTCAAGTTGTTGTGCGGTTAATACCGCACTATT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GTATCATTGTTTGTAGATAATTCTTGCTTACAAAT
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GCAAAACTTTTAGAACAAAACGGCTTGCCGGTAACCGCG
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GCAATCTGACCGCACTTTTGCAGAAAAACCTGTTGCG
GTTTCAACACACAGCCACCCGAAGGTGGCTGC	GCGAACCATTTACGCATCAGCATCGGGTTGCCGGAAGCG
GTTTCAACACACAGCCACCCGAAGGTGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
LS483485.1\|SQI99593.1\|2004195_2004708_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483485.1\|SQI99588.1\|1994914_1998688_+\|Maltodextrin-phosphorylase	unknown	unknown	gnl\|CDD\|340853
LS483485.1\|SQI99582.1\|1986471_1989264_+\|protease3	unknown	unknown	gnl\|CDD\|223685
LS483485.1\|SQI99586.1\|1991592_1993866_+\|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|235367
LS483485.1\|SQI99581.1\|1984045_1986412_+\|Outer-membrane-cobalamin-receptor-protein	unknown	unknown	gnl\|CDD\|369481
LS483485.1\|SQI99594.1\|2004754_2005405_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
LS483485.1\|SQI99589.1\|1998697_1999489_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|197313
LS483485.1\|SQI99604.1\|2012285_2013278_-\|Modification-methylase-PvuII	unknown	unknown	gnl\|CDD\|334588
LS483485.1\|SQI99592.1\|2002540_2003554_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
LS483485.1\|SQI99595.1\|2005420_2006287_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
LS483485.1\|SQI99585.1\|1990395_1991328_-\|Cyn-operon-transcriptional-activator	unknown	unknown	gnl\|CDD\|176132
LS483485.1\|SQI99601.1\|2008886_2010224_-\|NurA-domain	unknown	unknown	unknown
LS483485.1\|SQI99584.1\|1989659_1990391_-\|azaleucine-resistance-protein-AzlC	unknown	unknown	gnl\|CDD\|129446
LS483485.1\|SQI99596.1\|2006298_2008089_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
LS483485.1\|SQI99590.1\|1999499_2001164_+\|EIICBA-Glc	unknown	unknown	gnl\|CDD\|131058
LS483485.1\|SQI99587.1\|1994002_1994773_-\|Trehalose-operon-transcriptional-repressor	unknown	unknown	gnl\|CDD\|274116
LS483485.1\|SQI99603.1\|2010236_2012282_-\|Domain-of-uncharacterised-function-DUF87	unknown	unknown	gnl\|CDD\|223510
LS483485.1\|SQI99591.1\|2002172_2002466_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LS483485.1\|SQI99583.1\|1989330_1989663_-\|Branched-chain-amino-acid-transport-protein-(AzlD)	unknown	unknown	gnl\|CDD\|224601
LS483485.1\|SQI99598.1\|2008085_2008763_-\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534

Protein	Function_ID	Function_description	E-value
LS483485.1\|SQI99595.1\|2005420_2006287_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.50777e-153
LS483485.1\|SQI99588.1\|1994914_1998688_+\|Maltodextrin-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
LS483485.1\|SQI99582.1\|1986471_1989264_+\|protease3	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.30801e-61
LS483485.1\|SQI99586.1\|1991592_1993866_+\|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
LS483485.1\|SQI99581.1\|1984045_1986412_+\|Outer-membrane-cobalamin-receptor-protein	gnl\|CDD\|369481	pfam07715, Plug, TonB-dependent Receptor Plug Domain. The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.	9.2007e-09
LS483485.1\|SQI99594.1\|2004754_2005405_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.08667e-44
LS483485.1\|SQI99589.1\|1998697_1999489_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|197313	cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins. This family includes Streptococcus agalactiae RgfB (for regulator of fibrinogen binding) and related proteins. The function of RgfB is unknown. It is part of a putative two component signal transduction system designated rgfBDAC (the rgf locus was identified in a screen for mutants of Streptococcus agalactiae with altered binding to fibrinogen). RgfA,-C,and -D do not belong to this superfamily: rgfA encodes a putative response regulator, and rgfC, a putative histidine kinase. All four genes are co-transcribed, and may be involved in regulating expression of bacterial cell surface components. This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	4.62489e-124
LS483485.1\|SQI99604.1\|2012285_2013278_-\|Modification-methylase-PvuII	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	3.1185e-32
LS483485.1\|SQI99592.1\|2002540_2003554_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
LS483485.1\|SQI99585.1\|1990395_1991328_-\|Cyn-operon-transcriptional-activator	gnl\|CDD\|176132	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold. MetR, a member of the LysR family, is a positive regulator for the metA, metE, metF, and metH genes. The sulfur-containing amino acid methionine is the universal initiator of protein synthesis in all known organisms and its derivative S-adenosylmethionine (SAM) and autoinducer-2 (AI-2) are involved in various cellular processes. SAM plays a central role as methyl donor in methylation reactions, which are essential for the biosynthesis of phospholipids, proteins, DNA and RNA. The interspecies signaling molecule AI-2 is involved in cell-cell communication process (quorum sensing) and gene regulation in bacteria. Although methionine biosynthetic enzymes and metabolic pathways are well conserved in bacteria, the regulation of methionine biosynthesis involves various regulatory mechanisms. In Escherichia coli and Salmonella enterica serovar Typhimurium, MetJ and MetR regulate the expression of methionine biosynthetic genes. The MetJ repressor negatively regulates the E. coli met genes, except for metH. Several of these genes are also under the positive control of MetR with homocysteine as a co-inducer. In Bacillus subtilis, the met genes are controlled by S-box termination-antitermination system. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.1254e-108
LS483485.1\|SQI99584.1\|1989659_1990391_-\|azaleucine-resistance-protein-AzlC	gnl\|CDD\|129446	TIGR00346, Uncharacterized_membrane_protein_HI_1738, 4-azaleucine resistance probable transporter AzlC. Overexpression of this gene results in resistance to a leucine analog, 4-azaleucine. The protein has 5 potential transmembrane motifs. It has been inferred, but not experimentally demonstrated, to be part of a branched-chain amino acid transport system. Commonly found in association with azlD. [Transport and binding proteins, Amino acids, peptides and amines].	5.2473e-97
LS483485.1\|SQI99596.1\|2006298_2008089_-\|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
LS483485.1\|SQI99590.1\|1999499_2001164_+\|EIICBA-Glc	gnl\|CDD\|131058	TIGR02003, PTS_system_glucose-specific_IIBC_component, PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
LS483485.1\|SQI99587.1\|1994002_1994773_-\|Trehalose-operon-transcriptional-repressor	gnl\|CDD\|274116	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions].	1.09894e-60
LS483485.1\|SQI99603.1\|2010236_2012282_-\|Domain-of-uncharacterised-function-DUF87	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	4.22663e-09
LS483485.1\|SQI99591.1\|2002172_2002466_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.66556e-32
LS483485.1\|SQI99583.1\|1989330_1989663_-\|Branched-chain-amino-acid-transport-protein-(AzlD)	gnl\|CDD\|224601	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism].	3.82792e-38
LS483485.1\|SQI99598.1\|2008085_2008763_-\|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.3418e-116

>LS483485.1|SQI99590.1|1999499_2001164_+|EIICBA-Glc
MKKLLSFEFWQKFGKCLMVVIAVMPAAGLMVSIGNSLPLISDAEWLARVGNIIAQIGWGIIGNLHLLFALAIGGSWANERAGGAFAAGLAFILINLITGHFFGVKIEMLTDPNAHVSTILAGDIPVANYFVNILGQPALNMGVFVGIIAGFVGATTFNSYYNFRKLPEVLTFFNGKRFVPFVVIYRSVLVALILAVFWPVVQTGINHFGEWIANSQDSAPILAPFVYGTLERLLLPFGLHHMLTIPMNYTSLGGTYEFLTGMQQGKQVFGQDPLWLAWISDLINLKDAGNMTQYNELLSTVTPARFKVGQMIGSSGILMGITLAMYVNVDTDKKTIYKGIFLSSALAVFLTGVTEPIEYMFMFVALPLYLVYAAIQGCAFAMADIVNLRVHSFGNIEFLTRTPMAIKAGIGMDLINFIWVSGVFAVAAFLIANFMIKKLNLATAGRNGNYDAKGSDEAPTEEKKVANASAQVVQIINLLGGRNNIAEVDACMTRLRITVHNPELVGDAAAWKQAGAMGFIVKGTGIQAIYGPKADVLKSDIQDLLSSGVEIPKM
>LS483485.1|SQI99589.1|1998697_1999489_+|Uncharacterized-protein-conserved-in-bacteria
MKLLTLNVHAWLEDNQAEKIDIIADTIVEKGYDIVALQEVNQLMSAPAISQALKQDNYGVVLLNKINQRATQKYSLFWSNSHIGYDKYDEGIAFLTRLPVYEVDAFYCSQHQRLDSILSRKILGLTVEYQGQLVDCYSCHINLPNCAGENQLDNIRNIVERSQSQNLKILMGDFNTDAISDPDAYQKIKSLGLLDTFEMAEQKDSGITVEKAIDGWKGHSEEKRLDYIFLNQAKRVLSSQVVFNGKNKPVVSDHFGLEIELTL
>LS483485.1|SQI99588.1|1994914_1998688_+|Maltodextrin-phosphorylase
MLTRSSGVLMHITSLPNAFGIGSFGQSAYDFVDFLVETKQSYWQILPLTTTSYGDSPYQSFSAIAGNTHLIDFALLTQMGLLQETDYASVNFGDDPTKVDYERIFYARRPILEIAVKHFLADKKRQADFKNFEKNNRTWLEDYAEFMAIKEHFGNKALQEWEDKLVVARKPKTLAKYRTMLKEQIQYFKVTQYFFFQQWLALKNYANQRGIKIIGDMPIYVAEDSVEVWTMPELFQLDKECKPLFVAGVPADQFSATGQLWGNPLYDWPEHKKQGYAWWIHRIEESFKIYDVLRIDHFKGFSDYWQVDGKADIAKYGTWQPGPGYDLFKAVKAQLGDLPIIAENLGNIDEKAEKLLTDCGYPGMKILQFGFENVSGESLDSPHYCIPHCIAYTGTHDNDVINGWYADLSTKQQQYINAYTHRATDESVCQAMIRQLFATVSNTVIATMQDILDLPASSRMNLPSTIGGNWEWRMQESDLTKAKKDFLTQITMLYGRANKEQVMIKFSEFVQQTTNKKLEKLSDHAIYVQLLNYVKTLAANKGKNTAKRKIYYISAEFLIGKLLSNNLINLGVYQEIKDELAQAGKSLSHIEDIEPEPSLGNGGLGRLASCFIDSMSTLGLNAEGVGLNYHCGLFKQVFKNNEQHAEPNNWIEKESWLIPTDIHYEVPFKDFTLTSKLDRIDILGYKKDTQNYLNLFDIESINHKLIKKGITFDKTKIKENLTLFLYPDDSDKNGELLRIYQQYFMVSNAAQLLIDEAIERGSNLHDLADYAYVQINDTHPSMVIPELIRLLTEKHRIKFAEAVEIVRNMVGYTNHTILAEALEKWPLAYLEEVVPHLVKIIKKLNKLVHKEYPNPDVQIIDKQKRVHMAHMDIHFSNSVNGVAALHTEILKNSELKAFYEIYPEKFNNKTNGITFRRWLEFSNQELAAYIKQLIGDGYLHDATQLEKLLTFKDDKKVHQKLAEIKFRNKLALKTYLKENKGIELDENSIIDTQIKRFHEYKRQQMNALYVIHKYLEIKAGKLPKRKITVIFGGKAAPAYVIAQDIIHLILCLSELINNDPDVNHYLNVHLVENYNVSVAEKLIPATDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIAELAGAKNIYTFGKDSESIIKLYETAGYVSKDYYKKDKHIKRAVDFILDSTLVKLGNQKRLKRLHDELLNKDWFMTLIDFDAYVTAKEQILADYEAQDSWNEKVIHNIAKAGFFSSDRTIAQYNTDIWHCED
>LS483485.1|SQI99587.1|1994002_1994773_-|Trehalose-operon-transcriptional-repressor
MVFYYRFKEGNKSQKWSGKVSKYKAVYNDIKSKITDGILPPKQELPSESELMQEYGFSKDTIRKALSLLEMDGYIQKQQGRTSIVLEHNLSTPQQLSEIKTVGELNRPLTHQVKTTLTSLYIVQGEEELMRIFNVNDQIDFYRIGRVREIDGEAVEYEVSYFDRRIVPFINREIAEQSIYHYLESELGLKISYSQREIVFRYANEEEKSTMDLGEYNMVVNVTSTTYLADGRPFQYGSISYRPDKITFASTAKRHV
>LS483485.1|SQI99586.1|1991592_1993866_+|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase
MTIFHLAGFPRVGAKRELKFAQERYWRGEIAEADLLDIAKKLREINWQHQANANADFVAVADFTFYDHILDLQVATGAIPTRFGFDSQNLTLDQYFQLARGNKTQFAIEMTKWFDTNYHYLVPEFHKDTQFKANPAHYVQQIREAKALGHNVKPTIVGPLTFLWLGKEKGATFNRFDLLNKLVPVYVDILNALSSEGVEYIQIDEPALTLDLPAEWVAAYKEVYATFAAQVNAKLLLATYFGSVSEHADLLKALPIAGLHIDLVRAPEQLSAFADYDKILSVGVIDGRNIWRANLNQVLDVVEPLKAKLGERLWIAPSCSLLHTPYDLAVEIQLQANKPELYQWLAFTLQKIQELRVIKTALEQGREAVQAELDASQAAADARKNSREIHRTCVAERLANLPKNADQRKSPFAERIKLQNTWLNLPLLPTTNIGSFPQTTEIRHARAAFKKGALSLADYEAAMKKEIEFVVREQEKLDLDVLVHGEAERNDMVEYFGELLDGFAFTKFGWVQSYGSRCVKPPVIYGDVTRPEPMTVRWSQYSQSLTNKVMKGMLTGPVTILQWSFVRNDIPRSTVCKQIAVALSDEVLDLEKAGIKVIQIDEPAIREGLPLKRADWDAYLQWAGEAFRLSSMGCKDDTQIHTHMCYSEFNDILPAIAALDADVITIETSRSDMELLTAFGDFKYPNDIGPGVYDIHSPRVPTAEEIEHLLRKALQVVPKERLWVNPDCGLKTRGWPETIAALKVMVDVTKKLRAELA
>LS483485.1|SQI99585.1|1990395_1991328_-|Cyn-operon-transcriptional-activator
MKPIFLELRHLKTLLALKETGSVSLAAKRVYLTQSALSHQIKLLEDQYGLPLFERKTQPLHFTPAGERLIQLANDILPKVIEAERDLARVKQGEAGELRIAVECHTCFDWLMPAMDLFRQHWPLVELDIVSGFHTDAVGLLLSHRADWAVVQEVEETPGIVYKPLFSYEMVGLCAKDHPLAAKDVWQAEDFIDQTLITYPVPDDMLDLLRKVLHPKGVNPTRRTSELTIAIIQLVASKRGVAALPFWAAKPYLDRGYIVARKITEQGLHSNLYAATRELDSQIAFVDDFYETVKAQSFSTLPELSILEEI
>LS483485.1|SQI99584.1|1989659_1990391_-|azaleucine-resistance-protein-AzlC
MSDVKTNSHPIWAAAKAALPYSAPMLAGFLFLGVAYGIYMKALGFSFWYPVLMALLIYGGSVEFIIAGALSLAFAPLNALLITLMVSGRQLFYSISMLEKYGKSLGKKRPYLIATLVDESFSLNYMAKVPSHIDRGWYMFFVSFYLHMYWMIGAGLGNLFGNIIPFDLKGIEFAMTALFLVIFAENWAQEKSHESSLLGLAIAAISLIVFGREYFLLPTLIGIWTVLTFRRPKLSSRLERIEE
>LS483485.1|SQI99583.1|1989330_1989663_-|Branched-chain-amino-acid-transport-protein-(AzlD)
MTLTEQIITIGIAVLGVQFTRWLPFWVFSANRPIPEYIRYLGKVLPAAMFGMLVVYCYKNVDVFSGFHGVPEFLSGVIVVALHLWKRNMFLSIAAGTMLYMFLVQRVLVA
>LS483485.1|SQI99582.1|1986471_1989264_+|protease3
MSNQKTMKKLTALFVLLCSFRLVIACQAGIDPDALAFDPNIKHGKLTNGLQYYILNNRDPKDRVYIRLVVNAGSMHEDDDQKGIAHLVEHMAFNGSKKYPENTIINALEKLGMKFARDINAFTDFENTVYTLNLDGNSPQKLSLAFDVINEWMNHLTILPKDLDGERGVVQEEWRRRLSPMLRLGDKKSAIEMAGSRYVLRDPIGDMNIIRHISRDRVADFYHKWYRPDNMSLIVVGDIDTHKITQLISQQLDKPSSHTQRPLDKIDFSIPLIHHWRVASIAEQGTNIPALELSFFEEDKQKETITDYKQDLIQQIVTRLVNLRLQKWEENQNNWLDSANFYRSHLGKQTLQSVFSLQLADTNYLKNITALFAFIAEIKQHGFTADELNSEIARLHNLNEKQQNIRPGSLKIANDLIAIAANHQIMLSAKERYNLNRRFLNEIKVTDLNVTFNQMLALNAKLLLITQLLPEKKLPFDATYIEQRWNQAMRSDQNQWENKKHIVKQPHFEFKDGSLVLEKHWDKGNIDEFRLSNGAKLIYHYSNKTPNQVHFRAVTSGGLRSVPNQDYHLLRTAITLVDDTGTGELTQADVSNLFGQSPLVLATVIDDDKQGFTGVAKPQDLSRLLTLFRLKLQSAPVSNNVLQKYHRETQDYFKQIDAETKFMQAISYLRRPNTATVYTQNQNEQLSFTAAQLSQIYQEKILGKTDFTYFIIGDISRSELEKLAKQYLATVEIKTQARAYQPGYIHTPKKAFIMRGLSEPRADVEIYLTAENQWHPEQKYALEILGEIVQEKLRLVLREKVSGIYSVNSWFSQDPHTPQIEGKIAFSCAPNRAEELIKLTHQILDEIIENGIDETLLRKKQAEQQQYIKRQFDSLVSVASMIEDSYWQQGNPQSVYLYQRLEQLADKPHLEALARKVLVKAARFEAILRQ
>LS483485.1|SQI99581.1|1984045_1986412_+|Outer-membrane-cobalamin-receptor-protein
MYKKTKIAFFICTALYAQHVLSEEKSTNKSNMLPEIIVYGDSNKSLSSTQAVTSNEMEKIPTTNNNITDYLRSNPHIRYEDSDQNGFQLGEIKPQNISINGADANQTAYFVDNVNVNNDLTVDNEIFDGAMQVVPGISNTQAYFFDASMLSKVEVHDSNISASLGGFMGGAVVAKTKQYNGKDGVSLKYRTTNSGWAKINADSSAKTLLDKIRPDAGGVAEFQPKYHKQTFSIMAEKGLTENLGMVIGYSKRHARIQQNRLIGYAPDVKLDKQNHKRDSDNLLLNFNLAASEKDRFELGFRYSNYKEQKYYATNIDSNVSDYHQALGSTLAWVHSFNSGILTNTLAYDHFKDKRKSSSANVEIVSVFDENFDPLYDYEKGGYGNSSLTQDNIHFSTEFAVDPFNLGFANHSISIGGIYQATHYKFNRPQDVHSKIIQKYPNLSPIETTNVTHQGNAQTRYQNFVFYTEDLIKWKKLELRPGVRIERDDYLQNNNIAPRFVARYKPWEETGFTLGLNRYYGRSFASLKLTNEILKINRDTSRKYQEFHSLKTPYADELSIGFDQEFNNLAFKLNYIHRKNKNRIVLKRDANKVNFYHNGSDFSVEVYTFQMNNIEPWQLGKSYWTSSLGFDWLKTKRADIGRDLDPNELVYLDGKLLTRREMLNKVNSSTEDWITRFGLDMAIPDYNITWSNKVYIKAPIRSYDVLEGDFNDGISRYRSYHYGRHTQWDSSIRWQPTITGNHSIYLQVDILNVLNKTRKSKTVKPISSNDEYGIYTPGREFWLEVGYKF
>LS483485.1|SQI99591.1|2002172_2002466_-|CRISPR-associated-endoribonuclease-Cas2
MLMLITYDISLEDAEGQARLRRVAKLCLDYGVRVQYSVFECDITPDQWVVLKDKLLKTYNPETDSLRFYHLGSKWRRKVEHHGAKPAVDVFKDVLVI
>LS483485.1|SQI99592.1|2002540_2003554_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-C/DVULG
MRKLQNTLYITTQGSYLHKERETLVVEQERKKVAQLPVHSIGHIFCFGNVLVSPFLLGFCGENNVNLAFFTENGRFLGRLQGRQSGNVLLRRAQYRVSEQNPVPIARNIIAAKIQASKRVLQRQIRNYGENAAIQSAVDALNISLRQLKGTAELDVVRGIEGDAAARYFGVFGQLLSEKSGFAFDGRNRRPPRDGVNALLSFVYSILGKDISGALQGMGLDPQVGFLHADRPGRDSLAQDILEEFRAWWADRLVLSLINRGQIKPQDFVTEASGAVSLKADARKLLFQALQAKKQEKIVHPFLGEEVEIGLLPYIQAMLLARHLRGDLAEYPPFLMR
>LS483485.1|SQI99593.1|2004195_2004708_-|Uncharacterised-protein
MVNKNMIKSKKIFRFEDGEINFEAEKFLFKLEVDNTISVANHIQFHPVRSYKNSLKQVLRPIEGIADLFISCIEEKFNNYDDEMNDALIELIENMLHNIISHVDTCKNIIKQLSGEMKSNGIQNEFLNNIELYRSLFAKQINLVKHNSRFIRVIRGRDEKRKEILLLGTI
>LS483485.1|SQI99594.1|2004754_2005405_-|CRISPR-associated-protein-Cas4
MTALLTETQGKNQDTRLIPLSALQHYAFCPRQCALIHNEQAWAENYLTAQGKALHERVDSGEPETRRGVRFERTVHVSAEKLGISGVLDLVEVETKTGRLKPVEYKRGKPKPDPMDEIQLCAQGLCLEEMTGQIVSEGALWYMQTRHRVPVAFSDDLRAQTLATIAAVRELLNSGQTPPPNYSKRCKACSLVEICQPELLGKRDRSVGYVAGLFGE
>LS483485.1|SQI99595.1|2005420_2006287_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair
MSAIQNRYEFVYFFDVTNGNPNGDPDAGNMPRLDPESSKGLVTDVCLKRKIRNFVEISSENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKDEAKARDITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIVPLEISITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISANLAAKTGFSDDDLAKLWQALTLMFEHDRSAARGEMAARKLIVFKHDSALGSQPAHKLFDAVKVERVNGESGTPASGFGDYKISVVSDGLNGVSVEELL
>LS483485.1|SQI99596.1|2006298_2008089_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MILASLARYYRCLAAETDEMGNPKVPPYGFSEEKIGWILVLDKEGRLKTVVPNLTADKKPQPKLMSVPRPEKRTSGIKPNFLWDKTAYALGVEANKNKAEAKEKPFTLSEKTFDAFKQYHLDLLQNSDDEGLQALCRFLQNWQPAHFAAENLPAEMLDANIAFSLEKPTALIHKREAAQTLWAGSLKSDEALEGLCLISGDTAPIARLHPAIKGVFGGQSSGGSIISFNKEAFASFGKEQGANAPVSEQSAFAYTTALNYLLRQRNQEANNHCLTIGDASTVFWAEADDNATAQAAEGFFAQVFMPPNDEQESVKIFNVLEQIGKGCPLQEIAPELSPNTRFYILGLAPNAARISVRFWLDTTFGQLAENLAQHWQDLALEPCAWKTPPSIWRLLLQTAVLGKSENISPVLAGEMTRAVICGTPYPLSLLSQLITRIRADGDVNGLRVAIMKAVLERRFRKGFIEEGVPMSLNNESPNRAYLLGRLFAVLERIQYQALGELNAGIADRYYGSASAVPFSVFPRLLSGAKHHLSRLRKDKAGMAVNLDKDLGEIIAKLPETFPRHLSIDEQGRFAIGYYHQKQSYFAKKETAETIEN
>LS483485.1|SQI99598.1|2008085_2008763_-|CRISPR-associated-protein-Cas5,-subtype-I-C/DVULG
MANQIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVHWKPAIRWVIDRIYVLKPIRFDSVRRNELGGKISAGKVSGAMKRKSVADLYTLIEDDRQQRAATVLKDVAYVIEAHAVLTAKAGADETVTKHIEMFKRRAKKGQCFQQPCLGVREFPADFALIDEDEPLPPSVLSENEANRDLGWMLHDIDFDHGNTPYFFRAQMKDGVIDVPPFYAEEVKA
>LS483485.1|SQI99601.1|2008886_2010224_-|NurA-domain
MSYSSVGKKPFEKASKSSHHHIINDEVVQSALSNFYIPDVLPEVSISSLTVPHNSCEHSLKHVVAIDGGYTEIPLKIGYPSASLHFFQFGALYFKTEDLKNMKQQKHIAPEDMQKLRNIARIKLPLCTKGVKRKDCSSLTSSVRRSLFEFLKSENMAENSSLLDTLAWFVFHRYKHNRGVEEKHWNLSSHPCNSDTRNVLLEENEMQNYTFSSNDGDIYLSDIFRLHEIIDDDLGASGISGYVTGLVEHLMLLHIIRSLLDKNRQTLNETIFILDRPTGWFGVTAGMHRLMLDLNNWLFENHNLFLIGLEKSGAFVEHASQIQSKMENGSILILNDKYIYSYISPGHEDANRPYASTSYYGHKIIFKTKFGQMYVASLPVKDLKKNPDENDIPNLHEILSVIESLHCDMYENALLPIALTNKLVSLSAHPSTQILTNFAKATITK
>LS483485.1|SQI99603.1|2010236_2012282_-|Domain-of-uncharacterised-function-DUF87
MLSISSSIANINLFERKFERENDPKSNWSWNTGIFVGRPFKISYTSSSILMADAWKEQANGVPQGCFLLAYYDCDPGKDNLQEALLLRVIEPAELPTDKDIVSSMVDYYKDHIRTGNTKQSQLDEYSRYEFGFSGLRCSILGSFYLDAKKNLRFGADVENFYAAHNYSVIKPSNEILGLIANYRENSVPGGNGDIRIGSIRYSSSQRFNNDIGDIPVYIQAKDFAGKRTALFGMTRTGKSNSIKKIIQANEQMSELAQYQLDKQNESPEEILKQFVGDAPKYPIGQIIFDINGEYANANLQDEGTAIFDIYQAKTDRYSIVEKDGFKVMKVNFYNEIEAGFELIKSYPLIADDTSKYMVNFKSVMLEKPYNYDSDRSAKTRYDRRLSVYKCILKAAGFKCSENEKVTFSVNKELLEEMDIPDVTSQSLKAGISLDLATEWWTALWDSYDSSVACNDYKQKKRKEWADDELKALLVILTRKSSSGGSIDRTGYLNLRPIVAQHTDKSQTPFEDDILQALRQGKIVIADLSSGDEELQRMYSERITRRIFRDSMNRFTNAQPNNFIQFYFEEAHNLFPKKDDKNLSQIYNRLAKEGAKLNLGLVYATQEVSSISSNILKATQNWFISHLNNEDEIKELRKYYDFSDFSDSLIRFSQNTDKGFVRVKTYSNSFVVPVQIDKFGK
>LS483485.1|SQI99604.1|2012285_2013278_-|Modification-methylase-PvuII
MKKNKFPRNISKVFERKSGALYLGDSLDLLQSKSFSNLNGKVNLIITSPPYPLNQKKSYGNKTGEEYLNWIKELTPLLAEKLADDGSLVVELGNSWEPGRPVQSLLALKALMSIAESAETNLRLIQEFVCYNPSRLPSPAQWVTVNPLRTVDSYTHVWWFSKTDYPKADNRKVLRPYSEAMKSLLKRGSYNAGKRPSEHSIGEKSFLNDRGGAISHNLFEIESIDENRKPRLPNAFSFSNSASNDFFHRECKRQNITVHPARMPIGLVKFFIQYLTDEGDLILDPFAGSNTTGFAAALLNRNWISIELQESYIEQAKIRFEDPILSYKEV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483485_2	2.3\|2001505\|34\|LS483485\|CRISPRCasFinder,CRT,PILER-CR	2001505-2001538	34	LS483485.1	2005263-2005296	0	1.0

1. spacer 2.3|2001505|34|LS483485|CRISPRCasFinder,CRT,PILER-CR matches to position: 2005263-2005296, mismatch: 0, identity: 1.0

acaacgagcaggcgtgggcggagaactatttgac	CRISPR spacer
acaacgagcaggcgtgggcggagaactatttgac	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483485_2	2.4\|2001571\|33\|LS483485\|CRISPRCasFinder,CRT,PILER-CR	2001571-2001603	33	NZ_KX753679	Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence	4504-4536	0	1.0
LS483485_2	2.4\|2001571\|33\|LS483485\|CRISPRCasFinder,CRT,PILER-CR	2001571-2001603	33	GQ866235	Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence	610-642	0	1.0
LS483485_2	2.5\|2001636\|34\|LS483485\|CRISPRCasFinder,CRT,PILER-CR	2001636-2001669	34	NZ_KX753679	Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence	3746-3779	0	1.0
LS483485_2	2.5\|2001636\|34\|LS483485\|CRISPRCasFinder,CRT,PILER-CR	2001636-2001669	34	NC_021724	Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence	2286-2319	0	1.0
LS483485_2	2.5\|2001636\|34\|LS483485\|CRISPRCasFinder,CRT,PILER-CR	2001636-2001669	34	NC_002579	Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence	25226-25259	0	1.0
LS483485_2	2.5\|2001636\|34\|LS483485\|CRISPRCasFinder,CRT,PILER-CR	2001636-2001669	34	GQ866235	Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence	1364-1397	0	1.0
LS483485_2	2.4\|2001571\|33\|LS483485\|CRISPRCasFinder,CRT,PILER-CR	2001571-2001603	33	NC_021724	Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence	1531-1563	1	0.97
LS483485_2	2.4\|2001571\|33\|LS483485\|CRISPRCasFinder,CRT,PILER-CR	2001571-2001603	33	NC_002579	Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence	24469-24501	2	0.939
LS483485_2	2.1\|2001371\|34\|LS483485\|CRISPRCasFinder,CRT	2001371-2001404	34	MT475811	Uncultured crAssphage clone CRB_ENV3 polymerase gene, partial cds	283-316	7	0.794
LS483485_2	2.3\|2001505\|34\|LS483485\|CRISPRCasFinder,CRT,PILER-CR	2001505-2001538	34	MH825706	Streptomyces phage Microdon, complete genome	6503-6536	10	0.706
LS483485_1	1.1\|1769952\|46\|LS483485\|CRISPRCasFinder	1769952-1769997	46	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	245215-245260	14	0.696

1. spacer 2.4|2001571|33|LS483485|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 0, identity: 1.0

atttatggtgcgattacattaattgttgttcct	CRISPR spacer
atttatggtgcgattacattaattgttgttcct	Protospacer
*********************************

2. spacer 2.4|2001571|33|LS483485|CRISPRCasFinder,CRT,PILER-CR matches to GQ866235 (Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence) position: , mismatch: 0, identity: 1.0

atttatggtgcgattacattaattgttgttcct	CRISPR spacer
atttatggtgcgattacattaattgttgttcct	Protospacer
*********************************

3. spacer 2.5|2001636|34|LS483485|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 0, identity: 1.0

tttcaagttgttgtgcggttaataccgcactatt	CRISPR spacer
tttcaagttgttgtgcggttaataccgcactatt	Protospacer
**********************************

4. spacer 2.5|2001636|34|LS483485|CRISPRCasFinder,CRT,PILER-CR matches to NC_021724 (Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence) position: , mismatch: 0, identity: 1.0

tttcaagttgttgtgcggttaataccgcactatt	CRISPR spacer
tttcaagttgttgtgcggttaataccgcactatt	Protospacer
**********************************

5. spacer 2.5|2001636|34|LS483485|CRISPRCasFinder,CRT,PILER-CR matches to NC_002579 (Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence) position: , mismatch: 0, identity: 1.0

tttcaagttgttgtgcggttaataccgcactatt	CRISPR spacer
tttcaagttgttgtgcggttaataccgcactatt	Protospacer
**********************************

6. spacer 2.5|2001636|34|LS483485|CRISPRCasFinder,CRT,PILER-CR matches to GQ866235 (Aggregatibacter actinomycetemcomitans strain D11S-1 plasmid S57, complete sequence) position: , mismatch: 0, identity: 1.0

tttcaagttgttgtgcggttaataccgcactatt	CRISPR spacer
tttcaagttgttgtgcggttaataccgcactatt	Protospacer
**********************************

7. spacer 2.4|2001571|33|LS483485|CRISPRCasFinder,CRT,PILER-CR matches to NC_021724 (Aggregatibacter actinomycetemcomitans plasmid pS23A, complete sequence) position: , mismatch: 1, identity: 0.97

atttatggtgcgattacattaattgttgttcct	CRISPR spacer
atttatggtgcaattacattaattgttgttcct	Protospacer
***********.*********************

8. spacer 2.4|2001571|33|LS483485|CRISPRCasFinder,CRT,PILER-CR matches to NC_002579 (Aggregatibacter actinomycetemcomitans plasmid pVT745, complete sequence) position: , mismatch: 2, identity: 0.939

atttatggtgcgattacattaattgttgttcct	CRISPR spacer
atttatggtgcaattacattaattgttgttccc	Protospacer
***********.********************.

9. spacer 2.1|2001371|34|LS483485|CRISPRCasFinder,CRT matches to MT475811 (Uncultured crAssphage clone CRB_ENV3 polymerase gene, partial cds) position: , mismatch: 7, identity: 0.794

cgcctttttggtaggtttaaaaataaaaatgagt--	CRISPR spacer
aatcttattggtgggtttaaaaataaaa--gagttg	Protospacer
 ..*** *****.***************  ****

10. spacer 2.3|2001505|34|LS483485|CRISPRCasFinder,CRT,PILER-CR matches to MH825706 (Streptomyces phage Microdon, complete genome) position: , mismatch: 10, identity: 0.706

acaacgagcaggcgtgggcggagaactatttgac------	CRISPR spacer
ccaacgcgcaggcgtgggcgaagaa------ggcgcagca	Protospacer
 ***** *************.****      *.*

11. spacer 1.1|1769952|46|LS483485|CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 14, identity: 0.696

ttctcaacatcaagttatgcgggaatagctcagttggtagagcaca	CRISPR spacer
ctaaggggcacaatgtatgcgggaatagctcagttggtagagcgtc	Protospacer
.*   ..   ***  ****************************..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

96115 : 106155

Serratia_phage(16.67%)

integrase

attL 96041:96057|attR 108738:108754

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
96041:96057	attL	NA	NA	NA	NA
SQI92235.1\|96115_98131_+	DNA ligase	A0A289ZTZ3	Serratia_phage	1.3e-142	49.4
SQI92236.1\|98316_98895_-	Thymidine kinase	A0A076YPF1	Citrobacter_phage	5.2e-52	51.6
SQI92237.1\|98897_99131_-	Uncharacterised protein	NA	NA	NA	NA
SQI92238.1\|99202_100231_-	t(6)A37 threonylcarbamoyladenosine biosynthesis protein	A0A0R6PI74	Moraxella_phage	1.2e-110	58.3
SQI92239.1\|100455_100671_+	30S ribosomal protein S21	NA	NA	NA	NA
SQI92254.1\|100793_102572_+	DNA primase	A0A1S5RF71	Helicobacter_phage	5.6e-44	31.6
SQI92257.1\|102643_104515_+	Sigma-70	A0A2I7SAT0	Vibrio_phage	1.0e-35	33.5
SQI92263.1\|104913_106155_+\|integrase	Prophage CP4-57 integrase	A0A1B5FPC6	Escherichia_phage	8.3e-71	38.0
108738:108754	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1466805 : 1492402

uncultured_Caudovirales_phage(53.85%)

portal,capsid,head,tRNA,integrase,protease,tail,terminase

attL 1472211:1472232|attR 1504542:1504563

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI98438.1\|1466805_1468746_+\|protease	ATP-dependent zinc metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	1.7e-115	41.8
SQI98439.1\|1468834_1469365_+	Protein of uncharacterised function, DUF462	NA	NA	NA	NA
SQI98440.1\|1469441_1470281_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	A0A2I7SAX1	Vibrio_phage	9.0e-37	37.0
SQI98441.1\|1470289_1471072_-	Zn-ribbon-containing, possibly nucleic-acid-binding protein	NA	NA	NA	NA
SQI98442.1\|1471179_1471497_+	Domain of uncharacterised function, DUF446	NA	NA	NA	NA
SQI98443.1\|1471490_1472201_+\|tRNA	tRNA pseudouridine synthase C	NA	NA	NA	NA
1472211:1472232	attL	NA	NA	NA	NA
SQI98444.1\|1472254_1472416_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQI98445.1\|1472625_1472835_+	Cold shock-like protein CspD	A0A1J0GVA5	Vibrio_phage	2.1e-11	53.1
SQI98446.1\|1472900_1473347_-	Macrodomain Ter protein	NA	NA	NA	NA
SQI98447.1\|1473482_1475258_+\|protease	ATP-dependent protease Lon	NA	NA	NA	NA
SQI98448.1\|1475399_1475930_+	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	NA	NA	NA	NA
SQI98449.1\|1476384_1477581_+\|integrase	Prophage CP4-57 integrase	A0A1V0E8G8	Vibrio_phage	2.2e-76	38.0
SQI98450.1\|1477745_1479536_-	phage/plasmid primase, P4 family, C-terminal domain	Q7M2A8	Enterobacteria_phage	4.3e-76	38.1
SQI98451.1\|1479519_1479963_-	Uncharacterised protein	NA	NA	NA	NA
SQI98452.1\|1479962_1480277_-	Uncharacterised protein	NA	NA	NA	NA
SQI98453.1\|1480276_1480486_-	Uncharacterised protein	NA	NA	NA	NA
SQI98454.1\|1480482_1480686_-	Uncharacterised protein	NA	NA	NA	NA
SQI98455.1\|1480678_1480909_-	Uncharacterised protein	NA	NA	NA	NA
SQI98456.1\|1480901_1481117_-	Uncharacterised protein	NA	NA	NA	NA
SQI98457.1\|1481121_1481544_-	Uncharacterised protein	NA	NA	NA	NA
SQI98458.1\|1481742_1482054_-	Uncharacterised protein	NA	NA	NA	NA
SQI98459.1\|1482065_1482269_-	Predicted transcriptional regulator	NA	NA	NA	NA
SQI98460.1\|1482455_1483427_-	Uncharacterised protein	NA	NA	NA	NA
SQI98461.1\|1483521_1483884_-	Uncharacterised protein	NA	NA	NA	NA
SQI98462.1\|1483977_1484262_-	Uncharacterised protein	NA	NA	NA	NA
SQI98463.1\|1484258_1485926_-\|terminase	Phage terminase-like protein, large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	3.4e-245	71.6
SQI98464.1\|1485932_1486301_-\|terminase	Phage terminase, small subunit	A0A2H4JHS3	uncultured_Caudovirales_phage	1.7e-35	64.3
SQI98465.1\|1486403_1486766_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.1e-28	53.6
SQI98466.1\|1486780_1487095_-	uncharacterized phage protein (possible DNA packaging)	A0A2H4JD08	uncultured_Caudovirales_phage	2.7e-18	49.5
SQI98467.1\|1487081_1487426_-\|head,tail	Bacteriophage head-tail adaptor	NA	NA	NA	NA
SQI98468.1\|1487409_1488642_-\|portal	phage portal protein, HK97 family	A0A2H4JFJ9	uncultured_Caudovirales_phage	4.7e-143	62.3
SQI98469.1\|1488643_1489210_-\|head,protease	phage prohead protease, HK97 family	A0A2H4JB68	uncultured_Caudovirales_phage	9.7e-51	64.6
SQI98470.1\|1489263_1490451_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	A0A2H4JED2	uncultured_Caudovirales_phage	6.8e-131	63.0
SQI98471.1\|1491091_1492402_+	Probable adenine permease PurP	A0A0R6PHV4	Moraxella_phage	2.9e-66	36.3
1504542:1504563	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483485

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection