CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483483	Klebsiella oxytoca strain NCTC11355 genome assembly, chromosome: 1	4 crisprs	DEDDh,WYL,DinG,cas3,csa3	0	1	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483483_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483483_1

2020138-2020208

Orphan

Consensus_repeat	Method
CTGCGCATCTGTCCGGGCTACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483483_1

>merge|LS483483|1|2020138-2020208|CRISPRCasFinder
CTGCGCATCTGTCCGGGCTACCGGCCCGGAGTCGGCGGTGAACCTGTACTGCGCATCTGTCCGGGCTACCG

>LS483483|1|1|2020138-2020208|CRISPRCasFinder
CTGCGCATCTGTCCGGGCTACCG	GCCCGGAGTCGGCGGTGAACCTGTA
CTGCGCATCTGTCCGGGCTACCG

Protein	Signature genes	Signature genes Name	Protein_function
LS483483.1\|SQI88351.1\|2013331_2014144_-\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|377562
LS483483.1\|SQI88355.1\|2016386_2017643_-\|YgbK-domain-protein	unknown	unknown	gnl\|CDD\|225930
LS483483.1\|SQI88365.1\|2028273_2029719_-\|methylaspartate-mutase-E-subunit	unknown	unknown	gnl\|CDD\|130567
LS483483.1\|SQI88352.1\|2014172_2014949_-\|hydroxypyruvate-isomerase	unknown	unknown	gnl\|CDD\|226149
LS483483.1\|SQI88361.1\|2023671_2024979_-\|symport-protein	unknown	unknown	gnl\|CDD\|224220
LS483483.1\|SQI88357.1\|2019096_2019999_+\|glycine-cleavage-system-transcriptional-activator	unknown	unknown	gnl\|CDD\|182990
LS483483.1\|SQI88363.1\|2025658_2027029_-\|3-methylaspartate-ammonia-lyase-glutamate-mutase	unknown	unknown	gnl\|CDD\|377804
LS483483.1\|SQI88356.1\|2018021_2018714_+\|propanediol-utilization-transcriptional-activator	unknown	unknown	gnl\|CDD\|225117
LS483483.1\|SQI88366.1\|2029735_2030893_-\|glutamate-mutase-L	unknown	unknown	gnl\|CDD\|130386
LS483483.1\|SQI88367.1\|2031124_2031574_-\|methylaspartate-mutase-S-chain	unknown	unknown	gnl\|CDD\|179400
LS483483.1\|SQI88353.1\|2014929_2015736_-\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
LS483483.1\|SQI88359.1\|2020931_2022584_-\|fumarate-hydratase-class-I	unknown	unknown	gnl\|CDD\|185290
LS483483.1\|SQI88360.1\|2022595_2023597_-\|glutaminase	unknown	unknown	gnl\|CDD\|237073
LS483483.1\|SQI88349.1\|2011541_2011961_-\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|377163
LS483483.1\|SQI88358.1\|2020319_2020922_-\|Cob(I)alamin-adenosyltransferase	unknown	unknown	gnl\|CDD\|235662
LS483483.1\|SQI88348.1\|2010891_2011545_-\|Asp/Glu/Hydantoin-racemase	unknown	unknown	unknown
LS483483.1\|SQI88362.1\|2025539_2025662_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379559
LS483483.1\|SQI88350.1\|2011966_2013310_-\|Sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|223462
LS483483.1\|SQI88354.1\|2015745_2016390_-\|ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|181241
LS483483.1\|SQI88364.1\|2027032_2028274_-\|methylaspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|226321

Protein	Function_ID	Function_description	E-value
LS483483.1\|SQI88351.1\|2013331_2014144_-\|Uncharacterized-conserved-protein	gnl\|CDD\|377562	pfam05853, BKACE, beta-keto acid cleavage enzyme. BKACE, beta-keto acid cleavage enzyme plays, a role in lysine degradation. In certain instances it catalyzes the conversion of 3-keto-5-aminohexanoate and acetyl-CoA into acetoacetate and 3-aminobutyryl-CoA. The family is found to have at least 14 slightly different potential new enzymatic activities, all of which can therefore be designated as beta-keto acid cleavage enzymes.	1.22763e-74
LS483483.1\|SQI88355.1\|2016386_2017643_-\|YgbK-domain-protein	gnl\|CDD\|225930	COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown].	4.32843e-148
LS483483.1\|SQI88365.1\|2028273_2029719_-\|methylaspartate-mutase-E-subunit	gnl\|CDD\|130567	TIGR01503, Glutamate_mutase_epsilon_subunit, methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. [Energy metabolism, Amino acids and amines, Energy metabolism, Fermentation].	0
LS483483.1\|SQI88352.1\|2014172_2014949_-\|hydroxypyruvate-isomerase	gnl\|CDD\|226149	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism].	3.34677e-111
LS483483.1\|SQI88361.1\|2023671_2024979_-\|symport-protein	gnl\|CDD\|224220	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion].	2.72228e-117
LS483483.1\|SQI88357.1\|2019096_2019999_+\|glycine-cleavage-system-transcriptional-activator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	5.90252e-61
LS483483.1\|SQI88363.1\|2025658_2027029_-\|3-methylaspartate-ammonia-lyase-glutamate-mutase	gnl\|CDD\|377804	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA. This family consists of several bacterial and plant proteins of around 400 residues in length. One member of this family has been characterized in Pseudomonas citronellolis as AtuA, a member of a gene cluster that is essential for the acyclic terpene utilisation (Atu) pathway.	5.34771e-07
LS483483.1\|SQI88356.1\|2018021_2018714_+\|propanediol-utilization-transcriptional-activator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.84818e-23
LS483483.1\|SQI88366.1\|2029735_2030893_-\|glutamate-mutase-L	gnl\|CDD\|130386	TIGR01319, glmL_fam, conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).	0
LS483483.1\|SQI88367.1\|2031124_2031574_-\|methylaspartate-mutase-S-chain	gnl\|CDD\|179400	PRK02261, PRK02261, methylaspartate mutase subunit S; Provisional.	3.44144e-83
LS483483.1\|SQI88353.1\|2014929_2015736_-\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	5.29335e-88
LS483483.1\|SQI88359.1\|2020931_2022584_-\|fumarate-hydratase-class-I	gnl\|CDD\|185290	PRK15392, PRK15392, class I fumarate hydratase.	0
LS483483.1\|SQI88360.1\|2022595_2023597_-\|glutaminase	gnl\|CDD\|237073	PRK12356, PRK12356, glutaminase; Reviewed.	1.82925e-145
LS483483.1\|SQI88349.1\|2011541_2011961_-\|Uncharacterized-conserved-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	3.70248e-33
LS483483.1\|SQI88358.1\|2020319_2020922_-\|Cob(I)alamin-adenosyltransferase	gnl\|CDD\|235662	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase.	1.56772e-116
LS483483.1\|SQI88362.1\|2025539_2025662_-\|Uncharacterised-protein	gnl\|CDD\|379559	pfam14330, DUF4387, Domain of unknown function (DUF4387). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are approximately 110 amino acids in length. There is a conserved RSKN sequence motif.	9.82572e-13
LS483483.1\|SQI88350.1\|2011966_2013310_-\|Sodium-dependent-transporter	gnl\|CDD\|223462	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only].	1.66149e-35
LS483483.1\|SQI88354.1\|2015745_2016390_-\|ribulose-5-phosphate-4-epimerase	gnl\|CDD\|181241	PRK08130, PRK08130, putative aldolase; Validated.	2.09048e-120
LS483483.1\|SQI88364.1\|2027032_2028274_-\|methylaspartate-ammonia-lyase	gnl\|CDD\|226321	COG3799, Mal, Methylaspartate ammonia-lyase [Amino acid transport and metabolism].	0

>LS483483.1|SQI88357.1|2019096_2019999_+|glycine-cleavage-system-transcriptional-activator
MRGKIPKTELLVTFEVVARHESYTRAAEELALTQSAVFRQVTALEDFLHTSLFNHAKKRIFLNEAGKHYLSIVKETLNKLERDTNSIMTWQPTVQVLELAVNPTFSTHWLIPNLREFNKLNPDIIVNIHSLASMSDFLSREYDAAIMREDFCSPWSEVEYLFEEEILPVCGCGLLSEPGQKLAVEELLGEFPLLHQSTRIHGWQEWFALSNITSPQINIGPRFDLLSMLIAAVRSNLGVALLPRFAIQHDLDSGEMVIPCDVPIRTGNRFIMTWQEDKTESRHLQVFRDWLLQKSVVSAA
>LS483483.1|SQI88356.1|2018021_2018714_+|propanediol-utilization-transcriptional-activator
MAENKRDNGIVFFSSLTDVFSRATGLTATVIKVTDGRLPDCYAGAEFFSLPLVQSNEICGYIIFDHRAATDNNHRSAAIRLLHFIVSHYSAMEEAEEEGARLARQKSTFYYAQKSPHEIKLAAALRYIDEHLYDELSLESVAAHVCLSANYFSRFFKKRQGVNFKVWVNQKKMQRAGELLGDPANSIDSVARKLQFAQTSYFCRVFRAAHRTTPQSFRERNLWRSSPRIG
>LS483483.1|SQI88355.1|2016386_2017643_-|YgbK-domain-protein
MAVTTGVIADDFTGATDIASFMAEQGWRVALLPGMPDITQSWNEEVDAIVISLKSRALPAEQAVAQSLACARWLRQNAGVRQLYFKYCSTFDSTPAGNIGPVSDALMNDIQAPLIVHCPALPQNGRTVVHGHLFVNGVLLNESGMEKHPLNPMTDASVPRLLAAQTASPVGHIALNTIRSGVEAVTYALAHYQTEGTRHVIVDTLDGTDLHTLAQALQEYPLLAGGSGLGGALAANAGGHPVASPHRFPSPARAVVFSGSCSTMSNRQVNRYKAQAASCLLDVARCLSDTESYSDELSTWAMAHISDPLAPLLYATQPPEALQRIQQEYGEQAASRAIERTFARLSAKLLAAGVNTFIVAGGETSGTVVEALQVKRLAVGRAIAPGVPWVFSSGLALALKSGNFGDEDFFFTAQEYPS
>LS483483.1|SQI88354.1|2015745_2016390_-|ribulose-5-phosphate-4-epimerase
MNPVSEHQLREQLVHYGRSLFMRGYSSGGSGNLSVKLPDGGYLVTPTNSCLGELQAATLSRLDADGVHLSGDKPSKEVPMHLAWYRHRPSCGAVVHLHSPWLTALSCLPCATPENCLPPLTPYYVMRVGRLPLLPYFKPGHEGIASALSDIAADHTAALLANHGPVVSGRSLREAVFNAEELEDSARIWLTLKPLGYVPLSEAAVAELEQSRQA
>LS483483.1|SQI88353.1|2014929_2015736_-|DeoR-family-transcriptional-regulator
MIPEQRRDFIYRYVHEKNAASFNELAELMSVSHMTVRRDIQLLEEEGKVIAINGGVKLNNLLKSELPWREKAELHHEVKRKMGQLAAMLIEPGQTLYLDAGTSLFEVAKAVAASRCFNLTVVTNDFSISHYLMDMPHITLYHTGGLVDQRNRSSIGKSAASFLRTINIDVAFLSSSSWDTERGMSTPSEGKASVKEAVLTVSRRRVLVCDSSKFGKYGMFHICGLEQLTDIVSDNRLPEDAQHTIASQGVKLHLVDSREDAHHAEARG
>LS483483.1|SQI88352.1|2014172_2014949_-|hydroxypyruvate-isomerase
MLKLAANLDWLFTDLPIAARFQAAKAAGFHGIEGLFLWQHPLEQLQAAQRQTSLPLVLMNAPAGNWSQGERGLAALPGREEEFHRSLERARHYATALGCRRVHVMAGLRCDALTHQAQLELLRNRLRIACDVLAVAGIDVLIEPLNSQDMPGYFIDSFPLAAAIIDQVARNNIGLQFDIYHCQKIHGNVAKNIERYFTLIKHIQIASVPYRHEPGTGELNEAWLFDFIKKMNYKGWIGCEYQPSTSGPESLRWITPYL
>LS483483.1|SQI88351.1|2013331_2014144_-|Uncharacterized-conserved-protein
MSDTVIISLAPVAADCPRVIPEELAQEILASVEYGAAIVHLHVRDKQGCLTPDTVDFQATIDPVMRHSNLIIQASTGGVSSLSIAERCAPLACSGVEMASLNVGSVNLGDAVYFNPGPDVEYCARQIIAHNIIPEFEVFEIGMINNILALQENIKFKTPMLFNIVLGHRGSTPATIDTLIAMRSMLPREALWGITHFGRKNFDIIAAAVAMGASEVRIGFEDSYYLSAEEKAQNNYQQVAKLATLIRSMDKKVATPDIARQMLSIPPRQQ
>LS483483.1|SQI88350.1|2011966_2013310_-|Sodium-dependent-transporter
MTMTTVIHKTGLGVSIAGAALAAVGALMHSPALWQPGLVMFTAGFAAGAGYWPGLRSYQFTLWIIAGFVAAMTWSTDLIVWGGFNITHKWIVFLVIQATMFSMGTKLTIQDFIDVAKMPWAVFIGTFCHFVIMPLLGLTITLVFNFPPEVAVGILLIGACPSGLSSTVMVYIANANLALAVSIAAVSTLAATVMTPLWVNLLAGSMIDIQLTAMVMDVVKIVLIPIGAAILHDYLKTYASIRGRRIVQGLAGLGALWLLYMSAGGWNTLFASAGAEAQMYAVVVNFVAGGLVWALFYNWLYGRVEGIKKIMPTISMIGIIFFTTTAAAAGRDNLVQVGFLLCFAMLMHNLGGFLIGYLMSRWIFRMDVQSARTVAFEVGLQNGGMASGLAAAMGKLATVGLASAVMTPLGNVSGSLLANYWRKKDARQAQAAANNPAQTVSEHLSKG
>LS483483.1|SQI88349.1|2011541_2011961_-|Uncharacterized-conserved-protein
MTTLTLEQALRAVAFALDLADSCYAKRPLSVAVCDASGELLSFARMDNAKLLTIELTQRKAHTSSRLGCTTQAFLQRLQKEQLDISYFADPHFTALPGGVPLLYDGKCLGAVAVGGLSAQEDHDAALAVAENLLKEIAQ
>LS483483.1|SQI88348.1|2010891_2011545_-|Asp/Glu/Hydantoin-racemase
MKKIAMLHTSSATLAMMQQLIADIMPEVEVMHLVEESMIKQVMKAGGITPNIAARIADYVHIAEKADCDIFITACSSIGTAVEQCQFLTPLQLARIDNAMVEEAIEKGERIAVLATVATTLKPTLDYVQRKVQESGKPRAITPILMEEAFYALLAGDMDTHDRIVSEGLQSAFSQADVVMLAQASMARVLQQLPAPPVPVMTSPESGIRWLKALAES
>LS483483.1|SQI88358.1|2020319_2020922_-|Cob(I)alamin-adenosyltransferase
MHARGNPDRHRQRQQKLKTQVDTRVAAATEQKGILIVFTGNGKGKSTAAFGTATRAVGHGKRVGVAQFIKGQWDNGEYNTLHPLGVEFHIMGTGFTWETQNRETDMEAASAVWRESKRMLADPSYDLVVLDELTYMLAYRYLDPQEVIAAIVNRPPQQNVIVTGRGCHARLLELADTVSELRPVKHAFDGGIQAQAGIDW
>LS483483.1|SQI88359.1|2020931_2022584_-|fumarate-hydratase-class-I
MSKPFVWQELFVQSKDNTEYELLSNQHVKVTELDGEEVIKVAPEALTLLAQQAFYEASFFLRAGHLKQIASILHDPQASSNDKYVALQLLRNAEVSAKGVLPNCQDTGTATIVASKGQNVWTGGNDAEALSQGVYNTFQENNLRYSQNAPLDMYTEVNTETNLPAQIDISAVPGSEYRFLFVNKGGGSANKAALFQETKSILQPEKLTAFLIEKMKALGTAACPPYHIAFVVGGLSADQALKVAKLASTKYYDNLPTSGNALGQAFRDTALEATLLNASREFGIGAQFGGKYFAHDIRVIRLPRHGGSCPIAMALSCSADRNIKAKINKHGIWLEKLEHNPGKFIPDSQRIENGAQTVQLDLNRPLRDILRDMSALPVGTRLSLSGPIVVARDIAHAKIKERLDNGEPMPAYMRNHIVYYAGPAKTPDNLACGSLGPTTGGRMDGYVDAFQAAGGSLIMLSKGNRSPQVTEACLKHGGFNLGSIGGAAALLAQQYVKSLRCLEYPELGMEAVWMMEVENLPAFVLVDDKGNNFFSQFEQQHRCATCPAGH
>LS483483.1|SQI88360.1|2022595_2023597_-|glutaminase
MNVKFLGTCLFTASLLFSGAAAAQGAPDYASIIEQAHQKYKNNHEGKVADYIPALATYSPDNFAITLATVEGKIYQTGDVKKAFPMESLSKVFTLALAMEQRGPQEVLDKLGANATGLPFNSGLAVELTQGAPENPLVNAGAMSTVSLIAAQDKTDRWNKILNNLSAWADSTLSVNEPVFQSEMATNQHNQALAMLMHSYRSFYGDPQEAVEIYTRQCSVDITVEQLAKMGAVLANGGKSPFNGRQLLNASYVPQILAEMAIAGLYDGSGRWLYSVGIPAKSGVAGGMIAVVPGRYAIAVYSPPLDAAGNSVRAQQTIEYVAKATQANLFFAK
>LS483483.1|SQI88361.1|2023671_2024979_-|symport-protein
MKKISLTKMIILGLILGMIAGVAINNMASADTAKSYAQDISIFTTIFLRMVKMIIAPLVISTLVVGIAKMGDAKTLGRIFSKTFFLFICASLLSIALGLVIVNLFQPGAGINFVAHDAGAVAAVQSEPFTLKVFISHAVPTSIVDAMARNEILQIVVFSIFLGCSLAAIGEKAEPIVKVLDSLVHVMLKLTGYVMLFAPLTVFAAISGLIAERGLGVMVSAGIFMGEFYLTLGMLWAMLIGLSAVIVGPCIGRLTKAILEPALLAFTTSSSEAAFPGTLDKLEKFGVSSKIASFVLPIGYSFNLVGSMAYCSFATVFIAQACNVHLGMGEQITMLLILMLTSKGMAGVPRASMVVIAATLNQFNIPEAGLILLMGVDPFLDMGRSATNVMSNAMGAAIVGRWEGEHYGEGCRGTAPVKKPEQERPASETSEVAMS
>LS483483.1|SQI88362.1|2025539_2025662_-|Uncharacterised-protein
MKQSLCSLAQVIRSKNAGPYELVLDILFKNPGGLSAGKTI
>LS483483.1|SQI88363.1|2025658_2027029_-|3-methylaspartate-ammonia-lyase-glutamate-mutase
MARTFKILSPTAILGYGFPEESFLKAMAESPDLIAVDAGSSDPGPHYLGAGKPFTDRAGVKRDLRYMIVAGVKNSIPVVIGTAGGSGAAPHLEWCRQIIHEIAQEEKLSFSMALIPSDVEKSIVHQALDNGKITALDFVPELTHEAIEESTYIVAQMGIEPFQRALAAGAQVVLGGRAYDPACFAALPIMQGFDEGLALHCGKILECAAIAATPGSGSDCAMGIIDDNGFTLKTFNPQRKFTETSAAAHTLYEKSDPYFLPGPGGVLNLKGCSFKAVNEGEVYVSGSRHEETPYALKLEGARRVGFRCLTIAGTRDPIMIAGIDTILAEVQASVARNLSLSDDSIRMTFHLYGKNGVMGNHEPMKSAGHELGILLDVVAPTQDTANSVCSLVRSTLLHYGYEKRIATAGNLAFPFSPSDIQSGPVYEFSIYHLIEACDALRFDFHIEQVTPEGVQA
>LS483483.1|SQI88364.1|2027032_2028274_-|methylaspartate-ammonia-lyase
MKIKQALFTAGYSSFYFDDQQAIKNGAGHDGFIYTGAPVTPGFTSVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAENFIPFLNDHIKPLLEGRDVDTFLPNARFFDKLRIDGQLLHTAVRYGLSQALLDATALASGRLKAEVVCDEWQLPCIPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGLKGEKLREYIRWLSDRILSLRTSPRYRPTLHIDVYGTIGLIFDMDPLRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGVHNIVDAVLYCNKHAMEAYQGGTCNETEISARTCVHVALAARPVRMLIKPGMGFDEGLNIVFNEMNRTIALLQTKD
>LS483483.1|SQI88365.1|2028273_2029719_-|methylaspartate-mutase-E-subunit
MELRNKKLTHDEFMTERHQVLQTWHTGKDVEHFEDGVKYQQTIPEKKRFSHALLKADQEGKTLSQPRAGVALMDEHIALLKTLQEECDLLPSTIDAYTRLNRYEEAAVGIQKSIEAGTSKLNGLPVVNHGVAACRRMTEALEKPVQVRHGTPDARLLAEISMASGFTSYEGGGISYNIPYAKRVTLEKSIRDWQYCDRLMGLYEEHGIRINREPFGPLTGTLIPPFMSHAVAIIEGLLALEQGVKSITVGYGQVGSLTQDIAAIKSLRELSHEYFGNYGFDDYELSTVFHQWMGGFPEDESKAFAIISWGAAVAGMSGATKVITKSPHEAFGIPTAAANAQGLRASRQMLNMVSDQKFPPCAAVDQEVELIKSEVRAVLKKVFELGNGDIARGTVLAFEAGVLDVPFAPASCNAGKILPVRDNSGAIRVLEAGAVPLPKDILALHHDYVAERAHFEGRKPSFQMVVDDINAVSHSQLIGRP
>LS483483.1|SQI88366.1|2029735_2030893_-|glutamate-mutase-L
MPSPRWGWCRPSPWSQQKSPPTRRGAKIAQYYSYKLNRHDIQALEASPPDILLFTGGTDGGEASYGLANAHALAESTLDCAIIYAGNRDIQDEIQTILGHKDLTTVDNILPDLDHPNPYAARKAICDVFLSRIVKGKGLDVIVAETGEEPMPTPWTVYELVKTISHYDSAWKEFMLIDMGGATTDVYSASANTLSPDTVLHGVPEPYVKRTVEGDLGMRVSAMVVGESARELVNVVFAHQPQRQEAFYRYLRHLVAQPDYLPASEEEKYFDTVLAGLCVGYASERHAGTKKQVCTCVGNVDLQMGRDLTPVRKVVGSGGWLSRASRFDIHRWLKYRELDDDGRRILLPTQFDYYRDAKGLLPLLANVARLYPELAARTSIHCLTL
>LS483483.1|SQI88367.1|2031124_2031574_-|methylaspartate-mutase-S-chain
MKKSTLVIGVIGADCHAVGNKVLDRVFTAHDFRVINLGVMVSQDEYIDAAIETGADAIVVSSIYGHGDIDCLGLRERCIERGIGDILLYVGGNLVVGKHDFADVEAKFKEMGFNRVFAPSHDLEDVCQLMANDINQRHGVKHPCLEEAI

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Crispr_ID: LS483483_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483483_2

2256622-2256771

Orphan

I-F

Consensus_repeat	Method
TGTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of LS483483_2

>merge|LS483483|2|2256622-2256771|CRISPRCasFinder
TGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGTCTGTTGCCAGAGCGAAACCACGGCTTGTTCACTGCCGTACAGGCAGCTTAGAAAGGATGACCGATCGTATCGGCATTTTTGAATTGGTTCACTGCCGTTCCGGCAGTTCAGTAA

>LS483483|2|2|2256622-2256771|CRISPRCasFinder
TGTTCACTGCCGTACAGGCAGCTTAGAAA	TTGCCGTCTGTTGCCAGAGCGAAACCACGGCT
TGTTCACTGCCGTACAGGCAGCTTAGAAA	GGATGACCGATCGTATCGGCATTTTTGAATT
GGTTCACTGCCGTTCCGGCAGTTCAGTAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483483.1\|SQI89069.1\|2267210_2267528_+\|ATP-dependent-Clp-protease-adaptor-protein-ClpS	unknown	unknown	gnl\|CDD\|225038
LS483483.1\|SQI89051.1\|2257797_2259450_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
LS483483.1\|SQI89024.1\|2248628_2249144_-\|lipoprotein	unknown	unknown	gnl\|CDD\|182526
LS483483.1\|SQI89047.1\|2256112_2256535_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|311556
LS483483.1\|SQI89057.1\|2261694_2262966_+\|OLD-family-ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|371507
LS483483.1\|SQI89041.1\|2252895_2253906_-\|Low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
LS483483.1\|SQI89035.1\|2250409_2251423_-\|nucleotide-di-P-sugar-epimerase-or-dehydratase	unknown	unknown	gnl\|CDD\|223528
LS483483.1\|SQI89063.1\|2264640_2266587_+\|macrolide-export-ATP-binding/permease-MacB	unknown	unknown	gnl\|CDD\|182528
LS483483.1\|SQI89056.1\|2260617_2261313_-\|aquaporin	unknown	unknown	gnl\|CDD\|235453
LS483483.1\|SQI89066.1\|2266655_2266886_-\|Cold-shock-protein-CspD	unknown	unknown	gnl\|CDD\|184960
LS483483.1\|SQI89026.1\|2249261_2249585_+\|Domain-of-uncharacterised-function-(DUF74)	unknown	unknown	gnl\|CDD\|179490
LS483483.1\|SQI89028.1\|2249581_2249938_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
LS483483.1\|SQI89043.1\|2254121_2254553_-\|pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
LS483483.1\|SQI89049.1\|2256818_2257787_-\|NADH-oxidoreductase-hcr	unknown	unknown	gnl\|CDD\|236735
LS483483.1\|SQI89038.1\|2251519_2252953_-\|NAD-dependent-epimerase/dehydratase	unknown	unknown	gnl\|CDD\|187556
LS483483.1\|SQI89054.1\|2259576_2260494_-\|surface-protein	unknown	unknown	gnl\|CDD\|225287
LS483483.1\|SQI89046.1\|2254522_2255839_-\|pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
LS483483.1\|SQI89031.1\|2249876_2250413_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
LS483483.1\|SQI89059.1\|2262979_2263354_+\|OLD-family-ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
LS483483.1\|SQI89061.1\|2263528_2264644_+\|macrolide-specific-efflux-protein-MacA	unknown	unknown	gnl\|CDD\|183211

Protein	Function_ID	Function_description	E-value
LS483483.1\|SQI89069.1\|2267210_2267528_+\|ATP-dependent-Clp-protease-adaptor-protein-ClpS	gnl\|CDD\|225038	COG2127, COG2127, Uncharacterized conserved protein [Function unknown].	2.44335e-47
LS483483.1\|SQI89051.1\|2257797_2259450_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
LS483483.1\|SQI89024.1\|2248628_2249144_-\|lipoprotein	gnl\|CDD\|182526	PRK10533, PRK10533, putative lipoprotein; Provisional.	1.07215e-114
LS483483.1\|SQI89047.1\|2256112_2256535_+\|DoxX-family-protein	gnl\|CDD\|311556	pfam07681, DoxX, DoxX. These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.	2.57462e-05
LS483483.1\|SQI89057.1\|2261694_2262966_+\|OLD-family-ATP-dependent-endonuclease	gnl\|CDD\|371507	pfam11398, DUF2813, Protein of unknown function (DUF2813). This entry contains YjbD from Escherichia coli, which is annotated as a nucleotide triphosphate hydrolase.	0
LS483483.1\|SQI89041.1\|2252895_2253906_-\|Low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
LS483483.1\|SQI89035.1\|2250409_2251423_-\|nucleotide-di-P-sugar-epimerase-or-dehydratase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	6.06704e-55
LS483483.1\|SQI89063.1\|2264640_2266587_+\|macrolide-export-ATP-binding/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
LS483483.1\|SQI89056.1\|2260617_2261313_-\|aquaporin	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.16082e-144
LS483483.1\|SQI89066.1\|2266655_2266886_-\|Cold-shock-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	1.34932e-46
LS483483.1\|SQI89026.1\|2249261_2249585_+\|Domain-of-uncharacterised-function-(DUF74)	gnl\|CDD\|179490	PRK02877, PRK02877, hypothetical protein; Provisional.	6.50282e-67
LS483483.1\|SQI89028.1\|2249581_2249938_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	4.52602e-31
LS483483.1\|SQI89043.1\|2254121_2254553_-\|pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	2.43537e-98
LS483483.1\|SQI89049.1\|2256818_2257787_-\|NADH-oxidoreductase-hcr	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
LS483483.1\|SQI89038.1\|2251519_2252953_-\|NAD-dependent-epimerase/dehydratase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.20187e-130
LS483483.1\|SQI89054.1\|2259576_2260494_-\|surface-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.05627e-93
LS483483.1\|SQI89046.1\|2254522_2255839_-\|pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
LS483483.1\|SQI89031.1\|2249876_2250413_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	1.00496e-65
LS483483.1\|SQI89059.1\|2262979_2263354_+\|OLD-family-ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	1.87647e-41
LS483483.1\|SQI89061.1\|2263528_2264644_+\|macrolide-specific-efflux-protein-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0

>LS483483.1|SQI89047.1|2256112_2256535_+|DoxX-family-protein
MAWGGISSMLVAKGLPGFIAYGVLAGEVVAPCLLIVGILTRPAALVLAFTMVVAWLMVGTGKTFALDAVGAWAIESLVYFFVGALAIAFLGQGAIPLAEPRPGAKCTRVSASPWPHPVCRGVAARFSDPFLGRYFKILIF
>LS483483.1|SQI89046.1|2254522_2255839_-|pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNRMGTIDWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVINRGVSVVVLPGDVALKPAPESASSHWYHAPLPQVTPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAAKLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLSALLPHLEEKTDRKFLDKALEHYRDARKGLDDLAKPSDKTLHPQYLAQRISHFADDDAIFTCDVGTPTVWAARYLQMNGKRRLIGSFNHGSMANAMPQAIGAKATAPTGRSWQCAATAALAC
>LS483483.1|SQI89043.1|2254121_2254553_-|pyruvate-dehydrogenase
MCGDGGFSMLMGDFLSLAQMKLPVKIVIFNNSVLGFVAMEMKAGGYLTDGTELHATNFARIAEACGIKGIRVEKAADVDQALQTAFNIDGPVLVDVVVASEELAMPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>LS483483.1|SQI89041.1|2252895_2253906_-|Low-specificity-L-threonine-aldolase
MAAPVGDDVYGDDPTVNELQRFAADLAGKEAAIFLPTGTQANLVALLSHCQRGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAADGSLPLDKVAAKIKPDDIHFAPTRLLSLENTHNGKVLPREYLKDAWEFTRQRGLGLHVDGARIFNAVVEYGCALGEITRYCDSFTICLSKGLGAPVGSLLVGSEAYIRRAIRWRKMVGGGMRQAGILAAAGLYALQNNVERLKEDHDNAAWMAEQLRAAGADVMRHDTNMLFVRVGEARAAALGEYLRERGVLINASPIVRLVTHIDVNRQQLAEVVSHWQTFFKSLRRPACRSEFWCLAPAVISASIW
>LS483483.1|SQI89038.1|2251519_2252953_-|NAD-dependent-epimerase/dehydratase
MSQRILVLGASGYIGQHLVTRLSEQGFTVLAAARQIDRLKKQHLPGVECYSLDLNQPDALPALLAQVDTVYYLVHGMGEGGDFIRHERQVALNVRDALRKTPVNEVIYLSSLQVAEEEQSDHLRARQITGDLLRESGIPVAEVRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLYYLLQLLNNPAAEHRIFEAAGPEILSYQQQFIRFMAVSGKRRPLIPIPFPTRWISVWFLNIITSVPSTTARALIQGLKHDLIADDRALRALIPQPLIAFDEAVRRTLKEEEQLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVNTSASLAALWKVVNQIGGKEGYFFGNALWKTRGSMDLLVGHRLAKGRPENEYLQTGDAVDSWKVIIVEPEKQLTLLFGMKAPGLGRLSFTLCDKGDHRELDVRAWWHPHGMPGLCYWLLMIPAHLFIFRGMARRIAHLAEQITIK
>LS483483.1|SQI89035.1|2250409_2251423_-|nucleotide-di-P-sugar-epimerase-or-dehydratase
MKVLVTGATSGLGRNAVEYLRNRGISVRATGRNEAMGKLLSKMGAEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFVHISSPSLYFDYHHHRDVQEDFRPQRFANEFARSKAASEDVIHLLAQANPNTRFTILRPQSLFGPHDKVFIPRLAQMMQHYGSVLLPRGGSALVDMTYYENAVHAMWLASQPQCDLLPSARAYNITNGEPQTLHSIVLKLIDELGIKCRIRSVPYPMLDIIARSMERFGNKSAKEPAFTHYGVSKLNFDFTLDISRAQQELGYQPVVNMDEGIIRTAAWLKDHGKLHY
>LS483483.1|SQI89031.1|2249876_2250413_+|N-acetylmuramoyl-L-alanine-amidase
MRGSASGAAARALTIPSIGIELENRGWQKTAGVKSFTPFNPAQIDALIPLAKDIIARYQILPQNVVAHADIAPQRKDDPGPLFPWRRLAEQGIGAWPDARRVAFYLQGRPSYEPVDTAELLDVLARYGYQVTPEMTPAQQKRVIMAFQMHFRPARWDGVADAQTLAIAEALLEKYGRG
>LS483483.1|SQI89028.1|2249581_2249938_+|N-acetylmuramoyl-L-alanine-amidase
MKRCRAGVLLALLLAGCVSEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADDFDVSLATLTDNQVSSHYLIPEKPPLHGGKPRIWQLVPEEDLAWHAGVSFWRGSTRINDTLDWH
>LS483483.1|SQI89026.1|2249261_2249585_+|Domain-of-uncharacterised-function-(DUF74)
MQFSTTPTLEGQPIIEYCGVVTGEAILGANVFRDFFASIRDIVGGRSGAYEKELRKAREIAFEELSEQAKALGANAVVGIDIDYETVGKDSSMLMVSVSGTAVKTRR
>LS483483.1|SQI89024.1|2248628_2249144_-|lipoprotein
MRYKVLALVLPCALALSACTTVTPAYKDNGTRSGPCIEGGPDDVAQKFYDYQLQNRNSDLTALRPYLSDGLAKLLNDARQDPSNNALLQSNLFSSSSTPADSAEVASASTIPNRDARNIPLRVELKQGTQSWKDEVLMIQEGQCWAVDDVRYLGNNGHAPAGTLRQSLEKR
>LS483483.1|SQI89049.1|2256818_2257787_-|NADH-oxidoreductase-hcr
MTMPTSQCPWRMQVHHIHQETPDVWTISLLCHDYYPYRAGQYALVSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGAGSQWLTRDVKRGDYIWLSDAMGDFTCDDKADDKFLMLAAGCGVTPIMSMRRWLAKYRPQADVQVIFNVRSPQDVIFAEEWRQYPVTLVAENNATHGFVAGRLTTELLQSVPDLASRTVMTCGPAPYMDLVEQEVKALGATRFFKEQFFTPVAVAATSGLKFTKLQPAKTFYAPVGTTLLEALESNKVPVTVACRAGVCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCQPQGDLVLA
>LS483483.1|SQI89051.1|2257797_2259450_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIASLQGLSAWALKAREYGIIDHDVDSFAPRAFFSTLTNVNFDSPRIVGYARQAIAMREALKARCLSIDAHATVNNPMAAVQLASDDLGDLQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLERSMEIGQMNFKVMSILDAGETTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVNHLEGEDFAPVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLDFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFFTPDLLAVLNEKFGLRSVTTVEEDMKQLLSA
>LS483483.1|SQI89054.1|2259576_2260494_-|surface-protein
MFSGLLIILLPLIAGYLIPLHRPSALKLIARLLSWIVYVILFFMGISLAFLDNLASNLLSILHYAAVSVVIILLCNIAALMWLEQKMPWQNHHRQEKLPSRLAMALESLQLCGVVLIGFLIGLSGLPFLQHATEASEYTLIFLLFLIGIQLRNNGMTLRQIVLNRRGMMVAVVVMVSSLLGGIINAFILDLPLKTGLAMASGFGWYSLSGILLTESYGPVIGSAAFFNDLARELLAIMLIPGAGTPQPFNGARPVRRNIDGFYAAGAAALRRRGDRAGSYCSWLHSQPAGAHPDGLFLRLIPLRR
>LS483483.1|SQI89056.1|2260617_2261313_-|aquaporin
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKEVIGYIIAQVVGGIIAAAILYIVASGKAGFDAAASGFASNGYGEHSPGGFSMLSAIVIEIVLTCGFLLVIHGATDKNAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALQQLWLFWVMPIIGGILGGVLYRTLLEKRS
>LS483483.1|SQI89057.1|2261694_2262966_+|OLD-family-ATP-dependent-endonuclease
MHLERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEFDLYHFVREDFWFPPGDVQGRERHLHIILTFRENEPGRHRVRRYRPLSNCWVPCDDGYQRVFYRLEGELADDDSVMTLRSFINGEGEALELEDIDELARHLVRLMPVLRLRDARFMRRIHNGTVPHSPQIEITARQLDFLSRELVHHPQNLTDGQIRQGLSAMVQLLEHYFAEQSSAQSRHRLMRRHSHDEQRSWRYLDIINRMIDKPGGRSHRVILLGLFSTLLQAKGTVRLDRDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEHVCRLVRESSRVSAWRLGPGGMNAEDSRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGVKVIEFAPVGFKTAD
>LS483483.1|SQI89059.1|2262979_2263354_+|OLD-family-ATP-dependent-endonuclease
MGIEWHVLVDGDEAGKKYAATVRSLLNDDKMLERDHLTALPAMDMEHFMYRQGFDDVYHRVAQLPMNIPMNMRRVITKAIHRSSKPDLAIEVAMEAGRRGVDAIPTLLKKMFSRVLWLARGRAD
>LS483483.1|SQI89061.1|2263528_2264644_+|macrolide-specific-efflux-protein-MacA
MKLNGKRRKIWWLLAIVVLALAVWGWRILNAPLPQYQTLVVRKGDLQQSVLATGKLDALKKVDVGAQVSGQLKTLRVEIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQLNQARAERKLSAATLARQQQLAQRQLVSRQDLDTAATDLAVKEAQIGTIEAQVKRNQATLDTAKTNLDYTKILAPMSGEVTQITTLQGQTVIAAQQAPNILTLADLSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGTLKDILPTPEKVNDAIFYYARFEVPNPQGILRLEMTAQVHIQLSEVKNVITIPLSALGEAIGDNRYHVRLLRTGEVKEREIVIGARNDTDVAVVKGLEEGDEVIIGEGAAGAAK
>LS483483.1|SQI89063.1|2264640_2266587_+|macrolide-export-ATP-binding/permease-MacB
MTALLELRDIRRSYPSGDGNVEVLKGITLSIAAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVARLNGDELARLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGAERKARLARAHELLVRLGLGDRAEYQPSQLSGGQQQRVSIARALMNGGEVILADEPTGALDSRSGEEVMGILHQLKAQGHTVIIVTHDPQVAAQAERVIEIHDGEIVRNPPALSSAQGGALRQRTAAEPSAWRQFSSGFREALVMAWRAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAIGTNTIDVYPGKDFGDDDPRYQQSLKYDDLLAIQKQPWVSSATPAVSKSLRLRADNIDVAASAEGVGAQYFNVYGMTFSEGNTFNELQLNSRAQVVVLDSNARRQLFPHKARVVGEVILVSNMPATVIGVADEKQSMFGSSKILRVWLPYTTMAGRVMGQSWLNSITVRVNEGYDSALAEQQLLRLLELRHGKKDVFTWNMDSILKTAERTTHTLQLFLTLVAVIALVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGVTLSLLIAFVLQLFLPGWEIGFSPLALLTAFLCSTLTGVLFGWLPARNAARLDPVDALARE
>LS483483.1|SQI89066.1|2266655_2266886_-|Cold-shock-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQAVRFDVHQGPKGNHASVIVPVEAEETETAA
>LS483483.1|SQI89069.1|2267210_2267528_+|ATP-dependent-Clp-protease-adaptor-protein-ClpS
MSKRDWLDFDQLIEDEVKDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYQGKAICGVFTAEVAETKVSMVNQYARENEHPLLCTLEKA

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Crispr_ID: LS483483_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483483_3

3623817-3623927

Orphan

Consensus_repeat	Method
CCTGTAGCCCGGGCAAGGCGCGGCCCTGCCGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483483_3

>merge|LS483483|3|3623817-3623927|CRISPRCasFinder
CCTGTAGCCCGGGCAAGGCGCGGCCCTGCCGCGCTGCCCCCGGGACTGCCCGCCGAACGGTCAGAATGAGCACAATGCCTGTAGCCCGGGCAAGGCGCGGCCCTACCGCGC

>LS483483|3|3|3623817-3623927|CRISPRCasFinder
CCTGTAGCCCGGGCAAGGCGCGGCCCTGCCGCGC	TGCCCCCGGGACTGCCCGCCGAACGGTCAGAATGAGCACAATG
CCTGTAGCCCGGGCAAGGCGCGGCCCTACCGCGC

Protein	Signature genes	Signature genes Name	Protein_function
LS483483.1\|SQI94183.1\|3631142_3631739_+\|cysteine-dioxygenase	unknown	unknown	gnl\|CDD\|227840
LS483483.1\|SQI94180.1\|3626780_3627755_-\|ABC-type-nitrate/sulfonate/bicarbonate-transport-system-protein	unknown	unknown	gnl\|CDD\|270276
LS483483.1\|SQI94173.1\|3619306_3620347_-\|iron-compound-permease-protein-of-ABC-transporter-family	unknown	unknown	gnl\|CDD\|223682
LS483483.1\|SQI94163.1\|3616397_3617297_-\|RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
LS483483.1\|SQI94184.1\|3631740_3632592_+\|Rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|238791
LS483483.1\|SQI94171.1\|3618257_3618428_-\|permease-of-ferrichrome-ABC-transporter	unknown	unknown	gnl\|CDD\|236720
LS483483.1\|SQI94182.1\|3630141_3631035_-\|putative-LysR-family-regulatory-protein	unknown	unknown	gnl\|CDD\|223656
LS483483.1\|SQI94164.1\|3617293_3618241_-\|iron-compound-binding-protein-of-ABC-transporter-family	unknown	unknown	gnl\|CDD\|238566
LS483483.1\|SQI94176.1\|3622330_3623731_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
LS483483.1\|SQI94177.1\|3623988_3624777_-\|alkanesulfonates-ABC-transporter-ATP-binding-protein-/-Sulfonate-ABC-transporter	unknown	unknown	gnl\|CDD\|213260
LS483483.1\|SQI94172.1\|3618428_3619310_-\|permease-of-ferrichrome-ABC-transporter	unknown	unknown	gnl\|CDD\|376439
LS483483.1\|SQI94175.1\|3621707_3622307_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|369481
LS483483.1\|SQI94185.1\|3632707_3633322_+\|Rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|238793
LS483483.1\|SQI94178.1\|3624770_3625766_-\|alkanesulfonates-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|223673
LS483483.1\|SQI94161.1\|3614699_3615467_-\|Amino-acid-ABC-transporter	unknown	unknown	gnl\|CDD\|223836
LS483483.1\|SQI94186.1\|3633387_3634200_-\|periplasmic-or-exported-protein	unknown	unknown	unknown
LS483483.1\|SQI94179.1\|3625746_3626784_-\|nitrate/sulfonate/bicarbonate-ABC-transporter-periplasmic-protein	unknown	unknown	gnl\|CDD\|223787
LS483483.1\|SQI94181.1\|3627766_3629905_-\|butyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|238527
LS483483.1\|SQI94174.1\|3620327_3621149_-\|transporter	unknown	unknown	gnl\|CDD\|224045
LS483483.1\|SQI94162.1\|3615531_3616302_-\|glutamine-ABC-transporter	unknown	unknown	gnl\|CDD\|270342

Protein	Function_ID	Function_description	E-value
LS483483.1\|SQI94183.1\|3631142_3631739_+\|cysteine-dioxygenase	gnl\|CDD\|227840	COG5553, COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only].	1.57119e-57
LS483483.1\|SQI94180.1\|3626780_3627755_-\|ABC-type-nitrate/sulfonate/bicarbonate-transport-system-protein	gnl\|CDD\|270276	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.11573e-104
LS483483.1\|SQI94173.1\|3619306_3620347_-\|iron-compound-permease-protein-of-ABC-transporter-family	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	1.09983e-70
LS483483.1\|SQI94163.1\|3616397_3617297_-\|RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.07515e-47
LS483483.1\|SQI94184.1\|3631740_3632592_+\|Rhodanese-related-sulfurtransferase	gnl\|CDD\|238791	cd01533, 4RHOD_Repeat_2, Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.	3.90099e-57
LS483483.1\|SQI94171.1\|3618257_3618428_-\|permease-of-ferrichrome-ABC-transporter	gnl\|CDD\|236720	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB.	8.10319e-09
LS483483.1\|SQI94182.1\|3630141_3631035_-\|putative-LysR-family-regulatory-protein	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.59419e-34
LS483483.1\|SQI94164.1\|3617293_3618241_-\|iron-compound-binding-protein-of-ABC-transporter-family	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	6.25653e-43
LS483483.1\|SQI94176.1\|3622330_3623731_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.8896e-64
LS483483.1\|SQI94177.1\|3623988_3624777_-\|alkanesulfonates-ABC-transporter-ATP-binding-protein-/-Sulfonate-ABC-transporter	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.74044e-107
LS483483.1\|SQI94172.1\|3618428_3619310_-\|permease-of-ferrichrome-ABC-transporter	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	3.43311e-52
LS483483.1\|SQI94175.1\|3621707_3622307_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|369481	pfam07715, Plug, TonB-dependent Receptor Plug Domain. The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.	3.79566e-19
LS483483.1\|SQI94185.1\|3632707_3633322_+\|Rhodanese-related-sulfurtransferase	gnl\|CDD\|238793	cd01535, 4RHOD_Repeat_4, Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.	1.48839e-67
LS483483.1\|SQI94178.1\|3624770_3625766_-\|alkanesulfonates-transport-system-permease-protein	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	6.99088e-39
LS483483.1\|SQI94161.1\|3614699_3615467_-\|Amino-acid-ABC-transporter	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.0052e-77
LS483483.1\|SQI94179.1\|3625746_3626784_-\|nitrate/sulfonate/bicarbonate-ABC-transporter-periplasmic-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	1.92257e-27
LS483483.1\|SQI94181.1\|3627766_3629905_-\|butyryl-CoA-dehydrogenase	gnl\|CDD\|238527	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).	2.06463e-85
LS483483.1\|SQI94174.1\|3620327_3621149_-\|transporter	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.25898e-118
LS483483.1\|SQI94162.1\|3615531_3616302_-\|glutamine-ABC-transporter	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.11621e-98

>LS483483.1|SQI94176.1|3622330_3623731_+|TonB-dependent-siderophore-receptor
MNVSYSHRNYSTPFDRGTIFDLNTGHAVNVDRKTRFDEPFNITDGYSDLAQLNAEYRLSDAWTARFDYSYSQDHYNDDQARVMAYDSATGNLTRRVDATHGSTQKMHSSRADLQGNVVIGGFYNEILTGLAYENYDLLRTDMIRCKNVKGFNIYNPVYGTVGKCSSASASDSDQRIQQESYAGYVQDALYLTDKWIAVAGVRYQYYTQYAGKGRPFNVNTDSSDQKWTPKAGLVYKLTPSVSLFGNVAQSFMPQSSIASYIGNLPPEESTAYELGAKFELFNGVTANIALFDIDKRNVLYTESVGDETVAKTAGKVRSRGVEVDVAGSLTDNLSVIASYGYTDAKVTDDPDYKGKPLPNVPKHTGSLFLSYDIHNVYDSNTLTVGGGGRAVSKRSGTNGADYYLQGYAVADVFAAYKMKLQYPVTLQVNVKNLFDKTYYTSSIGTNNLGNQIGDPREVQFTVKMDF
>LS483483.1|SQI94175.1|3621707_3622307_+|TonB-dependent-siderophore-receptor
MTVVADGSRQSATNGYQPVNTSTATLTSMPMLDIPQVVNTVSEQVLQDQHATNLDEALYNVANVVQTNTLGGTQDAFTRRGFGANRDGSIMTNGLRTVLPRSFTAATERVEVLKGPASTLYGILDPRRINQRGDQTPGAHFWRLCFRHLHQLLAAVPADLTSPAPLTGRRWRIGLLANISMKITGVISAKRRAALLTPL
>LS483483.1|SQI94174.1|3620327_3621149_-|transporter
MPQRVLPAEQGIVLDSLSAGYGQTLIIDNIHLTIPHGKMTVLAGANGSGKSTLLSTIARMLKPLGGCVRLDGEVIHQMPTREVSRRLGILPQSPLTPEGLTVFELVSRGRYPWQGLMRQWSQADERAVEEALRLTGTAEFAHLPVDSLSGGQRQRCWIAMALAQQTATILLDEPTTWLDLRYQVDILELLQTLTREHGRTVVTVLHDLNFAVNYADLLVFLKKGQIAGVINEQEICTPELIKNVFDVDVQMSLNPQTGKPFFMPFRAREEKAL
>LS483483.1|SQI94173.1|3619306_3620347_-|iron-compound-permease-protein-of-ABC-transporter-family
MRRKLYERLSAAAAAPTIPARLALVLLSLLLLGGSLVHLGLGARWIAPQTVLQALFHYDPRNFDHRIIVDLRLVRLAAALLTGAALGVAGLLLQTVIRNPLGEPHILGLNAGASLAVVATSALGISLGGVALARPLTAACGAALLFGGVMLLSSSGRGGVTPLRITLCGVALSAFASAVTAAILILDEQTLLAMRTWLAGDLAGLNWQTLRAALLPALAGLAIALIIAPRLNVLALGDKVALGLGVKIVQTRLLGLAAIALLCGSAVAVAGPIGFVGLVVPHAVRRLISEDIRLALPLAAPVGALVLLLADIAARTLAAPQELATGAMTALVGAPVFIVIAARFFK
>LS483483.1|SQI94172.1|3618428_3619310_-|permease-of-ferrichrome-ABC-transporter
MKNAVRRAGFRPLTCGRWHILLRPAALNIAAVALLVILLLALFGLTRGSFPMSSGTLFHALLGGENVGEQQRFILFDIRLPRLFMALLCGAMLGLAGAAMQSITRNGLADPGLIGVKEGASIVVLALVLFFPAVGLVWRPLAGMLGGVLVALLVLALARDCSRPRFILIGIGVSWTLAAAVGIFMTTADVRDVQTAMIWLAGSLHAATWPLLVVAFCWALPGAMILFLTARAADVALLGDRTAIGLGIRLQQLTLLRFFAPVLLTSASVSCVGSLGFVGLMAPHMARFLLRGG
>LS483483.1|SQI94171.1|3618257_3618428_-|permease-of-ferrichrome-ABC-transporter
MALLCGSALIGALLVLVTDTIGRLAFAPLQIPAGIVIALVGCPFFIVLLWRRRDAL
>LS483483.1|SQI94164.1|3617293_3618241_-|iron-compound-binding-protein-of-ABC-transporter-family
MRWFVSLLVLLAGVASAADTQTFTDDLGRTVTVPRHPQRIVSMHDLDITIPLIELGAPPVASHGRTRPDGSHFLRASAQLTGVDFDNSAIRFIGTADIDLEAVAAAKPDLIITEPSRHVSVEQLEKIAPTVSIDHLQGSAPRIYSKLAQLTGTQPRLLILERRYQAQIAQLKSIVDTQKIVVSVIQANNGKVTVHHAYHALGRVLRDAGFRFPPLIDNIPDGQRIDVSAEQLPALDADFVFATWRSDTGGRPQDELQAMESAMPGWCDFMRACRTGRYILLPREEVISNSYAALSLMVAQVQSHIAGRPLPEGLQ
>LS483483.1|SQI94163.1|3616397_3617297_-|RpiR-family-transcriptional-regulator
MKTVVKREKGRVDLFGERFRARAHQLSPRLLAVVSYINENREAVLDRTAMEIAAATNTSDATVVRAIQALGFAGLRELKQTMERWFGPSATSSEKMISTVSALSSDVNSSIDFVLDGHQRACEVLSRPANRAAVAQAVALLTDARQVGIFGIGASGILAEYTARLLSRIGLPSYVMNRTGFSLAEQLIGLQRGDVLIMMGQKSPHREGMTTLREARRLGIPTILLTQAVDSRFSQEAQVVIEVPRGGDNGRVPLHGTVLVCLEMIVLSVASTAPQKTVKSMKRINELHRAIGKSGGKRS
>LS483483.1|SQI94162.1|3615531_3616302_-|glutamine-ABC-transporter
MVKNWMKACCLVAAMIGTAQAAQQTYVVGSGGTYRPFEFENSQKQLEGFDIDIIKAIAKAEGFDIKLVNTPWEGIFATLSTGDRDIIISGITITDKRKQMVDFSAPYFPAEQSIVVPADSKVTSLEALKNEKVGVVNSSTGDIVVSEVLGKNSTSIKRFDNTPLMLQELFEDGVSAAVGDVGVVKYYIKQHPEKQFKLVPDAKFERQYFGIAVAKGNSELQAKINAGLQKIVADGTYAKIYKTWFDENVPTLPAQQ
>LS483483.1|SQI94161.1|3614699_3615467_-|Amino-acid-ABC-transporter
MTGFRWEIIEEYGPLFMDGALMTIKCTIICVILGTLWGLTLGLGRMAKAEHGVWKYVLRYLVQFPVRFYVSAFRGTPLFVQIMVVHFALVPLFINPRDGLLVTSGMMSADFARELRSNYGAFLSCIVAITLNAGAYVSEIFRAGIQSIDKGQMEASRALGMPWWKTMRQVILPQAFRRILPPLGNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLTISLVYWVITFLLAQLVNRLEKRFGKSDSHS
>LS483483.1|SQI94177.1|3623988_3624777_-|alkanesulfonates-ABC-transporter-ATP-binding-protein-/-Sulfonate-ABC-transporter
MVTANATSQAASTGAAVSISHLHHAFTLGKRTVPVLENISLQLRPGESVALLGPSGCGKSTLLRLLAGLEPQQAGQIQIDEAAMGGPGPERILVFQDPTLYPWLTVRQNVLLGPQAQGKKGLEPKADALIARMGLQAFSEALPRQLSGGMAQRAALARALLNEPRLLLLDEPLGKLDSLTRISMQRELIALWQQQGYTSLLVTHDIEEALLLCDRVLIMSPRPGRIIAEFALPLAYPRHRDNPLLLQHRQDILRILGQGEDW
>LS483483.1|SQI94178.1|3624770_3625766_-|alkanesulfonates-transport-system-permease-protein
MSTFSPERALARPASGRPRWTEGWLAAALWLLGGLYTLAWPDAGRRWPFSEGWALAQFTLGGGLLVLTLSYRYWRQRGTRLQHAGKWLALLPLLFALWEGLTAKTAFLPVPFFAPPQALIEVLHDDWPRLLDSLLHSLGLLGLGVLLGTSCGFISGLAIGWSQRIGYWVHPVLRLLGPVPSTALLPLCLFIFPSSFGASVFLIALSTWFPVTVLTWSGVIGIDKAWYDVARTLGASQRFLILRVAIPAALPNVFVGLFMGLGASFSVLIVAEMVGVKSGIGFYLQWAQGWAAYPNMYAALLVMALLCSGLISGLFMVRDRLLSWQRGGMQW
>LS483483.1|SQI94179.1|3625746_3626784_-|nitrate/sulfonate/bicarbonate-ABC-transporter-periplasmic-protein
MITSAFSRRRFLRLTGSLALAGASLPLWAHDMAAMASGEEHPALRLAQPYKIKLAINKSAVCLAPVAVAEQQKIFSKYNLDVEFVNFGNSTDVLLEAIATGKADAGVGMALRWLKALEQGFDVKLTAGTHGGCLNLLTAKNSPFGGLESLKGQTIGVTDMAGPDKNFFAILLKRHGIDPISDVQWKVYPADLLSVALDKREIAAISGSEPFSYRLLDTGKYQLIASNMTGDYARLSCCVLGVSGSLARDHKPAAAALTQAILEAHSYAAAHPESVAQSFLAHALNTNEAEVSGILHGQGHGHHAVGEAFVKELTQYAVDLQRVQVIKPGTDPHQFAESIYVNVFA
>LS483483.1|SQI94180.1|3626780_3627755_-|ABC-type-nitrate/sulfonate/bicarbonate-transport-system-protein
MRRFNVTALGGAIMLLILSGYAAAQERITLRIADQKGGMRSQLEAANALQNLPYEIKWAEFPAAAPLAEALNAGAVDAGIIGDAPLLFALANGAPVKAIAVDKSNPAGTAVLVSPGSALKSAADLKGKRIATGKGSIGHFVALKALEQAGISPKDVQWVFLGPVDAKVALLNGSVDAWATWEPYTTQLVKTAEGQILVSGKGLLPGNTFLAATDDALKDPQKRAALQDYLNRLAGAERWAYANLDSYGKTLGEIIRFPADIARAQFANRQSQWQPLNAKTVAQQQSTADFYLANGLIRAKLDVTPTFDNGFSVPAAQAHAEATP
>LS483483.1|SQI94181.1|3627766_3629905_-|butyryl-CoA-dehydrogenase
MRFAQTHEAAGFDRLLVGHWSDQPDGFLVTALAGLSTQKIGFLLAHRPGFVSPTLAARKFATLEHLLGGRLAVHIISGGNDAEQRRDGDYLDHDQRYARTDAFLETLRTVWTAEQPVDIANDFYQAEQAWSAIRPLQKPHIPLYFGGSSEAAIAVAGKHANVFALWGESLAQTEETIQRVRAEAAKHQREIDFSVSFRPIIAATEAEAWEKAEHILHVATERAAQSGDGFKAKPDSVGAQRLRATAAQGKVVDKRLWTGIAQLVGGGHNSTALVGTPEQVADALLDYYDLGVRNFLIRGFDPLNDAQEYGKALLPIAPRKSGPARRGGARIVNHPATDEWARRLAEIRQLMAEQAASLDASGDFPRDNIDRLRQRGFLSLAVPLQYGGAGADLPRLQQAIAAIAWGEPATALIVCMQYLHHLRLAENENWSEPLRQRVFHDAVERGGLINSLRVEPELGSPARGGLPQTVATRRAEGWQINGHKIYTTGIEGLSWLAIWGRSDDAPPLVGTWLVPRESDGISVVKSWDHGGMRATGSHEVVLNNVQVAADHAVDVWAADAPPAPDAEQFRLFANRHTALLAAIYDSIARAARDWLVSWLGTRIPGSLGQPLSSLPRVQEKVGQIDGWLLVNRSLLEKAAQLGFSAIEANLAKVTITDNAIQAVNLALELTGNHGLSRQNPLERHYRNVLCGRVHTPQSDSAWLAAGKHAFQK
>LS483483.1|SQI94182.1|3630141_3631035_-|putative-LysR-family-regulatory-protein
MRIDDIDALLATVQFSSLNQAAEYLGITQSAITRRLQRLEQTLNVTLLERQTRPLTLTAAGHRVYEQCLSIKRETKKLYGLLDPEAEPHGILRLGVPQSVAEIALQPALTALRQQFPALRPQVTCGWSGLLQKRLESVELDGVLAMGPEQQRFAEGYGGRLLCPLDIAVIAAKSWRLHAGALRDCAEKGWVLNPDGCGLRAGLIRELQSQGLRLALNVETAGAQLQISLVAQGLGLGLVPRAALAASPWRDEVTILTLADFQPEVHLWLVHAQNLANLSQPLTFFAGKVVQQLNVSG
>LS483483.1|SQI94183.1|3631142_3631739_+|cysteine-dioxygenase
MTAPRVEKLRQFIQDLDALHREFADEPALLDAVAQRLATLVKKDDWLPEEYTLPHPHHYQQYLLHADSGQRFSIVSFVWGPGQSTPIHDHRVWGAIGMLRGAEENQRYRLDERGQPVVSGVAERLSPGEVEKVSSRDGDIHRVSNALADSVSISIHVYGGNIGGVRRAVYTPEGLVKPFVSGYSNRHLPNIWDLSKDN
>LS483483.1|SQI94184.1|3631740_3632592_+|Rhodanese-related-sulfurtransferase
MPICSYRPTAQLRQALLDGAELALIDVREEADFARSHPLFAANLPLSKLELDVFRRVPRLTTPITVYDGGEGLAELAVERLQSWGYQDVALLEGGLSGWQRSGGELFQDVNSPSKAFGELVESERHTPSLSAGEVKALLEGQQEMVVVDARRFDEYHTMNIPGSISVPGGELALRIEGLIPSPQATVIVNCAGRTRSIIGTQSLRNAGLPNPVYALRNGTIGWTLAGLDLERGQQRRYDADFRASVERATAVRQLAERAGVAFIDTANPSALAAAARAYDLPV
>LS483483.1|SQI94185.1|3632707_3633322_+|Rhodanese-related-sulfurtransferase
MLIADDAIRAPITASWLAQMGWEVAVLNDARPEDFSERGTPAAKVPPGPQAEEISPQQLAEQLRVPGTVVLDFTTSANYVARHIPGAYWLVRSQLRQALEVIPQGERYVVTCGSSLLARYAVPEVAALTGKPVQLLSGGTLAWIDAGLALEHGETHLATPRSDRYQRPYEGTDNSPAAMQAYLDWEFGLVEQLARDGTHGFKVL
>LS483483.1|SQI94186.1|3633387_3634200_-|periplasmic-or-exported-protein
MNKGIDCGSAVPYGFSTVEENALVDSTEPTVTHAAPENLVVSDNWKNGGRTHNPETMTLVKFPIPPLPQGQDASLFKYQLRIYGGKVETNGADQIFLYPASNDWSANSVTWNHRPSCNYSSDGVLYLNSKREYRTIDVDKAVRKALAEGKTEISWYIGGDRQGNRYHFDPAGSQQEPMLMLMGFKNTPESLIAAIPREQSTARHNLPEAMLRLCPGYGMADGGKPVARAGALRRPREQRTARHNFPEAMLRICPGYGLADGSKPVARAGA

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Crispr_ID: LS483483_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483483_4

5018503-5018608

Orphan

Consensus_repeat	Method
TGCCCTCCTTTTGGAGGGCTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483483_4

>merge|LS483483|4|5018503-5018608|CRISPRCasFinder
TGCCCTCCTTTTGGAGGGCTTTTTTATGCCCGGGCGTTTTCCCCAGATCGCGCTGCGCTTATCCGGGCTACATGACTGACCCTGCCCTCCTTTTGGAGGGATTTTT

>LS483483|4|4|5018503-5018608|CRISPRCasFinder
TGCCCTCCTTTTGGAGGGCTTTTT	TATGCCCGGGCGTTTTCCCCAGATCGCGCTGCGCTTATCCGGGCTACATGACTGACCC
TGCCCTCCTTTTGGAGGGATTTTT

Protein	Signature genes	Signature genes Name	Protein_function
LS483483.1\|SQI97852.1\|5013256_5014252_+\|sucrose-specific-transcriptional-regulator-CscR	unknown	unknown	gnl\|CDD\|380511
LS483483.1\|SQI97865.1\|5025416_5025662_+\|type-IV-pilus-assembly-PilZ	unknown	unknown	unknown
LS483483.1\|SQI97861.1\|5023600_5023753_+\|putative-transport-protein	unknown	unknown	gnl\|CDD\|273283
LS483483.1\|SQI97855.1\|5017286_5018462_+\|Oligogalacturonate-lyase	unknown	unknown	gnl\|CDD\|291262
LS483483.1\|SQI97860.1\|5023065_5023569_+\|putative-transport-protein	unknown	unknown	gnl\|CDD\|273283
LS483483.1\|SQI97864.1\|5024655_5024997_+\|aldo-keto-reductase	unknown	unknown	gnl\|CDD\|236676
LS483483.1\|SQI97853.1\|5014252_5015671_-\|Arabinose-proton-symporter	unknown	unknown	gnl\|CDD\|273317
LS483483.1\|SQI97857.1\|5019736_5020912_-\|3-ketoacyl-CoA-thiolase	unknown	unknown	gnl\|CDD\|180261
LS483483.1\|SQI97848.1\|5008860_5009955_-\|glycoporin	unknown	unknown	gnl\|CDD\|374908
LS483483.1\|SQI97847.1\|5007525_5008548_+\|transposase,-IS110-family	unknown	unknown	gnl\|CDD\|226077
LS483483.1\|SQI97862.1\|5023938_5024058_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483483.1\|SQI97850.1\|5010321_5011755_-\|sucrose-6-phosphate-hydrolase	unknown	unknown	gnl\|CDD\|224536
LS483483.1\|SQI97856.1\|5018796_5019492_-\|N-acetylneuraminic-acid-outer-membrane-channel-protein-NanC	unknown	unknown	gnl\|CDD\|368776
LS483483.1\|SQI97859.1\|5022172_5022634_+\|Na(+)-translocating-NADH-quinone-reductase-subunit-E	unknown	unknown	gnl\|CDD\|226610
LS483483.1\|SQI97858.1\|5021338_5022076_-\|DNA-binding-protein-HpkR	unknown	unknown	gnl\|CDD\|223656
LS483483.1\|SQI97846.1\|5006880_5007135_+\|Oligogalacturonate-lyase	unknown	unknown	gnl\|CDD\|291262
LS483483.1\|SQI97854.1\|5015982_5016744_-\|2-deoxy-D-gluconate-3-dehydrogenase	unknown	unknown	gnl\|CDD\|181605
LS483483.1\|SQI97851.1\|5011773_5013015_-\|sucrose-permease	unknown	unknown	gnl\|CDD\|236549
LS483483.1\|SQI97849.1\|5009908_5010208_-\|glycoporin	unknown	unknown	gnl\|CDD\|371549
LS483483.1\|SQI97863.1\|5024119_5024467_+\|aldo-keto-reductase	unknown	unknown	gnl\|CDD\|236676

Protein	Function_ID	Function_description	E-value
LS483483.1\|SQI97852.1\|5013256_5014252_+\|sucrose-specific-transcriptional-regulator-CscR	gnl\|CDD\|380511	cd06288, PBP1_sucrose_transcription_regulator, ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	6.67903e-86
LS483483.1\|SQI97861.1\|5023600_5023753_+\|putative-transport-protein	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	3.7626e-10
LS483483.1\|SQI97855.1\|5017286_5018462_+\|Oligogalacturonate-lyase	gnl\|CDD\|291262	pfam14583, Pectate_lyase22, Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.	0
LS483483.1\|SQI97860.1\|5023065_5023569_+\|putative-transport-protein	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.20961e-52
LS483483.1\|SQI97864.1\|5024655_5024997_+\|aldo-keto-reductase	gnl\|CDD\|236676	PRK10376, PRK10376, putative oxidoreductase; Provisional.	8.69755e-65
LS483483.1\|SQI97853.1\|5014252_5015671_-\|Arabinose-proton-symporter	gnl\|CDD\|273317	TIGR00879, Membrane_transporter, MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.32814e-148
LS483483.1\|SQI97857.1\|5019736_5020912_-\|3-ketoacyl-CoA-thiolase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
LS483483.1\|SQI97848.1\|5008860_5009955_-\|glycoporin	gnl\|CDD\|374908	pfam16966, Porin_8, Porin-like glycoporin RafY. This is a family of Gram-negative Gammaproteobacteria putative raffinose-like porins.	0
LS483483.1\|SQI97847.1\|5007525_5008548_+\|transposase,-IS110-family	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.0208e-42
LS483483.1\|SQI97850.1\|5010321_5011755_-\|sucrose-6-phosphate-hydrolase	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	9.26353e-167
LS483483.1\|SQI97856.1\|5018796_5019492_-\|N-acetylneuraminic-acid-outer-membrane-channel-protein-NanC	gnl\|CDD\|368776	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.	5.39991e-58
LS483483.1\|SQI97859.1\|5022172_5022634_+\|Na(+)-translocating-NADH-quinone-reductase-subunit-E	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	2.88468e-56
LS483483.1\|SQI97858.1\|5021338_5022076_-\|DNA-binding-protein-HpkR	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.78358e-32
LS483483.1\|SQI97846.1\|5006880_5007135_+\|Oligogalacturonate-lyase	gnl\|CDD\|291262	pfam14583, Pectate_lyase22, Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.	1.57086e-26
LS483483.1\|SQI97854.1\|5015982_5016744_-\|2-deoxy-D-gluconate-3-dehydrogenase	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	0
LS483483.1\|SQI97851.1\|5011773_5013015_-\|sucrose-permease	gnl\|CDD\|236549	PRK09528, lacY, galactoside permease; Reviewed.	0
LS483483.1\|SQI97849.1\|5009908_5010208_-\|glycoporin	gnl\|CDD\|371549	pfam11471, Sugarporin_N, Maltoporin periplasmic N-terminal extension. This domain would appear to be the periplasmic, N-terminal extension of the outer membrane maltoporins, pfam02264, LamB.	5.53154e-06
LS483483.1\|SQI97863.1\|5024119_5024467_+\|aldo-keto-reductase	gnl\|CDD\|236676	PRK10376, PRK10376, putative oxidoreductase; Provisional.	1.26372e-35

>LS483483.1|SQI97855.1|5017286_5018462_+|Oligogalacturonate-lyase
MAKGMRVKLNYEVSRDPDTGAEITRLTPPEVTCHRNYFYQKCFFNDGSHLLFAGEFDGNWNYYLLDLAKAEAVQLTEGAGDNTFGGFLSPDDKSLYYVKNDRTLLEVNLTTLQEREVYRVADDWVGYGTWVANSDCTKLVGIEIAKSDWTPLNDWQIFHDFFHKGPHCRLLRVDLQTGESSVIHEEKKWLGHPIYRPFDDHTVAFCHEGPHDLVDARMWMVNEDGSNVRKVKEHAEGESCTHEFWVPNGSALVYVSYLKGQQGRTIYSFNPDTGVNEAVMQMPACSHLMSNFDGTLLVGDGSGTPVDVKDTSGYTIDNDPYLYAFDVAKQAYFRVARHDTSWATVANSRQVTHPHPSFTPDDSAILFSSDKDGKPAVYIAKLPPQPEMLKA
>LS483483.1|SQI97854.1|5015982_5016744_-|2-deoxy-D-gluconate-3-dehydrogenase
MILDAFSLQGKVAVVSGCDTGLGQGMAVGLAEAGCDIVGINIVEPTETIERVTALGRRFLSLTADLRQIDGIPQLLERAVAEFGHIDILVNNAGLIRREDAIEFSEKNWDDVMNLNIKSVFFMSQAAAKHFIAQGTGGKIINIASMLSFQGGIRVPSYTASKSAVMGVTRLLANEWAKHGINVNALAPGYMATNNTQQLRADEQRSSEILDRIPAGRWGLPSDLMGPVVFLASSASDYVNGYTVAVDGGWLAR
>LS483483.1|SQI97853.1|5014252_5015671_-|Arabinose-proton-symporter
MTSISHDSTTMPRSQRDTRRMNQFVSIAAAVAGLLFGLDIGVIAGALPFITDHFVLSSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMVGAVLFVAGSVGSAFATSVEMLLVARIVLGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVMAFLSDTAFSYSGNWRAMLGVLALPAVVLIILVIFLPNSPRWLAEKGRHVEAEEVLRMLRDTSEKARDELNEIRESLKLKQGGWALFKVNRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMVATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMAIGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDAIGAAGTFWLYTALNVAFIGVTFWLIPETKNVTLEHIERKLMSGEKLRNIGN
>LS483483.1|SQI97852.1|5013256_5014252_+|sucrose-specific-transcriptional-regulator-CscR
MASLKDVAKLANVSLMTVSRALNSPERLKPETLARVQAAIEQTNYVPDLSAKKIRGAHATPNTIGVLALDTVTTPFSVEITLSIEETARAHGWNSFVVNMFSDDSPETIVDLLLSHRPDGIIYTTMGLRQVPLPAKLLTLPCVLANCESLHDPVASYIPDDEQGQYTAVQALLAAGYRRPLCLHLPANHLATVRRREGLERACREAGIDPDTLDHSYMAYGDEHYRDIPAIVLAHIVRQTPQFDSVICGNDRIAFMVYQTLLAQGLRIPQDVAVVGYDNMVGIGDLFLPPLSTVQLPHYDIGRLSALHIINGDSHRETVRVASPWLPRDSL
>LS483483.1|SQI97851.1|5011773_5013015_-|sucrose-permease
MMKAHHSHSYPLLSALLFFFFVTWSSSGSLLSIWLHQEVGLKPGDTGIIFSVLSVSALFAQVCYGFIQDKLGLRKNLLWYITVLLILSGPAYMVFGYLLKINVLLGSIFGGIYIGLTFNGGIGVLESYTERVARQSQFEFGKARMWGSLGWAVATFFAGLLFNINPHLNFAVASCSGLVFFILLARLRVSSAPHAMQEAVSGGKVTLEDALRLLTLPRFWALVFFVIGTCIYGVYDQQFPVYFSSQFPTLQEGNEMYGYLNSFQVFLEAAGMFCAPWLVNRIGAKNGLIFAGMVMAMRMVASGLVEGPLLISITKLLHAVELPVLLVSIFKYNSLNFDKRLSSTLYLVGFACTSSVIATVLSPLAGYSYEKYGFAQSYLIMGLLVFCTTFISIFLLRSSKSSADPLMPQTSAI
>LS483483.1|SQI97850.1|5010321_5011755_-|sucrose-6-phosphate-hydrolase
MTYSISRAEQELQAKHEKLNLRWYPRYHLAARAGWINDPNGLVWFDGWYHAFYQHHPYSTKWGPMHWGHARSKDLVHWEHLPVALAPEGPEDKDGCFSGSAVVDGDTLALIYTGHKFHGDPSDEANLYQVQCLATSRDGIHFERQGIVVDTPPGMHHFRDPKVWREGDSWYMIVGARDGDTGQVRLYRSADLRQWQDAGVLDEAEKEMGYMWECPDFFALNGKHILMFSPQGLAAKGYQNRNLFQSGYLLGEWQPGQAFVREGAFVEMDHGHDFYAPQSFLTPDGRRIVIGWLDMWESPLPEQQDGWAGMLSLPRELSLSADNRLQMRPAKEVESMRGASFPWPVTTLKNQQTTMVENCEAMEAILHWDCASSNAEQYGLSLGDGLRVYVDAQMQRLVLERHYPQYGLCGTRSVPLTEGADLKLRVFFDSSSVEVFVNDGEACLSSRIYPDATRRELSLFAWSGSAYLTEAGAWQLE
>LS483483.1|SQI97849.1|5009908_5010208_-|glycoporin
MNKIWVGCVLTSLFTPLANAQAPLSLEERLAQMEQRLKATEQRAASAEAEIRALKGQETPAATVASAAPAKPALQLNDYGELKFYGDVEFNMGRRQSYR
>LS483483.1|SQI97848.1|5008860_5009955_-|glycoporin
MATLSLIWDGASRTGSLTSVKTSANKNWAPGDKERWDINGRILLGFDGLRKGANGKYAGFSVQPLADMNGKMNLDDAAFFFGQQDDWKIKIGRFEAYDMFPLNQDTFIEYSGNTANDLYSDGYGYIYMMKEGRGRSSSGGNFLLSKNIDNWYFEVNTLVEDGSSLFVDQNYHGNALDNRKNVVYVRPVASWQSGPWSVAAAMESNLVNNAYGYQNQNGRWVDQSSRTGYGMTMSWNTLKTDAEDGAVVNLSTAYLDAADEKDFSAGINALWHRVELGYIYAHNKIDQFNLSGVSAECDGDCAILTPGRYDIHTIHTSWQLPNIMDMPNFNIYLGAYASWLDSSAAKSGNTDERYGARVRFKYFF
>LS483483.1|SQI97847.1|5007525_5008548_+|transposase,-IS110-family
MNIKRIGLDLAKNVFQIHAVDHREHVVLRKTLRRDRMAAFFTQLSPCLIGIEACGSAHYWARELTRMGHTVRIIPPRLVKPYLKGQKNDANDAEAICEAVSRPGMRFVAIRTERQQTLQAEHRVRARLIRARTALSNEIRGLLGEFGVVLPAGIAQLRKALPEIVSQQVQWDECFIRLLCELSEELQGLDERVARHDRRLQQSARDDIRIKRLLAIEGMGPVVASALVAAVGDGRQFRSGREMAAYLGLVPRQHSSGGKARLGHISKRGDRYVRTLIIHGARAVLNACQNKTDRRSQWLQGVSERRNRNIATVALANKNARIAWALLSREEDYHGIQVTG
>LS483483.1|SQI97846.1|5006880_5007135_+|Oligogalacturonate-lyase
MAAWWVGDGAPHSTGDIQLNDPFIWVFDIAADRQTAVCRHDSTWKVIEGERQATHPHPSFSPDNRWVLFTSDKEGMPALYLAEV
>LS483483.1|SQI97856.1|5018796_5019492_-|N-acetylneuraminic-acid-outer-membrane-channel-protein-NanC
MFARSLALAALCGMSFAASAVTVDLRHEFIDGGKTDKTNADRVSVSHRFANGFGFSVEAKWKSGGDNTSQPYSDFVGNGHEESISWQWKANKNFSVTPGFNIESNDSRSIYKPNLRVQYSFDNGFYVAARYRYDYTRYPANAGKEDDKVNRGDAWAGYVFGDWRAELNYVYARSTEGVKRNDNKPYSQEYNLKVAYKLDKNWAPYGELGNVGVNDRSDRQTRFRVGVAYSF
>LS483483.1|SQI97857.1|5019736_5020912_-|3-ketoacyl-CoA-thiolase
MKDVVIVGALRTPIGCFQGTLSRHSAVELGSVVVKALVERSGVDPQSIDEVILGQVLTAGTGQNPARQSAIRGGLPNTVSAITINDVCGSGLKALHLATQAIQCGEADVVIAGGQENMSRAPHVLTDSRTGAQLGNSQLIDSLVHDGLWDAFNDYHMGVTAENLAREYNISRELQDAWALSSQHKARRAIDSGRFRDEIVPVASELNGTLRLVDTDEQPRVDPSAEALASLLPTFDLQGSVTAGNASSINDGAAAVMMMSEAKAEELGLPILARIRAFASVGVDPALMGIAPVHATRRCLERAGWKLDEVDLIEANEAFAAQAISVGRVLEWDERRVNVNGGAIALGHPIGASGCRILVSLVHEMIKRDARKGLATLCIGGGQGVALAVER
>LS483483.1|SQI97858.1|5021338_5022076_-|DNA-binding-protein-HpkR
MRYSPEALTAFVEAVACGSFSAAARRLRKSQSTISTAIANLEADLGVTLFDRTARQPALTPQGEQVLSYVKAILAASDRLDELAISLSGKTEARLTFVLSDTLHPDVLEDLLAQFDRHFPHTEFECLIGEDDDVIDLLQKERAQVGLIEARDNYPTEIGSIRLPMQTEMAIYVAPRHPLAAQGRVTRDELFSWRELRLSTYLENTTEPARGLVWSAPNYLLLFSMAAQGLGMVYFAQRAGGGVCR
>LS483483.1|SQI97859.1|5022172_5022634_+|Na(+)-translocating-NADH-quinone-reductase-subunit-E
MQQRHVQRKTLTERVIHAISFEGLATLILAPTAAWLMQRSVVEMGGLSILLATLAMVWNIIYNALFDRLWPTSRVVRNLRVRALHALGFESGFIIIGVTMVALVLGVSLMQAFMLEIGFMLFFLPYTMAFNWVWDMLRERVIKVRQQRIAARQ
>LS483483.1|SQI97860.1|5023065_5023569_+|putative-transport-protein
MVVLIYAVAITNSLAEQLARHVPITSQIRALLSLGVVLVLNLIFLMGRHVTIKVMGFLVFPLIACFLFLSIYLMGSWQPAYLTSQMQLSSHTFHQIWISIPVMVFAFSHTPIISTFAIDQQEKYGEQAMGKCKKIMKVAYTLICASVLFFVFSCLLSIPATLYSNRA
>LS483483.1|SQI97861.1|5023600_5023753_+|putative-transport-protein
MMPGSPAWLAVTGIIVAVVAMSKSFLGTYFGVIEGASEMVKTALAQAGDS
>LS483483.1|SQI97862.1|5023938_5024058_-|Uncharacterised-protein
MRILAERAANKEFAARQGLAKNITDTQSKPTTRVDEVTH
>LS483483.1|SQI97863.1|5024119_5024467_+|aldo-keto-reductase
MSSVKLSGTATLGDRQVYRLGYGAMQPCGTRRLRSAKRSANRYPRPGRKRSSRELHHIDTSDFYGPHITNQLIRQALHPYPDDLCIVTKVSARRDDKRQLATRHVARGAHSGGRR
>LS483483.1|SQI97864.1|5024655_5024997_+|aldo-keto-reductase
MTPVACVQNQYNVANRQDDPLIDELAAQNIVWVPFFPLGGFTPLQARELNEVAASLDATPMQVALAWLLQRSPNILLIPGTSSLQHLHENLAAAELTLPADALAILDNLQPHA
>LS483483.1|SQI97865.1|5025416_5025662_+|type-IV-pilus-assembly-PilZ
MKSLLFFREELRKQAEIEVFVNNKSTITQLTRVDFAEFHITTTCKIPAGHKVKFILHSDSGKIEFCSTAKENLCQQRRERQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_KX580713	Escherichia coli strain ZJ623 plasmid unnamed, complete sequence	16744-16775	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_KY352406	Salmonella enterica subsp. enterica serovar Typhimurium strain YL14P053 plasmid pMCR16_P053, complete sequence	41486-41517	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_KY463452	Escherichia coli strain WCHEC050622 plasmid pMCR_WCHEC1622, complete sequence	10836-10867	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NC_022650	Escherichia coli JJ1886 plasmid pJJ1886_4, complete sequence	29740-29771	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_KX377410	Klebsiella pneumoniae strain WCHKP1511 plasmid pMCR_1511, complete sequence	47367-47398	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_KP324830	Escherichia coli isolate FP671 plasmid pHNFP671, complete sequence	29083-29114	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_CP042602	Escherichia coli strain NCYU-29-69 plasmid pNCYU-29-69-3_MCR3, complete sequence	14829-14860	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	LC549805	Escherichia coli VNCEc117 plasmid pVNCEc117 DNA, complete sequence	33710-33741	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_CP032987	Escherichia coli strain BE2-5 plasmid pMCR_BE2-5, complete sequence	29467-29498	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_CP024128	Escherichia coli strain 14EC001 plasmid p14EC001a, complete sequence	6972-7003	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	LC532225	Enterobacter hormaechei subsp. xiangfangensis A2483 plasmid pA2483imp-1 DNA, complete sequence	33658-33689	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	LC532227	Enterobacter hormaechei subsp. xiangfangensis A2504 plasmid pA2504imp-1 DNA, complete sequence	54744-54775	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_CP044383	Klebsiella pneumoniae strain 2018S07-013 plasmid p2018S07-013-3_MCR3, complete sequence	8487-8518	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_AP023201	Escherichia coli strain TUM18780 plasmid pMTY18780-4, complete sequence	33144-33175	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_CP035195	Klebsiella pneumoniae strain LH102-A plasmid pLH102-A, complete sequence	9428-9459	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_AP021897	Escherichia coli strain 2018-02-2CC plasmid p2018_02_02CC, complete sequence	29626-29657	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_MH043623	Escherichia coli strain GDZJ002 plasmid pGDZJ002-1, complete sequence	40659-40690	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_MH043626	Escherichia coli strain GDZJ004 plasmid pGDZJ004, complete sequence	40367-40398	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_MF978389	Escherichia coli strain GDT6F36 plasmid pHNGDF36-1, complete sequence	45412-45443	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_MF990207	Escherichia coli strain GDP6F1 plasmid pHNGDF1-1, complete sequence	43107-43138	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_MG552133	Escherichia coli strain ECSC102 plasmid pECSC102, complete sequence	38661-38692	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_MF678351	Escherichia coli strain WCHEC025943 plasmid pMCR3_WCHEC1943, complete sequence	20421-20452	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_MF489760	Escherichia coli strain WCHEC-LL123 plasmid pMCR3_WCHEC-LL123, complete sequence	42056-42087	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_MF136778	Escherichia coli strain HKSHmcr1_P2_EC plasmid pHKSHmcr1_P2_p1, complete sequence	6305-6336	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_MH043625	Escherichia coli strain GDZJ003 plasmid pGDZJ003-1-MCR-3, complete sequence	40381-40412	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_CP027203	Escherichia coli strain WCHEC025943 plasmid pMCR3_025943, complete sequence	28110-28141	0	1.0
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_CP035638	Enterobacter cloacae strain EN3600 plasmid unnamed6, complete sequence	25805-25836	1	0.969
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	MN542377	Klebsiella pneumoniae subsp. pneumoniae strain 494 plasmid pKPC2_sg1, complete sequence	54634-54665	1	0.969
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	MN542378	Klebsiella pneumoniae subsp. pneumoniae strain 607 plasmid pKPC2_sg2, complete sequence	54634-54665	1	0.969
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NZ_CP030221	Salmonella enterica strain SA20021456 plasmid pSA20021456.2, complete sequence	28033-28064	1	0.969
LS483483_2	2.1\|2256651\|32\|LS483483\|CRISPRCasFinder	2256651-2256682	32	NC_023907	Escherichia coli strain HS102707 plasmid pHS102707, complete sequence	35751-35782	1	0.969

1. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_KX580713 (Escherichia coli strain ZJ623 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

2. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_KY352406 (Salmonella enterica subsp. enterica serovar Typhimurium strain YL14P053 plasmid pMCR16_P053, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

3. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_KY463452 (Escherichia coli strain WCHEC050622 plasmid pMCR_WCHEC1622, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

4. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NC_022650 (Escherichia coli JJ1886 plasmid pJJ1886_4, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

5. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_KX377410 (Klebsiella pneumoniae strain WCHKP1511 plasmid pMCR_1511, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

6. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_KP324830 (Escherichia coli isolate FP671 plasmid pHNFP671, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

7. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_CP042602 (Escherichia coli strain NCYU-29-69 plasmid pNCYU-29-69-3_MCR3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

8. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to LC549805 (Escherichia coli VNCEc117 plasmid pVNCEc117 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

9. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_CP032987 (Escherichia coli strain BE2-5 plasmid pMCR_BE2-5, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

10. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_CP024128 (Escherichia coli strain 14EC001 plasmid p14EC001a, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

11. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to LC532225 (Enterobacter hormaechei subsp. xiangfangensis A2483 plasmid pA2483imp-1 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

12. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to LC532227 (Enterobacter hormaechei subsp. xiangfangensis A2504 plasmid pA2504imp-1 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

13. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_CP044383 (Klebsiella pneumoniae strain 2018S07-013 plasmid p2018S07-013-3_MCR3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

14. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_AP023201 (Escherichia coli strain TUM18780 plasmid pMTY18780-4, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

15. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_CP035195 (Klebsiella pneumoniae strain LH102-A plasmid pLH102-A, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

16. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_AP021897 (Escherichia coli strain 2018-02-2CC plasmid p2018_02_02CC, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

17. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_MH043623 (Escherichia coli strain GDZJ002 plasmid pGDZJ002-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

18. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_MH043626 (Escherichia coli strain GDZJ004 plasmid pGDZJ004, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

19. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_MF978389 (Escherichia coli strain GDT6F36 plasmid pHNGDF36-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

20. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_MF990207 (Escherichia coli strain GDP6F1 plasmid pHNGDF1-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

21. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_MG552133 (Escherichia coli strain ECSC102 plasmid pECSC102, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

22. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_MF678351 (Escherichia coli strain WCHEC025943 plasmid pMCR3_WCHEC1943, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

23. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_MF489760 (Escherichia coli strain WCHEC-LL123 plasmid pMCR3_WCHEC-LL123, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

24. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_MF136778 (Escherichia coli strain HKSHmcr1_P2_EC plasmid pHKSHmcr1_P2_p1, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

25. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_MH043625 (Escherichia coli strain GDZJ003 plasmid pGDZJ003-1-MCR-3, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

26. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_CP027203 (Escherichia coli strain WCHEC025943 plasmid pMCR3_025943, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaaaccacggct	Protospacer
********************************

27. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_CP035638 (Enterobacter cloacae strain EN3600 plasmid unnamed6, complete sequence) position: , mismatch: 1, identity: 0.969

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccatctgttgccagagcgaaaccacggct	Protospacer
*****.**************************

28. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to MN542377 (Klebsiella pneumoniae subsp. pneumoniae strain 494 plasmid pKPC2_sg1, complete sequence) position: , mismatch: 1, identity: 0.969

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaagccacggct	Protospacer
***********************.********

29. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to MN542378 (Klebsiella pneumoniae subsp. pneumoniae strain 607 plasmid pKPC2_sg2, complete sequence) position: , mismatch: 1, identity: 0.969

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaagccacggct	Protospacer
***********************.********

30. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NZ_CP030221 (Salmonella enterica strain SA20021456 plasmid pSA20021456.2, complete sequence) position: , mismatch: 1, identity: 0.969

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccgtctgttgccagagcgaagccacggct	Protospacer
***********************.********

31. spacer 2.1|2256651|32|LS483483|CRISPRCasFinder matches to NC_023907 (Escherichia coli strain HS102707 plasmid pHS102707, complete sequence) position: , mismatch: 1, identity: 0.969

ttgccgtctgttgccagagcgaaaccacggct	CRISPR spacer
ttgccatctgttgccagagcgaaaccacggct	Protospacer
*****.**************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

141439 : 187250

Prochlorococcus_phage(16.67%)

transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI79402.1\|141439_141703_-\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI79405.1\|142016_142379_-\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI79408.1\|142326_142431_-\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI79410.1\|142420_142855_-	phosphopantetheine adenylyltransferase	NA	NA	NA	NA
SQI79413.1\|143130_143340_-	two-domain glycosyltransferase	NA	NA	NA	NA
SQI79416.1\|143423_144209_-	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA
SQI79420.1\|144580_144964_-	3-deoxy-D-manno-octulosonic-acid transferase	NA	NA	NA	NA
SQI79423.1\|145414_145675_-	glycosyltransferase	NA	NA	NA	NA
SQI79429.1\|145740_146220_-	glycosyltransferase	NA	NA	NA	NA
SQI79431.1\|146250_147345_-	glycosyltransferase	NA	NA	NA	NA
SQI79433.1\|147347_148475_-	UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG	NA	NA	NA	NA
SQI79436.1\|148471_149548_-	lipopolysaccharide heptosyltransferase III	NA	NA	NA	NA
SQI79438.1\|149659_150622_+	deacetylase	NA	NA	NA	NA
SQI79444.1\|150643_151726_+	heptosyl transferase	NA	NA	NA	NA
SQI79446.1\|151602_152391_-	O-antigen polymerase	NA	NA	NA	NA
SQI79449.1\|152897_153806_-	lipopolysaccharide core biosynthesis protein RfaZ	NA	NA	NA	NA
SQI79452.1\|153805_154777_-	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA
SQI79455.1\|154780_155407_-	ADP-heptose-lipooligosaccharide heptosyltransferase II	NA	NA	NA	NA
SQI79481.1\|155414_155840_-	ADP-heptose-lipooligosaccharide heptosyltransferase II	NA	NA	NA	NA
SQI79482.1\|155956_156901_-	ADP-L-glycero-D-manno-heptose-6-epimerase	R9S880	Prochlorococcus_phage	8.6e-36	36.1
SQI79490.1\|157115_158309_+	2-amino-3-ketobutyrate coenzyme A ligase	V5LQ39	Emiliania_huxleyi_virus	3.4e-37	29.6
SQI79492.1\|158318_159344_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	1.0e-18	82.7
SQI79498.1\|159506_160304_+	glycosyl transferase family protein	NA	NA	NA	NA
SQI79503.1\|160300_161188_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
SQI79506.1\|161239_162511_-	peptidase M37	G9BW84	Planktothrix_phage	2.1e-08	33.9
SQI79512.1\|162520_164065_-	phosphoglyceromutase	NA	NA	NA	NA
SQI79516.1\|164310_164742_+	Rhodanese-related sulfurtransferase	NA	NA	NA	NA
SQI79541.1\|164853_165105_+	glutaredoxin 3 (Grx3)	V9QKN6	Rhizobium_phage	7.6e-16	53.4
SQI79556.1\|165165_165633_+	protein export cytoplasm chaperone protein SecB	NA	NA	NA	NA
SQI79557.1\|165632_166649_+	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
SQI79558.1\|166729_167323_+	serine acetyltransferase	NA	NA	NA	NA
SQI79691.1\|167276_167552_+	serine acetyltransferase	NA	NA	NA	NA
SQI79697.1\|167656_168130_-\|tRNA	tRNA (cytosine34-2'-O-)-methyltransferase	NA	NA	NA	NA
SQI79700.1\|168256_169480_-	L-lactate dehydrogenase	NA	NA	NA	NA
SQI79703.1\|169479_170253_-	DNA-binding transcriptional repressor LldR	NA	NA	NA	NA
SQI79713.1\|170249_171905_-	L-lactate permease	NA	NA	NA	NA
SQI79715.1\|172584_173052_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI79717.1\|173088_173607_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI79719.1\|173928_174291_-	Protein of uncharacterised function (DUF2810)	NA	NA	NA	NA
SQI79721.1\|174566_174791_+	Uncharacterised protein	NA	NA	NA	NA
SQI79722.1\|174779_175313_-	mannitol repressor protein	NA	NA	NA	NA
SQI79723.1\|175372_176521_-	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
SQI79724.1\|176644_178555_-	PTS system protein	NA	NA	NA	NA
SQI79725.1\|179089_179305_+	GTPase	NA	NA	NA	NA
SQI79726.1\|179465_180602_+	tripartite multidrug resistance system membrane fusion protein	NA	NA	NA	NA
SQI79727.1\|180693_181302_+	glutathione S-transferase	NA	NA	NA	NA
SQI79728.1\|181397_182786_+\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
SQI79731.1\|182782_184630_+	Selenocysteine-specific translation elongation factor	A0A2K9KZ60	Tupanvirus	4.0e-13	25.1
SQI79732.1\|184698_185022_-	Uncharacterised protein	NA	NA	NA	NA
SQI79733.1\|185421_185910_+	electron transport protein YsaA	NA	NA	NA	NA
SQI79738.1\|186227_187250_-\|transposase	transposase, IS110 family	NA	NA	NA	NA

DBSCAN-SWA_2

1564156 : 1652233

Bacillus_virus(10.53%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI87027.1\|1564156_1564741_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.5e-64	63.9
SQI87029.1\|1564873_1566145_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.8e-128	57.6
SQI87031.1\|1566333_1567419_+\|protease	DNA-binding ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	1.2e-60	37.9
SQI87033.1\|1567471_1568557_+\|protease	DNA-binding ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	2.4e-135	65.0
SQI87035.1\|1568546_1568708_+\|protease	DNA-binding ATP-dependent protease La	NA	NA	NA	NA
SQI87037.1\|1569386_1571261_+	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQI87039.1\|1571409_1571577_+	competence protein ComEA	NA	NA	NA	NA
SQI87041.1\|1571590_1571779_+	competence protein ComEA	NA	NA	NA	NA
SQI87043.1\|1571889_1572294_+	4-hydroxybenzoyl-CoA thioesterase	NA	NA	NA	NA
SQI87045.1\|1572515_1573211_-	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.4e-88	68.0
SQI87047.1\|1573277_1574978_-	oligopeptide ABC transporter	NA	NA	NA	NA
SQI87049.1\|1575104_1575923_+	Cof protein	NA	NA	NA	NA
SQI87051.1\|1575969_1577022_-	cysteine synthase B	NA	NA	NA	NA
SQI87053.1\|1577137_1577596_+	HTH-type transcriptional regulator ybaO	NA	NA	NA	NA
SQI87055.1\|1577638_1579411_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.7e-48	28.8
SQI87057.1\|1579497_1581183_+	putative multidrug transporter membrane\ATP-binding components	W8CYL7	Bacillus_phage	1.3e-39	27.4
SQI87059.1\|1581182_1581413_+	Uncharacterised protein	NA	NA	NA	NA
SQI87061.1\|1581426_1581765_+	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQI87063.1\|1581798_1583085_+	ammonium transporter	NA	NA	NA	NA
SQI87065.1\|1583141_1584005_-	acyl-CoA thioesterase II	NA	NA	NA	NA
SQI87067.1\|1584534_1585044_+	glycoprotein-polysaccharide metabolism	NA	NA	NA	NA
SQI87069.1\|1585083_1585395_-	putative methyltransferase	NA	NA	NA	NA
SQI87071.1\|1585534_1585813_-	dTDP-glucose pyrophosphorylase	NA	NA	NA	NA
SQI87072.1\|1586516_1586774_+	Uncharacterised protein	NA	NA	NA	NA
SQI87073.1\|1586770_1586986_+	Uncharacterised protein	NA	NA	NA	NA
SQI87074.1\|1587119_1587707_-	transcriptional regulator	NA	NA	NA	NA
SQI87075.1\|1587711_1588548_-	transcriptional regulator	NA	NA	NA	NA
SQI87076.1\|1588635_1589250_+	membrane protein	NA	NA	NA	NA
SQI87077.1\|1589342_1589696_+	RNA signal recognition particle 4.5S RNA	NA	NA	NA	NA
SQI87078.1\|1589742_1590609_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
SQI87079.1\|1590776_1591049_+	transcriptional repressor RcnR	NA	NA	NA	NA
SQI87080.1\|1591051_1592638_-	cyclic diguanylate phosphodiesterase (EAL) domain-containing protein	NA	NA	NA	NA
SQI87081.1\|1592887_1593997_-	ABC transporter	G9BWD6	Planktothrix_phage	1.0e-24	34.1
SQI87082.1\|1594351_1594495_+	maltose/maltodextrinABC transporter substrate-binding protein MalE	NA	NA	NA	NA
SQI87083.1\|1594535_1595585_+	maltose/maltodextrinABC transporter substrate-binding protein MalE	NA	NA	NA	NA
SQI87084.1\|1595640_1596930_+	maltose/maltodextrin ABC transporter	NA	NA	NA	NA
SQI87085.1\|1596959_1597643_+	maltose/maltodextrin ABC transporter	NA	NA	NA	NA
SQI87086.1\|1597816_1599016_+	galactosidase	NA	NA	NA	NA
SQI87087.1\|1599051_1599246_+	beta-galactosidase	NA	NA	NA	NA
SQI87088.1\|1599256_1601110_+	beta-galactosidase	NA	NA	NA	NA
SQI87089.1\|1601175_1601490_+	PTS system protein	NA	NA	NA	NA
SQI87090.1\|1601612_1602884_-	maltoporin	NA	NA	NA	NA
SQI87091.1\|1603153_1603633_+	lac operon transcriptional repressor	C6ZCU4	Enterobacteria_phage	2.0e-28	48.6
SQI87092.1\|1603580_1604042_+	lac operon transcriptional repressor	C6ZCU4	Enterobacteria_phage	8.5e-29	45.5
SQI87093.1\|1604604_1604745_+	50S ribosomal protein L36	NA	NA	NA	NA
SQI87094.1\|1604844_1605441_-	GNAT family acetyltransferase	NA	NA	NA	NA
SQI87095.1\|1605543_1606998_+	transcriptional regulator	A0A1X9I5H2	Streptococcus_phage	8.1e-17	23.2
SQI87096.1\|1606972_1607407_-	inner membrane protein	NA	NA	NA	NA
SQI87097.1\|1607580_1608144_-	maltose O-acetyltransferase	NA	NA	NA	NA
SQI87098.1\|1608309_1608528_-	hemolysin expression modulating protein	NA	NA	NA	NA
SQI87099.1\|1609411_1612558_-	RND efflux system	S5VTK5	Leptospira_phage	7.0e-50	22.9
SQI87100.1\|1612580_1613774_-	RND family efflux transporter MFP subunit	NA	NA	NA	NA
SQI87101.1\|1614284_1614476_+	transcription repressor of multidrug efflux pump acrAB operon	NA	NA	NA	NA
SQI87102.1\|1614989_1615151_+	potassium efflux system KefA protein / Small-conductance mechanosensitive channel	NA	NA	NA	NA
SQI87103.1\|1615249_1617733_+	potassium efflux system KefA protein / Small-conductance mechanosensitive channel	NA	NA	NA	NA
SQI87104.1\|1617752_1618052_+	potassium efflux system KefA protein / Small-conductance mechanosensitive channel	NA	NA	NA	NA
SQI87105.1\|1618199_1618745_-\|transposase	transposase	Q2A0A7	Sodalis_phage	1.0e-36	50.0
SQI87106.1\|1618770_1619013_-\|transposase	transposase	NA	NA	NA	NA
SQI87107.1\|1619078_1619252_-	inner membrane protein	NA	NA	NA	NA
SQI87108.1\|1619266_1619794_-	primosomal replication protein N''	NA	NA	NA	NA
SQI87109.1\|1619863_1620241_+	membrane protein	NA	NA	NA	NA
SQI87110.1\|1620391_1620943_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.3e-28	45.2
SQI87111.1\|1622997_1623330_+	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQI87112.1\|1623329_1623935_+	Recombination protein RecR	NA	NA	NA	NA
SQI87113.1\|1624047_1625922_+	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.2e-110	36.0
SQI87114.1\|1626230_1626875_+	adenylate kinase	NA	NA	NA	NA
SQI87115.1\|1627002_1627965_+	ferrochelatase	NA	NA	NA	NA
SQI87116.1\|1628028_1628718_+	inosine-guanosine kinase	NA	NA	NA	NA
SQI87117.1\|1628671_1629142_+	inosine-guanosine kinase	NA	NA	NA	NA
SQI87118.1\|1629080_1629335_+	inosine-guanosine kinase	NA	NA	NA	NA
SQI87119.1\|1629378_1630668_-	Potassium/proton antiporter RosB	NA	NA	NA	NA
SQI87120.1\|1630627_1631056_-	Potassium/proton antiporter RosB	NA	NA	NA	NA
SQI87121.1\|1631424_1632027_-	fosmidomycin resistance protein	NA	NA	NA	NA
SQI87122.1\|1632019_1632646_-	fosmidomycin resistance protein	NA	NA	NA	NA
SQI87123.1\|1632809_1632929_+	UDP-sugar hydrolase	NA	NA	NA	NA
SQI87124.1\|1633017_1633875_+	UDP-sugar hydrolase	NA	NA	NA	NA
SQI87125.1\|1633843_1634464_+	UDP-sugar hydrolase	NA	NA	NA	NA
SQI87126.1\|1634589_1635069_-	YbaK family protein	NA	NA	NA	NA
SQI87127.1\|1636332_1636629_-	Lead, cadmium, zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	4.6e-12	50.5
SQI87128.1\|1636600_1637806_-	Lead, cadmium, zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	2.1e-63	40.6
SQI87129.1\|1637753_1638836_-	Lead, cadmium, zinc and mercury transporting ATPase	NA	NA	NA	NA
SQI87130.1\|1638942_1639353_+	HTH-type transcriptional regulator cueR	NA	NA	NA	NA
SQI87131.1\|1639349_1639652_-\|protease	activity regulator of membrane protease YbbK	NA	NA	NA	NA
SQI87132.1\|1639624_1639813_-\|protease	activity regulator of membrane protease YbbK	NA	NA	NA	NA
SQI87133.1\|1639809_1640727_-\|protease	stomatin/prohibitin-family membrane protease subunit YbbK	NA	NA	NA	NA
SQI87134.1\|1640863_1641544_+	YbbL ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.2e-24	35.4
SQI87135.1\|1641530_1642313_+	YbbM seven transmembrane helix protein	NA	NA	NA	NA
SQI87136.1\|1642410_1643265_-	thioredoxin domain-containing protein EC-YbbN	NA	NA	NA	NA
SQI87137.1\|1643326_1644097_-	short chain dehydrogenase	NA	NA	NA	NA
SQI87138.1\|1644125_1644719_-\|protease	multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1	NA	NA	NA	NA
SQI87139.1\|1644719_1645406_+	metabolite ABC transporter	G9BWD6	Planktothrix_phage	7.6e-34	36.5
SQI87140.1\|1645402_1646368_+	metabolite ABC transporter	NA	NA	NA	NA
SQI87141.1\|1646327_1647821_+	metabolite ABC transporter	NA	NA	NA	NA
SQI87142.1\|1647919_1648075_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI87143.1\|1648118_1648943_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI87144.1\|1649504_1649678_-	protein ydhR	NA	NA	NA	NA
SQI87145.1\|1649887_1651033_+	outer membrane protein	NA	NA	NA	NA
SQI87146.1\|1651150_1652233_-\|tRNA	Selenophosphate-dependent tRNA 2-selenouridine synthase	NA	NA	NA	NA

DBSCAN-SWA_3

2174432 : 2189862

Salmonella_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI88781.1\|2174432_2175446_-	transporter	A0A0U2JGI6	Escherichia_phage	2.5e-89	50.4
SQI88784.1\|2175445_2175661_-	putative excisionase	NA	NA	NA	NA
SQI88786.1\|2175748_2176093_-	Uncharacterised protein	NA	NA	NA	NA
SQI88788.1\|2176089_2176314_-	Uncharacterised protein	A0A286S2B3	Klebsiella_phage	4.3e-18	59.5
SQI88790.1\|2177121_2177346_-	Uncharacterised protein	NA	NA	NA	NA
SQI88791.1\|2177731_2178139_-	transcriptional repressor DicA	B1B6L9	Salmonella_phage	1.2e-13	54.9
SQI88803.1\|2178215_2178443_+	DNA-binding transcriptional regulator DicC	K7PHK4	Enterobacteria_phage	1.4e-08	44.3
SQI88805.1\|2178426_2178852_+	Protein of uncharacterised function (DUF1019)	NA	NA	NA	NA
SQI88807.1\|2178865_2179120_+	Uncharacterised protein	NA	NA	NA	NA
SQI88810.1\|2179116_2180193_+	Replication protein O	U5P0A0	Shigella_phage	2.3e-21	48.9
SQI88811.1\|2180205_2180499_+	Uncharacterised protein	NA	NA	NA	NA
SQI88814.1\|2180495_2180708_+	Uncharacterised protein	NA	NA	NA	NA
SQI88817.1\|2180700_2181486_+	PRTRC system ParB family protein	A4JX52	Burkholderia_virus	6.9e-63	51.3
SQI88819.1\|2181482_2182559_+	DGQHR domain	T1SBJ4	Salmonella_phage	1.4e-146	73.0
SQI88820.1\|2182551_2182941_+	Uncharacterised protein	A0A220NQV2	Salmonella_phage	9.1e-08	65.9
SQI88823.1\|2182933_2183125_+	Uncharacterised protein	NA	NA	NA	NA
SQI88826.1\|2183563_2183857_+	Uncharacterised protein	NA	NA	NA	NA
SQI88827.1\|2184278_2184512_+	DinI family protein	H6WRY5	Salmonella_phage	5.8e-26	70.1
SQI88830.1\|2184638_2184821_+	Uncharacterised protein	NA	NA	NA	NA
SQI88833.1\|2184987_2185293_+	Protein of uncharacterised function (DUF968)	Q6V7S4	Burkholderia_virus	1.2e-23	55.8
SQI88835.1\|2185289_2185949_+	DNA adenine methylase	Q8HA94	Salmonella_phage	2.2e-102	80.8
SQI88838.1\|2185945_2186524_+	Protein of uncharacterised function (DUF1133)	A0A0U2S606	Escherichia_phage	1.8e-44	53.3
SQI88840.1\|2186666_2188058_+	Predicted ATPase (AAA+ superfamily)	NA	NA	NA	NA
SQI88843.1\|2188149_2188536_+	putative prophage membrane protein	A0A192Y8P2	Salmonella_phage	1.0e-56	90.6
SQI88846.1\|2188885_2189434_+	lytic enzyme	G8C7W0	Escherichia_phage	3.1e-94	92.3
SQI88848.1\|2189441_2189717_+	Uncharacterised protein	G8C7W1	Escherichia_phage	2.5e-12	46.1
SQI88850.1\|2189661_2189862_+	Uncharacterised protein	A0A286SGR9	Klebsiella_phage	2.8e-21	74.2

DBSCAN-SWA_4

2193354 : 2224421

Enterobacteria_phage(58.06%)

capsid,tail,head,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI88872.1\|2193354_2193774_+	Uncharacterised protein	Q6UAS0	Klebsiella_phage	2.3e-33	53.6
SQI88875.1\|2194067_2194613_+	Phage DNA packaging protein Nu1	A0A0K2FIG2	Enterobacteria_phage	4.0e-86	86.7
SQI88877.1\|2194587_2196510_+\|terminase	phage terminase large subunit	E4WL19	Enterobacteria_phage	0.0e+00	89.5
SQI88879.1\|2196509_2196716_+	gpW	K7PM10	Enterobacteria_phage	6.7e-26	88.1
SQI88882.1\|2196712_2198305_+\|portal	phage portal protein, lambda family	E4WL21	Enterobacteria_phage	5.7e-274	87.2
SQI88884.1\|2198285_2198483_+	Uncharacterised protein	E4WL22	Enterobacteria_phage	4.4e-19	88.9
SQI88887.1\|2198469_2198949_+	serine peptidase	O64320	Escherichia_phage	4.4e-44	83.5
SQI88890.1\|2198920_2199403_+	serine peptidase	A0A0K2FI53	Enterobacteria_phage	9.1e-42	61.3
SQI88891.1\|2199629_2199962_+\|head	Bacteriophage lambda head decoration protein D	E4WL24	Enterobacteria_phage	1.1e-43	79.1
SQI88895.1\|2200028_2201054_+\|capsid	Phage major capsid protein E	K7P6G7	Enterobacteria_phage	1.2e-179	92.7
SQI88897.1\|2201105_2201213_+	Uncharacterised protein	A0A0K2FIR1	Enterobacteria_phage	3.9e-06	76.5
SQI88900.1\|2201202_2201514_+	Uncharacterised protein	K7P7M3	Enterobacteria_phage	1.2e-07	40.4
SQI88903.1\|2201524_2201878_+	Phage Head-Tail Attachment	K7PHD8	Enterobacteria_phage	9.6e-41	65.8
SQI88905.1\|2201886_2202471_+\|tail	prophage minor tail Z family protein	M9NZH5	Enterobacteria_phage	8.7e-79	78.4
SQI88906.1\|2202467_2202866_+\|tail	minor tail protein U	K7P7G5	Enterobacteria_phage	8.6e-54	73.5
SQI88908.1\|2203038_2203617_+	Bacterial Ig-like domain (group 2)	K7PKX6	Enterobacterial_phage	6.4e-74	83.0
SQI88911.1\|2203627_2204056_+	gp14	M9NZD7	Enterobacteria_phage	1.7e-36	59.3
SQI88914.1\|2204375_2205749_+\|tail	Prophage tail length tape measure	E4WL33	Enterobacteria_phage	6.2e-168	75.3
SQI88916.1\|2205703_2207521_+\|tail	phage tail tape measure protein, lambda family	E4WL33	Enterobacteria_phage	1.7e-213	67.1
SQI88919.1\|2207571_2207919_+\|tail	phage minor tail protein	K7PJT2	Enterobacteria_phage	6.4e-37	65.2
SQI88921.1\|2207915_2208671_+	gp18	Q6UAW5	Klebsiella_phage	1.1e-131	86.1
SQI88924.1\|2208672_2209410_+	gp19	Q6UAW4	Klebsiella_phage	2.2e-135	90.6
SQI88927.1\|2209777_2210368_+\|tail	bacteriophage lambda tail assembly I	K7PHE5	Enterobacteria_phage	5.7e-78	75.0
SQI88930.1\|2210441_2211074_-	Uncharacterised protein	NA	NA	NA	NA
SQI88933.1\|2211236_2213228_+	gp24	Q6UAW1	Klebsiella_phage	0.0e+00	94.1
SQI88936.1\|2213244_2218476_+	gp24	A0A0P0IKE4	Klebsiella_phage	3.1e-151	38.1
SQI88939.1\|2218441_2220247_+	Gp21	A0A0P0IKE4	Klebsiella_phage	1.6e-38	34.2
SQI88942.1\|2220581_2221787_+\|tail	putative phage tail protein	A0A0D4D9I5	Escherichia_phage	1.4e-19	30.5
SQI88945.1\|2222291_2222531_+	Uncharacterised protein	I6PD82	Cronobacter_phage	2.8e-20	54.4
SQI88947.1\|2222533_2222833_+	Uncharacterised protein	K7PGV5	Enterobacterial_phage	1.8e-19	51.0
SQI88950.1\|2223208_2224075_+	D-alanyl-D-alanine carboxypeptidase fraction C	B6DZZ7	Stx2-converting_phage	4.0e-72	52.3
SQI88954.1\|2224046_2224421_+	D-alanyl-D-alanine carboxypeptidase fraction C	B6DZZ7	Stx2-converting_phage	4.3e-15	36.4

DBSCAN-SWA_5

2583554 : 2658168

Enterobacteria_phage(51.22%)

plate,transposase,tRNA,capsid,tail,portal,integrase,terminase

attL 2616765:2616781|attR 2652895:2652911

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI90930.1\|2583554_2584577_-\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI90931.1\|2584938_2585220_+	Uncharacterised protein	NA	NA	NA	NA
SQI90932.1\|2585270_2586317_-	ABC transporter	NA	NA	NA	NA
SQI90933.1\|2586313_2587099_-	spermidine/putrescine ABC transporter membrane protein	NA	NA	NA	NA
SQI90934.1\|2587095_2587953_-	Spermidine Putrescine ABC transporter permease PotB	NA	NA	NA	NA
SQI90935.1\|2587936_2589073_-	putrescine transport ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	1.7e-30	42.0
SQI90936.1\|2589330_2590560_+	Tripeptide aminopeptidase	NA	NA	NA	NA
SQI90937.1\|2590607_2591729_-	putative enzyme	NA	NA	NA	NA
SQI90938.1\|2591815_2593045_-	sensor protein PhoQ	NA	NA	NA	NA
SQI90939.1\|2593064_2593283_-	sensor protein PhoQ	NA	NA	NA	NA
SQI90940.1\|2593279_2593525_-	DNA-binding transcriptional regulator PhoP	NA	NA	NA	NA
SQI90941.1\|2594142_2594394_-	transcriptional regulator	NA	NA	NA	NA
SQI90942.1\|2594852_2595806_+	major facilitator superfamily permease	NA	NA	NA	NA
SQI90943.1\|2595855_2597226_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.1e-107	44.9
SQI90944.1\|2597229_2597871_-	putative lysogenization regulator	NA	NA	NA	NA
SQI90945.1\|2597930_2598332_-	thiouridylase	NA	NA	NA	NA
SQI90946.1\|2598363_2599083_-	thiouridylase	NA	NA	NA	NA
SQI90947.1\|2599076_2599553_-	Nudix-like NDP and NTP phosphohydrolase YmfB	NA	NA	NA	NA
SQI90948.1\|2599573_2600224_-	ribosomal large subunit pseudouridine synthase E	NA	NA	NA	NA
SQI90949.1\|2600460_2601711_+	Isocitrate dehydrogenase	Q77Z09	Phage_21	4.4e-19	90.7
SQI90950.1\|2601807_2602146_-	Uncharacterised protein	NA	NA	NA	NA
SQI90951.1\|2602342_2602783_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.1e-20	44.1
SQI90952.1\|2602799_2604113_-	diguanylate cyclase	NA	NA	NA	NA
SQI90953.1\|2604208_2605396_-	HD-GYP domain-containing protein	NA	NA	NA	NA
SQI90954.1\|2605674_2606718_+	L-asparaginase, type II	NA	NA	NA	NA
SQI90955.1\|2606626_2607112_-	iron(III) dicitrate transport ATP-binding protein FecE	NA	NA	NA	NA
SQI90956.1\|2607108_2607480_-	iron(III) dicitrate transport system periplasmic iron-binding protein FecB	NA	NA	NA	NA
SQI90957.1\|2607560_2609891_-	iron(III) dicitrate transport protein FecA	NA	NA	NA	NA
SQI90958.1\|2609989_2610937_-	iron(III) dicitrate transmembrane sensor protein FecR	NA	NA	NA	NA
SQI90959.1\|2610933_2611455_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
SQI90960.1\|2611712_2612501_+	SAM-dependent methyltransferase	NA	NA	NA	NA
SQI90961.1\|2613038_2613503_+	lipid A biosynthesis lauroyl acyltransferase	A0A1W6JP29	Morganella_phage	1.3e-21	48.0
SQI90962.1\|2613477_2613954_+	lipid A biosynthesis lauroyl acyltransferase	A0A1W6JP29	Morganella_phage	1.5e-41	52.5
SQI90963.1\|2614043_2614682_+	transport protein	NA	NA	NA	NA
SQI90964.1\|2614810_2615074_+	inner membrane protein	NA	NA	NA	NA
SQI90965.1\|2615462_2615564_-	membrane protein	NA	NA	NA	NA
SQI90966.1\|2615621_2616635_-	GAF domain/diguanylate cyclase	NA	NA	NA	NA
2616765:2616781	attL	NA	NA	NA	NA
SQI90967.1\|2617147_2617882_-\|integrase	integrase	Q83VS6	Escherichia_phage	4.1e-110	80.6
SQI90968.1\|2617997_2618297_-	Uncharacterised protein	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
SQI90969.1\|2618417_2618684_+	Regulatory phage protein cox	Q1JS60	Enterobacteria_phage	4.4e-14	84.4
SQI90970.1\|2618717_2618936_+	Uncharacterised protein	A0A0M5M1I3	Salmonella_phage	4.7e-06	49.1
SQI90971.1\|2618951_2619329_+	Uncharacterised protein	NA	NA	NA	NA
SQI90972.1\|2619344_2619479_+	Uncharacterised protein	NA	NA	NA	NA
SQI90973.1\|2619686_2619911_+	Uncharacterised protein	NA	NA	NA	NA
SQI90974.1\|2619907_2620486_+	exodeoxyribonuclease VIII	A0A192Y6E0	Salmonella_phage	8.4e-34	40.0
SQI90975.1\|2620574_2621594_+	phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	B7SYG0	Stenotrophomonas_phage	1.9e-65	42.9
SQI90976.1\|2621590_2621764_+	Uncharacterised protein	NA	NA	NA	NA
SQI90977.1\|2621763_2622399_+	Uncharacterised protein	A0A0M4RTM8	Salmonella_phage	1.3e-35	42.0
SQI90978.1\|2622505_2624383_+	gp36	A0A0M4RTM8	Salmonella_phage	5.0e-128	53.1
SQI90979.1\|2624379_2624637_+	Uncharacterised protein	NA	NA	NA	NA
SQI90980.1\|2624954_2625878_+	Uncharacterised protein	NA	NA	NA	NA
SQI90981.1\|2625861_2626455_+	Uncharacterised protein	NA	NA	NA	NA
SQI90982.1\|2627015_2627222_+	Uncharacterised protein	NA	NA	NA	NA
SQI90983.1\|2627740_2628241_+	Uncharacterised protein	NA	NA	NA	NA
SQI90984.1\|2628272_2629061_-\|portal	phage portal protein, PBSX family	A0A0A7NPT9	Enterobacteria_phage	7.8e-115	73.5
SQI90985.1\|2629113_2629320_-\|portal	phage portal protein, PBSX family	A0A0A7NPT9	Enterobacteria_phage	1.3e-10	52.5
SQI90986.1\|2629322_2629991_-\|terminase	terminase, ATPase subunit	A0A0A7NV54	Enterobacteria_phage	5.3e-80	66.1
SQI90987.1\|2629947_2631051_-\|terminase	terminase, ATPase subunit	A0A0A7NV54	Enterobacteria_phage	6.1e-142	69.0
SQI90988.1\|2631208_2632048_+\|capsid	Presumed capsid scaffolding protein (GpO)	A0A0A7NRY7	Enterobacteria_phage	3.9e-96	67.0
SQI90989.1\|2632057_2632153_+	Uncharacterised protein	NA	NA	NA	NA
SQI90990.1\|2632193_2633093_+\|capsid	phage capsid protein	A0A0M3ULA3	Salmonella_phage	2.9e-81	50.0
SQI90991.1\|2633142_2633334_+	Uncharacterised protein	B9A7B6	Serratia_phage	1.5e-11	63.3
SQI90992.1\|2633404_2634010_+\|terminase	phage terminase	A0A0A7NPX9	Enterobacteria_phage	1.0e-42	61.9
SQI90993.1\|2634113_2634629_+\|capsid	capsid completion protein	A0A0A7NPU2	Enterobacteria_phage	1.8e-40	50.0
SQI90994.1\|2634628_2634985_+\|tail	phage tail protein X	A0A0A7NV57	Enterobacteria_phage	1.4e-10	67.4
SQI90995.1\|2635102_2635612_+	lysozyme	Q1I0Z1	Pasteurella_virus	1.4e-27	41.3
SQI90996.1\|2635850_2636171_+	Uncharacterised protein	NA	NA	NA	NA
SQI90997.1\|2636272_2636641_+\|tail	phage tail completion protein R	A0A0A7NPU6	Enterobacteria_phage	1.4e-34	60.0
SQI90998.1\|2636637_2637108_+\|tail	phage tail completion protein	A0A0A7NV60	Enterobacteria_phage	6.8e-34	49.0
SQI90999.1\|2637064_2637274_+\|tail	putative prophage, tail completion protein	A0A0A7NV60	Enterobacteria_phage	2.9e-13	51.5
SQI91000.1\|2637270_2637858_+\|plate	baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.5e-59	60.0
SQI91001.1\|2637854_2638205_+\|plate	phage baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	2.7e-27	55.7
SQI91002.1\|2638206_2639130_+\|plate	baseplate assembly protein J	A0A0A7NPY5	Enterobacteria_phage	7.6e-53	43.6
SQI91003.1\|2639119_2642149_+\|tail	putative prophage tail protein	D5LGZ2	Escherichia_phage	6.4e-24	40.7
SQI91004.1\|2642145_2642304_+	Uncharacterised protein	NA	NA	NA	NA
SQI91005.1\|2642346_2643444_+	Tail fiber protein	A0A0M3ULH6	Salmonella_phage	1.9e-10	29.0
SQI91006.1\|2643696_2645442_-	AIPR protein	NA	NA	NA	NA
SQI91007.1\|2645553_2646021_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	2.7e-51	62.1
SQI91008.1\|2646036_2646675_-	Uncharacterised protein	A0A0A7NRZ9	Enterobacteria_phage	2.1e-33	42.4
SQI91009.1\|2646871_2648254_-	phage protein	B9A7B3	Serratia_phage	1.7e-96	63.1
SQI91010.1\|2648303_2649014_-\|tail	phage tail tape measure protein	B9A7B3	Serratia_phage	8.7e-57	56.5
SQI91011.1\|2649158_2649476_-\|tail	phage tail protein E	A0A0A7NPZ0	Enterobacteria_phage	2.2e-12	46.8
SQI91012.1\|2649521_2650037_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.8
SQI91013.1\|2650036_2651209_-\|tail	phage tail sheath protein	A0A0A7NV69	Enterobacteria_phage	1.1e-157	70.5
SQI91014.1\|2651363_2652503_+	late control gene D protein	B9A7A9	Serratia_phage	1.8e-144	70.5
SQI91015.1\|2653061_2653301_+	putative lipoprotein	NA	NA	NA	NA
2652895:2652911	attR	NA	NA	NA	NA
SQI91016.1\|2653304_2653652_-	MarR family transcriptional regulator	NA	NA	NA	NA
SQI91017.1\|2653638_2654148_-	purine nucleoside phosphorylase	NA	NA	NA	NA
SQI91018.1\|2654310_2655003_+	CTP synthase	NA	NA	NA	NA
SQI91019.1\|2655040_2656225_-	cyanate transporter	NA	NA	NA	NA
SQI91020.1\|2656325_2657117_+	transcriptional regulator	NA	NA	NA	NA
SQI91021.1\|2657100_2657547_-	inner membrane protein	NA	NA	NA	NA
SQI91022.1\|2657631_2658168_-\|tRNA	YbaK/prolyl-tRNA synthetase-associated domain protein	NA	NA	NA	NA

DBSCAN-SWA_6

2854551 : 2902041

Klebsiella_phage(43.64%)

transposase,tRNA,capsid,tail,head,portal,integrase,protease,terminase

attL 2850863:2850877|attR 2866859:2866873

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2850863:2850877	attL	NA	NA	NA	NA
SQI91372.1\|2854551_2855844_-\|integrase,transposase	putative transposase/integrase	Q8W658	Enterobacteria_phage	4.0e-169	65.2
SQI91409.1\|2855895_2856135_-	Putative excisionase (DUF1233)	Q8W657	Enterobacteria_phage	6.5e-33	82.1
SQI91412.1\|2856142_2856289_-	Uncharacterised protein	H6WZF8	Escherichia_phage	9.2e-14	75.0
SQI91417.1\|2856360_2856663_-	Uncharacterised protein	A0A1B5FPC7	Escherichia_phage	6.6e-14	71.4
SQI91421.1\|2856659_2856884_-	Uncharacterised protein	A0A286S2B3	Klebsiella_phage	3.6e-25	79.7
SQI91425.1\|2856880_2857006_-	Uncharacterised protein	NA	NA	NA	NA
SQI91429.1\|2856989_2857427_-	Uncharacterised protein	NA	NA	NA	NA
SQI91433.1\|2857416_2858121_-	DNA-binding protein Roi	A0A286S260	Klebsiella_phage	6.3e-108	87.3
SQI91437.1\|2858129_2858711_-	2-polyprenylphenol hydroxylase related flavodoxin oxidoreductase	A0A286S1S7	Klebsiella_phage	2.3e-87	80.3
SQI91441.1\|2858691_2859123_-	Uncharacterised protein	A0A286S1S2	Klebsiella_phage	1.7e-71	93.6
SQI91445.1\|2859207_2859564_-	Uncharacterised protein	A0A286SGR4	Klebsiella_phage	2.5e-36	89.3
SQI91449.1\|2859556_2859922_-	Uncharacterised protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
SQI91453.1\|2860091_2860280_-	Uncharacterised protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
SQI91457.1\|2860272_2860587_-	Uncharacterised protein	A0A286S1T9	Klebsiella_phage	1.3e-49	99.0
SQI91460.1\|2860667_2861006_+	Uncharacterised protein	NA	NA	NA	NA
SQI91463.1\|2861312_2861480_+	Uncharacterised protein	NA	NA	NA	NA
SQI91466.1\|2861523_2861745_+	helix-turn-helix domain-containing protein	A0A286S2C1	Klebsiella_phage	8.7e-32	98.6
SQI91469.1\|2861719_2862013_+	Uncharacterised protein	A0A286S2B5	Klebsiella_phage	4.1e-37	95.1
SQI91470.1\|2862319_2863972_+	putative helicase	A0A286N2P9	Klebsiella_phage	1.7e-273	80.8
SQI91473.1\|2863973_2864936_+	putative phage DNA primase	A0A286N2Q0	Klebsiella_phage	4.5e-181	97.5
SQI91476.1\|2864932_2865715_+	antitermination protein	A0A286N2Q2	Klebsiella_phage	4.1e-132	88.1
SQI91479.1\|2866001_2866499_-	Uncharacterised protein	A0A077K9U2	Edwardsiella_phage	3.6e-33	50.3
SQI91482.1\|2866595_2866799_-	Uncharacterised protein	NA	NA	NA	NA
SQI91483.1\|2867408_2867720_+	drug/metabolite transporter (DMT) superfamily permease	A0A286N2Q5	Klebsiella_phage	2.5e-48	99.0
2866859:2866873	attR	NA	NA	NA	NA
SQI91484.1\|2867716_2868259_+	Predicted lysozyme (DUF847)	A0A286N2Q6	Klebsiella_phage	6.8e-78	77.5
SQI91485.1\|2868261_2868600_+	Uncharacterised protein	A0A286N2Q7	Klebsiella_phage	5.8e-43	83.9
SQI91486.1\|2868596_2868872_+	Uncharacterised protein	NA	NA	NA	NA
SQI91487.1\|2868816_2869014_+	Uncharacterised protein	A0A286SGR9	Klebsiella_phage	1.6e-21	86.0
SQI91493.1\|2869714_2869915_+	Uncharacterised protein	A0A1L6Z528	Klebsiella_phage	7.6e-19	73.3
SQI91495.1\|2869979_2870225_+	Protein of uncharacterised function (DUF2560)	A0A286N2R1	Klebsiella_phage	8.8e-17	58.0
SQI91496.1\|2870386_2870716_+	Uncharacterised protein	NA	NA	NA	NA
SQI91497.1\|2870737_2871100_+	HNH endonuclease	K7P7P4	Enterobacteria_phage	3.4e-49	76.1
SQI91499.1\|2871283_2871847_+	NUMOD4 motif	A0A0A0RV67	Bacillus_phage	9.1e-09	25.9
SQI91502.1\|2871935_2872400_+\|terminase	phage terminase small subunit	Q9B019	Phage_GMSE-1	3.7e-48	61.4
SQI91505.1\|2872353_2874090_+\|terminase	phage terminase large subunit	A0A0U2C138	Paracoccus_phage	4.0e-140	45.2
SQI91507.1\|2874089_2875364_+\|portal	phage portal protein	Q77W97	Enterobacteria_phage	2.4e-214	84.7
SQI91508.1\|2875381_2876062_+\|head,protease	phage prohead protease	K7PKL4	Enterobacterial_phage	9.7e-98	78.9
SQI91509.1\|2876063_2877230_+\|capsid	phage major capsid protein	F1C582	Cronobacter_phage	1.1e-184	85.1
SQI91510.1\|2877261_2877588_+\|head,tail	Phage gp6-like head-tail connector protein	NA	NA	NA	NA
SQI91511.1\|2877587_2877926_+\|head,tail	head-tail adaptor protein	K7P7L2	Enterobacteria_phage	4.0e-36	65.2
SQI91523.1\|2877922_2878372_+	phage protein, HK97 gp10 family	Q9MCS9	Enterobacteria_phage	1.0e-63	83.2
SQI91525.1\|2878368_2878716_+	Protein of uncharacterised function (DUF3168)	K7PKL6	Enterobacterial_phage	1.4e-31	61.1
SQI91527.1\|2878772_2879483_+\|tail	tail protein	K7PHL2	Enterobacterial_phage	1.1e-83	68.2
SQI91529.1\|2879513_2879918_+\|tail	phage tail assembly chaperone	Q9MCS5	Enterobacteria_phage	2.5e-32	56.5
SQI91531.1\|2879920_2880226_+\|tail	phage tail protein	Q9MCS5	Enterobacteria_phage	9.5e-29	65.0
SQI91533.1\|2880276_2880462_+	Uncharacterised protein	K7PH36	Enterobacterial_phage	1.9e-19	77.0
SQI91535.1\|2880503_2881628_+\|tail	tail length tape measure protein	K7P7L6	Enterobacteria_phage	6.3e-126	82.6
SQI91537.1\|2881674_2882769_+\|tail	tail length tape measure protein	Q9MCS3	Enterobacteria_phage	8.8e-117	69.4
SQI91539.1\|2882854_2883862_+\|tail	tail length tape measure protein	A0A2H4JHR1	uncultured_Caudovirales_phage	1.2e-22	29.2
SQI91541.1\|2883882_2884356_+	membrane protein	A0A286S298	Klebsiella_phage	6.4e-56	62.7
SQI91543.1\|2884342_2884819_+	ArsR family transcriptional regulator	A0A286S2B1	Klebsiella_phage	1.1e-50	65.8
SQI91544.1\|2884831_2885212_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.1e-61	84.9
SQI91546.1\|2885208_2888286_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	61.6
SQI91548.1\|2888364_2891331_+	flagellar biosynthesis, cell-distal portion of basal-body rod	A0A286S1P0	Klebsiella_phage	8.1e-40	72.0
SQI91550.1\|2891340_2892069_+	Uncharacterised protein	NA	NA	NA	NA
SQI91552.1\|2892187_2892505_+	Error-prone repair protein UmuD	K7PGV5	Enterobacterial_phage	2.4e-22	50.0
SQI91554.1\|2893654_2894638_+	zinc transporter	NA	NA	NA	NA
SQI91556.1\|2895106_2896210_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.1e-33	31.6
SQI91558.1\|2896206_2896497_+	ATP-dependent RNA helicase DbpA	NA	NA	NA	NA
SQI91560.1\|2896541_2897255_-\|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	A0A0U2S5Z2	Escherichia_phage	6.8e-102	95.6
SQI91562.1\|2897196_2897478_-\|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	A0A0U2S5Z2	Escherichia_phage	1.1e-23	87.5
SQI91564.1\|2898431_2899370_+\|protease	protease VII (Omptin)	NA	NA	NA	NA
SQI91566.1\|2899576_2899867_-	Bor family protein	C6ZCX3	Enterobacteria_phage	1.4e-29	63.9
SQI91568.1\|2900052_2900487_-	Universal stress protein F	A0A1W6JNV4	Morganella_phage	7.2e-30	51.4
SQI91570.1\|2900600_2900783_-	KTSC domain protein	NA	NA	NA	NA
SQI91572.1\|2900932_2901412_-	outer membrane protein N	Q1MVN1	Enterobacteria_phage	5.3e-42	55.8
SQI91574.1\|2901374_2901890_-	outer membrane protein N	Q1MVN1	Enterobacteria_phage	2.9e-46	68.3
SQI91576.1\|2901837_2902041_-	outer membrane protein N	Q1MVN1	Enterobacteria_phage	5.8e-14	62.1

DBSCAN-SWA_7

2906402 : 2911956

Enterobacterial_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI91584.1\|2906402_2907104_+	phage repressor	K7PKK1	Enterobacteria_phage	5.1e-33	40.0
SQI91586.1\|2907565_2907928_+	phage anti-termination protein N	C6ZR44	Salmonella_phage	1.5e-28	55.8
SQI91588.1\|2908004_2908397_+	prophage membrane protein	K7PHB9	Enterobacterial_phage	7.9e-36	67.8
SQI91590.1\|2908386_2908659_+	membrane protein	K7PKN9	Enterobacterial_phage	1.2e-17	56.6
SQI91592.1\|2908666_2909209_+	Predicted lysozyme (DUF847)	A0A0U2I1S0	Escherichia_phage	1.9e-67	64.0
SQI91594.1\|2909438_2909804_+	Uncharacterised protein	NA	NA	NA	NA
SQI91596.1\|2910131_2910404_+	lipoprotein	NA	NA	NA	NA
SQI91598.1\|2910400_2910841_-	Heat shock protein hslJ	NA	NA	NA	NA
SQI91600.1\|2910966_2911956_-	D-lactate dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	1.9e-70	45.7

DBSCAN-SWA_8

3595678 : 3637068

Brazilian_cedratvirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI94143.1\|3595678_3596665_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI94144.1\|3596844_3597330_-	Thiol-disulfide oxidoreductase resA	NA	NA	NA	NA
SQI94145.1\|3597316_3598012_-	metabolite ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	5.0e-17	32.9
SQI94146.1\|3598016_3599147_-	outer membrane-specific lipoprotein transporter subunit LolE	NA	NA	NA	NA
SQI94147.1\|3599136_3600420_-	macrolide export ATP-binding/permease MacB	NA	NA	NA	NA
SQI94148.1\|3600422_3601802_-	Predicted membrane protein	NA	NA	NA	NA
SQI94149.1\|3602064_3602592_-	Pathogen-specific membrane antigen	NA	NA	NA	NA
SQI94150.1\|3602619_3604494_-	Ferrous iron transport permease EfeU	NA	NA	NA	NA
SQI94151.1\|3604811_3605618_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
SQI94152.1\|3605885_3606968_+	malate dehydrogenase	NA	NA	NA	NA
SQI94153.1\|3607205_3608168_+	formate dehydrogenase H, selenopolypeptide subunit	NA	NA	NA	NA
SQI94154.1\|3608121_3609357_+	formate dehydrogenase H, selenopolypeptide subunit	NA	NA	NA	NA
SQI94155.1\|3609375_3609903_+	Uncharacterised protein	NA	NA	NA	NA
SQI94156.1\|3610073_3610835_-\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI94157.1\|3610831_3611098_-\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI94158.1\|3611253_3612405_-	N-acyl-L-amino acid amidohydrolase	NA	NA	NA	NA
SQI94159.1\|3612687_3613893_+	transporter	NA	NA	NA	NA
SQI94160.1\|3613993_3614716_-	histidine ABC transporter ATP-binding protein	NA	NA	NA	NA
SQI94161.1\|3614699_3615467_-	Amino acid ABC transporter	NA	NA	NA	NA
SQI94162.1\|3615531_3616302_-	glutamine ABC transporter	NA	NA	NA	NA
SQI94163.1\|3616397_3617297_-	RpiR family transcriptional regulator	NA	NA	NA	NA
SQI94164.1\|3617293_3618241_-	iron compound-binding protein of ABC transporter family	NA	NA	NA	NA
SQI94171.1\|3618257_3618428_-	permease of ferrichrome ABC transporter	NA	NA	NA	NA
SQI94172.1\|3618428_3619310_-	permease of ferrichrome ABC transporter	NA	NA	NA	NA
SQI94173.1\|3619306_3620347_-	iron compound permease protein of ABC transporter family	NA	NA	NA	NA
SQI94174.1\|3620327_3621149_-	transporter	G9BWD6	Planktothrix_phage	4.3e-15	30.0
SQI94175.1\|3621707_3622307_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
SQI94176.1\|3622330_3623731_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
SQI94177.1\|3623988_3624777_-	alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter	G3M9Y6	Bacillus_virus	7.2e-28	33.8
SQI94178.1\|3624770_3625766_-	alkanesulfonates transport system permease protein	NA	NA	NA	NA
SQI94179.1\|3625746_3626784_-	nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein	NA	NA	NA	NA
SQI94180.1\|3626780_3627755_-	ABC-type nitrate/sulfonate/bicarbonate transport system protein	NA	NA	NA	NA
SQI94181.1\|3627766_3629905_-	butyryl-CoA dehydrogenase	NA	NA	NA	NA
SQI94182.1\|3630141_3631035_-	putative LysR family regulatory protein	NA	NA	NA	NA
SQI94183.1\|3631142_3631739_+	cysteine dioxygenase	NA	NA	NA	NA
SQI94184.1\|3631740_3632592_+	Rhodanese-related sulfurtransferase	NA	NA	NA	NA
SQI94185.1\|3632707_3633322_+	Rhodanese-related sulfurtransferase	NA	NA	NA	NA
SQI94186.1\|3633387_3634200_-	periplasmic or exported protein	NA	NA	NA	NA
SQI94187.1\|3634192_3634405_-	periplasmic or exported protein	NA	NA	NA	NA
SQI94188.1\|3635109_3635856_-	membrane protein	NA	NA	NA	NA
SQI94189.1\|3636130_3636487_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI94190.1\|3636515_3636695_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI94191.1\|3636642_3637068_+\|transposase	transposase, IS110 family	NA	NA	NA	NA

DBSCAN-SWA_9

4133987 : 4167618

Planktothrix_phage(28.57%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI95628.1\|4133987_4135349_+\|protease	protease	Q6DW11	Phage_TP	3.6e-200	91.8
SQI95629.1\|4135592_4136375_+	transcription regulator	A0A1V0SBJ0	Catovirus	1.4e-15	30.2
SQI95631.1\|4136487_4136958_-	Uncharacterised protein	NA	NA	NA	NA
SQI95632.1\|4136944_4137754_-	transcriptional regulator CadC	NA	NA	NA	NA
SQI95634.1\|4138172_4138313_-	dipeptide transport ATP-binding protein DppD	NA	NA	NA	NA
SQI95635.1\|4138290_4138947_-	dipeptide transport ATP-binding protein DppD	G9BWD6	Planktothrix_phage	6.6e-27	40.1
SQI95637.1\|4138957_4139821_-	putative dipeptide ABC transport system ATP-binding component	G9BWD6	Planktothrix_phage	7.4e-10	27.5
SQI95638.1\|4139792_4140698_-	dipeptide transport system permease DppC	NA	NA	NA	NA
SQI95639.1\|4140694_4141732_-	dipeptide transport system permease DppB	NA	NA	NA	NA
SQI95640.1\|4141728_4143300_-	putative dipeptide ABC transport system periplasmic binding component	NA	NA	NA	NA
SQI95642.1\|4143470_4144625_-	putative mandelate racemase / muconate lactonizing enzyme	NA	NA	NA	NA
SQI95644.1\|4144923_4145229_-	2-deoxyglucose-6-phosphate hydrolase YniC	NA	NA	NA	NA
SQI95645.1\|4145194_4145587_-	2-deoxyglucose-6-phosphate hydrolase YniC	NA	NA	NA	NA
SQI95647.1\|4145635_4146913_-	ribitol/Xylitol/Arabitol transporter	NA	NA	NA	NA
SQI95648.1\|4146982_4148446_-	Xylulose kinase	NA	NA	NA	NA
SQI95649.1\|4148455_4149679_-	D-arabinitol dehydrogenase	H8ZJP8	Ostreococcus_tauri_virus	1.8e-33	31.2
SQI95651.1\|4150028_4150970_+	putative SorC-family transcriptional regulator	NA	NA	NA	NA
SQI95652.1\|4150992_4151442_-	ribitol operon repressor	NA	NA	NA	NA
SQI95654.1\|4151506_4151995_-	ribitol operon repressor	NA	NA	NA	NA
SQI95655.1\|4152252_4152456_+	ribitol 2-dehydrogenase	NA	NA	NA	NA
SQI95656.1\|4152427_4152979_+	ribitol 2-dehydrogenase	NA	NA	NA	NA
SQI95658.1\|4153035_4154643_+	D-ribulokinase	NA	NA	NA	NA
SQI95660.1\|4154784_4155750_-	Fructose-bisphosphate aldolase class I	NA	NA	NA	NA
SQI95661.1\|4155898_4156699_-	phosphomethylpyrimidine kinase	NA	NA	NA	NA
SQI95663.1\|4156695_4157379_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
SQI95664.1\|4157834_4158110_+	hydrolase	NA	NA	NA	NA
SQI95665.1\|4158051_4158477_+	hydrolase	A0A2P0VMX1	Tetraselmis_virus	6.6e-36	59.8
SQI95667.1\|4158677_4159814_+	hydrolase	A0A2P0VMX1	Tetraselmis_virus	8.9e-88	43.4
SQI95668.1\|4159872_4160808_-	LysR family transcriptional regulator YfeR	NA	NA	NA	NA
SQI95670.1\|4160907_4161594_+	putative amidohydrolase	NA	NA	NA	NA
SQI95672.1\|4161538_4162720_+	putative amidohydrolase	NA	NA	NA	NA
SQI95674.1\|4162722_4164066_+	xanthine/uracil/thiamine/ascorbate permease family protein	NA	NA	NA	NA
SQI95675.1\|4164379_4165402_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI95677.1\|4166064_4166490_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI95679.1\|4166455_4166887_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI95680.1\|4166864_4167038_+\|transposase	transposase, IS110 family	NA	NA	NA	NA
SQI95682.1\|4167528_4167618_+\|transposase	transposase, IS110 family	NA	NA	NA	NA

DBSCAN-SWA_10

4193402 : 4201034

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI95719.1\|4193402_4194539_+	Mg-chelatase subunit ChlD	Q9EYF7	Enterobacteria_phage	4.4e-143	85.3
SQI95720.1\|4194535_4195903_+	SWIM zinc finger	Q9EYF6	Enterobacteria_phage	2.1e-160	64.5
SQI95722.1\|4195856_4196543_+	Uncharacterised protein	Q9EYF6	Enterobacteria_phage	1.2e-68	61.6
SQI95723.1\|4196555_4197017_+	169 kd lipoprotein	NA	NA	NA	NA
SQI95724.1\|4197141_4197450_-	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	8.4e-41	86.3
SQI95726.1\|4197397_4197610_-	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	1.7e-16	66.7
SQI95727.1\|4197663_4198383_-	response regulatory protein yehT	NA	NA	NA	NA
SQI95729.1\|4198376_4200065_-	autolysin sensor kinase	Q9EYF3	Enterobacteria_phage	4.6e-258	84.3
SQI95730.1\|4200275_4201034_+	HTH-type transcriptional regulator mlrA	Q9EYF2	Enterobacteria_phage	9.5e-78	69.8

DBSCAN-SWA_11

4719570 : 4724863

Corynebacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI97353.1\|4719570_4719816_+	glutaredoxin-like protein NrdH	A0A0E3T8B5	Gordonia_phage	8.0e-10	35.8
SQI97354.1\|4719812_4720223_+	ribonucleotide reduction protein NrdI	NA	NA	NA	NA
SQI97355.1\|4720195_4720549_+	ribonucleotide reductase of class Ib	A0A096XT50	Enterococcus_phage	1.1e-15	45.7
SQI97356.1\|4720589_4721399_+	ribonucleotide reductase of class Ib	A7IYE5	Corynebacterium_phage	3.5e-86	66.5
SQI97357.1\|4721346_4722342_+	ribonucleotide reductase of class Ib	A0A2H4P9B7	Corynebacterium_phage	1.4e-84	50.9
SQI97358.1\|4722352_4723315_+	ribonucleotide reductase of class Ib	A0A0M4S3B4	Mycobacterium_phage	1.5e-131	71.2
SQI97359.1\|4723660_4724863_+	L-proline glycine betaine ABC transport system permease ProV	G3M9Y6	Bacillus_virus	1.1e-27	38.7

DBSCAN-SWA_12

5083935 : 5089308

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI97932.1\|5083935_5084226_+	Nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	2.6e-15	48.4
SQI97933.1\|5084209_5084377_+	Uncharacterised protein	A0A2P0ZL88	Lactobacillus_phage	6.8e-05	46.8
SQI97934.1\|5084435_5084948_-	putative kinase	NA	NA	NA	NA
SQI97935.1\|5085162_5086077_+	MdtM family protein	NA	NA	NA	NA
SQI97936.1\|5086081_5086423_+	MdtM family protein	NA	NA	NA	NA
SQI97937.1\|5086599_5086965_+	putative phosphinothricin N-acetyltransferase	NA	NA	NA	NA
SQI97938.1\|5086945_5087149_+	putative phosphinothricin N-acetyltransferase	NA	NA	NA	NA
SQI97939.1\|5087220_5087598_-	Arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.8e-46	73.4
SQI97940.1\|5087611_5088121_-	Arsenic efflux pump protein	A0A2H4J144	uncultured_Caudovirales_phage	1.8e-64	72.9
SQI97941.1\|5088158_5088905_-	Arsenic efflux pump protein	A0A2H4J144	uncultured_Caudovirales_phage	8.2e-90	74.1
SQI97942.1\|5088957_5089308_-	Arsenical resistance operon repressor	A0A2H4J145	uncultured_Caudovirales_phage	1.6e-24	48.7

DBSCAN-SWA_13

5290444 : 5297332

Moraxella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI98329.1\|5290444_5290612_-	YgjD/Kae1/Qri7 family protein	A0A0R6PI74	Moraxella_phage	1.2e-06	48.1
SQI98330.1\|5290571_5291459_-	YgjD/Kae1/Qri7 family protein	A0A0R6PI74	Moraxella_phage	7.2e-93	61.1
SQI98331.1\|5291696_5291912_+	30S ribosomal protein S21	NA	NA	NA	NA
SQI98332.1\|5292145_5293888_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.4e-70	36.9
SQI98333.1\|5294037_5295882_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
SQI98334.1\|5295968_5296493_+\|transposase	transposase	A0A1B1P776	Bacillus_phage	5.3e-11	30.5
SQI98335.1\|5296546_5297332_+\|transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	6.0e-75	68.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483483

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection