CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483487	Fusobacterium ulcerans strain NCTC12112 genome assembly, chromosome: 1	7 crisprs	WYL,DinG,DEDDh,cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6,cas13c,csm6	3	28	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483487_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483487_1

526136-526209

Orphan

Consensus_repeat	Method
AAAATATTATTAAAACGTTTTTAATAAT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of LS483487_1

>merge|LS483487|1|526136-526209|CRISPRCasFinder
AAAATATTATTAAAACGTTTTTAATAATTAAGAAAGGTTTTCTCTTAATTTATTTTTAAAATATTATTAAAATG

>LS483487|1|1|526136-526209|CRISPRCasFinder
AAAATATTATTAAAACGTTTTTAATAAT	TAAGAAAGGTTTTCTCTT
AATTTATTTTTAAAATATTATTAAAATG

Protein	Signature genes	Signature genes Name	Protein_function
LS483487.1\|SQJ00139.1\|533081_533498_-\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|334450
LS483487.1\|SQJ00133.1\|524942_525902_+\|Glyoxylate/hydroxypyruvate-reductase-B	unknown	unknown	gnl\|CDD\|240650
LS483487.1\|SQJ00129.1\|520732_521017_+\|DNA-binding-protein-HU	unknown	unknown	gnl\|CDD\|365952
LS483487.1\|SQJ00130.1\|521331_521976_+\|Uncharacterized-HTH-type-transcriptional-regulator-ydfH	unknown	unknown	gnl\|CDD\|224715
LS483487.1\|SQJ00140.1\|533613_534540_+\|HTH-domain	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
LS483487.1\|SQJ00143.1\|536358_537543_-\|N-formyl-4-amino-5-aminomethyl-2--methylpyrimidinedeformylase	unknown	unknown	gnl\|CDD\|183836
LS483487.1\|SQJ00128.1\|520547_520736_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ00141.1\|534593_534971_-\|Enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|129116
LS483487.1\|SQJ00126.1\|519732_520146_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ00138.1\|532612_533023_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ00125.1\|519369_519696_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ00137.1\|531300_532566_+\|Imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
LS483487.1\|SQJ00127.1\|520154_520517_+\|Adhesion-protein-FadA	unknown	unknown	gnl\|CDD\|370466
LS483487.1\|SQJ00136.1\|529244_531272_+\|Urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
LS483487.1\|SQJ00132.1\|523066_524953_+\|Neu5Ac-permease	unknown	unknown	gnl\|CDD\|273983
LS483487.1\|SQJ00142.1\|534990_536328_-\|D-phenylhydantoinase	unknown	unknown	gnl\|CDD\|236240
LS483487.1\|SQJ00131.1\|522068_523049_+\|TRAP-transporter-solute-receptor,-TAXI-family	unknown	unknown	gnl\|CDD\|270238
LS483487.1\|SQJ00124.1\|509293_519313_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380182
LS483487.1\|SQJ00135.1\|527696_529232_+\|Histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
LS483487.1\|SQJ00134.1\|526362_527661_+\|H+/gluconate-symporter-and-related-permeases	unknown	unknown	gnl\|CDD\|224967

Protein	Function_ID	Function_description	E-value
LS483487.1\|SQJ00139.1\|533081_533498_-\|Uncharacterized-conserved-protein	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	2.76201e-06
LS483487.1\|SQJ00129.1\|520732_521017_+\|DNA-binding-protein-HU	gnl\|CDD\|365952	pfam00216, Bac_DNA_binding, Bacterial DNA-binding protein.	1.02816e-10
LS483487.1\|SQJ00130.1\|521331_521976_+\|Uncharacterized-HTH-type-transcriptional-regulator-ydfH	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	9.26721e-34
LS483487.1\|SQJ00140.1\|533613_534540_+\|HTH-domain	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	1.00423e-63
LS483487.1\|SQJ00143.1\|536358_537543_-\|N-formyl-4-amino-5-aminomethyl-2--methylpyrimidinedeformylase	gnl\|CDD\|183836	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase.	0
LS483487.1\|SQJ00141.1\|534593_534971_-\|Enamine/imine-deaminase	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	7.36465e-65
LS483487.1\|SQJ00133.1\|524942_525902_+\|Glyoxylate/hydroxypyruvate-reductase-B	gnl\|CDD\|240650	cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	2.71137e-142
LS483487.1\|SQJ00137.1\|531300_532566_+\|Imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
LS483487.1\|SQJ00127.1\|520154_520517_+\|Adhesion-protein-FadA	gnl\|CDD\|370466	pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.	1.86725e-10
LS483487.1\|SQJ00136.1\|529244_531272_+\|Urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
LS483487.1\|SQJ00132.1\|523066_524953_+\|Neu5Ac-permease	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	2.51791e-179
LS483487.1\|SQJ00142.1\|534990_536328_-\|D-phenylhydantoinase	gnl\|CDD\|236240	PRK08323, PRK08323, phenylhydantoinase; Validated.	3.30704e-173
LS483487.1\|SQJ00131.1\|522068_523049_+\|TRAP-transporter-solute-receptor,-TAXI-family	gnl\|CDD\|270238	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This group includes Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family and closely related proteins. TRAP transporters are ubiquitous in prokaryotes, but absent from eukaryotes. They are comprised of an SBP (substrate-binding protein) of the DctP or TAXI families and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function. The substrate-binding domain of TAXI proteins belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and tworeceptor cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.94824e-101
LS483487.1\|SQJ00124.1\|509293_519313_+\|Uncharacterised-protein	gnl\|CDD\|380182	NF033175, fuso_auto_Nterm, autotransporter-associated N-terminal domain-containing protein. This domain typically is found in the genus Fusobacterium, in N-terminal regions of large proteins that are recognized as autotransporter proteins by C-terminal regions matching Pfam model PF03797. In paralogous families of such proteins, the N-terminal and C-terminal regions are fairly well-conserved, but the repetitive central region is poorly conserved in both length and sequence.	1.35861e-37
LS483487.1\|SQJ00135.1\|527696_529232_+\|Histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
LS483487.1\|SQJ00134.1\|526362_527661_+\|H+/gluconate-symporter-and-related-permeases	gnl\|CDD\|224967	COG2056, COG2056, Predicted permease [General function prediction only].	0

>LS483487.1|SQJ00133.1|524942_525902_+|Glyoxylate/hydroxypyruvate-reductase-B
MSHKVLIPQAVAKEGVELLKSYGFEIKHGSGASEEDLIKDVADCDAILLRTAPCTEAVLKAGKNLKIVARHGAGYNNVDLEAAAKLGIWATNAPDSTTNTVAEFVLGAILAVSKRIFLMNKKIKEGDFFFKNNHKGMDLTGKKLGVVGFGRIGRKVAYKAFYGLGMEILAYDPFLTKENCPDYVTICDWETIFKESDIISLHMPLIKENIGCVGKKEFTNMKKSAHFINCARGEVVNEKELIEALKTEEIAGAFLDVFEQEPPLEDNPLLSMDNVIVTPHMASNTEECMILMAVQAASEIVKVLSNEKPCWPVNNPVGK
>LS483487.1|SQJ00132.1|523066_524953_+|Neu5Ac-permease
MEGKNKNSQLSKILLFIIGLALALFHIYTSYFGALPSYQHRVVHLALSMMLVPLCYNLFNIKNEKIKNVFSIGIIAVVSVIGLYSYSIADTMWKSSGTMSGLEIILATILLILLLSFTWKTVGAAMPIIAILCILYALFGPNLPRSIAHRGYTWVRITEVLFKGTNGIFNTPLGVSSIYVSIFVIFAGVLEASGAGDIFIRLTQALLGGFRGGPAKVAVVASSLFGTISGSAVANVVGTGSFTIPLMKKSGFDSEFSGAVETAASSGGQLMPPVMGAAAFIMADYIGSYQEVLTAAIIPAILFYIALFIMIDLEALKKDLKGQSKDELPNFMEELKKGWLLLMPLVLLVFLLVGVRYSAQKSAFFSIIFLVVIMLVYPGKKRSVSEILHLIASSSKGMVSVALTTGTAGIIVGMLMLTGIGYKLSSLLISLSQGNVMLLLILTMVTSVILGMGMPTSAAYVLLATLIVPALENLGIAKIAAHFFVFYFGIMANVTPPVAVAAYTAAGIAKGDAMKTGFVAWRLSLAGFLMPFMFCMNPALLGKGTNGEIILAIMSALIGAYGLATAVQRYFKGNLSWPKTIVVLLGSVSTMMPGIKSDIFGLICLGSIYAIQIIKSKKSYDEGEVNVA
>LS483487.1|SQJ00131.1|522068_523049_+|TRAP-transporter-solute-receptor,-TAXI-family
MKNFKISKVIGSFILLLVLGITTYAAGVRYISIATSSAGGAFSIIGTAMSDIINKNDPNVSANIEITGGSSENILLAKNKNVELAMTASDVLALALEGKGSFEGKKIDKDDLRGVMGGHMTTLQVYTLRDGKIKSFKDLKGKKIAVGPAGSVAGDAMKTIMDAYGYEINKDWKPEYLSHGDGAEALTDGNVDAVCIMSTLPASPVTTAAASKPIRLLELEKEYFDKIMTECPYYIPAKIDADVYNGQDEKVEYTFGSASILITYKDMPEEDIYNMAKALFENNELLVAAYPQCNEWNIENATRGLEGLVEMHPGVIKYLKEKGVMN
>LS483487.1|SQJ00130.1|521331_521976_+|Uncharacterized-HTH-type-transcriptional-regulator-ydfH
MLEENFQTASDIAYRIISQKILDGEFSPGMKLSRRKMAEVTGVSVIPVIEALKKLEENYLVESKPQWGSYVIVPTKEKIIENYQLREAIECQSARILSKTMTGEQREELMAIATELDTIPYTDETIFDSRNSHILFHAKLTEFTGNSLLINTLKKINMFWILCKAIGTNAPKATYPRYWHRYLVDTIAKGNPDETEKLMREHVNDSLDLIIANL
>LS483487.1|SQJ00129.1|520732_521017_+|DNA-binding-protein-HU
MKETEIIREYKEKRKLKNLKTAKEKIEAFWETLIDSLQEDERLIFKGWGTFEVKKIKERIFNNPRTKKIEKISPINKIVFKQGKILKKKFNEEI
>LS483487.1|SQJ00128.1|520547_520736_+|Uncharacterised-protein
MNTKDYRLYGCHFTKEEYGFIKRKLKKLSNRNSETKITDTQVLLELFKLALKEEKEEKGQEI
>LS483487.1|SQJ00127.1|520154_520517_+|Adhesion-protein-FadA
MKKILVGCILAVSVASYSATDVMSTLEQLELNLQQLEAEEKAMYNQRKAEAEEAERTLANQRKMYAEISEKEKKISSVKDNKFYKDQYQELAKKYGEAKKELEIDMKKQEEIINIFEAIK
>LS483487.1|SQJ00126.1|519732_520146_+|Uncharacterised-protein
MQIKLTKEETEKLGENKDGIAQLLVRKAILAEMEKKKYTEEEKKYLEEMKINIEVEFYLNSIAQKAVQIYDYELLEVYKNNSELLKDKNTVEIYPQLQQALFNKKLGEEKVKVINEIVEKYKINDVLKEYIKPEEEK
>LS483487.1|SQJ00125.1|519369_519696_+|Uncharacterised-protein
MDEKTEKRGRPLGSGNKKDVILGIRVSKEEYNIIKEGLAKLKGKYKTNKNIILYLFKKYNILEENNKKSDKMFLKIIIEEMKKKKYTKEEKEQLIKEIYKTIENKDEE
>LS483487.1|SQJ00124.1|509293_519313_+|Uncharacterised-protein
MRKNDIEKSLKRFLKRKISYSLSLLIAFMITGGISFGAGITTEEIQETKNDILTRIETEREEIKRKIAENERLIKEYNSDFVELVRKGDFYSKPLIPSTQVFFSYQYLDNGKTKDRTAKEFKETIDAVNKHYGTTSGESLLKSTGNIGKDKVLSGNGVVVDNEVFRETIEVGANIKPVEPVLPTISPNVSVNVSAPVVNLGTLPGTVNPIMPSVPSVIAPTITAPSTPGGINVNVSTPAAVAKITVTAPTAKTPAIPAEKNIEIKTPTLPQGYEPTMITLPTAPTLPVVVPVNVSSPSIAGSGANPSVQYFWWNGNNGVISQISLKSGEYIINGNSGNYSVGVTGYDAEAFPGTTPSGTKPTENKVYNVPQQFFHTLLNVPYSYYGENTKIVFNSNNAKLIDLETEGMVNGNLDNRVTEGLITSATRDRLREYQTYTGIKGEDGTELLFVNKGEIEINGTGSAYFFTTSHTNGNYRTNYLDNEGTITVNGDKSIVYMHSPDTSQSKAYIYSNGPTGKIYVDGVGASLMQWAYSNLPHNRAAFVNEGTAEIRGAEAIALYMSNNSAFNNGHAAYIKKAIDLLGDKSIGMVAQNTNIINEKNIVKFNIGNKEQTIVKGNSLTSIFTNADGTPRANDPTLVEQGIGILMDNSSTTKTAAQIEIGKYSYGGIGIFGKQGTIEILAPSGTSGEKSNITISDGEKNTGIIAKGGDVKFNGDILIKGGKDNRAAVAESGKKITITGNVTAGSNDKKIEDSVILYAKDNGTVITVENDKLNLKLSGDSTGIFATSQGKVAANRTSLTLSQPDASGNIPEPTAEVNIYVEGKKDTDGKIKGLGLYTSSGGNISAKNTYVKVKNGAVGIASVGNGSKVDLTGGIIDYEGNGYAVYTSDNGEIDLTNGEIILRGKATALELDFAGGVNPIKLQGARITVMSNDAIIANLKNAGVLNIADLESNISTNLGGVTFKNGTNGSEVFDKYKVAAIDGGTLNIDTNIDKGDTSTSSPGFYYYRRFLGQRLKISVLDNVTVNASINSAYASEYFKGQVVGLEINSSSSATGISDTQINLGQGAKIVASRLDSGSGAIGAYINYGEITLDTGSSIEVEKTLKNENGVGIYAVNGSKVTNKGNITVDGNYGIGIFGTAYRTDSSNIPVVNEFGGKAGEGELEINNAQNITLLGMGTVGIYAKNNNGSVSSEKTKVNNTGNITVGDSNTSTSVGIYGEKAEISNTGTISVGAGGVAIYATTGSKVTNLGTLKLGSDGIGIMADGTSTITATNVILGSNAGTDDSGKTGVFYKGSASGIDNKSIALNVNAENLDKGTAIYVENMNVTSSGALNVGKEGIGIFVKGNSTQTGTNTGTIDLTAGKNDAVGMYTTTANILNNTGGSINVNDTSQIGMYAEEANHKATNKGTINLNADSSTGIYVKLGAVAELDTGNSIVFNKKFSVGVFAENATVNFKDDLTFANNNENKNIYVYGKGATVGIDPGKIVTVDGMETPTTAGNKTVGIYLENAGTGSTFTSNTTGQLVVQREAVGIYSKGNNTLNVNVTATGEKTTGVFIDGGSTITGTVTAQGTSTAGAVGVYGSGGAVTIGAGGLALKTDTGKGTGMYLTDGAHAAGGKITVNNTATVDNIGVYYSKGTASGTVTNGAEVELTGNKSIGIYAADGINLVNTKNITSTGLNNNIASYVGGNSTLTSNGNITMTGTDGNIGIYTGKGSGINNGAIDLTGSIGRSSAGMVAKTDTSSDTASVENKNRITVGSNLGMYVAGNGTSSGKNTGTITATTGTGVYVNGSGNSFNGTGGTITSNAVGIYLKDTGANKITAGTLNIASGGVGVFGENAKIDFAVNVTGTGAVGVAAKSGTVISGNITTGQGSVGAYLLDGTVTFNGANITTGANSSSGTSVGVLFDNTIAGPYTMNNVSVNAKNGVGIYLGGAGMTLNHNGTVTTEGGIGIYVKNGTTLTTGESTLNISNGGTGVYIDGGIANLGTSGNLKFNFGTGGGIGVFNNGGTLNLGNNITAIGSGSLAATSNGSLISSGNLNIGEGGTGLLGTYDNGTTTLKNITNNGGTITAHTGGIGLAAIKGTSTPTAKVTINNSGIINANGISNGVNPSPSIGIFTDVADVINTGTINVGSNGIGIYSNHNGVLTSVKNDNMKMTGTDGIGVYLKGTTAGLTSNNINSTGSRNTGVVLEGVTSAIDAGTITLGNESIGVLATNGTNSLIDGTISVGASSGTKSAIGIVANGGSNVTVAGTSTITAGNGGIGVYAEGAGTIVTVADTGNITVGTDGIYMYSKGAALTFTGNITADNQIGIVADGGSVTSSGSSSITAKNGGIGAYVKNAAPAFGTTAITVQSGVAETTSAPAKYSVGIYYDSVASAGIIPTVTQTGNYTIGRVLNKSTGTVSGGISIGSSGNNQVGVMAKENSNLTVTGGISVIGGNSNIGVYGKSSAIAVNGNISVASAASLTNSSIGVFIDKGIYNGTTGDISVGNNSIGIYGKDLNGGSISQTGTVMTVSNSGVGIYGTGTGNGTENINLTMTTGITLGNNNSIGVYAKNINTSVTGDIHVGTNTSIGIVSEGNGNVTYTGDLAIANKGTGEKDTGSVGIYKLNGTGTINTLAGNWNVGNNGYGIFLKQAAGQSATINNNADMTLGTAAVGIFSSGKNTVNNTGDIIVGKTDVKGDHDNIENHLNSIGIYATGGTKVNNAGNITVNYDHSVGIYGDGAETRIQNTGTINVDGGGVGILVRDGAVAVNAVGGNIILGSTSAPDPCTAITVGMAAYSGARIENAGTITVNEGVGMLIGQGATFNNSGTIYLKNGIGIEGPGAVNNYGDIVILPGGNGTPGANVGVSKAEVGSVKIESDGTITINDKYVSIGGTLSTAGNIVVNGAYVDVTTGTPLFNANSVSGEVKLLPNFAATGNGISYEIEGFINTAMGTITGNKLTPVTSPLFIAKVTDKGSLVIAKKPYADLTIGDQFDALDKGLDNILKNSGGNGKDAEILKGLNEYLEGLPADQFERETSLKLAETRGDIYATIQGRMQDINRAFDNSFYELESSYNLTKDSSKYSVIYTDGNYKDSTLGIDDYDYKVMGVLYMKEKEGTEYGSKYGYTLGFTGSKFDFDDGGSKEDVYSLRVGAHRVKNLSEEHKVSWLSRIELGYNRHIAKRKLNLQETFENKGEYNTYSVALDNRLTKVIYTDLSRQLDVYADLDLEYGKVDDFKESAGSKGGLEVQIKDNDYLSAQAGAGVKASQRIYAGNDVSVKVTADVKYAYELGDNYDGNKARLKNGREGYYSLITPEESEGKLTGKIGLTIEKANHMGVTFEVEAADEGNRKDSSIKYGMRFNYKF
>LS483487.1|SQJ00134.1|526362_527661_+|H+/gluconate-symporter-and-related-permeases
MLLNPVILSVLTMIILCLLKLNVIFSMLAAALVAGITSGIGMPETMKILIGGMGGNSETALSYLLLGTLAVAINSTGVASIISKKIAGIVSGRKRVLLLLIAAVACFSQNLIPVHIAFIPILIPPLLKLMNKLKVDRRAMACSLTFGLKTPYVVLPVGFGLIFHTIVKDQISANGYNIELGEVWRATWILGLAMVIGLFIAIFITYKKDRDYEDLPLKGMEEVESEKMEKKHWVTLIAALTAFGIQLYTGSLPLGALAALGIMLVFKVVKWNELDNVLNDGLLIMGLIAFIMLVAAGYGRVIRETGAIETLVTGVVGICGGSKAIASLAMLTVGLFITMGIGTSFGTVPILATIYVPLTIEMGYSSAAMIVLITAASIIGDAGSPASDSTLGPTSGLNADGQHEHIRNTCMATFIHFCIPLFIAGFIGSLIF
>LS483487.1|SQJ00135.1|527696_529232_+|Histidine-ammonia-lyase
MRLVIGDRRLTLEDLINVTRKGYKVEISEGAYKKVAEARELVDRYVKEKKVSYGITTGFGKFSDTVISEEQTGLLQKNLIMSHSCGVGNPIPVDMAKGIMLLRIVNLSKGHSGVRKIVLDTLVDMLNKDVTPFIPEKGSLGASGDLAPLSHMVLVMLGMGKAYVNGELLDGAEAMKKAGVPVLEELSSKEGLALINGTQVMTSIGAHVTYDAINLMKHLDIAGALTMEALNGITCAFDHRVHEVRGHQGQIRTAENFRNILKESKCTTKQGEMRTQDPYTLRCIPQIHGASKDALEFVREKVEIEMDAVTDNPIIFCDTDDVISGGNFHGQPMALPFDFLGIAVSEMANVSERRIERLVNPHLNCGLPAFLVENGGVNSGFMIVQYSAASLVSENKVLAHPASVDSIPSSANQEDHVSMGTIAARKAGEILKNARKVIAMEILSACQGIDLKKVNKDLGLGTEKAYTAVRETVSYYDKDRVMNLDINAVEELIERNKIVENVEKVIGELKI
>LS483487.1|SQJ00136.1|529244_531272_+|Urocanate-hydratase
MINKDIYNAMTIKLTAQDIPMKMPEMDPKIRRAPKRVVHLEKDEIELALKNALRYIPEEYHEMLAPEFLNELMEHGRIYGYRFRPEGRIYGKPIDEYTGRCTEARAMQVMIDNNLDFEIALYPYELVTYGETGQVCQNWMQYRLIKKYLENLTQDQTLVVASGHPTGLFRSNPYAPRAIITNALMVGEFDDYDNWARAAAIGVANYGQMTAGGWMYIGPQGIVHGTYSTILNAARLFCEVPKDGDLTGKLFVTSGLGGMSGAQGKATVIAKGVGIVAEVDISRIHTRLEQGWVDKIARTPEEAFNMAREKQEAKVPYAIAFHGNIVDLLEYADKNNIHIDLLSDQTSCHAVYDGGYCPAGITFEERTRLLAEDRETFNKLIDETLRRHYEVIKKLTAKGVYFFDYGNSFLKAIYDIGVKEISKNGRDDKGGFIFPSYVEDILGPELFDYGYGPFRWVCLSGKKDDLLKTDHAALELVDPNRRYQDRDNYMWIKDADKNGLVVGTQARIFYQDAMSRTRVALKFNEMVRNGEIGPVMLGRDHHDVSGTDSPFRETSNIKDGSNIMADMATQCFAGNAARGMTMIALHNGGGVGIGKSINGGFGMVLDGSHRVDEILMQAMPWDVMGGVARRAWARNPHSIETVIEYNNDNKGTDHITLPYIANDDLIKKLVDGKIK
>LS483487.1|SQJ00137.1|531300_532566_+|Imidazolonepropionase
MKADLILYNIGTLVTSRELDKKDFDNGMENIEILKDAYLVVEDGKILQIGTGKVPESLKSEWTKLIDAEGKVVTPGIIDSHTHLVHYGSRENELPMKLKGVPYLEILRNGGGILSTVRATRKATRYELFDKAYEVLDRMLCFGVTTVEAKSGYGLDLENEIKQLEVNKKLDEKHPVDIISTFMGAHAIPEEYKGNSQGYMEELFKMLPIIKERKLAEFCDIFCEDEVFSIEESRKILNEAKKQGFMLKIHADEIVSLGGGELAGEVGAVSSEHLMAVSNEGIKSLKENGVIADILPATSFNLGKAYAPVRKMINEGVNVAVSTDYNPGSCPCENMQLVMQICSSQLRMTPAEIFKAVTLNGARAVKREDNIGSLEKGKKADFVIFDTDNLNYIFYNFGINHVKDVFKEGKQVVKNKHVCYK
>LS483487.1|SQJ00138.1|532612_533023_+|Uncharacterised-protein
MNKKEESKTIGSSFCFSVEYSKRIKTYYQGDDCMQIFILIISNIINLILGFILQPWLELSFGSINGKAIGSYEILEAEVEAHPALGWATVVIYVVIFLLLNILFLKWSKLKFFKYIKYNCLAFVIGFILSIGGRIF
>LS483487.1|SQJ00139.1|533081_533498_-|Uncharacterized-conserved-protein
MDLLKEFHKIMEEQSDIALATSVNDIPNVRIVSFYFCPDENILYFGTFKDEVKTKEFEKNNKVSFTTIPKESEEFARTNCGIVKKSDLPMSDFKQVICEKVPGYKEIIDNFEDKLVLYEISFKEVAITINYDEYKIAL
>LS483487.1|SQJ00140.1|533613_534540_+|HTH-domain
MKIDRLLSIVIVLLEQNKISATKLAEMFEVTTRTIYRDIETIQAAGIPIVTYTGINGGIGILEKYKIDKKFFTKEDITTLMTGLGSISSSVSNVELTKVLTKLQSLIPEEHIQEIKLKSGQIIIDLTTWSGNKKLQSNLNKIKEGLNERKYLEFHYLDGSGRSSKRKVEPYQLLWKEEKWYMNSYCTLRNDFRLFKLARISYLKVLDETFTLRKFDIKDLEMNWIEKRIINIKLLADISLKERILERCEEDRITYCDENKMIVDFPFVDDDFDYEELLSFGNRCECLEPAEVREKLIKMIRDTMKIYE
>LS483487.1|SQJ00141.1|534593_534971_-|Enamine/imine-deaminase
MKKIIHTEKAPAALGPYSQAVEANGTLYVSGQIPFVPETMTLVSDCVKAQTKQSLENIKAILEAAGYTFKDVVRAGVFIKDMNDFAAVNEVYAEYLGDVKPARACVEVARLPKDVKVEIEVIAVK
>LS483487.1|SQJ00142.1|534990_536328_-|D-phenylhydantoinase
MLLIKNGNILIGNKIEKLDILIENEKIKKIDKDISEDICSNIFDAEGKYIIPGGVDVHTHFNIDVGIISADDFYSGSAAAAFGGTTTIVDHPGFGPKGCGLDYQINKYMKDAENSNIDYSFHGVVQEVYSDIFSQMEDLKKRGINSVKIYMTYAYKMTDDDVLRMFEYAKKLDMVVCVHSEDDKGIEFLRGKFTEENKLTPIYHAESRPDFIEGCSVYKLLSYAEITGFEKLYLVHISSKESMEIIEDFRRRGVRFFVESCPQYLFLTEEKYMEENGLDYILSPPLRKKEDTEYIKKALASNRIDVIATDHCSFTLEDKSKGKNDFKLCPNGIPGVEERIPLLFNEVINGRLSVETFLKTACENPAKIFGLFPKKGILTKGSDADIVIFEKKNSKIENMHTAAKYSCYENFPLSAVIDTVILRGNIIIRNNELIMKSSGKFIKRI
>LS483487.1|SQJ00143.1|536358_537543_-|N-formyl-4-amino-5-aminomethyl-2--methylpyrimidinedeformylase
MLTNERKEQIVEVLQNLIQRRSYSGEEKEVAEYIKKLCLEVGYDTVHVDKYGNVIGSVKGKYEGPKVLMDGHIDTVPVDEEKWTKKPFAGNIEDGKLYGRGTTDMKGAVCAMLLAGAYLAQDLKKEFAGEIFIAGVVHEECFEGVAAREISKYVKPDYVIIGEASQLNLKIGQRGRGEIVVETFGKPAHSANPEKGINAVYKMMKIIENIQKLPMTHHDTLGYGILELTDVKSSPYPGASVVPDYCRATYDRRLLVGETPESVLAPIQKLLDEMAKEDETLKAKVSYARGVEKCWTGATIEGERFFPGWLFEEKDEYVQKALKALEGIGQTPTITHYNFCTNGSHYAGEAGIKTIGYGPSRENLAHTIDEYIELDSLYNVTEGYYAILKAYLTK

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Crispr_ID: LS483487_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483487_4

1516062-1517185

TypeI-B

Consensus_repeat	Method
ATTTAAAAACTTCAAAGTTACTGTTATAC	CRISPRCasFinder
ATTTAAAAACTTCAAAGTTACTGTTATAC	CRT
TAAAAACTTCAAAGTTACTGTTATAC	PILER-CR

17 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of LS483487_4

>merge|LS483487|4|1516062-1517185|CRISPRCasFinder,CRT,PILER-CR
TAAGAAAAACTTCAAAGTTACTGTTATACTCTGCATATACTCTTGTGGATCAAATGGATTTAAAAACTTCAAAGTTACTGTTATACAAAATTAGAAGTGCTGATGACCCAGCTCCTGCTGCATTTAAAAACTTCAAAGTTACTGTTATACTATATCTCAAAAACCTGTAACTTTAAAATGTTTAAGATTTAAAAACTTCAAAGTTACTGTTATACTTGGAGTAGAAACAGATGTAAATGAGCTAGATGATATTTAAAAACTTCAAAGTTACTGTTATACCAGTCTTTCCAGTTGAATGTCCTGAGGTAACAACAGATTTAAAAACTTCAAAGTTACTGTTATACTTTACCATAGCTCTATACCTACCTTTTTGTCGGTCATTTAAAAACTTCAAAGTTACTGTTATACTTAGGAATAGATATAATGCTGAATCCTGAAGCAGAAGATTTAAAAACTTCAAAGTTACTGTTATACAATTTTCACAAAGGATATCTTCCAATAGATGATTAATTTAAAAACTTCAAAGTTACTGTTATACGATATTTTGCTGCATAGTGCATAGAAAGGAGAAATAAATTTAAAAACTTCAAAGTTACTGTTATACTGGAGAAGAGAATTCAAGGGAAGTTGAAAATGATAAATTTAAAAACTTCAAAGTTACTGTTATACAAAGTCTTATTTTCCAACCTCTTTCCCCCAAAAAAGATTTAAAAACTTCAAAGTTACTGTTATACATAGTTACTTGTAAAAAAGAACTTGAAGAAAATGCTTATTTAAAAACTTCAAAGTTACTGTTATACTTTACACTGCTTTTTAAAGCAGAAGCTCCAAGAAGATTTAAAAACTTCAAAGTTACTGTTATACCCTTACAGTTAAATTTATATAGTTTATTATTTCTGATTTAAAAACTTCAAAGTTACTGTTATACAAGCAGAAGAGGTGGAAATTAAAATATCTGAAAAATATTTAAAAACTTCAAAGTTACTGTTATACTAGTAGAATATTAACTGAGTAGTTTTTAAATGCCAAATTTAAAAACTTCAAAGTTACTGTTATACTAGAAAATAATCTTACTTCACATTTTAAAAATATTATATTTAAAAACTTCAAAGTTACTGTTATAC

>LS483487|4|4|1516062-1517185|CRISPRCasFinder
TAAGAAAAACTTCAAAGTTACTGTTATAC	TCTGCATATACTCTTGTGGATCAAATGG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAAATTAGAAGTGCTGATGACCCAGCTCCTGCTGC
ATTTAAAAACTTCAAAGTTACTGTTATAC	TATATCTCAAAAACCTGTAACTTTAAAATGTTTAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTGGAGTAGAAACAGATGTAAATGAGCTAGATGAT
ATTTAAAAACTTCAAAGTTACTGTTATAC	CAGTCTTTCCAGTTGAATGTCCTGAGGTAACAACAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTTACCATAGCTCTATACCTACCTTTTTGTCGGTC
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTAGGAATAGATATAATGCTGAATCCTGAAGCAGAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AATTTTCACAAAGGATATCTTCCAATAGATGATTA
ATTTAAAAACTTCAAAGTTACTGTTATAC	GATATTTTGCTGCATAGTGCATAGAAAGGAGAAATAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	TGGAGAAGAGAATTCAAGGGAAGTTGAAAATGATAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAAGTCTTATTTTCCAACCTCTTTCCCCCAAAAAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	ATAGTTACTTGTAAAAAAGAACTTGAAGAAAATGCTT
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTTACACTGCTTTTTAAAGCAGAAGCTCCAAGAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	CCTTACAGTTAAATTTATATAGTTTATTATTTCTG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAGCAGAAGAGGTGGAAATTAAAATATCTGAAAAAT
ATTTAAAAACTTCAAAGTTACTGTTATAC	TAGTAGAATATTAACTGAGTAGTTTTTAAATGCCAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	TAGAAAATAATCTTACTTCACATTTTAAAAATATTAT
ATTTAAAAACTTCAAAGTTACTGTTATAC

>LS483487|4|1|1516062-1517185|CRT
TAAGAAAAACTTCAAAGTTACTGTTATAC	TCTGCATATACTCTTGTGGATCAAATGG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAAATTAGAAGTGCTGATGACCCAGCTCCTGCTGC
ATTTAAAAACTTCAAAGTTACTGTTATAC	TATATCTCAAAAACCTGTAACTTTAAAATGTTTAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTGGAGTAGAAACAGATGTAAATGAGCTAGATGAT
ATTTAAAAACTTCAAAGTTACTGTTATAC	CAGTCTTTCCAGTTGAATGTCCTGAGGTAACAACAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTTACCATAGCTCTATACCTACCTTTTTGTCGGTC
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTAGGAATAGATATAATGCTGAATCCTGAAGCAGAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AATTTTCACAAAGGATATCTTCCAATAGATGATTA
ATTTAAAAACTTCAAAGTTACTGTTATAC	GATATTTTGCTGCATAGTGCATAGAAAGGAGAAATAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	TGGAGAAGAGAATTCAAGGGAAGTTGAAAATGATAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAAGTCTTATTTTCCAACCTCTTTCCCCCAAAAAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	ATAGTTACTTGTAAAAAAGAACTTGAAGAAAATGCTT
ATTTAAAAACTTCAAAGTTACTGTTATAC	TTTACACTGCTTTTTAAAGCAGAAGCTCCAAGAAG
ATTTAAAAACTTCAAAGTTACTGTTATAC	CCTTACAGTTAAATTTATATAGTTTATTATTTCTG
ATTTAAAAACTTCAAAGTTACTGTTATAC	AAGCAGAAGAGGTGGAAATTAAAATATCTGAAAAAT
ATTTAAAAACTTCAAAGTTACTGTTATAC	TAGTAGAATATTAACTGAGTAGTTTTTAAATGCCAA
ATTTAAAAACTTCAAAGTTACTGTTATAC	TAGAAAATAATCTTACTTCACATTTTAAAAATATTAT
ATTTAAAAACTTCAAAGTTACTGTTATAC

>LS483487|4|1|1516066-1517185|PILER-CR
AAAAACTTCAAAGTTACTGTTATACT	CTGCATATACTCTTGTGGATCAAATGGATTT
AAAAACTTCAAAGTTACTGTTATACA	AAATTAGAAGTGCTGATGACCCAGCTCCTGCTGCATTT
AAAAACTTCAAAGTTACTGTTATACT	ATATCTCAAAAACCTGTAACTTTAAAATGTTTAAGATTT
AAAAACTTCAAAGTTACTGTTATACT	TGGAGTAGAAACAGATGTAAATGAGCTAGATGATATTT
AAAAACTTCAAAGTTACTGTTATACC	AGTCTTTCCAGTTGAATGTCCTGAGGTAACAACAGATTT
AAAAACTTCAAAGTTACTGTTATACT	TTACCATAGCTCTATACCTACCTTTTTGTCGGTCATTT
AAAAACTTCAAAGTTACTGTTATACT	TAGGAATAGATATAATGCTGAATCCTGAAGCAGAAGATTT
AAAAACTTCAAAGTTACTGTTATACA	ATTTTCACAAAGGATATCTTCCAATAGATGATTAATTT
AAAAACTTCAAAGTTACTGTTATACG	ATATTTTGCTGCATAGTGCATAGAAAGGAGAAATAAATTT
AAAAACTTCAAAGTTACTGTTATACT	GGAGAAGAGAATTCAAGGGAAGTTGAAAATGATAAATTT
AAAAACTTCAAAGTTACTGTTATACA	AAGTCTTATTTTCCAACCTCTTTCCCCCAAAAAAGATTT
AAAAACTTCAAAGTTACTGTTATACA	TAGTTACTTGTAAAAAAGAACTTGAAGAAAATGCTTATTT
AAAAACTTCAAAGTTACTGTTATACT	TTACACTGCTTTTTAAAGCAGAAGCTCCAAGAAGATTT
AAAAACTTCAAAGTTACTGTTATACC	CTTACAGTTAAATTTATATAGTTTATTATTTCTGATTT
AAAAACTTCAAAGTTACTGTTATACA	AGCAGAAGAGGTGGAAATTAAAATATCTGAAAAATATTT
AAAAACTTCAAAGTTACTGTTATACT	AGTAGAATATTAACTGAGTAGTTTTTAAATGCCAAATTT
AAAAACTTCAAAGTTACTGTTATACT	AGAAAATAATCTTACTTCACATTTTAAAAATATTATATTT
AAAAACTTCAAAGTTACTGTTATAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483487.1\|SQJ02459.1\|1519147_1521733_-\|helicase-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
LS483487.1\|SQJ02466.1\|1525248_1525944_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
LS483487.1\|SQJ02445.1\|1512420_1512858_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|179848
LS483487.1\|SQJ02463.1\|1522498_1523443_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
LS483487.1\|SQJ02444.1\|1511535_1512411_+\|Homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
LS483487.1\|SQJ02446.1\|1512942_1514436_-\|EIICBA-Glc	unknown	unknown	gnl\|CDD\|273923
LS483487.1\|SQJ02470.1\|1528454_1529108_-\|Uncharacterized-BCR,-COG1636	unknown	unknown	gnl\|CDD\|376894
LS483487.1\|SQJ02447.1\|1514642_1515761_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|378147
LS483487.1\|SQJ02439.1\|1505102_1506185_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|238879
LS483487.1\|SQJ02441.1\|1507432_1508755_-\|Aspartokinase-I/homoserine-dehydrogenase-I	unknown	unknown	gnl\|CDD\|236364
LS483487.1\|SQJ02443.1\|1510060_1511539_+\|Threonine-synthase	unknown	unknown	gnl\|CDD\|236418
LS483487.1\|SQJ02461.1\|1521740_1522496_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
LS483487.1\|SQJ02455.1\|1517640_1518642_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
LS483487.1\|SQJ02468.1\|1527846_1528458_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ02457.1\|1518651_1519134_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
LS483487.1\|SQJ02440.1\|1506400_1507420_-\|Aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
LS483487.1\|SQJ02438.1\|1501909_1504963_+\|Cation-efflux-system-protein-CzcA	unknown	unknown	gnl\|CDD\|223911
LS483487.1\|SQJ02452.1\|1517355_1517640_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LS483487.1\|SQJ02442.1\|1508773_1509946_-\|Homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
LS483487.1\|SQJ02464.1\|1523445_1525230_-\|Uncharacterised-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234

Protein	Function_ID	Function_description	E-value
LS483487.1\|SQJ02459.1\|1519147_1521733_-\|helicase-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	1.15479e-32
LS483487.1\|SQJ02466.1\|1525248_1525944_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.69572e-12
LS483487.1\|SQJ02445.1\|1512420_1512858_+\|ACT-domain-containing-protein	gnl\|CDD\|179848	PRK04435, PRK04435, ACT domain-containing protein.	2.8264e-59
LS483487.1\|SQJ02463.1\|1522498_1523443_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.3397e-47
LS483487.1\|SQJ02444.1\|1511535_1512411_+\|Homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	4.93737e-115
LS483487.1\|SQJ02446.1\|1512942_1514436_-\|EIICBA-Glc	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
LS483487.1\|SQJ02470.1\|1528454_1529108_-\|Uncharacterized-BCR,-COG1636	gnl\|CDD\|376894	pfam02677, DUF208, Uncharacterized BCR, COG1636.	5.03367e-100
LS483487.1\|SQJ02447.1\|1514642_1515761_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	1.79162e-08
LS483487.1\|SQJ02439.1\|1505102_1506185_-\|Uncharacterised-protein	gnl\|CDD\|238879	cd01841, NnaC_like, NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.	3.44007e-15
LS483487.1\|SQJ02441.1\|1507432_1508755_-\|Aspartokinase-I/homoserine-dehydrogenase-I	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
LS483487.1\|SQJ02443.1\|1510060_1511539_+\|Threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
LS483487.1\|SQJ02461.1\|1521740_1522496_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	7.66148e-49
LS483487.1\|SQJ02455.1\|1517640_1518642_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.31277e-145
LS483487.1\|SQJ02457.1\|1518651_1519134_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	9.0742e-50
LS483487.1\|SQJ02440.1\|1506400_1507420_-\|Aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	3.74264e-175
LS483487.1\|SQJ02438.1\|1501909_1504963_+\|Cation-efflux-system-protein-CzcA	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
LS483487.1\|SQJ02452.1\|1517355_1517640_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.31304e-26
LS483487.1\|SQJ02442.1\|1508773_1509946_-\|Homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	3.42303e-121
LS483487.1\|SQJ02464.1\|1523445_1525230_-\|Uncharacterised-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	1.86199e-09

>LS483487.1|SQJ02447.1|1514642_1515761_+|Transposase-and-inactivated-derivatives
MDTEKELQLQRFKIIEPFLRKEKKLKEIEEETGVSYATLKRWVNAYKKNGILGLDKKQRTDKDSYRAIDEDGVEFIEQICRESKETKISKLYSFCKEKLSSKYNISYPTFYRIVSNLDGFFNKSSSLHMKKIKKENQVYLVLEIPLYILVSEEESEHKIVPQLLISIDVATLKPINHALNYNTSSIYTLLSFIRESMLKVSVKSGKLVKPQEILVSSENINNKKILKEIYDSTSIKITEYFSENEEIRKFVSFLEEDIEKFYYQNNKILSYQNLKSFLDSYIYLDNQKYDFALKYEMIEVIPSIRELDIFLQEASRKISKSSLRFNNFIYTNNSLNTLEGKKVIVKYSPLDTEILYLFFRNQFLGTANISAG
>LS483487.1|SQJ02446.1|1512942_1514436_-|EIICBA-Glc
MKIFAEVQKIGKALMTPVAILPAAGLFLAFGNKLQFTLMEQAGQVIFSNLPLLFAIGAAIGLVGGDGVAALSAVVAILIMNTTMGIVSGAAAGIAAGDMSYAMVLGIPTLQTGVFGGLIAGIIAAVCYKKFYKTELPAFLGFFAGKRLVPIVTAVAAFVIGLAMPVIWQPVQIGLAKLSYLANETNTNVSTFIFGVIERSLIPFGLHHIFYAPFWYQFGEYTNAAGQVVNGDQAIWFAMLKDGVTNFSSATYQGAGKFLTGKFVFMMFGLPAAALAMYQEAKPANKKLVGGILFSAALTSFLTGITEPLEFSFLFVAPILYGIHCIFAGLSFMLMNMLNVRIGMTFSGGLIDYIAFGVLPGTSGFQNNWYLVIVVGLCLSVVYFFGFRFAIRKFNLMTPGREDAVIEEVSASGNEIKSDELAVGVLEALGGKDNLVSLDSCITRLRVEVKDTKTVSDKDLKKLGASGVLKVGTNGVQAIFGSKAQFICNDLKKMTGI
>LS483487.1|SQJ02445.1|1512420_1512858_+|ACT-domain-containing-protein
MKEKYLIVNKKILPDYFEKVVEARNLLTEGKVKGISDAVKMVGISRSTYYKYKDYVFLPSDNSIGRKALVSMMLEHKKGVLSEVLNYLSSVNGNIITINQNIPINEVASVVISLDISDITIPIEDIISGIEQINYVGSTKLLSLE
>LS483487.1|SQJ02444.1|1511535_1512411_+|Homoserine-kinase
MITIKVPATTANIGPGFDTLGLAFKLYSYFTFKKIEYGIRILGCEEKYQNDSNLVYTSFKKTLEILKYPVPGIEITIKSDIPVSRGLGSSAACIVGGVMGANIIAGSPLSKDEIFKICNDIEGHPDNIAPALFGGLTASLVEEGIPYTVQYNINENLYFCALVPDFRLSTAEARKVLPSEIPYKDAIYNISRIAVLLKALENGDDLLIKKSLSDTLHEKYRNILIHEYEEVKEICEKNGNTALFISGSGPTLMNIAKTKDFQWKIEYEIKNLKNSWIIRTLDIDMKGAVVL
>LS483487.1|SQJ02443.1|1510060_1511539_+|Threonine-synthase
MNSNFESTREKKIQCSASQAVIKGIANDGGLFVRRDMDSLKINISDLKNKKYTEIAEIIISKILDDYPKESIKYCVENAYDKKFSSDDITPLVKVGNDYVLELFHGPTSAFKDMALSILPYLSTEALKLNEIKEKILILTATSGDTGKAALEGFKNIDGIKILVFFPNDGVSKVQEKQMVSQEGNNTYVYAINGNFDDAQSEVKKIFTDEEIREKLKKKNYSLSSANSINIGRLVPQIVYYFYSYMKLVEMNEITLGEKVNFTVPTGNFGDILAGYYAELMGLPVNKLICASNENNVLYDFIKTGTYDRNRPFHKTLSPSMDILISSNLERLIYHLSGSNNEYIKSLMDKLKSEGKYSVSDEIKNSIDNLFYAGYTKGLQTSETIKKVYGEYNYLLDTHTAVAYSVMEEFKQKDPHHKNIVLATASPYKFSKAVYESLFGENNADEFKIMELLNEKTRVPIPENLKTLKDKKDIHTSVINKEDMKNCFEVIL
>LS483487.1|SQJ02442.1|1508773_1509946_-|Homoserine-dehydrogenase
MKIGLLGFGTVGSGVYEIVKSTSTCFFDDIEVKKILVKDEKDKVMDIITTDAEEILNDKEIDLVVEVMGGIHPAYEYIMKALKNKKSVVTANKAVVAAYLKEFTKTAYENGVSFEYEASVCGGIPWIKSLEKVKRIDEVTEVYGIFNGTSNFILDNMTKEGYEFQEILKKAQEKGYAESDPSADIDGIDIMRKLLITSSLAFECEVSEKEIDVFGIRNIQKTDIEYFKNINCTVKLIAAGKKYEDKYCAVVEPVIFKNERIEAAVPQNFNIGTIYGKTIGELKFYGQGAGKLPTGNAIVQDIIDIIEAKGKLKERKFEKKLTKDSSLVSGKYYVRINNEEFEKENSDIIERKLENSGNLIYITKKIDCYTMRKTAEKYIKEGIFYARFED
>LS483487.1|SQJ02441.1|1507432_1508755_-|Aspartokinase-I/homoserine-dehydrogenase-I
MIKVAKFGGSSLADAEQFKKVKNIIENDENRRIVVVSAAGKRFKEDNKITDLLYLCYAHIKYSVSYESMFAIIENRYLEIRDELGLKCNLESEFRIIKSRMKKGMNRDYLVSRGEYLAGMLMAEYLGYDFIDAENVIFFDYNGKVDIAKTREAMEKAVERSPKGVIPGFYGTLPNGEIKLFSRGGSDITGAIVADCINASIYENWTDVSGILMADPNVVKDPKRIEIITYSELRELSYMGANVLHTDAVAPAKRANIPINIKNTNAPENPGTIIVDENNELLKNAKNYFITGIAGKKDFSVISIYKDHMSGEIGAIRKALEIFEKYKVSIEHIPTGIDTFSLVVATENIKKYLYEIVAEIKKECEPSEVKVIDNISLIATVGRNMADRPGMSGKLFAAIGNSGVNIRMISQGSDEINIIVGVENEDFEKAINVIYNNFVI
>LS483487.1|SQJ02440.1|1506400_1507420_-|Aspartate-semialdehyde-dehydrogenase
MKKYNVGILGATGAVGREMLKVLEEREFPVENIRLFASKRSAGKKMFFKGKEYEIEEAKKGIYTGIDILLGAVENEQAKEFIPSAIENGAVVIDNSSAYRMADDVPLIVPEVNPEAVENHKGLIANPNCATIIGLVAVNELNKYSEIERMIVSTYQAVSGAGSGGITELDAEIKAIAEGKDFVMETFPYQIAYNLIPQIGGFDEKGYSSEEMKFQKEGRKILGNPKLKVNCTCIRVPVYRSHSESITIEFKDKIDAAKAREILSKADGVKLVDDPYNKKYPMPLDTSDQDLVYVGRIREDITNDEGKGLTLWCCGDQVRKGAATNAVQIGELLIKKGMI
>LS483487.1|SQJ02439.1|1505102_1506185_-|Uncharacterised-protein
MALEKIVMLGDSIIDWNYNSKYINYGHAGFKTRDVLWLLEEKPEIEGDIGILLVGVNDILCSFKEEYTLNYYSKTVDILRKRFKKLVLLSMLPSDTPRINIKSKMLNEKLKELYPENFFDIYNLLLNDKELLADKYTVDGIHLNNDGYDVFNKALIEIVDKIKKDERGYPDRETAERELEEAGKLNPGQWITHSKYAALACERIAEHCPHMDSEKAYVIGLLHDIGRRVGIVQERHMLEGYNYCMSKGWKNAAQICITHSFMLKDITTSIGKWDISKEDYEFMKKFIEDVVYDDYDKLAQMCDSLALPDGFCFLEKRFVDVAMRYGVNEYTTKRWGAIYDIKKYFEKIAGKSIEEILEIS
>LS483487.1|SQJ02438.1|1501909_1504963_+|Cation-efflux-system-protein-CzcA
MNIIDYSIKNRIVTLFLTFVIIAGGIFSYTKLGKLEDPEFRVKEAIVVTLYPGADPHQVELQVTDEIESALQQIANVEYIESVSKAGYSEVKIKLNESLKAEVIDQYWDNVRKKINDAQKNLPTGVIPSIVLDDYGDVYGMFFAVTSDGYSKEELNRYVNYIKRELHSIPGVSKTTTYGKVDSAVEVVIDREKIDALGINEKLILASFISQNLPAYTNSIEHGDMKIRVDINEGFTSLKDIENLVVFSKDNLRGGEETVFLKDIATVKKSVSTPVKSKMRYNMKEAMGLMLSPEVGTSVIDTGKAIDKKLEEIKKNLPVGIEVEKVYYQPDLVTNAIGQFVNNLIASVVVVVGVLLFTMGMRSGLIIGSGLILSILGTLIYMLAVKMDMQRVSLGSFIIAMGMLVDNAIVVVDGTLTSLEKGENKYDALTKPAKKTAIPLLGATAIAVIAFLPMYLMPTDAGEYISTLFWIMAVSLGLSWVLALTQIPVFCDIFLKIDKTKESNGRKEKFYALCHTFLEKVLAHRFLSLGIVIGAFLFSMLLFTRLPITFFPDSDKKGFVVNLWLPEGTSLEKTDRVSQIVEKELLKDKDTINVTAAVGASPSRYYVATIPELQNNSFSQLIISVDKLDSVNRIGENIKRFVEENIPDTKVEVRKYVNGIPTKYPVEVRILGPDPHVLRELSKEVMDIMKAVPKAENIQTDWKNKVLTWSPVLSQNIERKNLISPLDVANSLNRATEGMTLGKYKEGTEIMPIVMREKSGGQQLEINNIGQTPVWGLGIKSLPLNRIIEKESLKWEDPEIWRRNRVRAIKVQCDISGSVTAESIRKAVEKEVNKLTLPENYKIEWGGEYYEQNKNVSAVFSSLPLQGTIMFSICVILFASLKDPFIIFAILPLSFIGIAPGLFLTGKSFGFMSIIGAISLSGMMIKNSIVLIDEIKYEINVDKKDPYTAVIDSAVSRIRPVSMASVTTIFGMLPLVFDPLYGDMAITIVFGLTASTMLTLFVVPLLYSLLYKIEKKQ
>LS483487.1|SQJ02452.1|1517355_1517640_-|CRISPR-associated-endoribonuclease-Cas2
MKGKNYNYIFLFYDINEKRVNKVFKICKKYLSHHQRSVFRGEITPSNLIKLRLELKDIIDKKEDFISIVKLVSEHYFDEEIIGTPWKDDENMFI
>LS483487.1|SQJ02455.1|1517640_1518642_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP
MGAGTKYILSKGSLERKDNSLCFKNESKTTYIPIEGVKEIFALDEISVNTKLFDFLAKHGITLHFFNHYEGYSGTFYPREKYVSGKLVIKQVEAHKNHKETIAKSIVQGIGKNIYELLYHYYRHDKKELKEYLEWLSNDVERRLNESNDINEIMAVEGEIWAKFYDSFKIFLREDFIMNKRVKRPPDNPINALISFGNSILYTKTIGQIYQTHLEQTISFLHSPSERRFSLSLDLSEVFKPIIVFRTIFECVNNRKLNVEKHFEKSLNYCILNEDGKKIFLGALEDRMNETFEHPILKRKVSYITAVKYDAYKLIKFLLEGKEFVPFSIKEKM
>LS483487.1|SQJ02457.1|1518651_1519134_-|CRISPR-associated-protein-Cas4
MPINGTIINYFIHCKRQCYMHYNRINMEDESELVKIGKAMHEEKKTDEITVENIKVDKIKKDYLIEIKKSDADIEAAKMQVLYYLLKLKEKGIDKKGKIEVIEKNKSSKKSYEIELTAENETYIKNIIEEIEKLVEQDELPPVEKNNKCKKCAYYSYCYI
>LS483487.1|SQJ02459.1|1519147_1521733_-|helicase-Cas3
MFEEELFSIEKYVKDEDKILAHISDRKNSETLLEHSDLVVKYNKKIYEDKNLKIVFDKLAEKFFGQNETVKKFWNEMIINASCMHDIGKLNINFQIDKMRNDIFERVLLCQSKRHSNLSARIYIDYFANKLIKLCSENKLNNDDIFKCFVFIVLNSYVISRHHSSTKNLNEDFFCEITTNYERYKELFDEVNNYCPNLKLSIKASRKFFKIFEKLKINGEKWNKYVENKDWNSIDYYIYTKLLYSLLVSSDFYATSEYSSGKPIDNLNLLTNIDEYRSVFNSTEIYKGIKLHQETGKYFKKDNINCYRSEMFIEAEKNLEMVNKENIVFLEAPTGSGKTVTSVNLALRLLEKNRELNKIFYIFPFNTLVEQTNSSLREIFQNSPLEESISVINSITPIKEVESEEEYKKDNIDYERSLLNRQFIHSPIVLTTHVHFFETLFGIDRESSFALPHLANSVVIMDEIQSYKNKIWKEIIIFLKKYADILNIKIIIMSATLPNLSFLLDQEAKIPSLITNREKYYSNSIFRERVSLDFCLLEKEYGREELLKKIEKIIFEKHKNQKVVVEFIKKASAFEFYKKLLESNEVCKEDIFLITGDDNKAERKRIIKEAKNKERKSMILVATQVIEAGVDIDMDIGFKNISILDADEQFLGRINRSCKKKNCKAYFFKLDDGGDIYKGDVRIQDRFTLMNEEMREILKNKNFNEYYTIILEALEKFSKDENKEENIDDFRKDKVVQLNFEEIYKRLKLIADDRRTKMIFLSRNINIEGEEILGNKVWNDFKEILLNNEMGYAERRVKLSKVMEKVDLFSYNIPVEMTRKLSYQESIGDNIRYIGDGEKYFVNGKFDRKKLQSDEDTEMIL
>LS483487.1|SQJ02461.1|1521740_1522496_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)
MEILKFTLSGRTAFFKIPEVNSYVYFSYGHIHKVSLLGLLGAVMGYGGYNSQGEKEYPEFYEKLKDIKISIMPKNTNGSFSKKIQFFNNSVGYASNEEGGNLIVKEQWLEDVEWDIFIKIEDTDIHKELKERMQNYNFEYTVYLGKNDHLATINDVEILQGENFLEDESEINSLFMKKSIEGFSEEEELDFLAPEEDEIKYDYKYEEKLPLSLHNISNQYVVETLIFTNKKCILKDKSNFAKVNNQIIEFY
>LS483487.1|SQJ02463.1|1522498_1523443_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair
MKNRIYGVIGIRSMMANWNADFTGFPKTTSSGEVFGSDKALKYPMKKMWESMGEKVLYIKSMKVDSGEGKKGEIGVRPKSLRERYDEIFEANLKVEKDKTNVIKNLFKAIDVKNFGATFAEEKNNVSITGAVQIGQGFNKYADTYTEEQQILSPFRDGSKDGIMGEASQSTLGTKIVSNEAHYFYPFVINPQVYRDFVKMGMTEGYTEEDYKKFKDAALTSATFFNSNSKLGCENEFALFIEVKEGYYLPELAQYIKFSKEKNCDVIELGFDELINQFKDNILSVEIYYNTLNVKVKHDIKGAKEYNIFTRKEV
>LS483487.1|SQJ02464.1|1523445_1525230_-|Uncharacterised-protein
MLRECVEIFTEIYNEKGERFITDSYELEPGDYFIVKSNGSYRHTKIERTKKIEENLNRRTIEDYEYLAERDYLSRLLDMNKPIDGKKQIHSNNYLSFFVKNNVLSEKKKELEESIEKYYEILKNPFLKYDKGEKKRVYAQLEEKLGKPSEEKIQKNYEWIKENLYKIKEEIKDGKEYIKIFFDEDIEEYKKENERYVIPNIYNSVDYNVIINDETYGLPNNNLNLNSKKPYLENKTRKEKYTVPYLLNEEEVFKQKKFFDYIYNMANSGKRNIYISSDKKEIIPLGNRESLSDDFTGYYLRIRKDKSESAIERYDIIPNYKAEIYPEIKILDCLGNGENSKLEYGISISKNFELAARLNSLLFDGKLYGMIFGELEVFDERIRNVANRYREIFFELIYKGDMKKFADNYKEIFLELIKNSLCKKDYITEAYDMFNLMTSIDDSIKKERGMTVNKHQEIKEKFRNIFETGVGEIENDEEYFFALGQLAKFLISRNKITVKTHELAVRIIENRDIEGLKREIYKLFRKYAYDIGFYSIKFNTLYERVLGYETESEKINMDRLLGGYLADSLIYEKSAKEENEANNETKETNGEENE
>LS483487.1|SQJ02466.1|1525248_1525944_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)
MKSWILELKVFLLEDIEPYKTIEKIAAFIDSTFDKDEYWKEYHKDRKVKEYCFNSFYPVKVNTKKYNAGEIYTIQIRTISEKLKEHFMKYLKDNITKELKGLVIKEREMEYRYIDKLVSVTPTILKTENGYWKKNITLEEYENRLKLNIIKKYNSIFNEELDENIDLFNFIEFKNRVPVKVKYKNINLLGDKLVLGIAKNETAQKLAFLCLSVGLGEMNARGFSYVNPRWV
>LS483487.1|SQJ02468.1|1527846_1528458_-|Uncharacterised-protein
MKNFSEKTVKNISICFLLLFLLLGINHHYYFGLMIIPIMIYFSTWKVVMFEDRIGRFSPIVIGLLVSAFIFYCQYYLQGEVVSTKEVIALKGTISLCIGLWLGSFIAKYIYMRIKFFINRIGSKGEQKDYKIIKMIIEQKKYFKKPGSKYYINFYYMIADVNGEEVKFLIEKDFYDKYLGKKTMNIKIKKGSLGIMYGVNLVD
>LS483487.1|SQJ02470.1|1528454_1529108_-|Uncharacterized-BCR,-COG1636
MKINYDLAMENQLQEIKKSENKPRLLLHSCCAPCSSAILEFLQEYFEITVYFFNPNITFEEEYLKRLEEQKEYHKKRGYKINVVEGEYNPEIDFFQKVKGLENEREGGKRCHQCYNLRLEETAKKAQELGYDYFTTVLSISPMKNAQWINEIGEELGKKYGIKFLNGDFKKKSRYLRSIEISKEYELYRQDYCGCIFSKVEREKIEKEKKEKDGGER

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Crispr_ID: LS483487_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483487_5

1526150-1527665

TypeI-B

Consensus_repeat	Method
ATTTAAAAACTACTC-AGTTAATATTCTAC	PILER-CR
ATTTAAAAACTACTCAGTTAATATTCTAC	CRISPRCasFinder
ATTTAAAAACTACTCAGTTAATATTCTAC	CRT

23 spacers

cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2

The CRISPR arrays of LS483487_5

>merge|LS483487|5|1526150-1527665|PILER-CR,CRISPRCasFinder,CRT
ATTTAAAAACTACTCAGTTAATATTCTACTCAGAAGCTTTTAAAAATCTAGAATTTGGAATATAATTTAAAAACTACTCAGTTAATATTCTACTAATTATAGTTCAGAAAATTTTAATAAAGAATTGAAATTTAAAAACTACTCAGTTAATATTCTACTGGCTACATATTTACTAGAATAATCTATAAGCGAATTTAAAAACTACTCAGTTAATATTCTACCCCTCTATAAAATAGAGGAGATAGCTTCTAAAACTTATTTAAAAACTACTCAGTTAATATTCTACAATAACTGCCTTTCAAGAGTGCTTAATGTTAACACAATTTAAAAACTACTCAGTTAATATTCTACTGCTTCACAATTCCGAAAAAGCTTTCTGGAAAGATAATTTAAAAACTACTCAGTTAATATTCTACGTGTACTCATAGCCAAAGTACTTCATAGAGCTTTTTATTTAAAAACTACTCAGTTAATATTCTACGTCATTGATCCACTTGCCATGGCCGTTGCTATAGAATTTAAAAACTACTCAGTTAATATTCTACAGAGAAATAATCATGGACACTCTACCCTAAATACATATTTAAAAACTACTCAGTTAATATTCTACTTTTACAAATTTTTTCTCAACAGAACTTTTTTTCTCATTTAAAAACTACTCAGTTAATATTCTACGAACTGATATAAACGAAATTTTAAAGGTATCTACATTTAAAAACTACTCAGTTAATATTCTACGTTAGGAATAGGATTTGTTTATTTATATAAAAAATCATTTAAAAACTACTCAGTTAATATTCTACAGCTACTGGAGCAGTAAGGACAATAGGAGATTTTTTATTTAAAAACTACTCAGTTAATATTCTACTTTTTTGCTTTTTCTCTCTCTTTTCCCCAGTAATAAATTTAAAAACTACTCAGTTAATATTCTACACCTTTTAGATTCTCTAATTTGTCAGAATTTTGTTTATTTAAAAACTACTCAGTTAATATTCTACAGAAGAGAAGTTATCAAGACAGCAAAGAACTTTGGCATTTAAAAACTACTCAGTTAATATTCTACTATGAAAGAGATTAAACATGATGATGAATGGCTTTGATTTAAAAACTACTCAGTTAATATTCTACATATTAAAAAATTAAATTTATAAAAAAATTAAGGAGATTTAAAAACTACTCAGTTAATATTCTACTAATAATATAAAATAATTATTTAAGAGACTAAAAAATTTAAAAACTACTCAGTTAATATTCTACGGGTAATATCCCCAGATAAACTAGCAGATATAGAAAATTTAAAAACTACTCAGTTAATATTCTACTTAGTCCATGTTACAGGATTGTTCAAAGTTCCTAATATTTAAAAACTACTCAGTTAATATTCTACTGGAGAATATAAGTTTATAAATGCAATAGAAGTCAAATTTAAAAACTACTCAGTTAATATTCTACTCTTCACTTGTAACATTCCCAAGTGCCTCTACCCCATTTAAAAACTACTCAGTTAATATTCTAC

>LS483487|5|2|1526150-1527665|PILER-CR
ATTTAAAAACTACTCAGTTAATATTCTAC	TCAGAAGCTTTTAAAAATCTAGAATTTGGAATATA
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATTATAGTTCAGAAAATTTTAATAAAGAATTGAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGCTACATATTTACTAGAATAATCTATAAGCGA
ATTTAAAAACTACTCAGTTAATATTCTAC	CCCTCTATAAAATAGAGGAGATAGCTTCTAAAACTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AATAACTGCCTTTCAAGAGTGCTTAATGTTAACACA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGCTTCACAATTCCGAAAAAGCTTTCTGGAAAGATA
ATTTAAAAACTACTCAGTTAATATTCTAC	GTGTACTCATAGCCAAAGTACTTCATAGAGCTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	GTCATTGATCCACTTGCCATGGCCGTTGCTATAGA
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAGAAATAATCATGGACACTCTACCCTAAATACAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTACAAATTTTTTCTCAACAGAACTTTTTTTCTC
ATTTAAAAACTACTCAGTTAATATTCTAC	GAACTGATATAAACGAAATTTTAAAGGTATCTAC
ATTTAAAAACTACTCAGTTAATATTCTAC	GTTAGGAATAGGATTTGTTTATTTATATAAAAAATC
ATTTAAAAACTACTCAGTTAATATTCTAC	AGCTACTGGAGCAGTAAGGACAATAGGAGATTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTTTGCTTTTTCTCTCTCTTTTCCCCAGTAATAA
ATTTAAAAACTACTCAGTTAATATTCTAC	ACCTTTTAGATTCTCTAATTTGTCAGAATTTTGTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAAGAGAAGTTATCAAGACAGCAAAGAACTTTGGC
ATTTAAAAACTACTCAGTTAATATTCTAC	TATGAAAGAGATTAAACATGATGATGAATGGCTTTG
ATTTAAAAACTACTCAGTTAATATTCTAC	ATATTAAAAAATTAAATTTATAAAAAAATTAAGGAG
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATAATATAAAATAATTATTTAAGAGACTAAAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	GGGTAATATCCCCAGATAAACTAGCAGATATAGAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TTAGTCCATGTTACAGGATTGTTCAAAGTTCCTAAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGAGAATATAAGTTTATAAATGCAATAGAAGTCAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TCTTCACTTGTAACATTCCCAAGTGCCTCTACCCC
ATTTAAAAACTACTCAGTTAATATTCTAC

>LS483487|5|5|1526150-1527665|CRISPRCasFinder
ATTTAAAAACTACTCAGTTAATATTCTAC	TCAGAAGCTTTTAAAAATCTAGAATTTGGAATATA
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATTATAGTTCAGAAAATTTTAATAAAGAATTGAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGCTACATATTTACTAGAATAATCTATAAGCGA
ATTTAAAAACTACTCAGTTAATATTCTAC	CCCTCTATAAAATAGAGGAGATAGCTTCTAAAACTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AATAACTGCCTTTCAAGAGTGCTTAATGTTAACACA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGCTTCACAATTCCGAAAAAGCTTTCTGGAAAGATA
ATTTAAAAACTACTCAGTTAATATTCTAC	GTGTACTCATAGCCAAAGTACTTCATAGAGCTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	GTCATTGATCCACTTGCCATGGCCGTTGCTATAGA
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAGAAATAATCATGGACACTCTACCCTAAATACAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTACAAATTTTTTCTCAACAGAACTTTTTTTCTC
ATTTAAAAACTACTCAGTTAATATTCTAC	GAACTGATATAAACGAAATTTTAAAGGTATCTAC
ATTTAAAAACTACTCAGTTAATATTCTAC	GTTAGGAATAGGATTTGTTTATTTATATAAAAAATC
ATTTAAAAACTACTCAGTTAATATTCTAC	AGCTACTGGAGCAGTAAGGACAATAGGAGATTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTTTGCTTTTTCTCTCTCTTTTCCCCAGTAATAA
ATTTAAAAACTACTCAGTTAATATTCTAC	ACCTTTTAGATTCTCTAATTTGTCAGAATTTTGTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAAGAGAAGTTATCAAGACAGCAAAGAACTTTGGC
ATTTAAAAACTACTCAGTTAATATTCTAC	TATGAAAGAGATTAAACATGATGATGAATGGCTTTG
ATTTAAAAACTACTCAGTTAATATTCTAC	ATATTAAAAAATTAAATTTATAAAAAAATTAAGGAG
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATAATATAAAATAATTATTTAAGAGACTAAAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	GGGTAATATCCCCAGATAAACTAGCAGATATAGAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TTAGTCCATGTTACAGGATTGTTCAAAGTTCCTAAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGAGAATATAAGTTTATAAATGCAATAGAAGTCAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TCTTCACTTGTAACATTCCCAAGTGCCTCTACCCC
ATTTAAAAACTACTCAGTTAATATTCTAC

>LS483487|5|2|1526150-1527665|CRT
ATTTAAAAACTACTCAGTTAATATTCTAC	TCAGAAGCTTTTAAAAATCTAGAATTTGGAATATA
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATTATAGTTCAGAAAATTTTAATAAAGAATTGAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGCTACATATTTACTAGAATAATCTATAAGCGA
ATTTAAAAACTACTCAGTTAATATTCTAC	CCCTCTATAAAATAGAGGAGATAGCTTCTAAAACTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AATAACTGCCTTTCAAGAGTGCTTAATGTTAACACA
ATTTAAAAACTACTCAGTTAATATTCTAC	TGCTTCACAATTCCGAAAAAGCTTTCTGGAAAGATA
ATTTAAAAACTACTCAGTTAATATTCTAC	GTGTACTCATAGCCAAAGTACTTCATAGAGCTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	GTCATTGATCCACTTGCCATGGCCGTTGCTATAGA
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAGAAATAATCATGGACACTCTACCCTAAATACAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTACAAATTTTTTCTCAACAGAACTTTTTTTCTC
ATTTAAAAACTACTCAGTTAATATTCTAC	GAACTGATATAAACGAAATTTTAAAGGTATCTAC
ATTTAAAAACTACTCAGTTAATATTCTAC	GTTAGGAATAGGATTTGTTTATTTATATAAAAAATC
ATTTAAAAACTACTCAGTTAATATTCTAC	AGCTACTGGAGCAGTAAGGACAATAGGAGATTTTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	TTTTTTGCTTTTTCTCTCTCTTTTCCCCAGTAATAA
ATTTAAAAACTACTCAGTTAATATTCTAC	ACCTTTTAGATTCTCTAATTTGTCAGAATTTTGTTT
ATTTAAAAACTACTCAGTTAATATTCTAC	AGAAGAGAAGTTATCAAGACAGCAAAGAACTTTGGC
ATTTAAAAACTACTCAGTTAATATTCTAC	TATGAAAGAGATTAAACATGATGATGAATGGCTTTG
ATTTAAAAACTACTCAGTTAATATTCTAC	ATATTAAAAAATTAAATTTATAAAAAAATTAAGGAG
ATTTAAAAACTACTCAGTTAATATTCTAC	TAATAATATAAAATAATTATTTAAGAGACTAAAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	GGGTAATATCCCCAGATAAACTAGCAGATATAGAAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TTAGTCCATGTTACAGGATTGTTCAAAGTTCCTAAT
ATTTAAAAACTACTCAGTTAATATTCTAC	TGGAGAATATAAGTTTATAAATGCAATAGAAGTCAA
ATTTAAAAACTACTCAGTTAATATTCTAC	TCTTCACTTGTAACATTCCCAAGTGCCTCTACCCC
ATTTAAAAACTACTCAGTTAATATTCTAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483487.1\|SQJ02459.1\|1519147_1521733_-\|helicase-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|187770
LS483487.1\|SQJ02472.1\|1529185_1529614_-\|Uncharacterized-N-acetyltransferase-YjaB	unknown	unknown	gnl\|CDD\|236715
LS483487.1\|SQJ02466.1\|1525248_1525944_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
LS483487.1\|SQJ02477.1\|1533015_1534197_-\|Nuclease-sbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
LS483487.1\|SQJ02485.1\|1538288_1538483_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ02483.1\|1537632_1538277_+\|Predicted-membrane-protein	unknown	unknown	gnl\|CDD\|377734
LS483487.1\|SQJ02470.1\|1528454_1529108_-\|Uncharacterized-BCR,-COG1636	unknown	unknown	gnl\|CDD\|376894
LS483487.1\|SQJ02447.1\|1514642_1515761_+\|Transposase-and-inactivated-derivatives	unknown	unknown	gnl\|CDD\|378147
LS483487.1\|SQJ02455.1\|1517640_1518642_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
LS483487.1\|SQJ02481.1\|1537190_1537382_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ02449.1\|1515875_1516064_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ02474.1\|1529606_1529774_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|380294
LS483487.1\|SQJ02461.1\|1521740_1522496_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
LS483487.1\|SQJ02468.1\|1527846_1528458_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ02457.1\|1518651_1519134_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
LS483487.1\|SQJ02463.1\|1522498_1523443_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
LS483487.1\|SQJ02475.1\|1530230_1533029_-\|Probable-DNA-double-strand-break-repair-Rad50-ATPase	unknown	unknown	gnl\|CDD\|235175
LS483487.1\|SQJ02452.1\|1517355_1517640_-\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
LS483487.1\|SQJ02479.1\|1534199_1537037_-\|ATP-dependent-DNA-helicase-pcrA	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|223288
LS483487.1\|SQJ02464.1\|1523445_1525230_-\|Uncharacterised-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234

Protein	Function_ID	Function_description	E-value
LS483487.1\|SQJ02459.1\|1519147_1521733_-\|helicase-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	1.15479e-32
LS483487.1\|SQJ02472.1\|1529185_1529614_-\|Uncharacterized-N-acetyltransferase-YjaB	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	2.44949e-46
LS483487.1\|SQJ02466.1\|1525248_1525944_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.69572e-12
LS483487.1\|SQJ02477.1\|1533015_1534197_-\|Nuclease-sbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	4.15106e-40
LS483487.1\|SQJ02483.1\|1537632_1538277_+\|Predicted-membrane-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	2.45478e-18
LS483487.1\|SQJ02470.1\|1528454_1529108_-\|Uncharacterized-BCR,-COG1636	gnl\|CDD\|376894	pfam02677, DUF208, Uncharacterized BCR, COG1636.	5.03367e-100
LS483487.1\|SQJ02447.1\|1514642_1515761_+\|Transposase-and-inactivated-derivatives	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	1.79162e-08
LS483487.1\|SQJ02455.1\|1517640_1518642_-\|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.31277e-145
LS483487.1\|SQJ02474.1\|1529606_1529774_-\|Uncharacterised-protein	gnl\|CDD\|380294	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated BREX (bacteriophage exclusion) type 1 systems. The phage resistance appears not to be through restriction-modification, as phage DNA appears not to get degraded, but it does manage to inhibit phage replication.	0.000514978
LS483487.1\|SQJ02461.1\|1521740_1522496_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	7.66148e-49
LS483487.1\|SQJ02457.1\|1518651_1519134_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	9.0742e-50
LS483487.1\|SQJ02463.1\|1522498_1523443_-\|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.3397e-47
LS483487.1\|SQJ02475.1\|1530230_1533029_-\|Probable-DNA-double-strand-break-repair-Rad50-ATPase	gnl\|CDD\|235175	PRK03918, PRK03918, DNA double-strand break repair ATPase Rad50.	3.81859e-37
LS483487.1\|SQJ02452.1\|1517355_1517640_-\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.31304e-26
LS483487.1\|SQJ02479.1\|1534199_1537037_-\|ATP-dependent-DNA-helicase-pcrA	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	3.3067e-93
LS483487.1\|SQJ02464.1\|1523445_1525230_-\|Uncharacterised-protein	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	1.86199e-09

>LS483487.1|SQJ02466.1|1525248_1525944_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)
MKSWILELKVFLLEDIEPYKTIEKIAAFIDSTFDKDEYWKEYHKDRKVKEYCFNSFYPVKVNTKKYNAGEIYTIQIRTISEKLKEHFMKYLKDNITKELKGLVIKEREMEYRYIDKLVSVTPTILKTENGYWKKNITLEEYENRLKLNIIKKYNSIFNEELDENIDLFNFIEFKNRVPVKVKYKNINLLGDKLVLGIAKNETAQKLAFLCLSVGLGEMNARGFSYVNPRWV
>LS483487.1|SQJ02464.1|1523445_1525230_-|Uncharacterised-protein
MLRECVEIFTEIYNEKGERFITDSYELEPGDYFIVKSNGSYRHTKIERTKKIEENLNRRTIEDYEYLAERDYLSRLLDMNKPIDGKKQIHSNNYLSFFVKNNVLSEKKKELEESIEKYYEILKNPFLKYDKGEKKRVYAQLEEKLGKPSEEKIQKNYEWIKENLYKIKEEIKDGKEYIKIFFDEDIEEYKKENERYVIPNIYNSVDYNVIINDETYGLPNNNLNLNSKKPYLENKTRKEKYTVPYLLNEEEVFKQKKFFDYIYNMANSGKRNIYISSDKKEIIPLGNRESLSDDFTGYYLRIRKDKSESAIERYDIIPNYKAEIYPEIKILDCLGNGENSKLEYGISISKNFELAARLNSLLFDGKLYGMIFGELEVFDERIRNVANRYREIFFELIYKGDMKKFADNYKEIFLELIKNSLCKKDYITEAYDMFNLMTSIDDSIKKERGMTVNKHQEIKEKFRNIFETGVGEIENDEEYFFALGQLAKFLISRNKITVKTHELAVRIIENRDIEGLKREIYKLFRKYAYDIGFYSIKFNTLYERVLGYETESEKINMDRLLGGYLADSLIYEKSAKEENEANNETKETNGEENE
>LS483487.1|SQJ02463.1|1522498_1523443_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair
MKNRIYGVIGIRSMMANWNADFTGFPKTTSSGEVFGSDKALKYPMKKMWESMGEKVLYIKSMKVDSGEGKKGEIGVRPKSLRERYDEIFEANLKVEKDKTNVIKNLFKAIDVKNFGATFAEEKNNVSITGAVQIGQGFNKYADTYTEEQQILSPFRDGSKDGIMGEASQSTLGTKIVSNEAHYFYPFVINPQVYRDFVKMGMTEGYTEEDYKKFKDAALTSATFFNSNSKLGCENEFALFIEVKEGYYLPELAQYIKFSKEKNCDVIELGFDELINQFKDNILSVEIYYNTLNVKVKHDIKGAKEYNIFTRKEV
>LS483487.1|SQJ02461.1|1521740_1522496_-|Uncharacterized-protein-predicted-to-be-involved-in-DNA-repair-(RAMP-superfamily)
MEILKFTLSGRTAFFKIPEVNSYVYFSYGHIHKVSLLGLLGAVMGYGGYNSQGEKEYPEFYEKLKDIKISIMPKNTNGSFSKKIQFFNNSVGYASNEEGGNLIVKEQWLEDVEWDIFIKIEDTDIHKELKERMQNYNFEYTVYLGKNDHLATINDVEILQGENFLEDESEINSLFMKKSIEGFSEEEELDFLAPEEDEIKYDYKYEEKLPLSLHNISNQYVVETLIFTNKKCILKDKSNFAKVNNQIIEFY
>LS483487.1|SQJ02459.1|1519147_1521733_-|helicase-Cas3
MFEEELFSIEKYVKDEDKILAHISDRKNSETLLEHSDLVVKYNKKIYEDKNLKIVFDKLAEKFFGQNETVKKFWNEMIINASCMHDIGKLNINFQIDKMRNDIFERVLLCQSKRHSNLSARIYIDYFANKLIKLCSENKLNNDDIFKCFVFIVLNSYVISRHHSSTKNLNEDFFCEITTNYERYKELFDEVNNYCPNLKLSIKASRKFFKIFEKLKINGEKWNKYVENKDWNSIDYYIYTKLLYSLLVSSDFYATSEYSSGKPIDNLNLLTNIDEYRSVFNSTEIYKGIKLHQETGKYFKKDNINCYRSEMFIEAEKNLEMVNKENIVFLEAPTGSGKTVTSVNLALRLLEKNRELNKIFYIFPFNTLVEQTNSSLREIFQNSPLEESISVINSITPIKEVESEEEYKKDNIDYERSLLNRQFIHSPIVLTTHVHFFETLFGIDRESSFALPHLANSVVIMDEIQSYKNKIWKEIIIFLKKYADILNIKIIIMSATLPNLSFLLDQEAKIPSLITNREKYYSNSIFRERVSLDFCLLEKEYGREELLKKIEKIIFEKHKNQKVVVEFIKKASAFEFYKKLLESNEVCKEDIFLITGDDNKAERKRIIKEAKNKERKSMILVATQVIEAGVDIDMDIGFKNISILDADEQFLGRINRSCKKKNCKAYFFKLDDGGDIYKGDVRIQDRFTLMNEEMREILKNKNFNEYYTIILEALEKFSKDENKEENIDDFRKDKVVQLNFEEIYKRLKLIADDRRTKMIFLSRNINIEGEEILGNKVWNDFKEILLNNEMGYAERRVKLSKVMEKVDLFSYNIPVEMTRKLSYQESIGDNIRYIGDGEKYFVNGKFDRKKLQSDEDTEMIL
>LS483487.1|SQJ02457.1|1518651_1519134_-|CRISPR-associated-protein-Cas4
MPINGTIINYFIHCKRQCYMHYNRINMEDESELVKIGKAMHEEKKTDEITVENIKVDKIKKDYLIEIKKSDADIEAAKMQVLYYLLKLKEKGIDKKGKIEVIEKNKSSKKSYEIELTAENETYIKNIIEEIEKLVEQDELPPVEKNNKCKKCAYYSYCYI
>LS483487.1|SQJ02455.1|1517640_1518642_-|CRISPR-associated-endonuclease-Cas1,-subtype-I-B/HMARI/TNEAP
MGAGTKYILSKGSLERKDNSLCFKNESKTTYIPIEGVKEIFALDEISVNTKLFDFLAKHGITLHFFNHYEGYSGTFYPREKYVSGKLVIKQVEAHKNHKETIAKSIVQGIGKNIYELLYHYYRHDKKELKEYLEWLSNDVERRLNESNDINEIMAVEGEIWAKFYDSFKIFLREDFIMNKRVKRPPDNPINALISFGNSILYTKTIGQIYQTHLEQTISFLHSPSERRFSLSLDLSEVFKPIIVFRTIFECVNNRKLNVEKHFEKSLNYCILNEDGKKIFLGALEDRMNETFEHPILKRKVSYITAVKYDAYKLIKFLLEGKEFVPFSIKEKM
>LS483487.1|SQJ02452.1|1517355_1517640_-|CRISPR-associated-endoribonuclease-Cas2
MKGKNYNYIFLFYDINEKRVNKVFKICKKYLSHHQRSVFRGEITPSNLIKLRLELKDIIDKKEDFISIVKLVSEHYFDEEIIGTPWKDDENMFI
>LS483487.1|SQJ02449.1|1515875_1516064_+|Uncharacterised-protein
MKLLKNILIGLAILWFAWVFLLQRLGELLFFFNAPPALQIIIVVAIIIIIRLIWVDKNNKHY
>LS483487.1|SQJ02447.1|1514642_1515761_+|Transposase-and-inactivated-derivatives
MDTEKELQLQRFKIIEPFLRKEKKLKEIEEETGVSYATLKRWVNAYKKNGILGLDKKQRTDKDSYRAIDEDGVEFIEQICRESKETKISKLYSFCKEKLSSKYNISYPTFYRIVSNLDGFFNKSSSLHMKKIKKENQVYLVLEIPLYILVSEEESEHKIVPQLLISIDVATLKPINHALNYNTSSIYTLLSFIRESMLKVSVKSGKLVKPQEILVSSENINNKKILKEIYDSTSIKITEYFSENEEIRKFVSFLEEDIEKFYYQNNKILSYQNLKSFLDSYIYLDNQKYDFALKYEMIEVIPSIRELDIFLQEASRKISKSSLRFNNFIYTNNSLNTLEGKKVIVKYSPLDTEILYLFFRNQFLGTANISAG
>LS483487.1|SQJ02468.1|1527846_1528458_-|Uncharacterised-protein
MKNFSEKTVKNISICFLLLFLLLGINHHYYFGLMIIPIMIYFSTWKVVMFEDRIGRFSPIVIGLLVSAFIFYCQYYLQGEVVSTKEVIALKGTISLCIGLWLGSFIAKYIYMRIKFFINRIGSKGEQKDYKIIKMIIEQKKYFKKPGSKYYINFYYMIADVNGEEVKFLIEKDFYDKYLGKKTMNIKIKKGSLGIMYGVNLVD
>LS483487.1|SQJ02470.1|1528454_1529108_-|Uncharacterized-BCR,-COG1636
MKINYDLAMENQLQEIKKSENKPRLLLHSCCAPCSSAILEFLQEYFEITVYFFNPNITFEEEYLKRLEEQKEYHKKRGYKINVVEGEYNPEIDFFQKVKGLENEREGGKRCHQCYNLRLEETAKKAQELGYDYFTTVLSISPMKNAQWINEIGEELGKKYGIKFLNGDFKKKSRYLRSIEISKEYELYRQDYCGCIFSKVEREKIEKEKKEKDGGER
>LS483487.1|SQJ02472.1|1529185_1529614_-|Uncharacterized-N-acetyltransferase-YjaB
MIRNLRNDDIDIVMELWKESTMEAQNFIPDEYWLENYDNVKNNYLPNSDTYVSEEDGEIKGFVSLIENIFIGGLFLKVDCQRKGIGSKIIDFLKADHDKLQLAVYDRNVRAMNFYLKSGFKITNTEIDEKTNEKEHLMEWKR
>LS483487.1|SQJ02474.1|1529606_1529774_-|Uncharacterised-protein
MSKEEIEKLEKMIDELKEELHECDYEPERNALLKKYKKLSAQIEELKKMKKEKND
>LS483487.1|SQJ02475.1|1530230_1533029_-|Probable-DNA-double-strand-break-repair-Rad50-ATPase
MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREAIKYGKKSAKIEIEFTGIDGEEYIVTRKIPGATSIYKKDNPELQLVGKEERIRELCGIKGDLKGIYDNVIVAKQNEFISSFKEKDNEREKIFNKVFNTDIYKKIYEGYSRDAVNKYEKDIEIEKNSMENISEIMEDPADIKEKLDFEKERAKEYNLSLNLLNEEKNKIKELLNKYNITNLEIEKLTGEINALSENIKNKNEELGKISASIKESEISEKIVKENKEKYEEYQKYSLEINRLKIRKKELEKIKEECLLKEKEINILEKLNSEIDGEIKVFENKKENNESLLLERKNKLFEIEKEIIEKKEKAVEYKSELDKIIPLLVKLEEFERKLEAGENNIRTFEIKLEEKLEEINKEKAKREYLTDENLDKQLSGIEESEKKKKILEDDILKKELLLKENEEAFEMLKTSYCPYLKEQCKNLDGKNIDEYFKDKREKYIEEIESKKNSVKEINENLTNKNEIIEKIIRLDTLSKEITEKEVEFIQEKLKLETGKSKIENEKLKLKNFKLENSIENKEKLSEIKITLKTKIDNLDLEKSEAVKNELEKEIDSLNKSIGMELKNIELQNIEIRKNIESIDEKRKFINDNRIFSDELLSINEKIDKIEKKIDTLENSNNLYLENYKKAMEKSKLEKNLESIKTTIKNSEMRFQEKNILIKLKREEMEKIDLKTLQEKDLKVTFDIEEIREKLGAVNREIENLKMKLDEIKKYEDLLKNKRKYLEKLNMKLELTKIFREKIKSMGKEVSKNMLKEIEILATENFRKITGRGEKIVWSNEDKNKYVVFLDGDRGELKFEQLSGGEQVAVAISIRGAMSELFTESKFSIFDEPTNNLDTERRRSLADSIGEILKNLEQSIIVTHDDTFREMAQKVIEL
>LS483487.1|SQJ02477.1|1533015_1534197_-|Nuclease-sbcCD-subunit-D
MKILHCSDIHLGKRPFGTKEFSQKRYLDFFNAFEQSADRGIEKKVDVFLITGDLFDKKELSPDTLDRCEKVFLKLKNNNIQVLLIEGNHDNISGYDEINSWLGYLERKGYVRRGKYKASNEGYDFEKITIEDVNFYGVGYPGFAVDEVLEKLSENLDENEKNIVMVHTALGGSEFLPGLVNTDIIKKFKDKVIYMAGGHLHSFVSYPKDNPYFFIPGSTEFWNVLNEKNNSKGVIIFDTDTLEYEFSELSPRKRIEKEFIYEGDILQEFEEFTKALELTGEELVIVNVKLKDSGYINVNELEKILENSGALKGYIKLRYPNSIFDRNLGEEGCYSVRDVEKEIINQWEEFSDAEKVTAYLQKFKEYQEENDREKDFFELFDAMLEEEIGNENK
>LS483487.1|SQJ02479.1|1534199_1537037_-|ATP-dependent-DNA-helicase-pcrA
MENREINLNREQKAAVTHTEGPLLVIAGPGSGKTRTLVERVVHMLTEKEISPEKIMVSTFTDRASKELIGRISERIKDYDLKVNINDIYMGTLHSICLRLIDEYIEYSDFSEGYQVLDELEQHFFIFSKTKEFKELEGYNEFFKEIPSANNWGKAGKIQKWVNRINEEGRSLDYVKEEQDKKITFLKNAHELYQKLLIEDNVIDFASIQREIYRMLLNNEIVAEEIREKIQYIMIDEYQDTNSIQEKIIFELGGTRKNICVVGDDDQGIYRFRGASVKNILEFPEKFEENQCKIITLDINYRSHRDIITFCNRWISLINWKNFRYQKDIQPPPEKEFVDNPGVIRIGGGSETQWKENIYKFIKNLKTTGKIEDYSQVAFLFKSVRFSRVKELIDYLEDRGIPAYSPRSKNFFYRNEVKLVLGALLVLFPQSKPLVLDDVYIRKTAAYYNDCINVLKKHLSKDKELYEWILKKREENRDLGEEKSENISRIFYSLFEFKTFKELIDLNKNGAKEGREIYNLGILSQIFDKFENLSRIEYITKENIEKVVRYLFVTHIRLLFEKGIDEYENKETLLGAVSFMTIHQAKGLEFPVVIVGSLESEPDNREPTEEDRLEDIITLGNDFEPKDRKNIFDFWRVFYTAFSRAQNLLVLTSIENRAGGKELPSKIFKPVYETIPYWNDESFHFERLQISKLKEADTKEFLSYTGHILIYEDCPLRYRFYKEFEFKPLKTNKTSFGILVHKSIENIHKEVKADTEKKYSDEELKELIEKNYNMLKKNIRVFLGENIRERAFEQIKRYVDSAENNWANIISSEEKEYSVENSYILEGTIDLLRKQGDKIELIDFKTGRFSGYEDARYISYERQIEIYSHMLREKYDLENLKAYLYYTGNRNEPMVEIPLKKDKIDKTISNFDNTVKKILNKEFNRREYSEEKCSECEFKDYCRGE
>LS483487.1|SQJ02481.1|1537190_1537382_+|Uncharacterised-protein
MKEHKYVNFSQDYDVNYIINRYPKKAHDTVKEYLETLKSQKNLTHEDVFSLIEKNLKLKKITK
>LS483487.1|SQJ02483.1|1537632_1538277_+|Predicted-membrane-protein
MLCFLGGYINAICIVKYSYTVSHFTGNISKAAINISQGNFSEVFKVLTILIAFVIGTTISGSLVDGREFNLKRRYGYASIILGTGLLVLYSFLYDTLPFFYYLPFMVGVENGLFISYKGVVVRTSHITGSLTDMGVYIGHCIKGKTEDKWKVYFCLFTILAFMAGGFFGIEAFYIFKKEAFLIAAFLYIGVGLTYFTIRQRYQKVIGYPDLKLY
>LS483487.1|SQJ02485.1|1538288_1538483_+|Uncharacterised-protein
MEKYLITKEEKENYMKEFPVLNCAESIGIDYDGYVSVKCKKLSGTCTYRISQKEEYKNCRLLTK

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Crispr_ID: LS483487_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483487_6

1655995-1657062

Orphan

Consensus_repeat	Method
ATTTAAAAACCCCAAAGGTTACTATTCAAT	PILER-CR
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CRISPRCasFinder
TTGAATANNAACCTNNNNNGTTTTTAAAT	CRT
TTTAAAAACTTATC-AGTTGATATTCAAT	PILER-CR

16 spacers

The CRISPR arrays of LS483487_6

>merge|LS483487|6|1655995-1657062|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
ATTGAATAGTAACCTTTGGGGTTTTTAAATTTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTCATTGAATAGTAACCTTTGGGGTTTTTAAATTAAAATACATGGAAAATATTTATGAATTAAAAAATAATTGAATAGTAACCTTTGGGGTTTTTAAATCAAGCAATTAAAAAACAAATTAAATCTTTATTAGGATTGAATAGTAACCTTTGGGGTTTTTAAATCTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTTATTGAATAGTAACCTTTGGGGTTTTTAAATGAAGCTTTATGAATTTAGTATCTACTCCCTTAAATCATTGAATAGTAACCTTTGGGGTTTTTAAATTCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGTATTGAATAGTAACCTTTGGGGTTTTTAAATTTGTTATCTTAATACTTCCATCTTCATTATAATGCAATTGAATAGTAACCTGATAAGTTTTTAAATATAGATCAAACTTTGAGAATAAGAGATCAATTTAGAATTGAATATCAACTGATAAGTTTTTAAATGAAGTTGGGATGACCATAGCTGCAAGAGTTAAGCAATTGAATATCAACTGATAAGTTTTTAAATGAAGGAACTAAAATAGTAGGGAGAAATCCTAGAAATTATTGAATATCAACTGATAAGTTTTTAAATAGTTCAAGTTCTCCAGTAAGTATATTGTAGCCTTTATTGAATATCAACTTTTAAATGGAGAAGGGGCAAGGGTGATGATGGATACTAACCCTATTGAATATCAACTGATAAGTTTTTAAATGCATTAGTTGGTAAAACTTTAAAATTAACTTCAGTATTGAATATCAACTCATAAGTTTTTAAACAGATATAGCATGATTCCAAGTTATGTAATAACTCATTGAATATCAACTGATAAGTTTTTAAATACCTTAGAAGAATCAAAAATTTTCTTAGTCTCTTTAAATTGAATATCAACTCATAAGTTTTTAAATGATCAAGAAAGATTAAATAAAGTTGGAATTATGACTAATTGAATATCAACTCATAAGTTTTCTCCC

>LS483487|6|3|1655995-1656421|PILER-CR
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TAAAATACATGGAAAATATTTATGAATTAAAAAATA
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CAAGCAATTAAAAAACAAATTAAATCTTTATTAGG
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTT
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	GAAGCTTTATGAATTTAGTATCTACTCCCTTAAATC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGT
ATTGAATAGTAACCTTTGGGGTTTTTAAATTTGTTATCTTAATACTTCCATCTTCATTATAATGCAATTGAATAGTAACCTGATAAGTTTTTAAATATAGATCAAACTTTGAGAATAAGAGATCAATTTAGAATTGAATATCAACTGATAAGTTTTTAAA	TGAAGTTGGGATGACCATAGCTGCAAGAGTTAAGCA
ATTGAATATCAACTGATAAGTTTTTAAA	TGAAGGAACTAAAATAGTAGGGAGAAATCCTAGAAATT
ATTGAATATCAACTGATAAGTTTTTAAA	TAGTTCAAGTTCTCCAGTAAGTATATTGTAGCCTTT
ATTGAATATCAACTTTTAAATGGAGAAG	GGGCAAGGGTGATGATGGATACTAACCCTATTGAATATCAACT
GATAAGTTTTTAAATGCATTAGTTGGTA	AAACTTTAAAATTAACTTCAGTATTGAATATCAACT
CATAAGTTTTTAAACAGATATAGCATGA	TTCCAAGTTATGTAATAACTCATTGAATATCAACT
GATAAGTTTTTAAATACCTTAGAAGAAT	CAAAAATTTTCTTAGTCTCTTTAAATTGAATATCAACT


>LS483487|6|6|1655995-1656487|CRISPRCasFinder
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TAAAATACATGGAAAATATTTATGAATTAAAAAATA
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CAAGCAATTAAAAAACAAATTAAATCTTTATTAGG
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTT
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	GAAGCTTTATGAATTTAGTATCTACTCCCTTAAATC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGT
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TTGTTATCTTAATACTTCCATCTTCATTATAATGCA
ATTGAATAGTAACCTGATAAGTTTTTAAAT

>LS483487|6|3|1655997-1657062|CRT
TGAATAGTAACCTTTGGGGTTTTTAAAT	TTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTCAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	TAAAATACATGGAAAATATTTATGAATTAAAAAATAAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	CAAGCAATTAAAAAACAAATTAAATCTTTATTAGGAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	CTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTTAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	GAAGCTTTATGAATTTAGTATCTACTCCCTTAAATCAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	TCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGTAT
TGAATAGTAACCTTTGGGGTTTTTAAAT	TTGTTATCTTAATACTTCCATCTTCATTATAATGCAAT
TGAATAGTAACCTGATAAGTTTTTAAAT	ATAGATCAAACTTTGAGAATAAGAGATCAATTTAGAA
TTGAATATCAACTGATAAGTTTTTAAAT	GAAGTTGGGATGACCATAGCTGCAAGAGTTAAGCAA
TTGAATATCAACTGATAAGTTTTTAAAT	GAAGGAACTAAAATAGTAGGGAGAAATCCTAGAAATTA
TTGAATATCAACTGATAAGTTTTTAAAT	AGTTCAAGTTCTCCAGTAAGTATATTGTAGCCTTTA
TTGAATATCAACTTTTAAATGGAGAAGG	GGCAAGGGTGATGATGGATACTAACCCTA
TTGAATATCAACTGATAAGTTTTTAAAT	GCATTAGTTGGTAAAACTTTAAAATTAACTTCAGTA
TTGAATATCAACTCATAAGTTTTTAAAC	AGATATAGCATGATTCCAAGTTATGTAATAACTCA
TTGAATATCAACTGATAAGTTTTTAAAT	ACCTTAGAAGAATCAAAAATTTTCTTAGTCTCTTTAAA
TTGAATATCAACTCATAAGTTTTTAAAT	GATCAAGAAAGATTAAATAAAGTTGGAATTATGACTAA
TTGAATATCAACTCATAAGTTTTCTCCC

>LS483487|6|4|1656524-1656995|PILER-CR
	TTTAAAACTCCTTTTCAATCTCCTTTTTATCCATTC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TAAAATACATGGAAAATATTTATGAATTAAAAAATA
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CAAGCAATTAAAAAACAAATTAAATCTTTATTAGG
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	CTCAAAGGATAGACTCCACGCTTTTTTTCAACTGTT
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	GAAGCTTTATGAATTTAGTATCTACTCCCTTAAATC
ATTGAATAGTAACCTTTGGGGTTTTTAAAT	TCAGAGGAGATGCAGGAATTACTAGAAATAGCTTCAGT
ATTGAATAGTAACCTTTGGGGTTTTTAAATTTGTTATCTTAATACTTCCATCTTCATTATAATGCAATTGAATAGTAACCTGATAAGTTTTTAAATATAGATCAAACTTTGAGAATAAGAGATCAATTTAGAATTGAATATCAACTGATAAGTTTTTAAA	TGAAGTTGGGATGACCATAGCTGCAAGAGTTAAGCA
ATTGAATATCAACTGATAAGTTTTTAAA	TGAAGGAACTAAAATAGTAGGGAGAAATCCTAGAAATT
ATTGAATATCAACTGATAAGTTTTTAAA	TAGTTCAAGTTCTCCAGTAAGTATATTGTAGCCTTT
ATTGAATATCAACTTTTAAATGGAGAAG	GGGCAAGGGTGATGATGGATACTAACCCTATTGAATATCAACT
GATAAGTTTTTAAATGCATTAGTTGGTA	AAACTTTAAAATTAACTTCAGTATTGAATATCAACT
CATAAGTTTTTAAACAGATATAGCATGA	TTCCAAGTTATGTAATAACTCATTGAATATCAACT
GATAAGTTTTTAAATACCTTAGAAGAAT	CAAAAATTTTCTTAGTCTCTTTAAATTGAATATCAACT
CATAAGTTTTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483487.1\|SQJ02646.1\|1650880_1651945_-\|Spermidine/putrescine-import-ATP-binding-protein-PotA	unknown	unknown	gnl\|CDD\|226361
LS483487.1\|SQJ02637.1\|1646753_1647005_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ02644.1\|1650448_1650712_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ02655.1\|1657869_1658076_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ02639.1\|1647937_1648585_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ02660.1\|1661327_1663571_+\|4-hydroxybenzoyl-CoA-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236637
LS483487.1\|SQJ02642.1\|1649833_1650190_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|107209
LS483487.1\|SQJ02652.1\|1654832_1655558_-\|Putative-glutamine-amidotransferase-Rv2859c	unknown	unknown	gnl\|CDD\|224982
LS483487.1\|SQJ02638.1\|1647013_1647775_-\|Exodeoxyribonuclease	unknown	unknown	gnl\|CDD\|197321
LS483487.1\|SQJ02656.1\|1658623_1659955_+\|Xanthine-permease-XanQ	unknown	unknown	gnl\|CDD\|274468
LS483487.1\|SQJ02663.1\|1664558_1665329_+\|Sulfate-starvation-induced-protein-7	unknown	unknown	gnl\|CDD\|270217
LS483487.1\|SQJ02654.1\|1657177_1657651_-\|Predicted-HD-superfamily-hydrolase	unknown	unknown	gnl\|CDD\|366867
LS483487.1\|SQJ02658.1\|1660079_1660874_+\|Nicotinate-dehydrogenase-FAD-subunit	unknown	unknown	gnl\|CDD\|224238
LS483487.1\|SQJ02649.1\|1651958_1653641_-\|Molybdenum-transport-system-permease-protein-modB	unknown	unknown	gnl\|CDD\|224099
LS483487.1\|SQJ02640.1\|1648730_1649783_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|176459
LS483487.1\|SQJ02662.1\|1663664_1664231_+\|Xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
LS483487.1\|SQJ02650.1\|1653656_1654679_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270262
LS483487.1\|SQJ02667.1\|1665974_1666628_+\|Arginine-transport-ATP-binding-protein-ArtM	unknown	unknown	gnl\|CDD\|224051
LS483487.1\|SQJ02665.1\|1665346_1665973_+\|Inner-membrane-amino-acid-ABC-transporter-permease-protein-yecS	unknown	unknown	gnl\|CDD\|223836
LS483487.1\|SQJ02659.1\|1660873_1661344_+\|4-hydroxybenzoyl-CoA-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|224991

Protein	Function_ID	Function_description	E-value
LS483487.1\|SQJ02646.1\|1650880_1651945_-\|Spermidine/putrescine-import-ATP-binding-protein-PotA	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.50554e-153
LS483487.1\|SQJ02656.1\|1658623_1659955_+\|Xanthine-permease-XanQ	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	8.43643e-132
LS483487.1\|SQJ02642.1\|1649833_1650190_+\|Uncharacterised-protein	gnl\|CDD\|107209	cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.	0.00439424
LS483487.1\|SQJ02667.1\|1665974_1666628_+\|Arginine-transport-ATP-binding-protein-ArtM	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.63523e-116
LS483487.1\|SQJ02659.1\|1660873_1661344_+\|4-hydroxybenzoyl-CoA-reductase-subunit-gamma	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	7.10683e-48
LS483487.1\|SQJ02652.1\|1654832_1655558_-\|Putative-glutamine-amidotransferase-Rv2859c	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	1.1127e-80
LS483487.1\|SQJ02638.1\|1647013_1647775_-\|Exodeoxyribonuclease	gnl\|CDD\|197321	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases. This subfamily includes human Ape1 (also known as Apex, Hap1, or Ref-1) and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Ape1 and Ape2 in humans. Ape1 is found in this subfamily, it exhibits strong AP-endonuclease activity but shows weak 3'-5' exonuclease and 3'-phosphodiesterase activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	2.15344e-165
LS483487.1\|SQJ02660.1\|1661327_1663571_+\|4-hydroxybenzoyl-CoA-reductase-subunit-alpha	gnl\|CDD\|236637	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional.	0
LS483487.1\|SQJ02663.1\|1664558_1665329_+\|Sulfate-starvation-induced-protein-7	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.02115e-110
LS483487.1\|SQJ02654.1\|1657177_1657651_-\|Predicted-HD-superfamily-hydrolase	gnl\|CDD\|366867	pfam01966, HD, HD domain. HD domains are metal dependent phosphohydrolases.	7.73881e-06
LS483487.1\|SQJ02658.1\|1660079_1660874_+\|Nicotinate-dehydrogenase-FAD-subunit	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.98528e-32
LS483487.1\|SQJ02649.1\|1651958_1653641_-\|Molybdenum-transport-system-permease-protein-modB	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	5.94342e-112
LS483487.1\|SQJ02640.1\|1648730_1649783_+\|DNA-polymerase-IV	gnl\|CDD\|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	1.44976e-127
LS483487.1\|SQJ02650.1\|1653656_1654679_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.62966e-152
LS483487.1\|SQJ02665.1\|1665346_1665973_+\|Inner-membrane-amino-acid-ABC-transporter-permease-protein-yecS	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.44538e-70
LS483487.1\|SQJ02662.1\|1663664_1664231_+\|Xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	5.65613e-103

>LS483487.1|SQJ02652.1|1654832_1655558_-|Putative-glutamine-amidotransferase-Rv2859c
MRPIIGITTFREMREKGEYNSINYGYAEAVLAAGGLPLFIPIVPEGVAKEYLEDYRLDGIIFSGGADVAPRFYGEDPGLQIPGIDTKRDIMEFELLEEAVKRKIPVLGICRGHQLINVAFDGTLYQDIDTQVQSAMGHHPSQISRDELFHSVSIKKESVLHDIFGDEKIYVNSFHHQAVKKLGRGLKATAFSCEGIVEAFETVDMNERFVLGIQWHPENLVNRYNEFLGIFKLLVDRAKEK
>LS483487.1|SQJ02650.1|1653656_1654679_-|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MKRLSTIVATFLLSLTTIFAAGEKETGHLLIYAGLMEDHAIAAVKEFEKETGIKTEFVRMSSGETLARIRAEKDNMTASVWFGGPIDAFVAANEENLVEPYISPVAKDIPDKFKDPNGIWTGIYVGYLGFVGNKEVLEEIGAEMPKSWADLLKPEYKGEIVTAHPGSSGTAFTMLATIIQLKGEKDGMAYMQKLNEQVRQYTKSGTAPGRMVGLGETAIGITFLHDAIKYRKEGYEDIIISAPEEGTGFEIGGVAILKNGPDQASAKKFVDWALSKKAQELGQTVGSYQFLTNQTANAPEDVKEIAGTKLIDYNFDWAGKNRKDLLDKFSTATKTTAPTK
>LS483487.1|SQJ02649.1|1651958_1653641_-|Molybdenum-transport-system-permease-protein-modB
MSNLQLKINTELKNMKKIFNDPILFSTITFILVILIMFILFPMYNILKESFTYKGEFSLIHYKNIKAMQENFIIILNTLKLGVVTSVISTAIGFFFAYGMTYVKLPFRKFFSSIAILPIVSPPFVIALSAILLLGRRGFITRNLLGIRNAEIYGFHGLVLVQVLTFFPVAYLMLVGLLQKIDPSVEEASRDLGASRWDVFRTITFPLMIPGLANAILVIFIQAIADFGNPMVIGGNFTTVAVQIYLQGIGNYDMGSATALAVVLILMSISIFVTQKYYISKKSYVTVTGKVSREREKISEKNITMPIFIVMAFLTFWVFLMYIMIPIGSFVRLWGVKYDFSLEHYKYVFALGMKPIWDTTFLSIISTPITGILAMIIAFLIVRKKFLGKGFIEFITMMAIAIPGTIVGLGYIITFNTKPLVLTGTATILIIAFIMRNMPIGIRSGIAALQQIDPSIEEAATVLGANSKKVFTSVTLPMIKPAFFSGLVYAFVRSMTLVSTIIFLVSAKYNLLTVAIMNQIDVGKIGVASAYCTILIIIVFFVIGIMTYILKKMGIDSISE
>LS483487.1|SQJ02646.1|1650880_1651945_-|Spermidine/putrescine-import-ATP-binding-protein-PotA
MGAKRVKFENINKTFLTGDNRRVQAVADLNLDIKAGEFVCLLGPSGCGKTTILRMLAGFEVPTEGHIYIGDENVERITPDKRDTAMVFQNYALFPHMNVYDNIAYGLKLQKLPKSEVDERVHRILKMMNMEDFAERVPSQMSGGQQQRVSLARALVMEPGVLLFDEPLSNLDAKLRIHMRDEIRKIQQQVGITSIYVTHDQAEAMGLADKVIIMKEGRIQQAGSPIEVYQNPVNEFVANFIGRANIFTGKLVYKTDNKCTIDVYGVRYEVPQKVNHNIGDEIKIVARPESIIISKDDFKGRVTKSMFMGAYHEYEVMFQDLKVEISVSNPRGKKSYALDSELDFSLDVESIHIL
>LS483487.1|SQJ02644.1|1650448_1650712_+|Uncharacterised-protein
MFRSLIIFALTFLLVVFGLEYLMPPFGTIVYLNPVEIVGSITYSIAYVTGMSVKLSMFLAIAFISIIPLIVVIAVNRICKKKKKRRF
>LS483487.1|SQJ02642.1|1649833_1650190_+|Uncharacterised-protein
MNINFKLGSSTGKAGILSIECQKLNIPCVIVVFRNVLNYPNSVQIFKLKSKPKDESAEIKAVEEICKVADKYAITLVMKLALRNRKHLIETFAKFGFKTKKSWLGNCPELIREHHSLD
>LS483487.1|SQJ02640.1|1648730_1649783_+|DNA-polymerase-IV
MKKDRVVLHYDMDSYYASIEIRDNPRLLNKPLVVGGSIVTTASYEARKFGIHSAMKVSDAKKLCPSLLVVPPNKEKYSEISRKIHSLVLRLTHKIEFIALDEGYIDVSDIIDLYPSKEFFAKKFRERIKYHTGLTCSIGIGFNKLSAKLASNINKPSGQYIFTSPLDFTKYISDKNIGIIPGVGKKLSALLAKDSILKVKDIYPYSLAFLCSSYGKSRGELLYSASRGIDYREVEYKKPTHSIGNENTFKYPLNTELEIRREFDDLFEHSYRRLLKDEFISKTVILKIRFSSNETITRSKTLEIPTDSHEKLKKVSDDLLENVDLKDSIRLLGVSFGNLTKKSVRQLAFF
>LS483487.1|SQJ02639.1|1647937_1648585_+|Uncharacterised-protein
MKNLKSIIDTLNSEDENNEVIKEVLEILLAFSNLKISVMEKEIKENLISGTFIGSDFKVPISHILSTYSGQIVKNSENENTIIDNVFASLAEVFYCNKDMIDSIMKNVEKKLIEFIQEEDKEIKFSFLVLENINIVRYDLTFYIKSLKSKKIREKVQSNLSYFVVKSSVNVRQLPFNDFSALCIEVLTKYFGEDQNKIRTNLAEMRDAYSIINLS
>LS483487.1|SQJ02638.1|1647013_1647775_-|Exodeoxyribonuclease
MKLISWNVNGLRAAVQKGFLDYFKNENADIFCVQETKLQEGQIELELEGYHQYWNYAEKKGYSGTAIFTKKKPIEVSYGLGIEEHDKEGRVITLEYDDFYMITVYTPNSQEELARLSYRMSWEDEFRNYVMKLDKLKPVIICGDLNVAHQEIDLKNPKSNRKNAGFSDEERAKFTELLKNGFVDSFRHFYPELTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNETLGSDHCPVVLKLKKEF
>LS483487.1|SQJ02637.1|1646753_1647005_-|Uncharacterised-protein
MASENFAKFCEVWDREQPVPEDRYRFFEIMNCVMIFFLTPEDVKNINEFFKKNGSFDEKRPIHEEIVVDEIHYNGNYMIKIGE
>LS483487.1|SQJ02654.1|1657177_1657651_-|Predicted-HD-superfamily-hydrolase
MDRIEKIRGYIDEVLLNNKNIMERRNGYIHLYGVAQLSVILAKKRNLNQEIAIMAGMLHDIYTYKFEYSKDHGQKGAIMAREILEKLQVATSTEIDIICTAIHNHSNKERIDSEYDELLKDADVLQHCIYNPLILVKNHELKRYNDLLMELDILFNK
>LS483487.1|SQJ02655.1|1657869_1658076_+|Uncharacterised-protein
MTLLKKFKDKKVHIILNTTDKISFDGKIIDEFDNFIEVITDYSQYANHQQHILNKNLILQIYEYKEEY
>LS483487.1|SQJ02656.1|1658623_1659955_+|Xanthine-permease-XanQ
MRNTSPYDLDGIPVLREAIPLGLQHILAMFVSNITPLIIVAGAMKMPSETKTFLIQCTMLVAGVNTLIQAYRIGPIGARLPIVVGTSFAFVPVALSIGSKYGYEGILGAALVGAVFEIFIGAIIKKIRRYFPPVVTGVIVLSIGLSLLPVGVSNFAGGVGAADFGSFPNLFIGMVVLITVIFFKQFTKGITSTGSIFVGTVVGFIVAFFMGKVDLTPVRNAAFMSFPRPFTYGLAFHADACLAMIMMFIVSAVETVGDMSGVTMGGANREVTDKELSGGILADGFGSALASVFSVLPTTSFSQNTGIVAMTGIMSRFVVGTGAAFLVAGAFFPKIGAVLSIVPASVLGGSLVMIFAMISISGINLITKEPLVGRNAVILSVSLGLGYGLGSVPAALKYFPASIQLIFGGSGIVVSGSIAVLLNIILPLDEKVKKTLKGEKVSQ
>LS483487.1|SQJ02658.1|1660079_1660874_+|Nicotinate-dehydrogenase-FAD-subunit
MFSFSKYFPAQSLQEAYDELLKSKKNIILGGTSYLRMENTSYNTAIDLSSLSLDYIKEEGEYIHIGAMVSFREIETNPIILNLFDGILSKSVESIIGVQFRNNVTVGATVFSKYGFSDLIPALLSLDTVVVLFNGGEISLEEYLSTEGKTRDILVEIKIRKAAGKGAFQSIRKSKTDYAITNTAVTNENGNFRIAIGVRPGKAKLAHKAMELLNNSDNITDEVIDRACALITEEITFGSNMRGSSEYRAAISKVMTKRAIKEVL
>LS483487.1|SQJ02659.1|1660873_1661344_+|4-hydroxybenzoyl-CoA-reductase-subunit-gamma
MLLTLTVNGLKRELLISEDEYLLDTLRKAGYLSVKRGCDTGSCGLCTVLVDDKPVLSCSTLAARMNNKKITTIEGCQEEAAKFANFMADEGAEQCGYCAPGFTLTVLAMMKEYKNPTDEEILHYLNGNLCRCSGYVSQLRAIKNFMEAEKSNENSK
>LS483487.1|SQJ02660.1|1661327_1663571_+|4-hydroxybenzoyl-CoA-reductase-subunit-alpha
MKIVNKSIKKIDSIGVITGRPLYTDDLVINSNSLIVKLLRSPHAYAKIIEIDTSIAKKVPGVEAVYTHHDVPNTMFTLAGQSYPEPSPYDRKILSEYVRYVGDPVAIIAAVDEKTAEKAMKLIKVKYEVLEAVVDYEKALDSDILVHPEDVHINFPIGFDNKRNLASSYLETKGDVEKGFEESDVIIEKTYYTQPQIHAMMETYRTACYLDAHGRLTVVSSTQIPFHVRRHLARALEMPSSRIRVIKPKIGGGFGGKQTSVCEIYPAFVTMKTGKPSKIIYSRKETQAYSNTRHAMRLKVKIGSDKEGNIKAIDINVLSNTGAYGEHAPTVTSLVVYKTFPLYAKVPMRCKADIVYSNTMVGAAFRGYGATQGTFAVESAVNELAHKLGIDPTEIRMKNLVDHSDKVSGDIKKCISIGKEAFDWENRTVKDMGNGKVRASGMAVTMQGSGIANVDTASATLKLHDSGDYTLYMGVTDMGQGCDTVLAQMASEILEVPVEKIIVNTADTDTSPYDPGAYASSGTYVTGNAVILAAEKMKKEIMDMASKLMNTSVEELEYLGESVQDKNGNKLSLRDIGERAVSFEGKNQIITTATWGGATSPPPFIASFAEVEVDTLTGNTEVIDFLSVVDCGTPINPALAQVQVEGGIAQGIGLALYEDIQFDEKGKVKHDTLMQYKIPSRKDLGNINVIFSYSNEPTGPFGAKSIGEVVINTASPAIADAIYNATKARVRSLPITSEKLFWEIQSK
>LS483487.1|SQJ02662.1|1663664_1664231_+|Xanthine-phosphoribosyltransferase
MKLLKEYIEKNGKAIGTNILKVDSFLNHQIDPNLMMAMGEEFKRRFEDQGVNKILTIEASGIAIGLAAAYAFNVPLVFAKKKIPSTMGDFYTANVFSFTKNKDYTICVAKEFLKPTDRVLIVDDFLAMGNAVLGLKSLVESAGAEVIGAGIAVEKGFQQGEKLLIDNGVKVEALAVVDSLENGVIKFR
>LS483487.1|SQJ02663.1|1664558_1665329_+|Sulfate-starvation-induced-protein-7
MKKLFMAVLVIMILASVSLFAADGSLEKVKKDGYFTVGLDATFAPMGFRDENEEIVGFDIDLAKEVAKRMGVEAKFKPCEWDGIIFDLRSKNIDMVWNGMTITEQRSKQAAFTTPYLVDGQIIFSRKGNEINKVSELEGKVVGVQLGSSGSQAVERNAIAPKLKEIKKYATNVEALLDLEAGRTDAVVMDAISGKYYNAKKNTLSFSEESLSDEYFAVALRKDDKALLDEINRLLDEMKKDGTFDQISLKWLGTTK
>LS483487.1|SQJ02665.1|1665346_1665973_+|Inner-membrane-amino-acid-ABC-transporter-permease-protein-yecS
MDGNVIFILKGMKLTVNLYVVTMLFSLPLGILLSLGRVSKNTTLSNMIQVYTWVFRGTPLLLQLFFVYYGLPVVGITLTPFAAASLTFVINYTAYFCEIFRGSILGIDPGQYEAAKVLGMKYWQTMIRIIIPQALITALPPLSNEAISLIKDTSLVSAIGMAEILRNSRELVTRDFSITPFFICAVVYLGLSTIVVIFFKRMEKKVMI
>LS483487.1|SQJ02667.1|1665974_1666628_+|Arginine-transport-ATP-binding-protein-ArtM
MIIKVNDLSKQYLEGDVILKGVNLDIEKGEVVSIIGPSGGGKSTLLRCLIGLEEIDSGNIEVPDKKKMGMVFQSFNLFPHKTAIQNIMESLIVVDKMDKSEAKKIAYDLLEKVGLKDRADFYPKALSGGQKQRVAIARALARNPEVLLFDEPTSALDPDMVKEVLNVIEQLRESSNITMVIVSHEIDFVNQISDRIVVMENGNIKNIIVNKKKRQVS

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Crispr_ID: LS483487_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483487_7

2206702-2206929

Orphan

Consensus_repeat	Method
ATTTAAAAACTTATCAAGTTACTAGTCAAT	CRISPRCasFinder
ATTTAAAAACTTATCAAGTTACTAGTCAATNTN	CRT
AGCACCACTTAATTTAAAAACTTATCAAGTTACTAGTCAATTT	PILER-CR

3 spacers

The CRISPR arrays of LS483487_7

>merge|LS483487|7|2206702-2206929|CRISPRCasFinder,CRT,PILER-CR
TTTTAAAAAACTTATAAGTTACTAGTCAATCTTAAAATTTATAAAATACCATTAAATAAACCTGTATTTAAAAACTTATCAAGTTACTAGTCAATTTTGTATTAGCTAACAGATGGGGAAGAGCAGCATTTGATTTAAAAACTTATCAAGTTACTAGTCAATTTATCTACTGCTTTTATCTTTTCAGCACCACTTAATTTAAAAACTTATCAAGTTACTAGTCAATAT

>LS483487|7|7|2206702-2206927|CRISPRCasFinder
TTTTAAAAAACTTATAAGTTACTAGTCAAT	CTTAAAATTTATAAAATACCATTAAATAAACCTGT
ATTTAAAAACTTATCAAGTTACTAGTCAAT	TTTGTATTAGCTAACAGATGGGGAAGAGCAGCATTTG
ATTTAAAAACTTATCAAGTTACTAGTCAAT	TTATCTACTGCTTTTATCTTTTCAGCACCACTTA
ATTTAAAAACTTATCAAGTTACTAGTCAAT

>LS483487|7|4|2206703-2206929|CRT
TTTAAAAAACTTATAAGTTACTAGTCAATCTT	AAAATTTATAAAATACCATTAAATAAACCTGT
ATTTAAAAACTTATCAAGTTACTAGTCAATTT	TGTATTAGCTAACAGATGGGGAAGAGCAGCATTTG
ATTTAAAAACTTATCAAGTTACTAGTCAATTT	ATCTACTGCTTTTATCTTTTCAGCACCACTTA
ATTTAAAAACTTATCAAGTTACTAGTCAATAT

>LS483487|7|5|2206767-2206929|PILER-CR
ATTTAAAAACTTATCAAGTTACTAGTCAATTTTGTATTAGCTA	ACAGATGGGGAAGAGCAGCATTTG
ATTTAAAAACTTATCAAGTTACTAGTCAATTTATCTACTGCTT	TTATCTTTTCAGCACCACTTA
ATTTAAAAACTTATCAAGTTACTAGTCAATAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483487.1\|SQJ06855.1\|2208916_2209174_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ06852.1\|2203482_2206065_-\|Outer-membrane-protein-IcsA-autotransporter-precursor	unknown	unknown	gnl\|CDD\|237940
LS483487.1\|SQJ06843.1\|2192553_2194107_+\|Aminobenzoyl-glutamate-transport-protein	unknown	unknown	gnl\|CDD\|225525
LS483487.1\|SQJ06861.1\|2216259_2217366_+\|Purine-catabolism-protein-PucG	unknown	unknown	gnl\|CDD\|223153
LS483487.1\|SQJ06858.1\|2210824_2211541_+\|Phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|319796
LS483487.1\|SQJ06857.1\|2209844_2210669_-\|Endonuclease/Exonuclease/phosphatase-family	unknown	unknown	gnl\|CDD\|197338
LS483487.1\|SQJ06851.1\|2202013_2203216_+\|Glycine-betaine/L-proline-transport-ATP-binding-protein-ProV	unknown	unknown	gnl\|CDD\|226643
LS483487.1\|SQJ06844.1\|2194224_2195109_+\|Predicted-permease,-DMT-superfamily	unknown	unknown	gnl\|CDD\|307170
LS483487.1\|SQJ06850.1\|2201150_2202014_+\|Glycine-betaine/L-proline-transport-system-permease-protein-proW	unknown	unknown	gnl\|CDD\|226644
LS483487.1\|SQJ06846.1\|2195569_2196883_+\|Putative-Mg2+-and-Co2+-transporter-CorB	unknown	unknown	gnl\|CDD\|224173
LS483487.1\|SQJ06845.1\|2195118_2195484_+\|Uncharacterized-conserved-protein	unknown	unknown	gnl\|CDD\|226131
LS483487.1\|SQJ06854.1\|2208475_2208853_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|227783
LS483487.1\|SQJ06853.1\|2207147_2208410_-\|Uracil-transporter	unknown	unknown	gnl\|CDD\|225142
LS483487.1\|SQJ06847.1\|2196902_2197826_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|379245
LS483487.1\|SQJ06856.1\|2209196_2209829_-\|Thiamine-pyrophosphokinase	unknown	unknown	gnl\|CDD\|153431
LS483487.1\|SQJ06848.1\|2198011_2200012_-\|Oligoendopeptidase-F,-plasmid	unknown	unknown	gnl\|CDD\|341071
LS483487.1\|SQJ06860.1\|2211964_2216194_+\|2-hydroxyglutaryl-CoA-dehydratase-component-A	unknown	unknown	gnl\|CDD\|224835
LS483487.1\|SQJ06862.1\|2217511_2218240_+\|HTH-type-transcriptional-repressor-yvoA	unknown	unknown	gnl\|CDD\|225099
LS483487.1\|SQJ06849.1\|2200174_2201134_+\|glycine-betaine-transporter-periplasmic-subunit	unknown	unknown	gnl\|CDD\|270359
LS483487.1\|SQJ06859.1\|2211567_2211906_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LS483487.1\|SQJ06852.1\|2203482_2206065_-\|Outer-membrane-protein-IcsA-autotransporter-precursor	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	3.3608e-154
LS483487.1\|SQJ06843.1\|2192553_2194107_+\|Aminobenzoyl-glutamate-transport-protein	gnl\|CDD\|225525	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism].	0
LS483487.1\|SQJ06861.1\|2216259_2217366_+\|Purine-catabolism-protein-PucG	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	1.0601e-127
LS483487.1\|SQJ06858.1\|2210824_2211541_+\|Phosphoserine-phosphatase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.65925e-49
LS483487.1\|SQJ06857.1\|2209844_2210669_-\|Endonuclease/Exonuclease/phosphatase-family	gnl\|CDD\|197338	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like. This subfamily includes Mycoplasma pulmonis MnuA, a membrane-associated nuclease related to Deoxyribonuclease 1 (DNase1 or DNase I, EC 3.1.21.1). The in vivo role of MnuA is as yet undetermined. This subfamily belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	2.0538e-46
LS483487.1\|SQJ06851.1\|2202013_2203216_+\|Glycine-betaine/L-proline-transport-ATP-binding-protein-ProV	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	1.83681e-159
LS483487.1\|SQJ06844.1\|2194224_2195109_+\|Predicted-permease,-DMT-superfamily	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	3.03157e-08
LS483487.1\|SQJ06850.1\|2201150_2202014_+\|Glycine-betaine/L-proline-transport-system-permease-protein-proW	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	3.91253e-103
LS483487.1\|SQJ06846.1\|2195569_2196883_+\|Putative-Mg2+-and-Co2+-transporter-CorB	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.51672e-126
LS483487.1\|SQJ06845.1\|2195118_2195484_+\|Uncharacterized-conserved-protein	gnl\|CDD\|226131	COG3603, COG3603, Uncharacterized conserved protein [Function unknown].	1.60931e-31
LS483487.1\|SQJ06854.1\|2208475_2208853_-\|Uncharacterised-protein	gnl\|CDD\|227783	COG5496, COG5496, Predicted thioesterase [General function prediction only].	2.49433e-40
LS483487.1\|SQJ06853.1\|2207147_2208410_-\|Uracil-transporter	gnl\|CDD\|225142	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism].	4.99558e-112
LS483487.1\|SQJ06847.1\|2196902_2197826_+\|Uncharacterised-protein	gnl\|CDD\|379245	pfam13536, EmrE, Putative multidrug resistance efflux transporter. This is a membrane protein family whose members are purported to be related to the DMT or Drug/Metabolite Transporter (DMT) Superfamily. Members are all uncharacterized.	5.03483e-124
LS483487.1\|SQJ06856.1\|2209196_2209829_-\|Thiamine-pyrophosphokinase	gnl\|CDD\|153431	cd07995, TPK, Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.	8.40275e-67
LS483487.1\|SQJ06848.1\|2198011_2200012_-\|Oligoendopeptidase-F,-plasmid	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
LS483487.1\|SQJ06860.1\|2211964_2216194_+\|2-hydroxyglutaryl-CoA-dehydratase-component-A	gnl\|CDD\|224835	COG1924, COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism].	1.69385e-140
LS483487.1\|SQJ06862.1\|2217511_2218240_+\|HTH-type-transcriptional-repressor-yvoA	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	9.12866e-68
LS483487.1\|SQJ06849.1\|2200174_2201134_+\|glycine-betaine-transporter-periplasmic-subunit	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.2881e-124

>LS483487.1|SQJ06852.1|2203482_2206065_-|Outer-membrane-protein-IcsA-autotransporter-precursor
MKKRIFWGQLIAALLYIGNTTFSQTIWTDADFTTPKGHTWVNSGNWDYGGDVHIQNVNEVIFESNMSGKPGTGVLSIETGGKLTADGMVIVNQLGPTTGDAVLVTDGGKAYFNGGLTANIMNSNNDYYAIGVIRGNSQLHVKGDTNINANFEKGYGLYLGEGTTNSFSKNDSGNGSVNIYAGKIGIYSLGNTDFNQDVNISLNSNGATGIISNTTNTLSTTNFNGFVTVENNSISDNTSTAYGVAVSNANGILNLNAGGKIVFGDNYTNGNEIGIYANKGIINITGDLTVQSNSGGIQAVFYTTNGGRITAVDSVMDLKGNMYANNSSEITVAMNSGSLWEGASYIGNGSTVDIKMTGSKWKMTEDSTVTNLDILSGTTVYLNAAPDYSNFIGRTLTITENYHGNGGTIVFNTQLEDDNSVTDKMIVEGDTSGTTKVRVNNMGGQGAHTENGIELISILGISDGEFVKDGRIVAGAYEYFLNRGDGITTDSNNWYLTSTIPSIIPPPVTPPDTEDPIDPEILDPPLGPELPNVIEPIYRPESGSYLANARAVNSLFVHTLHDRLGETQYTDALKNGEQVSSIWVRNVGGYGTFRDGSNQLKTRNKKNVIQVGGDIADWSSNENNRYHLGIMAGYGFNHSKTESNKTSYTSKGETEGFNLGVYGTYYANENDKSGFYADTWLTYSWFDNEVRGDELEKEKYKSQGITASLESGYSFKIKSDDSDRKTYYIQPKAQIIYMGVDTDDHTEANGTKVETKGDGNIQTRIGARVYVNHFNPADRDNSKEIQPFVEANWIHNSKDVNVSMDDINNKIKGTKDIGEVKVGTEVKLNPSFNVWGNVSHQWGGSGYRDTKVTIGIKYSF
>LS483487.1|SQJ06851.1|2202013_2203216_+|Glycine-betaine/L-proline-transport-ATP-binding-protein-ProV
MSKNIENDAHDEKYILSVKNLTKLYGLNKNEAVKMLKAGAEKSEVFKKTGVTSAIWDMSFDVKQGEIFVIIGLSGSGKSTVIRCLNRLHNPTSGNILFDGKEISKFSQKELIDFRRNKISMVFQNFGLMSHRDVISNIEYGLEIKGISKEEREKKAMEVLKMVGLEGLEHESINSLSGGMKQRVGIARALANDPEILLMDEPFSALDPLVRSDMQFELLSIQKKLKKTIIFITHDINEAFKLGDKVAIMKDSRLIQLDTPENMSANPADDYVRQFIDSADKTKVISVKQIMFNPSCIIRLKEGAGIAIREMKSNRVSSAYVIDNHMKFLGIITIDSALKCRNENGFLSDYIIGEIPTTSSDTLINDILPIAVNTKFPIAVIDDGELMGIVSKASILSTLI
>LS483487.1|SQJ06850.1|2201150_2202014_+|Glycine-betaine/L-proline-transport-system-permease-protein-proW
MDWIFNFPFKLNIDVALIDRTVKNFSIQFSGFFNVIKNILNGLIGGILTILNFIPWWVLVLLVFFAGWKLTGKLRNGILYSCMLFFIGVIGLWDLMNDTLSIVLAAVFISLLLGFPIGILISGNERINSFVRPILDTMQTMPVFVYLIPAVLFFGLGKAPAVIATTIYAIVPVIRLTSHGIRQVDKEVVEAARAFGSTKFQALWKVQIPQALPTIMTGVNQTLMMAMAMVVTCSMIGASGLGMEVLIGVNRIEIGRGLVAGTAVVIVAILMDRITQAWINRSEVKKK
>LS483487.1|SQJ06849.1|2200174_2201134_+|glycine-betaine-transporter-periplasmic-subunit
MKKKIFTFIITGFLTLAFLGCGGNDKKEVRFADAGWDSNKVHNAVAGFIIENAFGYTWSEVPGSTPILHEAIKSGEIDVHMEEWTDNIPSYYPDLKAGLFQELGTNFDDNRQGIYVPKYVIETMAPDLKSVKDLPKYKELFKDSENPEKGRIYGAIPGWEIDNIMYKKYEAYELNKDFVYFRPGSDAALSAAFTAAYEKKEPIVGYYWEPTWLLGKYDFVLLEDEPYDAEKYFEGKTACPSVKVTIGASNKFKEKAPEIAAFLSKYHTSSKLTSEALAHMQETGDNYNATAKWLLKNNDNLIDQWLDADKAAAVRKALN
>LS483487.1|SQJ06848.1|2198011_2200012_-|Oligoendopeptidase-F,-plasmid
MILGVRTIKKIFVIGFLAALIGAKFYFQNEGKGKENHNKEDIKIEKQEEVKGEKMEKKILKREDIDKKYKWNLEEYYPSWEVWDRELAQTRELMKKVPEYKGKIKYSSEKFTEMIQLEEKIGRTIEKLYIYPYMLKDINSKDETASVKLQEIMSILTEYSVATSWMTPEILEIPQETMEKWIEKNPVLKEHKFSLMEIYRLQGHVLDEGKEKLLSYYGQYMGAPDDIYGELSISDMKWNEVELSDGYKGPVTNGIYSKVLATNRNQEDRKKAFEALYGSYDANKNTYAAIYRSLLQRDAASSKARNYKSTLDKALEPKNVPSEVFETLLKSAIDNNAPLQRYVKLRQKALGLEGYHYYDNSINIVDYNKEFSYDTAREMVLNSVAPLGQDYSEKMNKALSEGWIDVYETENKRSGAYSIGIYDVHPYMLLNYQSTMDDVFTLAHELGHTMHTILSNENQPYASSNYTIFVAEVASTFNERLMLDYMIKNSEDPKEKIALLEQALGNIVGTFYIQTLFANYEYQAHKLVEEGKAVTPDVLSGIMDNLFKQYFGETLTMDELQKIVWARIPHFYNSPYYVYQYATSFASSANLYDRITNEKYGMEERGAATSAYLELLKSGGNDHPMNQLKKAGVDLEKEESFHAVAKEFDRLLDQLESELEKLENNK
>LS483487.1|SQJ06847.1|2196902_2197826_+|Uncharacterised-protein
MKKALLFGIGASFFFSFTFVLNRQMNIGGGNWYWSSSLRYLFMLPILFCIVATKKQLSPVIEDIKKNPVSWFIWSTVGFGFFYAPLSFASAYGASWLVAGTWQLTIIAGALMSPFFYTIVDGEKIRSHIPKKFLLVSLVILTGIFLMLSEEAKKISIIDSLFVVVPVLFAAFSYPLGNRKMMELCSSRLNTLQRVFGMTLCSIPFWIIIVIFGFVQTGPPGHNQLIQSFIVAVSSGVIATIMFFKATDMVKGDTHKLAVVESTQVGELIFTLLGGVLVFHDTIPTTLGIVGIILVAVGMMVNSFIQE
>LS483487.1|SQJ06846.1|2195569_2196883_+|Putative-Mg2+-and-Co2+-transporter-CorB
MDETPGTTNVISQLLFLLILTIANAFFAGAEMATVSVNKNKIKMLAENGNKNAQLLQELLKEPTKFLSTIQVAITLSGFLASASAATSFSAPLDILMTKLGIPYGETIAIIIVTVVLSFFTLVFGELVPKRIALQKAEAISLFTVKPVLFISRLTSPFIKLLSFSTGLVLQVLGMKAENLEENISKEEIKSMVEAGQANGVFNETEKEMINSIFEFDDILASEIMIPRTDVYSIDIDASIGEYLDELLETKHSRIPVFEGDIDNIIGVLYIKDLILEARNKGFENVDIRSILRKPYLVPESKNIDTLFKEMQKSKKYIAILIDEYGGFSGIVTMEDLVEEVMGNIDDEYDDNEPKLEKIDNHIYLVDGLYPVDELIDILNIDIVSKNHNTISGYLIDTLGEIPDNSYLDKEIKINNTIFKIKSIKENRIDKIELILK
>LS483487.1|SQJ06845.1|2195118_2195484_+|Uncharacterized-conserved-protein
MNLRILSTDFSICKIKNLKDVNFEDEFVFIGKTDEEISLVCSEKYVPQEYIECDNGWKGFRIEGVLDFSLVGILAKISGILAENEISIFAVSTYNTDYILLKADKFDKAVEILKKADYIFK
>LS483487.1|SQJ06844.1|2194224_2195109_+|Predicted-permease,-DMT-superfamily
MNYLGELYALITAFGWTFSSIFFEAASKKADSITVNVIRLIMGIIMLGSATFLSRGVFFPTDSTLHNWTFLSISGIIGLFLGDMFLYESYILIGARICMLFMTMTSLIVGLFGFLFLGESLTLVQTIAMFITCSGVLMVVLKPKSENPEDKKLSPKGIAFITTAVILEALGNIFTKIGAKGYDPSSSTQIRMICAMGVFLFYLTFKKKWGKIFISFTDKKLLGLILLGTVTATVGITFLISAFNLINAGVASTFSSISPIIVIPISIIVFKEKVKIREIAGAFVSVIGIALFFL
>LS483487.1|SQJ06843.1|2192553_2194107_+|Aminobenzoyl-glutamate-transport-protein
MSQMKQEKKGFFNKFLDFIEVGGNKLPHPVTLFVLFCLTIIIVSGITEKMGVSATYNALNKKTGNFEQITVTVKSLTNAAGIRYIFNSMVKNFTGFAPLGTVLVGIIGIGVCEGSGLMSSTIKKVVMGTPRRAITAIVVFAGVMSNVASDAGYVVLVPLGAVIFLSFGRHPLAGLAAAFAGVSGGFSANLLLGTTDPLLGGITTEAARLIRPDYFVAATANYYFMFVSTFIITALGTIITEKIVEPRLGPYHGDVDHDMKELTDLERKGLRAAGLVVLAYLAVMLFLTLPANAVLKVDGSLKAWTSSGLIPAMMFFFLLPGLAYGFTAKTLKSDKDVAKLMGKALAGMGGYMALAFTASQFIAYFGYTNLGTILAVKGADTLKSIGFTGLPLILGFVLFTAFINLFMGSASAKWAIMAPVFVPMLMELNYSPEFTQAAYRIGDSSTNIISPLMSYFAMIVAFMQKYDKDSGMGTLISMMLPFSICFLLGWTILLAIWFAFGLPIGPGVFIEFSKMLG
>LS483487.1|SQJ06853.1|2207147_2208410_-|Uracil-transporter
MDNSMEKIGSKTKLLLGAQHVLAMFGATVLVPFLTGLNPSIALIAAGAGTLIFHFCTKRIVPVFLGSSFAFIGALSLVLKDEGIGAVKGGVIAAGFIYLLMAYLVKVFGVEKIKSFFPPVVTGPIIMVIGLRMSPVALSMAGYANGKFDPKSLIIALVVIISMISITIMKKSFFRLVPILISVTLGYVVAMFMGLVSFEPIAKANWIGLSAEAANDLFTLPHFSVSAVLAIAPIALVVFIEHIGDITTNGAVVGKDFFKNPGIHRTLMGDGVATIVAGLLGGPANTTYGENTGVLAVTKVYDPSILRIAACYAIVLGLLGKFGVILQTIPAPVMGGVSIILFGMISSVGARTLVDAGLDFSNSRNLIIASLIFVFGIAVDNIVIWKTVSLSGLALAALAGVVLNKVLPLDREVAINKKID
>LS483487.1|SQJ06854.1|2208475_2208853_-|Uncharacterised-protein
MLKEGMSLTLEKIVNENETAAKIASGALNVFATPILIAFMENASFELVQKELPAGETTVGISVDIKHLKANLVGDKIKCVSVLEKIDGKKLDFSVKVYHGDTLVGEGKHGRFIVNEEKFLSKLKG
>LS483487.1|SQJ06855.1|2208916_2209174_-|Uncharacterised-protein
MLKVWIVIGISLLIIAAYVGILLASSTKESDDKYVVGILKTGYKVFEYFNRKKNNLGVYFSYAILWVGYMVLNGRKPKLKKDTMK
>LS483487.1|SQJ06856.1|2209196_2209829_-|Thiamine-pyrophosphokinase
MKTAYVFFNGQLEGSREFYIKLLAKEKGDIYCADGGANHLETLGILPLEIWGDLDSVTKEIIEKYRNNKVTIKKFPKDKDYTDGELILQHISKMDYDKITIIGGLGGRIDHLLTNLNLIFKFKNLMFVTEKEKIFSIEKKAELTELNGKTISFVPFSEKVEGLTLEGFKYPLNKYTLHQGDSICMSNVAVEDRCRVTFDTGKLMGIVLNG
>LS483487.1|SQJ06857.1|2209844_2210669_-|Endonuclease/Exonuclease/phosphatase-family
MKKIKLVFIYFLLAMTIFAQEGYIASFNTLRLGKSQKDYILTAQALEMFDIAGLIEVMDAEGVEKLINALEKVSGEKWDYHISPYPVGKNSYKEYFAYVWKKDKVEFLKERGFYKDTEEKFARPPYGADFKIGEFDFTFVLVHSVFGKNESARRAEAFKMNEVYDYFQNLDLKENDVIIAGDFNLSGFDESFEKLLSHPDKIIYALSPVIKTTLGKKSLASSYDNMFLSTIYTKEFTGKSGALDFTQGQYRLMKDKISDHLPIFIVVKISEDDD
>LS483487.1|SQJ06858.1|2210824_2211541_+|Phosphoserine-phosphatase
MIAAFFDIDGTIYRNSLLTEHFKKLIKYELLDFREYDTRVKEAFKLWDERVGDYDKYLLGLTQTYVDAIKGLSTKYNDFVADQVVELKGNRVYSYTRRMIKWHKEQGHKVIFISGSPDFLVSRMAKKWKADDFCGSVYHIKDGVLSGKISPMWDSENKMKSIHMFCQKYGIDLMKSYAYGDTHGDYSMLLSVGHPRAINPSLELLNSIRESDYLKKNTEIIIERKDIIYKVHSDVETL
>LS483487.1|SQJ06859.1|2211567_2211906_+|Uncharacterised-protein
MTVRLFYFIISFMFMFFTSNFDIQEKHSAFKDLPQNILLLGKIESSREYSFIKIDKIELADRTNLKNPIPAFLEMTEIVTEEPCINTVIYPQKDSLTFYTILERYGSRILLI
>LS483487.1|SQJ06860.1|2211964_2216194_+|2-hydroxyglutaryl-CoA-dehydratase-component-A
MREFHIGMDVGSTTIKIVCLDEKDNIIYSIYQRHLSNVRETTKKMFDEFLEHIKSNFGEDIRYRISITGSSGMGISSWIGIDFVQEVIACIKSIETLIPETDVAIELGGEDAKITFLKNDMDQRMNGSCAGGTGAFIDQIATLLDTDASGLNELAKGFDSIYPIAARCGVFAKTDIQPLINEGVKKENIAVSVLQAVVNQTITGLACGKKITGKVAFLGGPLFFLSELRNRFIDTLKLTPEDVVFPENSQLFVAQGAAFLAKENESVFSYDELKTKIERLNEKDTSDTSRLQPLFENEDALNEFLERHEKEKIETRDLSTYEGNAYLGIDAGSTTIKVVLISEEKEILFSHYSHNKGNPLDNIIATLKNLYSKMSEKVIIKGSCVTGYGESLIKAALRVDIGIVETMAHYKGSQFFQPNVDFILDIGGQDMKCLKIQDGIITSILLNEACSSGCGSFLETFAHSLGMDILEFSRLGMESKSPADLGTRCTVFMNSKVKQAQKDGVEVSDISAGLSYSVVKNTLFKVIKIKNKDELGKNIVVQGGTFLNNSVLRAFELVSERNVIRPNVAGLMGAFGAALIAMEQAEESSTIMTLDELNNFNCTTNLTRCKLCNNHCLLTIHKFKNGETFISGNRCDNPLGKMKKNTAPNMFDYKYNRLFNYTPLEPSKATRGEIGVPRVLNFYDSYPFWFTLLTHLGFRVIISDDSSKKLYEKGIDTISSDSICYPAKLVHGHIVDLIEKGVKRIFYPCVIFEEKEDIKSSNQFNCPIVMSYPEVINNNMDILKEKHIDLILPFFSFESKEVLYKTVFEEFERFGITKSEAKMAVDAAWEEKYNFRKDMRNKALEIIADLERTGKTGVVLCGRPYHCDKEIHHGIPNIINSFGIAVLTGDAVASLASLDEELRVIDQWTYHSRLYRAAAYVGKSSCLELIELNSFSCGIDAVTTDQVEEILANHGKVHTLLKIDEISNLGSVKIRIRSLLAALDYKKNALRSSLKKKIEYKKAQFTKKMKKEYTILAPQMAPMHFKLLKTAFKAEGYNLEVLEETQEALDCGLQYVNNDACYPSILVIGELIAALKSGKYDLDKTAVMISQTGGSCRATNYVGFLKKAIRDSGFEKIPILSLNASGFEKQEGFSITLPFAHKCLIAVSYGDILMKLLYHVRPYEKIKGSALELYEKWNEKVKENIANGKFSQFKSNINAIVEDFSKIEVSDEKKIKVGIVGEILVKFSPFANNNLADFIEAEGGEVYTSSLMSFVKYCIYSDIFITERFKGKIAAMKLKAALWVIDQYTKVLNNALQKNPRFGHEDSIQDLAKKTSQYISIGNQSGEGWFLMGEMIEFIEKDVPNIVCVQPFGCLPNHITGKGMIKKLRSEYSNVNIAPIDYDPAYSEVNQLNRIKLMLSVARKNLKNS
>LS483487.1|SQJ06861.1|2216259_2217366_+|Purine-catabolism-protein-PucG
MYKANYLMMTPGPTMVRENVLKARCSFFGNPDLDPNFFAFYEELCKKTGKLFGAKKAQTIIMNGEGMLGLDTACASLTEPGDKVLVISNGIFGEGFKGLVETYGGEVTLFETDVKKALDIDKLRIFLEKNKDFKYATMVHCDTPSGVLNNVEVICKILKSEGIMTVVDSVAAVGGVQLEVDEWGIDIALGGSQKVFSAPSGITIMTVSNDAWEAIENRKTPIASFYCNLSLWKNSVKEQLFPYTMPASDLMAFDVAIDNIYKEGVEKVRERHYTAAEYVRTRLMDMGVDLYLKNGYSPTVTAFCLPEGYNCKEVSDYLLHNFEVMIADSYSYLSNKVLRIGHMGENARFYRLDYTLKAIEKTLRVLKK
>LS483487.1|SQJ06862.1|2217511_2218240_+|HTH-type-transcriptional-repressor-yvoA
MCDFDKNNKMPLYGQLMNFLLSEIECDKFKEHEKIPSERDLCDKFNLSRDTVRQAIFQLEKMGYIYKKHGKGTFVAQKQLKPDLYKFYDFTEEMKKLGKEAVSKVLSFEIIPADKYISKALKIKENSNVHRITRLRLVDSIPLIFEKAYLSTEKFDFFSIDELSNSSLCNILKNRFSVKFSKGEETFYPITPDDEITRYLNLMKFQPVIKIERTTFEDEIPVMFTERIIRGDKFKYTITTSF

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Crispr_ID: LS483487_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483487_8

2420214-2420362

TypeVI-C

Consensus_repeat	Method
AAGAGTTTAAATTCCACTTATGTGGATTTAGTCC	PILER-CR

2 spacers

cas13c

The CRISPR arrays of LS483487_8

>merge|LS483487|8|2420214-2420362|PILER-CR
TTATGTGGATTTAGTCAGGAACTTATGAATTATAGACTTGAACAACTTAAAGAGTTTAAATTCCACTTATGTGGATTTAGTCCAAAGTGAATCAGGAATGAAAATAAAAAATGATAATAGTTTAAATTCCACTTATGTGGATTTAGTCC

>LS483487|8|6|2420214-2420362|PILER-CR
TTATGTGGATTTAGTCAGGAACTTATGAATTATA	GACTTGAACAACTTAAAGAGTTTAAATTCCACT
TATGTGGATTTAGTCCAAAGTGAATCAGGAATGA	AAATAAAAAATGATAATAGTTTAAATTCCACT
TATGTGGATTTAGTCC

Protein	Signature genes	Signature genes Name	Protein_function
LS483487.1\|SQJ09289.1\|2413578_2414184_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|226144
LS483487.1\|SQJ09362.1\|2417503_2418361_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09311.1\|2416448_2416688_-\|DNA-binding-domain,-excisionase-family	unknown	unknown	gnl\|CDD\|378935
LS483487.1\|SQJ09401.1\|2428614_2429685_-\|Putative-aminopeptidase-ysdC	unknown	unknown	gnl\|CDD\|349906
LS483487.1\|SQJ09286.1\|2412177_2412588_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09290.1\|2414550_2415168_+\|LexA-repressor	unknown	unknown	gnl\|CDD\|224885
LS483487.1\|SQJ09478.1\|2432784_2433387_+\|Membrane-protein-of-uncharacterised-function-(DUF340)	unknown	unknown	gnl\|CDD\|377175
LS483487.1\|SQJ09472.1\|2432509_2432785_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09360.1\|2416710_2417517_-\|DNA-replication-protein-dnaC	unknown	unknown	gnl\|CDD\|236153
LS483487.1\|SQJ09436.1\|2431442_2432495_+\|Aldose-1-epimerase-precursor	unknown	unknown	gnl\|CDD\|185696
LS483487.1\|SQJ09287.1\|2412575_2412695_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09384.1\|2420642_2423996_-\|Uncharacterised-protein	cas13c	cas13c_CAS-VI-C	unknown
LS483487.1\|SQJ09292.1\|2415773_2416040_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09408.1\|2429714_2431241_-\|Dipeptide-binding-protein	unknown	unknown	gnl\|CDD\|173864
LS483487.1\|SQJ09395.1\|2426187_2427897_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09387.1\|2424719_2425532_-\|Multidrug-efflux-transporter-1-regulator	unknown	unknown	gnl\|CDD\|133382
LS483487.1\|SQJ09288.1\|2412796_2413582_-\|site-specific-tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|338776
LS483487.1\|SQJ09391.1\|2425601_2425763_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09399.1\|2428027_2428495_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09370.1\|2419448_2419949_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372841

Protein	Function_ID	Function_description	E-value
LS483487.1\|SQJ09289.1\|2413578_2414184_-\|Uncharacterised-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	5.20591e-06
LS483487.1\|SQJ09436.1\|2431442_2432495_+\|Aldose-1-epimerase-precursor	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	7.54268e-125
LS483487.1\|SQJ09311.1\|2416448_2416688_-\|DNA-binding-domain,-excisionase-family	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.63385e-05
LS483487.1\|SQJ09288.1\|2412796_2413582_-\|site-specific-tyrosine-recombinase-XerC	gnl\|CDD\|338776	pfam13495, Phage_int_SAM_4, Phage integrase, N-terminal SAM-like domain.	9.58403e-08
LS483487.1\|SQJ09290.1\|2414550_2415168_+\|LexA-repressor	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	5.37543e-16
LS483487.1\|SQJ09478.1\|2432784_2433387_+\|Membrane-protein-of-uncharacterised-function-(DUF340)	gnl\|CDD\|377175	pfam03956, Lys_export, Lysine exporter LysO. Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. This family includes lysine exporter LysO (YbjE) from E. coli.	8.67813e-61
LS483487.1\|SQJ09360.1\|2416710_2417517_-\|DNA-replication-protein-dnaC	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	4.95083e-51
LS483487.1\|SQJ09387.1\|2424719_2425532_-\|Multidrug-efflux-transporter-1-regulator	gnl\|CDD\|133382	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	5.15557e-32
LS483487.1\|SQJ09408.1\|2429714_2431241_-\|Dipeptide-binding-protein	gnl\|CDD\|173864	cd08499, PBP2_Ylib_like, The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an uncharacterized ATP-binding cassette (ABC)-type peptide transport system YliB. Although the ligand specificity of Ylib protein is not known, it shares significant sequence similarity to the ABC-type dipeptide and oligopeptide binding proteins. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.81065e-173
LS483487.1\|SQJ09401.1\|2428614_2429685_-\|Putative-aminopeptidase-ysdC	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	5.26209e-106
LS483487.1\|SQJ09370.1\|2419448_2419949_-\|Uncharacterised-protein	gnl\|CDD\|372841	pfam13958, ToxN_toxin, Toxin ToxN, type III toxin-antitoxin system. ToxN acts as a toxin, it is part of a type III toxin-antitoxin system. It acts as a ribosome independent endoribonuclease. It interacts with, and is inhibited by, the RNA antitoxin, ToxI. Three ToxN monomers bind to three ToxI monomers to create a trimeric ToxN-ToxI complex.	2.30911e-47

>LS483487.1|SQJ09370.1|2419448_2419949_-|Uncharacterised-protein
MERLRFYEVDLDYMEYIQKVEKKIMDSINSKSNRKFIGIVLKIDNLDYIIPLTSPKEKHKKMKNNIDFLKIDNGLLGAINFNNMFPVPKELHFEKDINLEMDIKYKNLLINQISWCNVSSNKEKIYRTAERLYKEITSKREKSHFWSRCCDFILLEKIAKEYKKTN
>LS483487.1|SQJ09362.1|2417503_2418361_-|Uncharacterised-protein
MENKRNTKNQPFCWQEKKILRLLRCQYDGKEHDKLRNLYLTLTEIYSDFNGRDIKYYTQTIAKYSSLSKDWIPKGLKIFERLKVIRLVEERSKGKFKGKRLIFTPENIIPDKTITEFLEPSEDSSYLEDIKRVKDINNTHTGEEEKVSDNLKQEKEKLSDAPMEIQDILKKYKELNLPEYNYRPDNYVLLGVWRELGAVKLFEALTLMSKSEFVKNNMSINSIFKIENLKKALNGNFKDKEKKSKEKKEPKKKFVRPVYEDSTGNFIKELLNKIAKEDGIEDEEV
>LS483487.1|SQJ09360.1|2416710_2417517_-|DNA-replication-protein-dnaC
MKKCEYCGKEYVKNESDYLKNLSETFRKNLEYLPTCDCLEKKKERELEELERKRTRENIEKKMQKCKDISVIDKKFQNSRFENADIKCEQMQLAQQYVKSFMKKEKQEGLLFYGGVGTGKTFTTACIANYLMERGKTVLVMNLGLYLNKLTIEWGAAERDILEQVEKCDLLVIDDFGGEKGLDKNQTGWRGEKIYNLIDARYRSEKPLIISTNLNFSKDEEKCEISEKFSSHGQNRIRDRIIDMCFPVQVTGKSKRGMTKQKFFEFMY
>LS483487.1|SQJ09311.1|2416448_2416688_-|DNA-binding-domain,-excisionase-family
MEREEYIFKKLGNLSPMNKTLADEIVKELGEWATINEVAKYFKKHRNTIYNKVEEGDILHRKMGTSILIYTRSLIFLLE
>LS483487.1|SQJ09292.1|2415773_2416040_-|Uncharacterised-protein
MIEKIMKAVKSGNKKRGRNITIGITIGLILTGEMGYSEPLEKKAIYDKEIKWLWSLKERKNSVNGSDLDGADAPSSAVTDGIPLWGYM
>LS483487.1|SQJ09290.1|2414550_2415168_+|LexA-repressor
MYNLGQKIMLLRKKENMTQDELAEKLNISKQSILNYETEKRLIPIDVLSNIAKLFNFPIENFFSNTFDDNEILKNSSKIKKIPIISKVSAGTGVFGIEDVLDWLEMPTSLCKNCDFATFIDGDSMEPKVYDNDLILVQKTTFLDNGSIGIFKIGEDVFCKKFYQNPITKAIVLKSINKSYNSISITSEDEFYILGKVVCKIDYNF
>LS483487.1|SQJ09289.1|2413578_2414184_-|Uncharacterised-protein
MELLLATEFKKEKVDFFLDIDEVVMDIEQLRKVTGYSSGRKIKELFETHPELLEKEYSYKKKVPNLEGGVTKMREKRFFTESGIYEVSFLASTPRAREFRRFAGTILKSVRKGEMIPKLPADRWSLMEKKFDGIISTFEDRQDLLENLEGNTEKVVNLLEELKGKLTDFDNLKEDVKALKKAVNLMSRQMDDFLKAFGEEG
>LS483487.1|SQJ09288.1|2412796_2413582_-|site-specific-tyrosine-recombinase-XerC
MIIDKFFMEILTLKGELIYRGYSESTCRIYTSTVKDFLESTDKEIIKIRKGDVIRYLDKQGEKVSKNTILIKLNALELFFEEVLGLDITKDIYKYKREYKYKLMTMKEIETVIALSKDRERLIYTLMKETGIISEEIGMIKVEDLKCADNQWFIVVNGIKYNISIDLARTMYNYMEKHRIQEEIFLSRKKTGLHGTVIRKKFREKTEEVLGIKYGLNEMRHGIALEMWKRGEVDKVTKYLRNKSKGSIKQYFKNFGYDLQY
>LS483487.1|SQJ09287.1|2412575_2412695_-|Uncharacterised-protein
MSKVEFLKGLLIALESSEGKNAYRRMIEKIEKEILRCKV
>LS483487.1|SQJ09286.1|2412177_2412588_-|Uncharacterised-protein
MQGIDKKVLEYKENLLRATELREKIIDAEISFNILKKELGLTVHELRKLVAGELQDKEAAVEKLIKNTPKAIIQRDKEFKHFQKILLKKGIKITELEDTLKVNRNKIYRTIRGENINRDRELEQKLENLLDEKLFC
>LS483487.1|SQJ09384.1|2420642_2423996_-|Uncharacterised-protein
MENKNKTKPNRGSIVRIIISNYDTKGIKEIKVRYRKQAQLDTFILQTTLDKGNNSILISEFRVKAREKNRYSFTYDGKEKFSAPSNSVVITKIDNAAPEKFKEIRKYKITLEIDEKCKTGNMITAAIEDLLEDDIAREGIRNPRRKASKTERKLIAESICHNYAQIAQCPVEEIDAVKIYKVKRFLSYRSNMLLFFALINDFLCKNLKNKKGEKINEIWKMENKGNNKKIDFDENYNILVAQIKEYFTKEIENYNNRIDNIIDKKELLKYSEKKEESEKNKKLEELNKLKSQKLKILTDEEIKADVIKIIKIFSDLRHSLMHYEYKYFENLFENKKNEELAELLNLNLFKNLTLLRQMKIENKTNYLEGREEFNIIGKNIKAKEVLGHYNLLAEQKNGFNNFINSFFVQDGTENLEFKKLIDEHFVNAKKRLERNIKKSKKLEKELEKMEQHYQRLNCAYVWDIHTSTTYKKLYNKRKSLIEEYNKQINEIKDKEVITAINVELLRIKKEMEEITKSNSLFRLKYKMQIAYAFLEIEFGGNIAKFKDEFDCSKMEEVQKYLKKGVKYLKYYKDKEAQKNYEFPFEEIFENKDTHNEEWLENTSENNLFKFYILTYLLLPMEFKGDFLGVVKKHYYDIKNVDFTDESEKELSQVQLDKMIGDSFFHKIRLFEKNTKRYEIIKYSILTSDEIKRYFRLLELDVPYFEYEKGTDEIGIFNKNIILTIFKYYQIIFRLYNDLEIHGLFNISSDLDKILRDLKSYGNKNINFREFLYVIKQNNNSSTEEEYRKIWENLEAKYLRLHLLTPEKEEIKTKTKEELEKLNEISNLRNGICHLNYKEIIEEILKTEISEKNKEATLNEKIRKVINFIKENELDKVELGFNFINDFFMKKEQFMFGQIKQVKEGNSDSITTERERKEKNNKKLKETYELNCDNLSEFYETSNNLRERANSSSLLEDSAFLKKIGLYKVKNNKVNSKVKDEEKRIENIKRKLLKDSSDIMGMYKAEVVKKLKEKLILIFKHDEEKRIYVTVYDTSKAVPENISKEILVKRNNSKEEYFFEDNNKKYVTEYYTLEITETNELKVIPAKKLEGKEFKTEKNKENKLMLNNHYCFNVKIIY
>LS483487.1|SQJ09387.1|2424719_2425532_-|Multidrug-efflux-transporter-1-regulator
MYKIGLFSQITKTTIKALRYYDEVGLLKPSIINKENNYRYYTTEQLYTLHKILCLKQMGFSISEISTILNNNNIKQIINRKKIDLEKEIACLVDQLTRLNNFSNENIKGDGFMNYQAAIKNTSECIVYYKKLSIANYNDYFKVIPQIGKEVIEANPDLKCMIPEYCFIQYLDDEYKEQNFSIEYCEAVTKFGKETESIKFKKLSSILVVSTLHKGDYNNLRDAYNYLFSWINKNNYECIDKAREVYIDGIWNKKNKEEWLTELQIPIKKL
>LS483487.1|SQJ09391.1|2425601_2425763_-|Uncharacterised-protein
MNVAISYDYVPCSTLPVIEATRLEGSFFEYIKEYGLNLEVWDEVSTVTVENIY
>LS483487.1|SQJ09395.1|2426187_2427897_+|Uncharacterised-protein
MENRGKVVAEKMIEIFELLEKEIRETIKNKETLPEDKFMPGWAKGIHFSWYHHMEKPEYGTKESNKTTCFFEFNSIHVSHHRMEEEVDIDLKFLTTEIFKNDIVPTVQSWLQNKVDNEPYGGLYNASFGITVTFSVSRDPLPTDAPHMQGQIWEQTRITAKDEKRLNKRKELIYNFIKNEEYKSADISEIDNSLTPICSVAVEDFLEEFGRVHLIEFFTALIAQAKKARFKSTMSHLIYGFANGAAILTRANENHTPNNEELALACWLCMMMLIHGTDKYERQYGRDYLKTAGELGYKEAKNILKFGTGQIPADTVQFKNKYVTCLGNDIDKVIDLKIKEECEEAYKSMVEFIIKLIKAGFPNEYSIKFNSKVKEFLPIPDLKKTKANTFWNNCAKYPALYPLMKEYAHTIMDSYDYYSDADCEQAVPVGGYAVFALGLADISNGDIVQEFMEQNDSEHSISPSWFVGEYIDKFGITSENIPVVIACLTNSNNHGYKGSNFAGLNNPDILKKFVEELENSEISSYSVYEIIESIWDDEDGLEEAISAAEKVNQKYLQKILELSEEDDED
>LS483487.1|SQJ09399.1|2428027_2428495_-|Uncharacterised-protein
MNIMEKYAEKTINELGKLFFEIGNEQLVPELSKHINIALEKFKEMQNEDDELNKIIIIADVDEKLFAFATGDGSELSSKEDESVFYIAKSENFNECMELIKHICFGNHPEGYLSLDSEVYHWIGDAMPDIDEDMSVTIYGGYYYGETEVDPFWES
>LS483487.1|SQJ09401.1|2428614_2429685_-|Putative-aminopeptidase-ysdC
MKELINMIEELTNTFGAPGFEDEVMEKIKKEVNFLSAERDSINNLYIGLGEKDSAVPTVALDCHTDEVGFIVENINRNGSISFLTLGGWHVGNVPASAVVIKNNKGEYIKGVVTSKPPHFMTDEEKNRLPKMSELTIDIGTSSYEETVELYGIEVGNPIVPDVSFVYDEKIGIMRAKAFDNRLGCAASIEVLKAVKNNGIKNVNVVGAFASQEEVGLRGAQVAAYRVKPDFAIVFEGSPADDSFKEGTASHGALKKGVQLRVVDGAMISNPRVLKFARDIADKKGIKYQMIAREKGSTNGGKYHISETGIPVIVLGIPTRYIHTHYSYASIDDLTAAISLAVEVIKELNKDIIKSF
>LS483487.1|SQJ09408.1|2429714_2431241_-|Dipeptide-binding-protein
MKKRILVLLSCLLSFLLVSCGGSKTAEKAASGPKDTLVFAQISECKTLDPQDTTEQYSQRIINVLYDRLVEVDEMTGETIPGLAKSWERIDDNTLLFHLNENVKFHNGEKFTANDVKFTIERAKSLPKVGHLYKLISNVEVVDDNTVKIITSEPFAPLLAHLSHKTASIISEKYYAEKGNKYFENPVGTGPYKYKDWKIGDRITLEAFPEYFKGEPAIKYIVVRAVPEENSRVIGLETGEIDMTADLGAESRKIVLDNKDKINYLESSGISVNYVGINTDKGVLKDRDVRRAIAMAINRDDIINSIMMGTVDKANSFIAPGTFGYSPDSKVLDYNPEEAKRIIQEKGLTGTKLSLGVSNSPVRMQMCEIIQAQLKEVGIDVSIESLEWGTFLAATGRGDLDMFTLGWGPSTYDGDYGFYPNFHSSQLGGAGNRSQYVNPAMDKLLDDAKKEVDQNKRKELYKEVAEIIYDDVPVIPMYYSNNTVAAVKGIEGVKATSYINFDELSFKK
>LS483487.1|SQJ09436.1|2431442_2432495_+|Aldose-1-epimerase-precursor
MELTVRNWGKTKFNEIVKLYTLKNNFLEVEILNYGGIIRKISFPDKNGKVENIVLNLDSISDYEERSPYFGAVVGRNAGRISNAELKIKDTIYKLNANSGKNNIHGGINNFSHKIWNAEEIKGNDFIGIELTLNSPHLEEGFPGNISITVRYILKNDELSLEYSGITDRETYMNLTNHSYFNLSGDFKRDIRNEYLKLDSDAFIAVDEATLPVKISETHNTPFDFHEFSLLKTSLDSEYPQIKIVNHGLDHPFILNQNRDIPAAQLKDDISGRMLKVFTDQPAVVIYTGNYLHEIGKLSDGSDCKKHMGICFETQDYPNVLSFLPEKGKIYTPSNSYSQKTIFKFLINKN
>LS483487.1|SQJ09472.1|2432509_2432785_+|Uncharacterised-protein
MQDIILYILIISVGYFITKKGWIPKIIDRKVGLLQTLSLFFLLGVMGYKIGSDDKIIANFHILGLDSIIVAVCAVLGSILLTHIFYRGGDK
>LS483487.1|SQJ09478.1|2432784_2433387_+|Membrane-protein-of-uncharacterised-function-(DUF340)
MLGIALSVIIGALLGFFCKSPLVLAHADNLIKFGLCLLLFFVGIDIGKNQSVFEQLKTLNKKVLLLPFVTIIGSLLGGVLASFITTLSLGEGVAVSSGMGWYSFSAIELSKINAQLGGTAFLSNVFRELLAIFTIPFIAARIGSFQSVSSAGATAMDSVLPVINRSNPPDISIIAFYSGLVITIVVPILVPAVVAIFNLG

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Crispr_ID: LS483487_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483487_9

2424026-2424186

TypeVI-C

Consensus_repeat	Method
GTTTAAATTCCACTTACATGGATTTAGTC	CRISPRCasFinder

2 spacers

cas13c

The CRISPR arrays of LS483487_9

>merge|LS483487|9|2424026-2424186|CRISPRCasFinder
ATTTTAAATCCACTTACATGGATTTAGTCGGAAGTAGAAAAAATACAAAAAATGATTGAATATAGTGTTTAAATTCCACTTACATGGATTTAGTCTCCAATTGGAACAGATTCTTGAACCACTGTTGTTTTAGTTTAAATTCCACTTACATGGATTTAGTC

>LS483487|9|8|2424026-2424186|CRISPRCasFinder
ATTTTAAATCCACTTACATGGATTTAGTC	GGAAGTAGAAAAAATACAAAAAATGATTGAATATAGT
GTTTAAATTCCACTTACATGGATTTAGTC	TCCAATTGGAACAGATTCTTGAACCACTGTTGTTTTA
GTTTAAATTCCACTTACATGGATTTAGTC

Protein	Signature genes	Signature genes Name	Protein_function
LS483487.1\|SQJ09289.1\|2413578_2414184_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|226144
LS483487.1\|SQJ09362.1\|2417503_2418361_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09311.1\|2416448_2416688_-\|DNA-binding-domain,-excisionase-family	unknown	unknown	gnl\|CDD\|378935
LS483487.1\|SQJ09360.1\|2416710_2417517_-\|DNA-replication-protein-dnaC	unknown	unknown	gnl\|CDD\|236153
LS483487.1\|SQJ09384.1\|2420642_2423996_-\|Uncharacterised-protein	cas13c	cas13c_CAS-VI-C	unknown
LS483487.1\|SQJ09478.1\|2432784_2433387_+\|Membrane-protein-of-uncharacterised-function-(DUF340)	unknown	unknown	gnl\|CDD\|377175
LS483487.1\|SQJ09472.1\|2432509_2432785_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09290.1\|2414550_2415168_+\|LexA-repressor	unknown	unknown	gnl\|CDD\|224885
LS483487.1\|SQJ09436.1\|2431442_2432495_+\|Aldose-1-epimerase-precursor	unknown	unknown	gnl\|CDD\|185696
LS483487.1\|SQJ09287.1\|2412575_2412695_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09292.1\|2415773_2416040_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09408.1\|2429714_2431241_-\|Dipeptide-binding-protein	unknown	unknown	gnl\|CDD\|173864
LS483487.1\|SQJ09401.1\|2428614_2429685_-\|Putative-aminopeptidase-ysdC	unknown	unknown	gnl\|CDD\|349906
LS483487.1\|SQJ09395.1\|2426187_2427897_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09387.1\|2424719_2425532_-\|Multidrug-efflux-transporter-1-regulator	unknown	unknown	gnl\|CDD\|133382
LS483487.1\|SQJ09288.1\|2412796_2413582_-\|site-specific-tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|338776
LS483487.1\|SQJ09391.1\|2425601_2425763_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09399.1\|2428027_2428495_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483487.1\|SQJ09528.1\|2433810_2437968_+\|Outer-membrane-protein-IcsA-autotransporter-precursor	unknown	unknown	gnl\|CDD\|273608
LS483487.1\|SQJ09370.1\|2419448_2419949_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372841

Protein	Function_ID	Function_description	E-value
LS483487.1\|SQJ09289.1\|2413578_2414184_-\|Uncharacterised-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	5.20591e-06
LS483487.1\|SQJ09311.1\|2416448_2416688_-\|DNA-binding-domain,-excisionase-family	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.63385e-05
LS483487.1\|SQJ09360.1\|2416710_2417517_-\|DNA-replication-protein-dnaC	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	4.95083e-51
LS483487.1\|SQJ09290.1\|2414550_2415168_+\|LexA-repressor	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	5.37543e-16
LS483487.1\|SQJ09478.1\|2432784_2433387_+\|Membrane-protein-of-uncharacterised-function-(DUF340)	gnl\|CDD\|377175	pfam03956, Lys_export, Lysine exporter LysO. Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. This family includes lysine exporter LysO (YbjE) from E. coli.	8.67813e-61
LS483487.1\|SQJ09436.1\|2431442_2432495_+\|Aldose-1-epimerase-precursor	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	7.54268e-125
LS483487.1\|SQJ09408.1\|2429714_2431241_-\|Dipeptide-binding-protein	gnl\|CDD\|173864	cd08499, PBP2_Ylib_like, The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an uncharacterized ATP-binding cassette (ABC)-type peptide transport system YliB. Although the ligand specificity of Ylib protein is not known, it shares significant sequence similarity to the ABC-type dipeptide and oligopeptide binding proteins. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.81065e-173
LS483487.1\|SQJ09401.1\|2428614_2429685_-\|Putative-aminopeptidase-ysdC	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	5.26209e-106
LS483487.1\|SQJ09387.1\|2424719_2425532_-\|Multidrug-efflux-transporter-1-regulator	gnl\|CDD\|133382	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	5.15557e-32
LS483487.1\|SQJ09288.1\|2412796_2413582_-\|site-specific-tyrosine-recombinase-XerC	gnl\|CDD\|338776	pfam13495, Phage_int_SAM_4, Phage integrase, N-terminal SAM-like domain.	9.58403e-08
LS483487.1\|SQJ09528.1\|2433810_2437968_+\|Outer-membrane-protein-IcsA-autotransporter-precursor	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.53664e-35
LS483487.1\|SQJ09370.1\|2419448_2419949_-\|Uncharacterised-protein	gnl\|CDD\|372841	pfam13958, ToxN_toxin, Toxin ToxN, type III toxin-antitoxin system. ToxN acts as a toxin, it is part of a type III toxin-antitoxin system. It acts as a ribosome independent endoribonuclease. It interacts with, and is inhibited by, the RNA antitoxin, ToxI. Three ToxN monomers bind to three ToxI monomers to create a trimeric ToxN-ToxI complex.	2.30911e-47

>LS483487.1|SQJ09384.1|2420642_2423996_-|Uncharacterised-protein
MENKNKTKPNRGSIVRIIISNYDTKGIKEIKVRYRKQAQLDTFILQTTLDKGNNSILISEFRVKAREKNRYSFTYDGKEKFSAPSNSVVITKIDNAAPEKFKEIRKYKITLEIDEKCKTGNMITAAIEDLLEDDIAREGIRNPRRKASKTERKLIAESICHNYAQIAQCPVEEIDAVKIYKVKRFLSYRSNMLLFFALINDFLCKNLKNKKGEKINEIWKMENKGNNKKIDFDENYNILVAQIKEYFTKEIENYNNRIDNIIDKKELLKYSEKKEESEKNKKLEELNKLKSQKLKILTDEEIKADVIKIIKIFSDLRHSLMHYEYKYFENLFENKKNEELAELLNLNLFKNLTLLRQMKIENKTNYLEGREEFNIIGKNIKAKEVLGHYNLLAEQKNGFNNFINSFFVQDGTENLEFKKLIDEHFVNAKKRLERNIKKSKKLEKELEKMEQHYQRLNCAYVWDIHTSTTYKKLYNKRKSLIEEYNKQINEIKDKEVITAINVELLRIKKEMEEITKSNSLFRLKYKMQIAYAFLEIEFGGNIAKFKDEFDCSKMEEVQKYLKKGVKYLKYYKDKEAQKNYEFPFEEIFENKDTHNEEWLENTSENNLFKFYILTYLLLPMEFKGDFLGVVKKHYYDIKNVDFTDESEKELSQVQLDKMIGDSFFHKIRLFEKNTKRYEIIKYSILTSDEIKRYFRLLELDVPYFEYEKGTDEIGIFNKNIILTIFKYYQIIFRLYNDLEIHGLFNISSDLDKILRDLKSYGNKNINFREFLYVIKQNNNSSTEEEYRKIWENLEAKYLRLHLLTPEKEEIKTKTKEELEKLNEISNLRNGICHLNYKEIIEEILKTEISEKNKEATLNEKIRKVINFIKENELDKVELGFNFINDFFMKKEQFMFGQIKQVKEGNSDSITTERERKEKNNKKLKETYELNCDNLSEFYETSNNLRERANSSSLLEDSAFLKKIGLYKVKNNKVNSKVKDEEKRIENIKRKLLKDSSDIMGMYKAEVVKKLKEKLILIFKHDEEKRIYVTVYDTSKAVPENISKEILVKRNNSKEEYFFEDNNKKYVTEYYTLEITETNELKVIPAKKLEGKEFKTEKNKENKLMLNNHYCFNVKIIY
>LS483487.1|SQJ09370.1|2419448_2419949_-|Uncharacterised-protein
MERLRFYEVDLDYMEYIQKVEKKIMDSINSKSNRKFIGIVLKIDNLDYIIPLTSPKEKHKKMKNNIDFLKIDNGLLGAINFNNMFPVPKELHFEKDINLEMDIKYKNLLINQISWCNVSSNKEKIYRTAERLYKEITSKREKSHFWSRCCDFILLEKIAKEYKKTN
>LS483487.1|SQJ09362.1|2417503_2418361_-|Uncharacterised-protein
MENKRNTKNQPFCWQEKKILRLLRCQYDGKEHDKLRNLYLTLTEIYSDFNGRDIKYYTQTIAKYSSLSKDWIPKGLKIFERLKVIRLVEERSKGKFKGKRLIFTPENIIPDKTITEFLEPSEDSSYLEDIKRVKDINNTHTGEEEKVSDNLKQEKEKLSDAPMEIQDILKKYKELNLPEYNYRPDNYVLLGVWRELGAVKLFEALTLMSKSEFVKNNMSINSIFKIENLKKALNGNFKDKEKKSKEKKEPKKKFVRPVYEDSTGNFIKELLNKIAKEDGIEDEEV
>LS483487.1|SQJ09360.1|2416710_2417517_-|DNA-replication-protein-dnaC
MKKCEYCGKEYVKNESDYLKNLSETFRKNLEYLPTCDCLEKKKERELEELERKRTRENIEKKMQKCKDISVIDKKFQNSRFENADIKCEQMQLAQQYVKSFMKKEKQEGLLFYGGVGTGKTFTTACIANYLMERGKTVLVMNLGLYLNKLTIEWGAAERDILEQVEKCDLLVIDDFGGEKGLDKNQTGWRGEKIYNLIDARYRSEKPLIISTNLNFSKDEEKCEISEKFSSHGQNRIRDRIIDMCFPVQVTGKSKRGMTKQKFFEFMY
>LS483487.1|SQJ09311.1|2416448_2416688_-|DNA-binding-domain,-excisionase-family
MEREEYIFKKLGNLSPMNKTLADEIVKELGEWATINEVAKYFKKHRNTIYNKVEEGDILHRKMGTSILIYTRSLIFLLE
>LS483487.1|SQJ09292.1|2415773_2416040_-|Uncharacterised-protein
MIEKIMKAVKSGNKKRGRNITIGITIGLILTGEMGYSEPLEKKAIYDKEIKWLWSLKERKNSVNGSDLDGADAPSSAVTDGIPLWGYM
>LS483487.1|SQJ09290.1|2414550_2415168_+|LexA-repressor
MYNLGQKIMLLRKKENMTQDELAEKLNISKQSILNYETEKRLIPIDVLSNIAKLFNFPIENFFSNTFDDNEILKNSSKIKKIPIISKVSAGTGVFGIEDVLDWLEMPTSLCKNCDFATFIDGDSMEPKVYDNDLILVQKTTFLDNGSIGIFKIGEDVFCKKFYQNPITKAIVLKSINKSYNSISITSEDEFYILGKVVCKIDYNF
>LS483487.1|SQJ09289.1|2413578_2414184_-|Uncharacterised-protein
MELLLATEFKKEKVDFFLDIDEVVMDIEQLRKVTGYSSGRKIKELFETHPELLEKEYSYKKKVPNLEGGVTKMREKRFFTESGIYEVSFLASTPRAREFRRFAGTILKSVRKGEMIPKLPADRWSLMEKKFDGIISTFEDRQDLLENLEGNTEKVVNLLEELKGKLTDFDNLKEDVKALKKAVNLMSRQMDDFLKAFGEEG
>LS483487.1|SQJ09288.1|2412796_2413582_-|site-specific-tyrosine-recombinase-XerC
MIIDKFFMEILTLKGELIYRGYSESTCRIYTSTVKDFLESTDKEIIKIRKGDVIRYLDKQGEKVSKNTILIKLNALELFFEEVLGLDITKDIYKYKREYKYKLMTMKEIETVIALSKDRERLIYTLMKETGIISEEIGMIKVEDLKCADNQWFIVVNGIKYNISIDLARTMYNYMEKHRIQEEIFLSRKKTGLHGTVIRKKFREKTEEVLGIKYGLNEMRHGIALEMWKRGEVDKVTKYLRNKSKGSIKQYFKNFGYDLQY
>LS483487.1|SQJ09287.1|2412575_2412695_-|Uncharacterised-protein
MSKVEFLKGLLIALESSEGKNAYRRMIEKIEKEILRCKV
>LS483487.1|SQJ09387.1|2424719_2425532_-|Multidrug-efflux-transporter-1-regulator
MYKIGLFSQITKTTIKALRYYDEVGLLKPSIINKENNYRYYTTEQLYTLHKILCLKQMGFSISEISTILNNNNIKQIINRKKIDLEKEIACLVDQLTRLNNFSNENIKGDGFMNYQAAIKNTSECIVYYKKLSIANYNDYFKVIPQIGKEVIEANPDLKCMIPEYCFIQYLDDEYKEQNFSIEYCEAVTKFGKETESIKFKKLSSILVVSTLHKGDYNNLRDAYNYLFSWINKNNYECIDKAREVYIDGIWNKKNKEEWLTELQIPIKKL
>LS483487.1|SQJ09391.1|2425601_2425763_-|Uncharacterised-protein
MNVAISYDYVPCSTLPVIEATRLEGSFFEYIKEYGLNLEVWDEVSTVTVENIY
>LS483487.1|SQJ09395.1|2426187_2427897_+|Uncharacterised-protein
MENRGKVVAEKMIEIFELLEKEIRETIKNKETLPEDKFMPGWAKGIHFSWYHHMEKPEYGTKESNKTTCFFEFNSIHVSHHRMEEEVDIDLKFLTTEIFKNDIVPTVQSWLQNKVDNEPYGGLYNASFGITVTFSVSRDPLPTDAPHMQGQIWEQTRITAKDEKRLNKRKELIYNFIKNEEYKSADISEIDNSLTPICSVAVEDFLEEFGRVHLIEFFTALIAQAKKARFKSTMSHLIYGFANGAAILTRANENHTPNNEELALACWLCMMMLIHGTDKYERQYGRDYLKTAGELGYKEAKNILKFGTGQIPADTVQFKNKYVTCLGNDIDKVIDLKIKEECEEAYKSMVEFIIKLIKAGFPNEYSIKFNSKVKEFLPIPDLKKTKANTFWNNCAKYPALYPLMKEYAHTIMDSYDYYSDADCEQAVPVGGYAVFALGLADISNGDIVQEFMEQNDSEHSISPSWFVGEYIDKFGITSENIPVVIACLTNSNNHGYKGSNFAGLNNPDILKKFVEELENSEISSYSVYEIIESIWDDEDGLEEAISAAEKVNQKYLQKILELSEEDDED
>LS483487.1|SQJ09399.1|2428027_2428495_-|Uncharacterised-protein
MNIMEKYAEKTINELGKLFFEIGNEQLVPELSKHINIALEKFKEMQNEDDELNKIIIIADVDEKLFAFATGDGSELSSKEDESVFYIAKSENFNECMELIKHICFGNHPEGYLSLDSEVYHWIGDAMPDIDEDMSVTIYGGYYYGETEVDPFWES
>LS483487.1|SQJ09401.1|2428614_2429685_-|Putative-aminopeptidase-ysdC
MKELINMIEELTNTFGAPGFEDEVMEKIKKEVNFLSAERDSINNLYIGLGEKDSAVPTVALDCHTDEVGFIVENINRNGSISFLTLGGWHVGNVPASAVVIKNNKGEYIKGVVTSKPPHFMTDEEKNRLPKMSELTIDIGTSSYEETVELYGIEVGNPIVPDVSFVYDEKIGIMRAKAFDNRLGCAASIEVLKAVKNNGIKNVNVVGAFASQEEVGLRGAQVAAYRVKPDFAIVFEGSPADDSFKEGTASHGALKKGVQLRVVDGAMISNPRVLKFARDIADKKGIKYQMIAREKGSTNGGKYHISETGIPVIVLGIPTRYIHTHYSYASIDDLTAAISLAVEVIKELNKDIIKSF
>LS483487.1|SQJ09408.1|2429714_2431241_-|Dipeptide-binding-protein
MKKRILVLLSCLLSFLLVSCGGSKTAEKAASGPKDTLVFAQISECKTLDPQDTTEQYSQRIINVLYDRLVEVDEMTGETIPGLAKSWERIDDNTLLFHLNENVKFHNGEKFTANDVKFTIERAKSLPKVGHLYKLISNVEVVDDNTVKIITSEPFAPLLAHLSHKTASIISEKYYAEKGNKYFENPVGTGPYKYKDWKIGDRITLEAFPEYFKGEPAIKYIVVRAVPEENSRVIGLETGEIDMTADLGAESRKIVLDNKDKINYLESSGISVNYVGINTDKGVLKDRDVRRAIAMAINRDDIINSIMMGTVDKANSFIAPGTFGYSPDSKVLDYNPEEAKRIIQEKGLTGTKLSLGVSNSPVRMQMCEIIQAQLKEVGIDVSIESLEWGTFLAATGRGDLDMFTLGWGPSTYDGDYGFYPNFHSSQLGGAGNRSQYVNPAMDKLLDDAKKEVDQNKRKELYKEVAEIIYDDVPVIPMYYSNNTVAAVKGIEGVKATSYINFDELSFKK
>LS483487.1|SQJ09436.1|2431442_2432495_+|Aldose-1-epimerase-precursor
MELTVRNWGKTKFNEIVKLYTLKNNFLEVEILNYGGIIRKISFPDKNGKVENIVLNLDSISDYEERSPYFGAVVGRNAGRISNAELKIKDTIYKLNANSGKNNIHGGINNFSHKIWNAEEIKGNDFIGIELTLNSPHLEEGFPGNISITVRYILKNDELSLEYSGITDRETYMNLTNHSYFNLSGDFKRDIRNEYLKLDSDAFIAVDEATLPVKISETHNTPFDFHEFSLLKTSLDSEYPQIKIVNHGLDHPFILNQNRDIPAAQLKDDISGRMLKVFTDQPAVVIYTGNYLHEIGKLSDGSDCKKHMGICFETQDYPNVLSFLPEKGKIYTPSNSYSQKTIFKFLINKN
>LS483487.1|SQJ09472.1|2432509_2432785_+|Uncharacterised-protein
MQDIILYILIISVGYFITKKGWIPKIIDRKVGLLQTLSLFFLLGVMGYKIGSDDKIIANFHILGLDSIIVAVCAVLGSILLTHIFYRGGDK
>LS483487.1|SQJ09478.1|2432784_2433387_+|Membrane-protein-of-uncharacterised-function-(DUF340)
MLGIALSVIIGALLGFFCKSPLVLAHADNLIKFGLCLLLFFVGIDIGKNQSVFEQLKTLNKKVLLLPFVTIIGSLLGGVLASFITTLSLGEGVAVSSGMGWYSFSAIELSKINAQLGGTAFLSNVFRELLAIFTIPFIAARIGSFQSVSSAGATAMDSVLPVINRSNPPDISIIAFYSGLVITIVVPILVPAVVAIFNLG
>LS483487.1|SQJ09528.1|2433810_2437968_+|Outer-membrane-protein-IcsA-autotransporter-precursor
MSENSARKNKMKKKILSPLLTVGIMSICIPLEDAWASSPVDYVGTVNLPASIGTGKETANDGWTVTIGNGSTPTKVTQDGKTVISVNDNAKITVKTDAAVEGNSNSNSEGHFNSGPNVIEFNSKSTLTIEAGGTVQQLGSTTNGEAINAHGFGNTIINNGTIHSNNGAALWFQDTSISVSVADRNKVVNHGTISTSKGDGYNVFGSSRGNAGPGLVFDNYGTIKGSLKFGSGDDSLLFGPGSKITGNVDGGGGTNDLTLDANSGESATLAGSVLNFSSITKDGEGAWAILGSVPAVPGDPHPSSPINGSLKEVDSLVIKKGLLSLVGANPDFNGTVNIDAPGQLSAQAQGINGATNMTNNGKLIFEQPIDDSYTGSAITGTGQVVKSGTGSLTMSSGTANTYSGGTFINEGALVVDKDSDLGAVSGSITLGTDNTAGGTNGTLRFDSSFNLETTRAITLMEGGGTIDTQGYITNIDQTIAGTGTLTKTGSGTLTLNATNSYIGGTVLQEGVLGINSDSALGNSNSRLVMYDTTTLQLNGNVDSNRLVTLAGGPSSMMTINTQANNGAFNGNIDGLGSLVKTGSGTLSLYGNNLYQGGTKVKEGTLAINSDASLGGVNGLLELERNTTLKLDGNVYMNSRPVIIGGGDNATLPQSVTIDTQGYTGVISQNIDQNAGEKTELIKTGTGTLGLYGNNTYSGGTWVKNGTVAITSPLSLGKSDVQLGDHEDTSLDGSGSTQGTLRADADIDFRGSGKSIILNKGGGTINTNGNAVILDENSLKDGIAGTASDLGRDLHKTGAGVLTLLDNQYYSGRTFIDQGILRLDAVEPNTPLSNSKGLLNTSEVTIAAGSRLEGQGIVGNSMNVQLNNSNAPVAANLTTIINNGTIAPGLERFNNTFDSTDSQFVPLTLAGNYRAGKGAAVEIHTELLDDISNHGSLTIDGVIDSASDKSGTGVVVIHQGGNGATTNHGIEIIRLRGNNSGATQADLIKQLDENFHLVSDFKTSKGQNAVVAGAYSYIMESDKDWYDNPNNQVGLFLRNATNNDGSLVPHPATPLYETYSLILGSLNKLPTLEQRIGHRPWLNDKNGYETGYDRGKTEIYPNNVWMRVEGMKGYYEPHLDSNKGSTSSYRLRFSRVNVGVDMPIYENADGSRLIAGINGNMSRAWSDIDSIHGSGDITTTGYGLGATLTWYNHNGFYTDAQAWHNWFKSDIDSNTITTDLDQVKGNHAKGYALSLEVGRIFDLNQHWSLTPQAQIAYSRVNFDSFTDIQNSVIINEKDYVGLEGRLGLALNYEKSHLDSSGKMRRNKLYILGNIHQEFKGDSTVSISGVDYESKMNNTWVSVGVGGSHNWDNDRFSIYGELSLASSTKKFGEEYELAGEIGLRIAF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483487_4	4.7\|1516470\|37\|LS483487\|CRISPRCasFinder,CRT	1516470-1516506	37	LS483487.1	2637953-2637989	0	1.0
LS483487_1	1.1\|526164\|18\|LS483487\|CRISPRCasFinder	526164-526181	18	LS483487.1	2331526-2331543	2	0.889
LS483487_5	5.15\|1527083\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527083-1527118	36	LS483487.1	1126197-1126232	2	0.944

1. spacer 4.7|1516470|37|LS483487|CRISPRCasFinder,CRT matches to position: 2637953-2637989, mismatch: 0, identity: 1.0

ttaggaatagatataatgctgaatcctgaagcagaag	CRISPR spacer
ttaggaatagatataatgctgaatcctgaagcagaag	Protospacer
*************************************

2. spacer 1.1|526164|18|LS483487|CRISPRCasFinder matches to position: 2331526-2331543, mismatch: 2, identity: 0.889

taagaaaggttttctctt	CRISPR spacer
taagaatgtttttctctt	Protospacer
****** * *********

3. spacer 5.15|1527083|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to position: 1126197-1126232, mismatch: 2, identity: 0.944

accttttagattctctaatttgtcagaattttgttt	CRISPR spacer
accttttagattctctaatttgtcagaatttgattt	Protospacer
******************************* .***

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483487_4	4.15\|1516990\|36\|LS483487\|CRISPRCasFinder,CRT	1516990-1517025	36	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	34545-34580	1	0.972
LS483487_4	4.17\|1517120\|37\|LS483487\|CRISPRCasFinder,CRT	1517120-1517156	37	NZ_AP017970	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-2, complete sequence	2005-2041	1	0.973
LS483487_6	6.22\|1656931\|38\|LS483487\|CRT	1656931-1656968	38	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	22462-22499	1	0.974
LS483487_6	6.4\|1656222\|36\|LS483487\|PILER-CR,CRISPRCasFinder	1656222-1656257	36	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	1221-1256	2	0.944
LS483487_6	6.30\|1656944\|38\|LS483487\|PILER-CR	1656944-1656981	38	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	22463-22500	2	0.947
LS483487_4	4.32\|1516991\|39\|LS483487\|PILER-CR	1516991-1517029	39	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	34545-34583	3	0.923
LS483487_6	6.11\|1656222\|38\|LS483487\|CRT	1656222-1656259	38	NZ_AP017969	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence	1219-1256	3	0.921
LS483487_4	4.34\|1517121\|40\|LS483487\|PILER-CR	1517121-1517160	40	NZ_AP017970	Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-2, complete sequence	2005-2044	4	0.9
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223766	Chlamydia pecorum strain 66P130 plasmid pCpec66P130, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223767	Chlamydia pecorum strain 1886 plasmid pCpec1886, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223768	Chlamydia pecorum strain CurE11Rec plasmid pCpecCurE11Rec, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223770	Chlamydia pecorum strain DbDeUG plasmid pCpecDBDeUG, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223774	Chlamydia pecorum strain LW623 plasmid pCpecLW623, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223775	Chlamydia pecorum strain Marsbar plasmid pCpecMarsbar, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223772	Chlamydia pecorum strain IpTaLe plasmid pCpecIpTaLE, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223771	Chlamydia pecorum strain IPA plasmid pCpecIPA, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223777	Chlamydia pecorum strain SaK09Ure plasmid pCpecSAK09Ure, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT352920	Chlamydia pecorum strain HazBoEye plasmid pCpec, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223781	Chlamydia pecorum strain WaB31Ileal plasmid pCpecWAB31Ileal, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NZ_KT223780	Chlamydia pecorum strain W73 plasmid pCpecW73, complete sequence	2518-2545	5	0.821
LS483487_4	4.1\|1516091\|28\|LS483487\|CRISPRCasFinder,CRT	1516091-1516118	28	NC_007900	Chlamydia felis Fe/C-56 plasmid pCfe1, complete sequence	2667-2694	5	0.821
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NZ_CP031220	Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence	163784-163819	5	0.861
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250021	Prevotella phage Lak-B2, complete genome	506152-506183	6	0.812
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250024	Prevotella phage Lak-B5, complete genome	500518-500549	6	0.812
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250028	Prevotella phage Lak-B9, complete genome	504949-504980	6	0.812
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250023	Prevotella phage Lak-B4, complete genome	505383-505414	6	0.812
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250025	Prevotella phage Lak-B6, complete genome	503612-503643	6	0.812
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250022	Prevotella phage Lak-B3, complete genome	503702-503733	6	0.812
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250027	Prevotella phage Lak-B8, complete genome	505915-505946	6	0.812
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250026	Prevotella phage Lak-B7, complete genome	504951-504982	6	0.812
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250020	Prevotella phage Lak-B1, complete genome	504932-504963	6	0.812
LS483487_7	7.6\|2206866\|32\|LS483487\|CRT	2206866-2206897	32	NZ_CP044550	Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence	104472-104503	6	0.812
LS483487_8	8.2\|2420315\|32\|LS483487\|PILER-CR	2420315-2420346	32	KY296500	Xenohaliotis phage pCXc-HC2016, complete genome	21673-21704	6	0.812
LS483487_8	8.2\|2420315\|32\|LS483487\|PILER-CR	2420315-2420346	32	KY296501	Xenohaliotis phage pCXc-HR2015, complete genome	21671-21702	6	0.812
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223766	Chlamydia pecorum strain 66P130 plasmid pCpec66P130, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223767	Chlamydia pecorum strain 1886 plasmid pCpec1886, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223768	Chlamydia pecorum strain CurE11Rec plasmid pCpecCurE11Rec, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223770	Chlamydia pecorum strain DbDeUG plasmid pCpecDBDeUG, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223774	Chlamydia pecorum strain LW623 plasmid pCpecLW623, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223775	Chlamydia pecorum strain Marsbar plasmid pCpecMarsbar, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223772	Chlamydia pecorum strain IpTaLe plasmid pCpecIpTaLE, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223771	Chlamydia pecorum strain IPA plasmid pCpecIPA, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223777	Chlamydia pecorum strain SaK09Ure plasmid pCpecSAK09Ure, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT352920	Chlamydia pecorum strain HazBoEye plasmid pCpec, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223781	Chlamydia pecorum strain WaB31Ileal plasmid pCpecWAB31Ileal, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_KT223780	Chlamydia pecorum strain W73 plasmid pCpecW73, complete sequence	2518-2548	7	0.774
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NC_007900	Chlamydia felis Fe/C-56 plasmid pCfe1, complete sequence	2667-2697	7	0.774
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	189534-189569	7	0.806
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	169988-170023	7	0.806
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	171954-171989	7	0.806
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	182670-182705	7	0.806
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	209212-209247	7	0.806
LS483487_5	5.19\|1527343\|35\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527343-1527377	35	NC_048074	Acinetobacter phage vB_AbaM_B09_Aci01-1, complete genome	67075-67109	7	0.8
LS483487_5	5.19\|1527343\|35\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527343-1527377	35	MT708547	Klebsiella phage Muenster, complete genome	122073-122107	7	0.8
LS483487_5	5.19\|1527343\|35\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527343-1527377	35	MF919491	Propionibacterium phage Aquarius, complete genome	29069-29103	7	0.8
LS483487_5	5.19\|1527343\|35\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527343-1527377	35	NC_022337	Propionibacterium phage PHL071N05, complete genome	28435-28469	7	0.8
LS483487_5	5.19\|1527343\|35\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527343-1527377	35	NC_027630	Propionibacterium phage Ouroboros, complete genome	28461-28495	7	0.8
LS483487_6	6.7\|1656422\|36\|LS483487\|CRISPRCasFinder	1656422-1656457	36	MT774399	CrAssphage cr109_1, complete genome	69617-69652	7	0.806
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250025	Prevotella phage Lak-B6, complete genome	67003-67034	7	0.781
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	MK250022	Prevotella phage Lak-B3, complete genome	67018-67049	7	0.781
LS483487_9	9.1\|2424055\|37\|LS483487\|CRISPRCasFinder	2424055-2424091	37	NC_010479	Synechococcus sp. PCC 7002 plasmid pAQ5, complete sequence	20470-20506	7	0.811
LS483487_4	4.17\|1517120\|37\|LS483487\|CRISPRCasFinder,CRT	1517120-1517156	37	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	149947-149983	8	0.784
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_CP045813	Bacillus subtilis strain P8_B3 plasmid pBs005, complete sequence	44791-44821	8	0.742
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_CP041758	Bacillus sp. KBS0812 plasmid unnamed, complete sequence	77069-77099	8	0.742
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NC_021809	Bacillus subtilis subsp. subtilis str. NCIB 3610 plasmid pBS32, complete sequence	47868-47898	8	0.742
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_CP020103	Bacillus subtilis strain NCIB 3610 plasmid pBS32, complete sequence	39279-39309	8	0.742
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NC_015149	Bacillus subtilis subsp. natto plasmid pLS32 DNA, complete sequence, strain: IAM 11631	3899-3929	8	0.742
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_CP034485	Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 strain NCIB 3610 plasmid unnamed, complete sequence	3435-3465	8	0.742
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_CP045923	Bacillus subtilis strain P8_B1 plasmid pBs003, complete sequence	44890-44920	8	0.742
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_CP028216	Bacillus subtilis strain SRCM102750 plasmid unnamed1, complete sequence	75137-75167	8	0.742
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_CP035398	Bacillus subtilis strain SRCM103773 plasmid unnamed1, complete sequence	58150-58180	8	0.742
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_CP030938	Bacillus sp. DM2 plasmid unnamed, complete sequence	28033-28063	8	0.742
LS483487_4	4.18\|1516092\|31\|LS483487\|PILER-CR	1516092-1516122	31	NZ_AP019715	Bacillus subtilis subsp. subtilis strain NBRC 13719 plasmid pBSU1, complete sequence	31343-31373	8	0.742
LS483487_5	5.1\|1526179\|35\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1526179-1526213	35	MN694474	Marine virus AFVG_250M581, complete genome	27704-27738	8	0.771
LS483487_6	6.3\|1656157\|35\|LS483487\|PILER-CR,CRISPRCasFinder	1656157-1656191	35	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	24114-24148	8	0.771
LS483487_6	6.3\|1656157\|35\|LS483487\|PILER-CR,CRISPRCasFinder	1656157-1656191	35	MT939240	Enterococcus phage 9181, complete genome	30365-30399	8	0.771
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	623716-623747	8	0.75
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	115364-115395	8	0.75
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	641418-641449	8	0.75
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	641433-641464	8	0.75
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	693869-693900	8	0.75
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	116600-116631	8	0.75
LS483487_7	7.6\|2206866\|32\|LS483487\|CRT	2206866-2206897	32	NZ_CP026534	Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence	8831-8862	8	0.75
LS483487_8	8.2\|2420315\|32\|LS483487\|PILER-CR	2420315-2420346	32	MK448931	Streptococcus phage Javan414, complete genome	253-284	8	0.75
LS483487_4	4.14\|1516926\|35\|LS483487\|CRISPRCasFinder,CRT	1516926-1516960	35	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	73130-73164	9	0.743
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	CP012553	Campylobacter sp. RM16192 plasmid p16192, complete sequence	25198-25233	9	0.75
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	118877-118912	9	0.75
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	240727-240762	9	0.75
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	54650-54685	9	0.75
LS483487_5	5.19\|1527343\|35\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527343-1527377	35	NZ_KX258624	Bacillus thuringiensis strain INTA Fr7-4 plasmid pFR260, complete sequence	145368-145402	9	0.743
LS483487_5	5.19\|1527343\|35\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527343-1527377	35	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	155925-155959	9	0.743
LS483487_6	6.2\|1656091\|36\|LS483487\|PILER-CR,CRISPRCasFinder	1656091-1656126	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	486173-486208	9	0.75
LS483487_6	6.10\|1656157\|37\|LS483487\|CRT	1656157-1656193	37	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	24112-24148	9	0.757
LS483487_6	6.10\|1656157\|37\|LS483487\|CRT	1656157-1656193	37	MT939240	Enterococcus phage 9181, complete genome	30365-30401	9	0.757
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NZ_CP042515	Serratia marcescens strain E28 plasmid pE28_003	26262-26293	9	0.719
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	AY082070	Bacteriophage phi3626, complete genome	12961-12992	9	0.719
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NC_003524	Clostridium phage phi3626, complete genome	12961-12992	9	0.719
LS483487_7	7.6\|2206866\|32\|LS483487\|CRT	2206866-2206897	32	AB797215	Klebsiella phage 0507-KN2-1 DNA, complete genome	950-981	9	0.719
LS483487_8	8.2\|2420315\|32\|LS483487\|PILER-CR	2420315-2420346	32	MF448566	Lactococcus phage 63302, complete genome	31803-31834	9	0.719
LS483487_5	5.3\|1526308\|34\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1526308-1526341	34	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	49977-50010	10	0.706
LS483487_5	5.3\|1526308\|34\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1526308-1526341	34	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	60693-60726	10	0.706
LS483487_5	5.16\|1527148\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527148-1527183	36	L33769	Lactococcus phage bIL67, complete genome	15406-15441	10	0.722
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	46123-46158	10	0.722
LS483487_5	5.18\|1527278\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527278-1527313	36	NZ_CP038900	Piscirickettsia salmonis strain Psal-006b plasmid unnamed2, complete sequence	43735-43770	10	0.722
LS483487_6	6.3\|1656157\|35\|LS483487\|PILER-CR,CRISPRCasFinder	1656157-1656191	35	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	912392-912426	10	0.714
LS483487_7	7.1\|2206732\|35\|LS483487\|CRISPRCasFinder	2206732-2206766	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	623713-623747	10	0.714
LS483487_7	7.1\|2206732\|35\|LS483487\|CRISPRCasFinder	2206732-2206766	35	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	115364-115398	10	0.714
LS483487_7	7.1\|2206732\|35\|LS483487\|CRISPRCasFinder	2206732-2206766	35	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	641418-641452	10	0.714
LS483487_7	7.1\|2206732\|35\|LS483487\|CRISPRCasFinder	2206732-2206766	35	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	641433-641467	10	0.714
LS483487_7	7.1\|2206732\|35\|LS483487\|CRISPRCasFinder	2206732-2206766	35	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	693866-693900	10	0.714
LS483487_7	7.1\|2206732\|35\|LS483487\|CRISPRCasFinder	2206732-2206766	35	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	116600-116634	10	0.714
LS483487_7	7.3\|2206864\|34\|LS483487\|CRISPRCasFinder	2206864-2206897	34	AB797215	Klebsiella phage 0507-KN2-1 DNA, complete genome	950-983	10	0.706
LS483487_7	7.3\|2206864\|34\|LS483487\|CRISPRCasFinder	2206864-2206897	34	NZ_CP044550	Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence	104472-104505	10	0.706
LS483487_7	7.3\|2206864\|34\|LS483487\|CRISPRCasFinder	2206864-2206897	34	NZ_CP026534	Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence	8829-8862	10	0.706
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NZ_CP045225	Clostridioides difficile strain TW11 plasmid p_TW11, complete sequence	3100-3131	10	0.688
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NC_017296	Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence	150290-150321	10	0.688
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	1357319-1357350	10	0.688
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NC_021183	Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence	24875-24906	10	0.688
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NC_015686	Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence	150290-150321	10	0.688
LS483487_7	7.4\|2206735\|32\|LS483487\|CRT	2206735-2206766	32	NC_001988	Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence	150290-150321	10	0.688
LS483487_5	5.14\|1527018\|36\|LS483487\|PILER-CR,CRISPRCasFinder,CRT	1527018-1527053	36	NC_019677	Nostoc sp. PCC 7524 plasmid pNOS7524.01, complete sequence	47592-47627	11	0.694
LS483487_6	6.3\|1656157\|35\|LS483487\|PILER-CR,CRISPRCasFinder	1656157-1656191	35	LC425525	Uncultured phage DNA, contig: NODE869	8726-8760	11	0.686
LS483487_6	6.3\|1656157\|35\|LS483487\|PILER-CR,CRISPRCasFinder	1656157-1656191	35	NZ_CP015630	Borrelia turicatae strain BTE5EL plasmid lp159	108443-108477	11	0.686
LS483487_6	6.9\|1656091\|38\|LS483487\|CRT	1656091-1656128	38	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	486173-486210	11	0.711
LS483487_6	6.10\|1656157\|37\|LS483487\|CRT	1656157-1656193	37	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	912390-912426	12	0.676

1. spacer 4.15|1516990|36|LS483487|CRISPRCasFinder,CRT matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 1, identity: 0.972

aagcagaagaggtggaaattaaaatatctgaaaaat	CRISPR spacer
aagcagaagaggtagaaattaaaatatctgaaaaat	Protospacer
*************.**********************

2. spacer 4.17|1517120|37|LS483487|CRISPRCasFinder,CRT matches to NZ_AP017970 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-2, complete sequence) position: , mismatch: 1, identity: 0.973

tagaaaataatcttacttcacattttaaaaatattat	CRISPR spacer
tagaaaataatcttgcttcacattttaaaaatattat	Protospacer
**************.**********************

3. spacer 6.22|1656931|38|LS483487|CRT matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 1, identity: 0.974

accttagaagaatcaaaaattttcttagtctctttaaa	CRISPR spacer
accttagaagaatcaaaaattttcttagtatctttaaa	Protospacer
***************************** ********

4. spacer 6.4|1656222|36|LS483487|PILER-CR,CRISPRCasFinder matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 2, identity: 0.944

ctcaaaggatagactccacgctttttttcaactgtt	CRISPR spacer
ctcaaaggatagactacacgcttcttttcaactgtt	Protospacer
*************** *******.************

5. spacer 6.30|1656944|38|LS483487|PILER-CR matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 2, identity: 0.947

taccttagaagaatcaaaaattttcttagtctctttaa	CRISPR spacer
aaccttagaagaatcaaaaattttcttagtatctttaa	Protospacer
 ***************************** *******

6. spacer 4.32|1516991|39|LS483487|PILER-CR matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 3, identity: 0.923

aagcagaagaggtggaaattaaaatatctgaaaaatatt	CRISPR spacer
aagcagaagaggtagaaattaaaatatctgaaaaattgt	Protospacer
*************.**********************  *

7. spacer 6.11|1656222|38|LS483487|CRT matches to NZ_AP017969 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-1, complete sequence) position: , mismatch: 3, identity: 0.921

ctcaaaggatagactccacgctttttttcaactgttat	CRISPR spacer
ctcaaaggatagactacacgcttcttttcaactgtttt	Protospacer
*************** *******.************ *

8. spacer 4.34|1517121|40|LS483487|PILER-CR matches to NZ_AP017970 (Fusobacterium varium strain Fv113-g1 plasmid pFV113-g1-2, complete sequence) position: , mismatch: 4, identity: 0.9

tagaaaataatcttacttcacattttaaaaatattatatt	CRISPR spacer
tagaaaataatcttgcttcacattttaaaaatattattga	Protospacer
**************.**********************

9. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223766 (Chlamydia pecorum strain 66P130 plasmid pCpec66P130, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

10. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223767 (Chlamydia pecorum strain 1886 plasmid pCpec1886, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

11. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223768 (Chlamydia pecorum strain CurE11Rec plasmid pCpecCurE11Rec, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

12. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223770 (Chlamydia pecorum strain DbDeUG plasmid pCpecDBDeUG, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

13. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223774 (Chlamydia pecorum strain LW623 plasmid pCpecLW623, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

14. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223775 (Chlamydia pecorum strain Marsbar plasmid pCpecMarsbar, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

15. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223772 (Chlamydia pecorum strain IpTaLe plasmid pCpecIpTaLE, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

16. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223771 (Chlamydia pecorum strain IPA plasmid pCpecIPA, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

17. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223777 (Chlamydia pecorum strain SaK09Ure plasmid pCpecSAK09Ure, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

18. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT352920 (Chlamydia pecorum strain HazBoEye plasmid pCpec, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

19. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223781 (Chlamydia pecorum strain WaB31Ileal plasmid pCpecWAB31Ileal, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

20. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NZ_KT223780 (Chlamydia pecorum strain W73 plasmid pCpecW73, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccatatactcttgtagatcaattta	Protospacer
*** *************.****** * .

21. spacer 4.1|1516091|28|LS483487|CRISPRCasFinder,CRT matches to NC_007900 (Chlamydia felis Fe/C-56 plasmid pCfe1, complete sequence) position: , mismatch: 5, identity: 0.821

tctgcatatactcttgtggatcaaatgg	CRISPR spacer
tctccctatactcttgtggatcaattta	Protospacer
*** * ****************** * .

22. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031220 (Arcobacter mytili LMG 24559 plasmid pAMYT, complete sequence) position: , mismatch: 5, identity: 0.861

atatt-aaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
-tattgaaaaaataaaatttttaaaaaaattaagaac	Protospacer
 **** ******* ****** *************.*

23. spacer 7.4|2206735|32|LS483487|CRT matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

24. spacer 7.4|2206735|32|LS483487|CRT matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

25. spacer 7.4|2206735|32|LS483487|CRT matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

26. spacer 7.4|2206735|32|LS483487|CRT matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

27. spacer 7.4|2206735|32|LS483487|CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

28. spacer 7.4|2206735|32|LS483487|CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

29. spacer 7.4|2206735|32|LS483487|CRT matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

30. spacer 7.4|2206735|32|LS483487|CRT matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

31. spacer 7.4|2206735|32|LS483487|CRT matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 6, identity: 0.812

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ataatttatataatacaattaaataaatgtct	Protospacer
* ******** ***** **********. * *

32. spacer 7.6|2206866|32|LS483487|CRT matches to NZ_CP044550 (Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence) position: , mismatch: 6, identity: 0.812

atctact--gcttttatcttttcagcaccactta	CRISPR spacer
--cgactcggcttttatctgttcatcaccacttg	Protospacer
  * ***  ********** **** ********.

33. spacer 8.2|2420315|32|LS483487|PILER-CR matches to KY296500 (Xenohaliotis phage pCXc-HC2016, complete genome) position: , mismatch: 6, identity: 0.812

aaagtgaatcaggaatgaaaataaaaaatgat	CRISPR spacer
atagaatatcaggaatgaaaagtaaaaatgat	Protospacer
* ** . **************  *********

34. spacer 8.2|2420315|32|LS483487|PILER-CR matches to KY296501 (Xenohaliotis phage pCXc-HR2015, complete genome) position: , mismatch: 6, identity: 0.812

aaagtgaatcaggaatgaaaataaaaaatgat	CRISPR spacer
atagaatatcaggaatgaaaagtaaaaatgat	Protospacer
* ** . **************  *********

35. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223766 (Chlamydia pecorum strain 66P130 plasmid pCpec66P130, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

36. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223767 (Chlamydia pecorum strain 1886 plasmid pCpec1886, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

37. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223768 (Chlamydia pecorum strain CurE11Rec plasmid pCpecCurE11Rec, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

38. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223770 (Chlamydia pecorum strain DbDeUG plasmid pCpecDBDeUG, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

39. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223774 (Chlamydia pecorum strain LW623 plasmid pCpecLW623, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

40. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223775 (Chlamydia pecorum strain Marsbar plasmid pCpecMarsbar, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

41. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223772 (Chlamydia pecorum strain IpTaLe plasmid pCpecIpTaLE, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

42. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223771 (Chlamydia pecorum strain IPA plasmid pCpecIPA, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

43. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223777 (Chlamydia pecorum strain SaK09Ure plasmid pCpecSAK09Ure, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

44. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT352920 (Chlamydia pecorum strain HazBoEye plasmid pCpec, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

45. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223781 (Chlamydia pecorum strain WaB31Ileal plasmid pCpecWAB31Ileal, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

46. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_KT223780 (Chlamydia pecorum strain W73 plasmid pCpecW73, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccatatactcttgtagatcaatttaagg	Protospacer
*** *************.****** * .*

47. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NC_007900 (Chlamydia felis Fe/C-56 plasmid pCfe1, complete sequence) position: , mismatch: 7, identity: 0.774

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
tctccctatactcttgtggatcaatttaaag	Protospacer
*** * ****************** * .*

48. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 7, identity: 0.806

atattaaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
gtattaagaaattaaatttataaaagaatcagtgaa	Protospacer
.******.*****************.***.*. **.

49. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 7, identity: 0.806

atattaaaaaatt-aaatttataaaaaaattaaggag	CRISPR spacer
-catagaaaaattaaaatttataaaaaaattaactaa	Protospacer
 .** .******* *******************  *.

50. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 7, identity: 0.806

atattaaaaaatt-aaatttataaaaaaattaaggag	CRISPR spacer
-catagaaaaattaaaatttataaaaaaattaactaa	Protospacer
 .** .******* *******************  *.

51. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 7, identity: 0.806

atattaaaaaatt-aaatttataaaaaaattaaggag	CRISPR spacer
-catagaaaaattaaaatttataaaaaaattaactaa	Protospacer
 .** .******* *******************  *.

52. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 7, identity: 0.806

atatta-aaaaattaaatttataaaaaaattaaggag	CRISPR spacer
-tataataaaaactaaaattataaaaaaattaatcaa	Protospacer
 *** * *****.**** ***************  *.

53. spacer 5.19|1527343|35|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NC_048074 (Acinetobacter phage vB_AbaM_B09_Aci01-1, complete genome) position: , mismatch: 7, identity: 0.8

-taataatataaaataattatttaagagactaaaaa	CRISPR spacer
cttgtagc-taaaatatttatttaagatactaaaaa	Protospacer
 * .**.. ******* ********** ********

54. spacer 5.19|1527343|35|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 7, identity: 0.8

taataatataaaataattatttaagagactaaaaa	CRISPR spacer
taaaatgcaaaaataactatttaagagactgaaaa	Protospacer
*** *    *******.*************.****

55. spacer 5.19|1527343|35|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to MF919491 (Propionibacterium phage Aquarius, complete genome) position: , mismatch: 7, identity: 0.8

taataatataaaataattatttaagagactaaaaa-	CRISPR spacer
taataatataatataattatataag-tattaaagct	Protospacer
*********** ******** ****  *.****.

56. spacer 5.19|1527343|35|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NC_022337 (Propionibacterium phage PHL071N05, complete genome) position: , mismatch: 7, identity: 0.8

taataatataaaataattatttaagagactaaaaa-	CRISPR spacer
taataatataatataattatataag-tattaaagct	Protospacer
*********** ******** ****  *.****.

57. spacer 5.19|1527343|35|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NC_027630 (Propionibacterium phage Ouroboros, complete genome) position: , mismatch: 7, identity: 0.8

taataatataaaataattatttaagagactaaaaa-	CRISPR spacer
taataatataatataattatataag-tattaaagct	Protospacer
*********** ******** ****  *.****.

58. spacer 6.7|1656422|36|LS483487|CRISPRCasFinder matches to MT774399 (CrAssphage cr109_1, complete genome) position: , mismatch: 7, identity: 0.806

--ttgttatcttaatacttccatcttcattataatgca	CRISPR spacer
aatcattg--ttgatacttccatcttcattataatgta	Protospacer
  *..**.  **.***********************.*

59. spacer 7.4|2206735|32|LS483487|CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 7, identity: 0.781

aaaatttataaaataccattaaataaacctgt-	CRISPR spacer
aaaatatataaaataacattaaa-atattagta	Protospacer
***** ********* ******* * *.. **

60. spacer 7.4|2206735|32|LS483487|CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 7, identity: 0.781

aaaatttataaaataccattaaataaacctgt-	CRISPR spacer
aaaatatataaaataacattaaa-atattagta	Protospacer
***** ********* ******* * *.. **

61. spacer 9.1|2424055|37|LS483487|CRISPRCasFinder matches to NC_010479 (Synechococcus sp. PCC 7002 plasmid pAQ5, complete sequence) position: , mismatch: 7, identity: 0.811

ggaagtagaaaaaatacaaaaaatgattgaatatagt-	CRISPR spacer
agaagtagaaaaaataaaaaaaataatt-attctattt	Protospacer
.*************** *******.*** * * ** *

62. spacer 4.17|1517120|37|LS483487|CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.784

tagaaaataatcttacttcacattttaaaaatattat	CRISPR spacer
ttataaaaaatcttacttcaaattttaaaaacagcat	Protospacer
* . *** ************ **********.* .**

63. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_CP045813 (Bacillus subtilis strain P8_B3 plasmid pBs005, complete sequence) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

64. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_CP041758 (Bacillus sp. KBS0812 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

65. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NC_021809 (Bacillus subtilis subsp. subtilis str. NCIB 3610 plasmid pBS32, complete sequence) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

66. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_CP020103 (Bacillus subtilis strain NCIB 3610 plasmid pBS32, complete sequence) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

67. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NC_015149 (Bacillus subtilis subsp. natto plasmid pLS32 DNA, complete sequence, strain: IAM 11631) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

68. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_CP034485 (Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 strain NCIB 3610 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

69. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_CP045923 (Bacillus subtilis strain P8_B1 plasmid pBs003, complete sequence) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

70. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_CP028216 (Bacillus subtilis strain SRCM102750 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

71. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_CP035398 (Bacillus subtilis strain SRCM103773 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

72. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_CP030938 (Bacillus sp. DM2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

73. spacer 4.18|1516092|31|LS483487|PILER-CR matches to NZ_AP019715 (Bacillus subtilis subsp. subtilis strain NBRC 13719 plasmid pBSU1, complete sequence) position: , mismatch: 8, identity: 0.742

tctgcatatactcttgtggatcaaatggatt	CRISPR spacer
gttgaggatattcttgttgatcaaatggatg	Protospacer
 .** . ***.****** ************

74. spacer 5.1|1526179|35|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to MN694474 (Marine virus AFVG_250M581, complete genome) position: , mismatch: 8, identity: 0.771

tcagaagcttttaaaaatctagaatttggaatata	CRISPR spacer
tatggacagtttaaaaatctaaaatttagaatata	Protospacer
*  *.*   ************.*****.*******

75. spacer 6.3|1656157|35|LS483487|PILER-CR,CRISPRCasFinder matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.771

caagcaat--taaaaaacaaattaaatctttattagg	CRISPR spacer
--gttaatagaaaaaaactaactaaatctttattagg	Protospacer
  . .***   ******* **.***************

76. spacer 6.3|1656157|35|LS483487|PILER-CR,CRISPRCasFinder matches to MT939240 (Enterococcus phage 9181, complete genome) position: , mismatch: 8, identity: 0.771

caagcaattaaaaaacaaattaaatctttattagg	CRISPR spacer
aaagcaattaaaaaagaaattaaaactaacttata	Protospacer
 ************** ******** **   *** .

77. spacer 7.4|2206735|32|LS483487|CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

78. spacer 7.4|2206735|32|LS483487|CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

79. spacer 7.4|2206735|32|LS483487|CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

80. spacer 7.4|2206735|32|LS483487|CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

81. spacer 7.4|2206735|32|LS483487|CRT matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

82. spacer 7.4|2206735|32|LS483487|CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.75

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
aaaatctataaaataacattaaatatatagta	Protospacer
*****.********* ********* *.

83. spacer 7.6|2206866|32|LS483487|CRT matches to NZ_CP026534 (Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence) position: , mismatch: 8, identity: 0.75

atctactgcttttatcttttcagcaccactta	CRISPR spacer
atcaagtgcttttatcttttcagccttgtttt	Protospacer
*** * ****************** ....**

84. spacer 8.2|2420315|32|LS483487|PILER-CR matches to MK448931 (Streptococcus phage Javan414, complete genome) position: , mismatch: 8, identity: 0.75

aaagtgaatcaggaatgaaaataaaaaatgat	CRISPR spacer
ttgttgatacaggaatgaaaataaaaaatcac	Protospacer
  . ***  ******************** *.

85. spacer 4.14|1516926|35|LS483487|CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 9, identity: 0.743

ccttacagttaaatttatatagtttattatttctg	CRISPR spacer
gttaacagttaaatttaaatagttaattatattgt	Protospacer
 .* ************* ****** ***** *.

86. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to CP012553 (Campylobacter sp. RM16192 plasmid p16192, complete sequence) position: , mismatch: 9, identity: 0.75

atattaaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
aaattaaaaaatgaaatttacaaaaaaatcattcta	Protospacer
* ********** *******.********.*    .

87. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.75

atattaaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
atattaaaaaatgaattttataaaaaagaacactac	Protospacer
************ ** ***********.   *  *

88. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 9, identity: 0.75

atattaaaaaattaaatttataaaaaaattaaggag-----	CRISPR spacer
ccattaaaaaattaaaatcataaaaaaa-----gagtgtgt	Protospacer
 .************** *.*********     ***

89. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 9, identity: 0.75

atattaaaaaatt----aaatttataaaaaaattaaggag	CRISPR spacer
----taataggcttataaaatttataaaaaaattaaagag	Protospacer
    *** *...*    *******************.***

90. spacer 5.19|1527343|35|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX258624 (Bacillus thuringiensis strain INTA Fr7-4 plasmid pFR260, complete sequence) position: , mismatch: 9, identity: 0.743

taataatataaaataattatttaagagactaaaaa	CRISPR spacer
aaataaaacaaaataattatttaagagaaaagggg	Protospacer
 ***** *.*******************  *....

91. spacer 5.19|1527343|35|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.743

taataatataaaataattatttaagagactaaaaa	CRISPR spacer
aaataaaacaaaataattatttaagagaaaagggg	Protospacer
 ***** *.*******************  *....

92. spacer 6.2|1656091|36|LS483487|PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.75

taaaatacatggaaaatatttatgaattaaaaaata	CRISPR spacer
gatttcaaatagaaaatattaatgaattaaaaaatg	Protospacer
 *   .* **.********* **************.

93. spacer 6.10|1656157|37|LS483487|CRT matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.757

caagcaat--taaaaaacaaattaaatctttattaggat	CRISPR spacer
--gttaatagaaaaaaactaactaaatctttattaggtt	Protospacer
  . .***   ******* **.*************** *

94. spacer 6.10|1656157|37|LS483487|CRT matches to MT939240 (Enterococcus phage 9181, complete genome) position: , mismatch: 9, identity: 0.757

caagcaattaaaaaacaaattaaatctttattaggat	CRISPR spacer
aaagcaattaaaaaagaaattaaaactaacttataaa	Protospacer
 ************** ******** **   *** .*

95. spacer 7.4|2206735|32|LS483487|CRT matches to NZ_CP042515 (Serratia marcescens strain E28 plasmid pE28_003) position: , mismatch: 9, identity: 0.719

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
tttatttataaaatacaatgaaataaataggg	Protospacer
   ************* ** *******.  *

96. spacer 7.4|2206735|32|LS483487|CRT matches to AY082070 (Bacteriophage phi3626, complete genome) position: , mismatch: 9, identity: 0.719

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
taaatttagaaaataccaataaatataaaaac	Protospacer
 ******* ********* ****** *   ..

97. spacer 7.4|2206735|32|LS483487|CRT matches to NC_003524 (Clostridium phage phi3626, complete genome) position: , mismatch: 9, identity: 0.719

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
taaatttagaaaataccaataaatataaaaac	Protospacer
 ******* ********* ****** *   ..

98. spacer 7.6|2206866|32|LS483487|CRT matches to AB797215 (Klebsiella phage 0507-KN2-1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

atctactgcttttatcttttcagcaccactta	CRISPR spacer
atctactgctttcatcttctcagcatattggg	Protospacer
************.*****.******.  .  .

99. spacer 8.2|2420315|32|LS483487|PILER-CR matches to MF448566 (Lactococcus phage 63302, complete genome) position: , mismatch: 9, identity: 0.719

aaagtgaatcaggaatgaaaataaaaaatgat	CRISPR spacer
atgatattgcaggaaagaaaataaaaaataat	Protospacer
* ..*.   ****** *************.**

100. spacer 5.3|1526308|34|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 10, identity: 0.706

tggctacatatttactagaataatctataagcga	CRISPR spacer
atttaacatatatactagaataatctatatggtt	Protospacer
   . ****** ***************** *

101. spacer 5.3|1526308|34|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 10, identity: 0.706

tggctacatatttactagaataatctataagcga	CRISPR spacer
atttaacatatatactagaataatctatatggtt	Protospacer
   . ****** ***************** *

102. spacer 5.16|1527148|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to L33769 (Lactococcus phage bIL67, complete genome) position: , mismatch: 10, identity: 0.722

agaagagaagttatcaagacagcaaagaactttggc	CRISPR spacer
attaacaaagatatcaagaaagcaaagaactttaaa	Protospacer
*  *. .*** ******** *************..

103. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722

atattaaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
tttaataacaattaaatttataaaaaaaataaaaat	Protospacer
 *    ** ******************* ***..*

104. spacer 5.18|1527278|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038900 (Piscirickettsia salmonis strain Psal-006b plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722

atattaaaaaattaaatttataaaaaaattaaggag	CRISPR spacer
tttaataacaattaaatttataaaaaaaataaaaat	Protospacer
 *    ** ******************* ***..*

105. spacer 6.3|1656157|35|LS483487|PILER-CR,CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 10, identity: 0.714

caagcaattaaaaaacaaattaaatctttattagg	CRISPR spacer
ttaaagtttaaaaaataaattaagtctttattata	Protospacer
. *. . ********.*******.********* .

106. spacer 7.1|2206732|35|LS483487|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

107. spacer 7.1|2206732|35|LS483487|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

108. spacer 7.1|2206732|35|LS483487|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

109. spacer 7.1|2206732|35|LS483487|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

110. spacer 7.1|2206732|35|LS483487|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

111. spacer 7.1|2206732|35|LS483487|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 10, identity: 0.714

cttaaaatttataaaataccattaaataaacctgt	CRISPR spacer
aataaaatctataaaataacattaaatatatagta	Protospacer
  ******.********* ********* *.

112. spacer 7.3|2206864|34|LS483487|CRISPRCasFinder matches to AB797215 (Klebsiella phage 0507-KN2-1 DNA, complete genome) position: , mismatch: 10, identity: 0.706

ttatctactgcttttatcttttcagcaccactta	CRISPR spacer
tcatctactgctttcatcttctcagcatattggg	Protospacer
*.************.*****.******.  .  .

113. spacer 7.3|2206864|34|LS483487|CRISPRCasFinder matches to NZ_CP044550 (Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence) position: , mismatch: 10, identity: 0.706

ttatctactgcttttatcttttcagcaccactta	CRISPR spacer
tccgactcggcttttatctgttcatcaccacttg	Protospacer
*.   . * ********** **** ********.

114. spacer 7.3|2206864|34|LS483487|CRISPRCasFinder matches to NZ_CP026534 (Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence) position: , mismatch: 10, identity: 0.706

ttatctactgcttttatcttttcagcaccactta	CRISPR spacer
gaatcaagtgcttttatcttttcagccttgtttt	Protospacer
  *** * ****************** ....**

115. spacer 7.4|2206735|32|LS483487|CRT matches to NZ_CP045225 (Clostridioides difficile strain TW11 plasmid p_TW11, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
gtcgaatacaaaataccattaaatagacctaa	Protospacer
.  .  **.****************.****.

116. spacer 7.4|2206735|32|LS483487|CRT matches to NC_017296 (Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ttcatttataaaatacaataaaataaggagct	Protospacer
   ************* ** ******.    *

117. spacer 7.4|2206735|32|LS483487|CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt-----	CRISPR spacer
ggtatttataaaatacgataaaataa-----taaata	Protospacer
.. ************* ** ******     *

118. spacer 7.4|2206735|32|LS483487|CRT matches to NC_021183 (Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ttattttatgaaataccattcaataaattata	Protospacer
  * *****.********** ******..

119. spacer 7.4|2206735|32|LS483487|CRT matches to NC_015686 (Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ttcatttataaaatacaataaaataaggagct	Protospacer
   ************* ** ******.    *

120. spacer 7.4|2206735|32|LS483487|CRT matches to NC_001988 (Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence) position: , mismatch: 10, identity: 0.688

aaaatttataaaataccattaaataaacctgt	CRISPR spacer
ttcatttataaaatacaataaaataaggagct	Protospacer
   ************* ** ******.    *

121. spacer 5.14|1527018|36|LS483487|PILER-CR,CRISPRCasFinder,CRT matches to NC_019677 (Nostoc sp. PCC 7524 plasmid pNOS7524.01, complete sequence) position: , mismatch: 11, identity: 0.694

ttttttgctttttctctctcttttccccagtaataa	CRISPR spacer
aaacaggttttttctctcactttcccccagtaatcc	Protospacer
   .  *.********** ****.**********

122. spacer 6.3|1656157|35|LS483487|PILER-CR,CRISPRCasFinder matches to LC425525 (Uncultured phage DNA, contig: NODE869) position: , mismatch: 11, identity: 0.686

caagcaattaaaaaacaaattaaatctttattagg	CRISPR spacer
ggctttcctagaaaacaaattaaatctttaataga	Protospacer
 .  .  .**.******************* ***.

123. spacer 6.3|1656157|35|LS483487|PILER-CR,CRISPRCasFinder matches to NZ_CP015630 (Borrelia turicatae strain BTE5EL plasmid lp159) position: , mismatch: 11, identity: 0.686

caagcaattaaaaaacaaattaaatctttattagg	CRISPR spacer
agtaaaattaaaaaacaattaaaatctttactctt	Protospacer
 . . ************* * *********.*

124. spacer 6.9|1656091|38|LS483487|CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 11, identity: 0.711

taaaatacatggaaaatatttatgaattaaaaaataat	CRISPR spacer
gatttcaaatagaaaatattaatgaattaaaaaatgtg	Protospacer
 *   .* **.********* **************.

125. spacer 6.10|1656157|37|LS483487|CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 12, identity: 0.676

caagcaattaaaaaacaaattaaatctttattaggat	CRISPR spacer
ttaaagtttaaaaaataaattaagtctttattatatc	Protospacer
. *. . ********.*******.********* . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

297449 : 309360

Staphylococcus_phage(40.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQI99822.1\|297449_299312_+	Sensor protein kinase walK	A0A1V0SGX0	Hokovirus	3.0e-24	26.7
SQI99825.1\|299331_299709_+	Transcriptional regulatory protein YycF	A0A220YL79	Alteromonas_virus	1.0e-08	27.0
SQI99827.1\|299705_300377_+	Staphylococcal respiratory response protein A	A0A1V0SGR9	Hokovirus	3.5e-07	30.3
SQI99829.1\|300386_301529_+	Sensor protein KdpD	NA	NA	NA	NA
SQI99831.1\|301592_302426_-	Glycyl-glycine endopeptidase ALE-1 precursor	I2E8W3	Clostridium_phage	4.9e-19	54.3
SQI99833.1\|302443_303778_-	Staphylococcal virulence regulator protein A	NA	NA	NA	NA
SQI99835.1\|304155_304617_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-41	55.7
SQI99836.1\|304634_305696_+	Riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	4.5e-49	33.5
SQI99838.1\|305704_306361_+	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	2.6e-31	38.1
SQI99840.1\|306378_307572_+	Riboflavin biosynthesis protein ribBA	A0A2H4PQS2	Staphylococcus_phage	1.8e-115	53.9
SQI99841.1\|307685_308627_+	Ribosomal large subunit pseudouridine synthase D	A0A2H4UV25	Bodo_saltans_virus	3.3e-11	32.3
SQI99867.1\|308640_309360_+	Ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	2.3e-28	43.0

DBSCAN-SWA_2

1110031 : 1117938

Geobacillus_virus(50.0%)

portal,terminase,head,protease,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ00984.1\|1110031_1110487_+\|terminase	Phage terminase, small subunit	NA	NA	NA	NA
SQJ00986.1\|1110488_1112204_+\|terminase	Phage terminase-like protein, large subunit	A6M948	Geobacillus_virus	6.4e-130	44.1
SQJ00989.1\|1112200_1113475_+\|portal	phage portal protein, HK97 family	A6M949	Geobacillus_virus	6.5e-87	45.0
SQJ00990.1\|1113443_1114202_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A0A7RTN2	Clostridium_phage	6.0e-48	47.0
SQJ00991.1\|1114202_1115354_+\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	Q9ZXF6	Bacillus_phage	1.7e-73	46.8
SQJ00992.1\|1115366_1115648_+	uncharacterized phage protein (possible DNA packaging)	A6M953	Geobacillus_virus	2.8e-06	42.6
SQJ00993.1\|1115648_1115981_+\|head,tail	Bacteriophage head-tail adaptor	NA	NA	NA	NA
SQJ00994.1\|1115984_1116392_+	Uncharacterised protein	NA	NA	NA	NA
SQJ00997.1\|1116401_1116845_+	Uncharacterised protein	NA	NA	NA	NA
SQJ00998.1\|1116846_1117938_+\|tail	Phage tail sheath protein	A0A090D804	Clostridium_phage	1.0e-24	27.6

DBSCAN-SWA_3

1364938 : 1370701

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ02294.1\|1364938_1365418_+	N5-carboxyaminoimidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.8e-27	47.4
SQJ02295.1\|1365481_1366198_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	4.0e-41	43.2
SQJ02296.1\|1366197_1367595_+	Amidophosphoribosyltransferase precursor	A0A1B1ISH6	uncultured_Mediterranean_phage	8.8e-61	34.6
SQJ02297.1\|1367617_1368619_+	Phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FC27	Synechococcus_phage	1.4e-65	44.0
SQJ02298.1\|1368606_1369182_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.0e-24	37.8
SQJ02299.1\|1369198_1370701_+	Bifunctional purine biosynthesis protein PurH	Q58MG4	Prochlorococcus_phage	3.6e-68	48.0

DBSCAN-SWA_4

1808791 : 1852118

Fusobacterium_phage(71.43%)

portal,tail,protease,tRNA,plate,capsid,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ03920.1\|1808791_1809871_+\|tRNA	tRNA-specific 2-thiouridylase mnmA	NA	NA	NA	NA
SQJ03921.1\|1809895_1810672_+	pyruvate flavodoxin oxidoreductase subunit delta	NA	NA	NA	NA
SQJ03922.1\|1810880_1812560_+	Hydroxylamine reductase	NA	NA	NA	NA
SQJ03923.1\|1812744_1814151_+	Fumarate reductase flavoprotein subunit precursor	A0A2P0ZL82	Lactobacillus_phage	4.7e-54	34.8
SQJ03924.1\|1814343_1816053_+	Fumarate reductase flavoprotein subunit precursor	A0A2P0ZL82	Lactobacillus_phage	2.8e-69	31.2
SQJ03925.1\|1816127_1818806_-	Chaperone protein ClpB	A0A0A8J958	Klebsiella_phage	5.5e-120	36.6
SQJ03926.1\|1819087_1819585_+	Glucose-specific phosphotransferase enzyme IIA component	NA	NA	NA	NA
SQJ03927.1\|1819677_1820907_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03928.1\|1821271_1821877_-	Phosphatase yihX	NA	NA	NA	NA
SQJ03929.1\|1821973_1822768_+	Putative hydrolase M6_Spy0533	NA	NA	NA	NA
SQJ03930.1\|1822891_1824430_+	GMP synthase [glutamine-hydrolyzing]	NA	NA	NA	NA
SQJ03931.1\|1824555_1825005_-\|holin	Phage-related holin (Lysis protein)	A0A2K5B2A2	Erysipelothrix_phage	1.2e-16	38.5
SQJ03932.1\|1825017_1825254_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03933.1\|1825265_1825829_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03934.1\|1825843_1826362_-	Uncharacterised protein	A0A0E3U2P7	Fusobacterium_phage	5.1e-06	36.3
SQJ03935.1\|1826371_1827346_-	site-specific tyrosine recombinase XerC	A0A0E3U2P3	Fusobacterium_phage	4.5e-56	39.8
SQJ03936.1\|1828133_1829285_-	Uncharacterised protein	A0A0E3Y5F3	Fusobacterium_phage	7.0e-48	37.3
SQJ03937.1\|1829281_1829920_-\|tail	Bacteriophage P2-related tail formation protein	A0A0E3U255	Fusobacterium_phage	1.5e-44	44.8
SQJ03938.1\|1829912_1831010_-	Uncharacterized homolog of phage Mu protein gp47	A0A0E3U2P1	Fusobacterium_phage	1.7e-115	56.3
SQJ03939.1\|1831002_1831308_-	Uncharacterised protein	A0A0E3Y6F8	Fusobacterium_phage	6.9e-19	53.7
SQJ03940.1\|1831307_1831700_-	Phage protein U	A0A0E3Y6A2	Fusobacterium_phage	7.0e-32	54.6
SQJ03941.1\|1831708_1832206_-\|plate	Phage P2 baseplate assembly protein gpV	A0A0E3Y4V1	Fusobacterium_phage	2.7e-41	50.3
SQJ03942.1\|1832202_1833291_-	Phage protein D	A0A0E3U253	Fusobacterium_phage	1.3e-88	44.3
SQJ03943.1\|1833292_1833502_-	Uncharacterised protein	A0A0C5AEF4	Bacteriophage	9.8e-09	38.1
SQJ03944.1\|1833488_1836551_-\|tail	Phage-related minor tail protein	A0A0E3U2N9	Fusobacterium_phage	7.5e-105	38.3
SQJ03945.1\|1836615_1837008_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03946.1\|1837090_1837909_-	Uncharacterized phage-encoded protein	A0A2H4JAT4	uncultured_Caudovirales_phage	3.0e-37	37.6
SQJ03947.1\|1837922_1838222_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03948.1\|1838345_1838519_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03949.1\|1838771_1839101_-	Uncharacterised protein	A0A0E3Y5E7	Fusobacterium_phage	2.6e-24	60.4
SQJ03950.1\|1839109_1839646_-\|tail	phage major tail tube protein	A0A0E3Y6F4	Fusobacterium_phage	1.3e-49	57.0
SQJ03951.1\|1839662_1841078_-\|tail	Phage tail sheath protein	A0A0E3U251	Fusobacterium_phage	4.4e-177	62.2
SQJ03952.1\|1841077_1841350_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03953.1\|1841359_1841821_-	Uncharacterised protein	A0A0E3Y698	Fusobacterium_phage	2.0e-30	43.1
SQJ03954.1\|1841817_1842384_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03955.1\|1842383_1842734_-	Uncharacterised protein	A0A0E3Y618	Fusobacterium_phage	3.7e-16	45.1
SQJ03956.1\|1842708_1842939_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03957.1\|1842990_1844016_-\|capsid	Phage major capsid protein E	A0A0E3U2N5	Fusobacterium_phage	3.9e-98	54.4
SQJ03958.1\|1844027_1844354_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03959.1\|1844368_1845472_-\|protease	ATP-dependent Clp protease proteolytic subunit 1	A0A0E3Y6E9	Fusobacterium_phage	1.0e-67	41.5
SQJ03960.1\|1845464_1847000_-\|portal	phage portal protein, lambda family	A0A0E3Y693	Fusobacterium_phage	2.1e-180	64.6
SQJ03961.1\|1847003_1847222_-	Uncharacterised protein	A0A0C5AEE0	Bacteriophage	3.0e-08	45.6
SQJ03962.1\|1847221_1848979_-\|tail	Bacteriophage tail assembly protein	A0A0E3U2N4	Fusobacterium_phage	1.0e-247	70.3
SQJ03963.1\|1848959_1849415_-	Uncharacterised protein	A0A0E3Y4U4	Fusobacterium_phage	1.6e-32	50.3
SQJ03964.1\|1849526_1850039_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03965.1\|1850197_1851220_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03966.1\|1851209_1851530_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03967.1\|1851575_1852118_-	N-acetylmuramoyl-L-alanine amidase CwlD	A0A0U4I901	Vibrio_phage	1.0e-20	35.1

DBSCAN-SWA_5

1975579 : 2034898

Clostridium_phage(36.36%)

portal,terminase,protease,tRNA,tail,holin,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ04234.1\|1975579_1976749_-\|tRNA	Queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.4e-91	47.4
SQJ04235.1\|1976767_1978948_-	GTP pyrophosphokinase	J9Q7H7	Salmonella_phage	7.1e-09	34.1
SQJ04236.1\|1979046_1979559_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.7e-30	44.2
SQJ04237.1\|1979573_1980422_-	Flp pilus assembly protein TadD, contains TPR repeats	NA	NA	NA	NA
SQJ04238.1\|1980418_1981129_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQJ04239.1\|1981121_1982396_-	Putative Mg2+ and Co2+ transporter CorB	NA	NA	NA	NA
SQJ04240.1\|1982427_1982871_-	putative manganese-dependent inorganic pyrophosphatase	M1NSC5	Streptococcus_phage	4.8e-05	26.6
SQJ04421.1\|1983078_1983534_-	Biotin carboxyl carrier protein of acetyl-CoA carboxylase	NA	NA	NA	NA
SQJ04666.1\|1983547_1983997_-	ACT domain-containing protein	NA	NA	NA	NA
SQJ04725.1\|1984028_1984877_-	Bifunctional protein FolD	A0A249XZQ2	Enterococcus_phage	2.2e-38	42.3
SQJ04729.1\|1984900_1985833_-\|tRNA	Methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	3.7e-07	45.6
SQJ04730.1\|1985847_1986315_-	Transcriptional repressor NrdR	NA	NA	NA	NA
SQJ04731.1\|1986324_1986798_-	EIIABC-Fru	NA	NA	NA	NA
SQJ04737.1\|1986790_1987504_-	Recombination protein O	NA	NA	NA	NA
SQJ04739.1\|1987503_1988067_-	Outer membrane lipoprotein-sorting protein	NA	NA	NA	NA
SQJ04740.1\|1988063_1988882_-	rod shape-determining protein MreC	NA	NA	NA	NA
SQJ04741.1\|1988878_1989991_-	Peptidase T	NA	NA	NA	NA
SQJ04742.1\|1990173_1991151_-	Fructose-bisphosphate aldolase	NA	NA	NA	NA
SQJ04743.1\|1991224_1991698_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04744.1\|1991681_1992953_-\|tRNA	Serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-93	53.8
SQJ04745.1\|1992984_1993578_-	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQJ04746.1\|1993661_1994672_-	UDP-3-O-acylglucosamine N-acyltransferase	NA	NA	NA	NA
SQJ04747.1\|1994692_1995172_-	periplasmic chaperone	NA	NA	NA	NA
SQJ04748.1\|1995201_1997283_-	Omp85	NA	NA	NA	NA
SQJ04749.1\|1997298_2001741_-	Uncharacterized protein involved in outer membrane biogenesis	NA	NA	NA	NA
SQJ04750.1\|2001758_2002460_-	Ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA
SQJ04751.1\|2002462_2004349_-	Glucose-inhibited division protein A	NA	NA	NA	NA
SQJ04752.1\|2004376_2005033_-	Ktr system potassium uptake protein A	NA	NA	NA	NA
SQJ04753.1\|2005059_2006397_-	Ktr system potassium uptake protein B	NA	NA	NA	NA
SQJ04754.1\|2006580_2007822_-	Peptidase T	NA	NA	NA	NA
SQJ04755.1\|2007899_2009288_-	Multidrug export protein mepA	NA	NA	NA	NA
SQJ04756.1\|2009325_2009760_-	transcriptional repressor MprA	NA	NA	NA	NA
SQJ04757.1\|2010068_2010539_-\|holin	Phage-related holin (Lysis protein)	M9Q253	Clostridium_phage	1.3e-16	39.4
SQJ04758.1\|2010552_2011041_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04759.1\|2011053_2011626_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04760.1\|2011669_2012194_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04761.1\|2012266_2012974_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04762.1\|2012986_2013538_-	Uncharacterized protein conserved in bacteria (DUF2313)	A0A0A7RTU9	Clostridium_phage	2.9e-28	41.9
SQJ04763.1\|2013538_2014597_-	Uncharacterized homolog of phage Mu protein gp47	A0A0A7RUN3	Clostridium_phage	5.4e-63	40.5
SQJ04764.1\|2014593_2015046_-	Protein of uncharacterised function (DUF2634)	NA	NA	NA	NA
SQJ04765.1\|2015024_2015579_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04766.1\|2015575_2016553_-	Phage late control gene D protein (GPD)	NA	NA	NA	NA
SQJ04767.1\|2016545_2016986_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04768.1\|2016999_2018871_-\|tail	Phage-related minor tail protein	A0A0E3Y5G6	Fusobacterium_phage	3.7e-30	33.7
SQJ04769.1\|2018979_2019126_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04770.1\|2019277_2019691_-	Phage XkdN-like protein	NA	NA	NA	NA
SQJ04771.1\|2019709_2020144_-	Phage-like element PBSX protein xkdM	NA	NA	NA	NA
SQJ04772.1\|2020156_2021221_-\|tail	Phage tail sheath protein	A0A0A8WJL8	Clostridium_phage	4.6e-54	35.5
SQJ04773.1\|2021213_2021666_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04774.1\|2021665_2022085_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04775.1\|2022090_2022426_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04776.1\|2022426_2022705_-	uncharacterized phage protein (possible DNA packaging)	A0A0A7S0C9	Clostridium_phage	6.0e-14	46.2
SQJ04777.1\|2022716_2023829_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	Q2I8F7	Bacillus_phage	9.5e-42	31.7
SQJ04778.1\|2023831_2024587_-\|protease	ATP-dependent Clp protease proteolytic subunit 2	J9QE31	Clostridium_phage	7.4e-38	38.9
SQJ04779.1\|2024564_2025785_-\|portal	phage portal protein, HK97 family	A6M949	Geobacillus_virus	1.0e-97	47.5
SQJ04780.1\|2025807_2027514_-\|terminase	Phage terminase-like protein, large subunit	A0A0A7RVS5	Clostridium_phage	3.6e-157	49.7
SQJ04781.1\|2027517_2028009_-\|terminase	Phage terminase, small subunit	A0A0S2GLF2	Bacillus_phage	1.6e-17	34.2
SQJ04782.1\|2028099_2028531_-	Uncharacterised protein	I2E8Y8	Clostridium_phage	4.5e-08	36.4
SQJ04800.1\|2028766_2029177_-	RNA polymerase sigma factor, sigma-70 family	A0A2K5B275	Erysipelothrix_phage	1.4e-06	26.5
SQJ04803.1\|2029179_2029431_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04805.1\|2029427_2029952_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04807.1\|2029952_2030132_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04809.1\|2030128_2030248_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04811.1\|2030258_2031197_-	Modification methylase MboII	G1D1F5	Mycobacterium_virus	3.8e-52	39.0
SQJ04813.1\|2031197_2031953_-	Holliday junction resolvase	NA	NA	NA	NA
SQJ04815.1\|2031936_2032143_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04817.1\|2032585_2034898_-	DNA primase (bacterial type)	A0A1B1IP14	uncultured_Mediterranean_phage	6.8e-18	27.1

DBSCAN-SWA_6

2383631 : 2401538

Fusobacterium_phage(78.95%)

head,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ08805.1\|2383631_2384120_-\|holin	Phage-related holin (Lysis protein)	D7RWK5	Brochothrix_phage	2.0e-12	38.8
SQJ08807.1\|2384123_2384375_-	Uncharacterised protein	NA	NA	NA	NA
SQJ08811.1\|2384377_2384761_-	Uncharacterised protein	A0A076YI70	Citrobacter_phage	1.1e-18	41.8
SQJ08824.1\|2384776_2385379_-	Uncharacterised protein	NA	NA	NA	NA
SQJ08836.1\|2385391_2386087_-	Uncharacterised protein	A0A0E3Y6G8	Fusobacterium_phage	6.4e-12	31.1
SQJ08839.1\|2386087_2386618_-	Uncharacterised protein	A0A0E3Y5G1	Fusobacterium_phage	4.5e-34	43.0
SQJ08843.1\|2386622_2387777_-	Uncharacterized homolog of phage Mu protein gp47	A0A0E3Y634	Fusobacterium_phage	2.4e-104	51.5
SQJ08847.1\|2387773_2388124_-	Uncharacterised protein	A0A0E3U2P9	Fusobacterium_phage	1.2e-19	58.9
SQJ08849.1\|2388133_2388787_-	Uncharacterised protein	A0A0E3U262	Fusobacterium_phage	3.2e-29	46.0
SQJ08851.1\|2388792_2389605_-	Uncharacterised protein	A0A0E3Y4V7	Fusobacterium_phage	6.0e-54	41.0
SQJ08857.1\|2389601_2389934_-	Uncharacterised protein	A0A0E3Y6B2	Fusobacterium_phage	2.5e-22	46.3
SQJ08861.1\|2389930_2390506_-	Uncharacterised protein	A0A0E3U263	Fusobacterium_phage	7.3e-22	49.6
SQJ08865.1\|2390498_2392193_-	Uncharacterised protein	A0A0E3Y5G6	Fusobacterium_phage	5.6e-86	41.0
SQJ08912.1\|2392381_2392834_-	Uncharacterised protein	A0A0E3Y638	Fusobacterium_phage	1.6e-19	35.3
SQJ08930.1\|2392837_2393281_-	Uncharacterised protein	NA	NA	NA	NA
SQJ08933.1\|2393293_2394292_-	Protein of uncharacterised function (DUF3383)	A0A0E3U2Q2	Fusobacterium_phage	6.6e-95	54.7
SQJ08934.1\|2394284_2394785_-	Uncharacterised protein	NA	NA	NA	NA
SQJ08935.1\|2394777_2395110_-	Uncharacterised protein	NA	NA	NA	NA
SQJ08936.1\|2395112_2395565_-	Uncharacterised protein	A0A0E3Y6H6	Fusobacterium_phage	1.3e-26	41.4
SQJ08937.1\|2395564_2395963_-	Uncharacterised protein	A0A0E3Y5G9	Fusobacterium_phage	9.3e-24	47.1
SQJ08938.1\|2395964_2396135_-	Uncharacterised protein	NA	NA	NA	NA
SQJ08939.1\|2396136_2397249_-	Uncharacterised protein	A0A2H4J2M3	uncultured_Caudovirales_phage	7.0e-37	31.3
SQJ08940.1\|2397265_2397856_-	Phage minor structural protein GP20	NA	NA	NA	NA
SQJ08941.1\|2397855_2398644_-\|head	phage head morphogenesis protein, SPP1 gp7 family	A0A0E3Y641	Fusobacterium_phage	5.7e-41	38.1
SQJ08942.1\|2398643_2400137_-	Uncharacterised protein	A0A0E3Y4W1	Fusobacterium_phage	1.9e-93	39.9
SQJ08943.1\|2400248_2401538_-\|terminase	phage terminase, large subunit, PBSX family	S6AVV7	Thermus_phage	3.0e-124	53.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483487

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection