CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483486	Haemophilus influenzae strain NCTC12194 genome assembly, chromosome: 1	3 crisprs	DinG,DEDDh,cas3,WYL	2	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483486_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483486_1

381150-381234

Orphan

Consensus_repeat	Method
AAGCCCACCCTACAACTACTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483486_1

>merge|LS483486|1|381150-381234|CRISPRCasFinder
AAGCCCACCCTACAACTACTAAAGCCCACCAAAATATCTTACGATTGTTTGTTGGTGGGCTAAAGCCCACCCTACAACTACTAAT

>LS483486|1|1|381150-381234|CRISPRCasFinder
AAGCCCACCCTACAACTACTAAA	GCCCACCAAAATATCTTACGATTGTTTGTTGGTGGGCTA
AAGCCCACCCTACAACTACTAAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483486.1\|SQJ01048.1\|373803_374244_-\|FMN-binding-protein-MioC	unknown	unknown	gnl\|CDD\|181608
LS483486.1\|SQJ01056.1\|381404_384587_+\|hemoglobin-binding-protein	unknown	unknown	gnl\|CDD\|273799
LS483486.1\|SQJ01063.1\|389330_390083_+\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|378919
LS483486.1\|SQJ01047.1\|373372_373807_-\|D-tyr-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
LS483486.1\|SQJ01049.1\|374389_374560_-\|cell-division-protein-ZapB	unknown	unknown	gnl\|CDD\|368701
LS483486.1\|SQJ01065.1\|390757_391522_-\|UDP-glucose-Lipooligosaccharide-beta-1-4-glucosyltransferase	unknown	unknown	gnl\|CDD\|133005
LS483486.1\|SQJ01061.1\|387957_388509_+\|ribosome-maturation-factor	unknown	unknown	gnl\|CDD\|182603
LS483486.1\|SQJ01052.1\|376213_376534_+\|flavodoxin	unknown	unknown	gnl\|CDD\|226080
LS483486.1\|SQJ01062.1\|388512_389319_+\|dehydroshikimate-reductase,-NAD(P)-binding	unknown	unknown	gnl\|CDD\|161904
LS483486.1\|SQJ01046.1\|372591_373068_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LS483486.1\|SQJ01054.1\|377645_379304_-\|ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
LS483486.1\|SQJ01058.1\|385022_385319_+\|putative-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
LS483486.1\|SQJ01057.1\|384847_385030_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|227024
LS483486.1\|SQJ01064.1\|390197_390761_+\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|377025
LS483486.1\|SQJ01051.1\|375917_376226_+\|putative-HTH-type-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
LS483486.1\|SQJ01060.1\|387405_387942_+\|DNA-topoisomerase	unknown	unknown	gnl\|CDD\|223625
LS483486.1\|SQJ01050.1\|374721_375723_+\|fructose-1,6-bisphosphatase-II	unknown	unknown	gnl\|CDD\|129430
LS483486.1\|SQJ01055.1\|379296_381042_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|227321
LS483486.1\|SQJ01053.1\|376530_377562_+\|putative-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226080
LS483486.1\|SQJ01059.1\|385479_387396_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236729

Protein	Function_ID	Function_description	E-value
LS483486.1\|SQJ01048.1\|373803_374244_-\|FMN-binding-protein-MioC	gnl\|CDD\|181608	PRK09004, PRK09004, FMN-binding protein MioC; Provisional.	5.81551e-89
LS483486.1\|SQJ01056.1\|381404_384587_+\|hemoglobin-binding-protein	gnl\|CDD\|273799	TIGR01776, Lactoferrin-binding_protein_A, TonB-dependent lactoferrin and transferrin receptors. This family of TonB-dependent receptors are responsible for import of iron from the mammalian iron carriers lactoferrin and transferrin across the outer membrane. These receptors are found only in bacteria which can infect mammals such as Moraxella, Mannheimia, Neisseria, Actinobacillus, Pasteurella, Haemophilus and Histophilus species. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	3.43238e-101
LS483486.1\|SQJ01063.1\|389330_390083_+\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|378919	pfam12686, DUF3800, Protein of unknown function (DUF3800). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 215 and 302 amino acids in length. There is a DE motif at the N-terminus and a QXXD motif at the C-terminus that may be functionally important.	0.00880889
LS483486.1\|SQJ01047.1\|373372_373807_-\|D-tyr-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	1.44217e-96
LS483486.1\|SQJ01049.1\|374389_374560_-\|cell-division-protein-ZapB	gnl\|CDD\|368701	pfam06005, ZapB, Cell division protein ZapB. ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation.	0.00012723
LS483486.1\|SQJ01065.1\|390757_391522_-\|UDP-glucose-Lipooligosaccharide-beta-1-4-glucosyltransferase	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	1.39254e-96
LS483486.1\|SQJ01061.1\|387957_388509_+\|ribosome-maturation-factor	gnl\|CDD\|182603	PRK10634, PRK10634, L-threonylcarbamoyladenylate synthase type 1 TsaC.	8.25349e-87
LS483486.1\|SQJ01052.1\|376213_376534_+\|flavodoxin	gnl\|CDD\|226080	COG3550, HipA, Toxin module HipA, protein kinase of phosphatidylinositol 3/4-kinase superfamily [General function prediction only].	5.59125e-25
LS483486.1\|SQJ01062.1\|388512_389319_+\|dehydroshikimate-reductase,-NAD(P)-binding	gnl\|CDD\|161904	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. [Amino acid biosynthesis, Aromatic amino acid family].	2.05126e-133
LS483486.1\|SQJ01046.1\|372591_373068_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	2.42496e-105
LS483486.1\|SQJ01054.1\|377645_379304_-\|ABC-transporter,-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.89056e-126
LS483486.1\|SQJ01058.1\|385022_385319_+\|putative-HTH-type-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	4.09836e-10
LS483486.1\|SQJ01057.1\|384847_385030_+\|Uncharacterised-protein	gnl\|CDD\|227024	COG4679, COG4679, Phage-related protein [Function unknown].	1.66598e-08
LS483486.1\|SQJ01064.1\|390197_390761_+\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.48267e-117
LS483486.1\|SQJ01051.1\|375917_376226_+\|putative-HTH-type-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000139969
LS483486.1\|SQJ01060.1\|387405_387942_+\|DNA-topoisomerase	gnl\|CDD\|223625	COG0551, TopA, Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair].	1.45844e-31
LS483486.1\|SQJ01050.1\|374721_375723_+\|fructose-1,6-bisphosphatase-II	gnl\|CDD\|129430	TIGR00330, Fructose-16-bisphosphatase_class_2, fructose-1,6-bisphosphatase, class II. This model represents GlpX, one of three classes of bacterial fructose-1,6-bisphosphatases. This form is homodimeric and Mn2+-dependent, and only very distantly related to the class I fructose-1,6-bisphosphatase, the product of the fbp gene, which is homotetrameric and Mg2+-dependent. A third class is found as one of two types in Bacillus subtilis. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase. [Energy metabolism, Pentose phosphate pathway].	0
LS483486.1\|SQJ01055.1\|379296_381042_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
LS483486.1\|SQJ01053.1\|376530_377562_+\|putative-DNA-binding-transcriptional-regulator	gnl\|CDD\|226080	COG3550, HipA, Toxin module HipA, protein kinase of phosphatidylinositol 3/4-kinase superfamily [General function prediction only].	3.42608e-84
LS483486.1\|SQJ01059.1\|385479_387396_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0

>LS483486.1|SQJ01055.1|379296_381042_-|ABC-transporter-ATP-binding-protein
MMIDKRLINTVADSKKWIGVTVLWNWVALVGGIISAVVFSYILQAAYFHELSLLSAVILGILLIAALALRAFAGKKSVQASYFASTKVKHELRSLIYRKLASMPLNQVNQQSTSSIIQVASEGVEQLEIYFGRYLPQLFYSLLAPLTLFAFLIFFSFKTAVILLICVPLIPMSIIAVNKIAKKLLAKYWSIYVGLGSSFLDNLQGLITLKIYQDDAYKAKEMDKEAEHFRKITMKVLTMQLNSVSLMDLLAYGGAAIGILTALLQFQDAQLSVLGVILFILLSSEFFIPLRLLGSFFHVAMNGKAASDKIFTLLDTPVETQQSAVNFEAKNNLQVEIKDLHFSYSEEKPAITGLDLSILPNQLSVFVGKSGCGKSTLVSLLMGFNKAQQGEILFNGQNALNIDRTSFYQKVSLVSHSSYVFKGSLRENMTMAKIDATDEQIYACLEQVNLAHFVRENGGLDMQLLSRGANLSGGQIQRLALARALLHNAELYIFDEATSNIDVESEEIILQFIQQFKQQKTIVMISHRLANAVNADCINVLDQGKLIEQGTHKELMEKQGAYAEMFQQQKDLEQIREVENA
>LS483486.1|SQJ01054.1|377645_379304_-|ABC-transporter,-ATP-binding-protein
MRKNGFVVMGHLLKLVTPLAHIMAFTITMGTLGFLAAIFIMVLGAMGLVNLLNFDTHLSFSGILTALIVLAVARGALRYLEQMSGHYIAFKLLALLRDKVFSSLRRLAFVKLQDKQAGQLVSLVTNDIELLEVFYAHTIAPIMIAFFTSAILLLVFAQLSSWFVLVALAAYLTVGVILPIITTKLAREDGRRYRELVGEMNDFFLDSVRGMKEIQLFGYAKQRLDEIQQRSQKIDTAFERIKDQEAKVRVYTEVAVSVFNIIMLFTGLILFSLDKIDFAAFLIGVILLMSSYGPVIALSNLSSNLLQTLASGERVLSLLAEEPELKDVESAVDLKEVSCIDVENVNFAYGEEQILSDVSLSVKKGEILGIHGRSGSGKSTLLKLLMRFYDPKSGSIKINGETLPNINTCSLRDNMAYITQQTYIFNETIEENIRLARRDATLEEIMEAAKKASIHDFILSLPQGYQTKMTELGGNLSDGEKQRIGIARAFLHNAPIILLDEPTSNLDSLNEAMILKSLLDAKAEKLIILVSHRQSTMAICDQVIGIENGRMS
>LS483486.1|SQJ01053.1|376530_377562_+|putative-DNA-binding-transcriptional-regulator
MNFCRILLKPLKKNEVHSGYSTKGLHYLTGNKNFNPELPFSRQEFITVKPQKQQGMSISGFQPKLQLIIKDEHFDSVNQQGNYILKPSPEEYPFLAENEHATMRIMKELGFDVPENGLVSFAGEQNHKEFAFVIKRFDRDEQQTEIHQEQLDGAMNIRDKYGKIGADNEQYVSYEQIAKFILQHTENHLAQQREIFRRIIYAYLLGNNDLHLRNFSFIYPKNSHPKLAPIYDFVSVSPYPEIFNSTLLALPLLAREEGNATLAKGFNTQYGEYIGDDFVEFGENIGLNKNVIIQKLIPEITQEKEKVEQIYSQSFMPQPHIDCVLKTYRKRLALLNVLNEPEL
>LS483486.1|SQJ01052.1|376213_376534_+|flavodoxin
MRDLVRSGKVFLYGEFIGLLREDHHGFHFSYNPDYQGIPLSLSFPIEQSPFHSDTLFPYFASLVPEGWLKHKYALHQRIDEGDMFRFLLNNGENMLGAVQIQEEKQ
>LS483486.1|SQJ01051.1|375917_376226_+|putative-HTH-type-transcriptional-regulator
MNNLSAQLENQIDELKKLQKSVITYEQAQRQQLYAGKITDLKAFGKMLNDKRKSLGIELSMLELQTGVSISTLNRLFQDPSQVRFTTVFLVAQTLGVSLCAI
>LS483486.1|SQJ01050.1|374721_375723_+|fructose-1,6-bisphosphatase-II
MNRALAIEFSRVTEAAALAAYTWLGRGDKNAADDAAVKAMRYMLNLIHMDAEIVIGEGEIDEAPMLYVGEKVGSGLGELVSIAVDPIDGTRMTAMGQSNAISVLAAGGKNTFLKAPDMYMEKLVVGSNVKGIIDLNLPLEQNLRRIASKLGKSLSDLTVMVLAKPRHDAVIKQIHNLGAKVLAIPDGDVAGSVLCCLPDAEVDLLYGIGGAPEGVAAAAAIRALGGDMQARLIPRNEVKSDTEENKKIAANEIQRCAALGVKVNEVLKLEDLVRDDNLVFTATGITNGDLLKGISRKGNLASTETILIRGKSRTIRKIQSIHYLDDLYKILNI
>LS483486.1|SQJ01049.1|374389_374560_-|cell-division-protein-ZapB
MSLEILDQLEEKIKQAVETIQLLQLEVEELKEKNAESQRNIENLQTENEQLKKRTS
>LS483486.1|SQJ01048.1|373803_374244_-|FMN-binding-protein-MioC
MHICILSGSTLGGAEYVAEHLNDVLETQGFSTALFHGPNLSDIENEKIWLVVTSTHGAGELPDNLKPLFDELANSQKDFSDVRFAVVGLGSSDYDTFCYAADKVEQTLQAKSAVKICETLKIDVLNVDDQESYAEEWLPSFIEGLK
>LS483486.1|SQJ01047.1|373372_373807_-|D-tyr-tRNA(Tyr)-deacylase
MIALIQRVSQAKVDVNGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDKMNLNVQQAQGELLIVSQFTLAADTQKGLRPSFSKGASPALANELYEYFIQKCAEKLPVSTGQFAADMQVSLTNDGPVTFWLNV
>LS483486.1|SQJ01046.1|372591_373068_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MIRIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLFPDTDMQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQCDIEQVNVKATTTEKLGFTGRQEGIACEAVALLIRQ
>LS483486.1|SQJ01056.1|381404_384587_+|hemoglobin-binding-protein
MTNFRLNVLAYSVMLGLTASVAYADEPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQNSNASEQLEQINVSGSTENTDTKAPPKIAETVKTAKTLEREQANSIKDIVKYETGVTVVEAGRFGQSGFAIRGVDENRVAINIDGLRQAETLSSQGFKELFEGYGNFNNTRNGAEIETLKEVNITKGANSIKSGSGSLGGSVIYKTKDARDYLLNKDYYVSYKKGYATENNQSFNTLTLAGRYKKFDVLVVTTSRNGHELENYGYKNYNDKIQGKKREKADPYKIEQDSTLLKLSFNPTENHRFTLAADLYEHRSRGQDLSYTLKYQKTNSDLPEVDSRHTNDKTKRRNISFSYENFSQTPFWDTLKITFSKQKIKTRARTDEYCDAGVRYCEGTANPAGLKLTNGEITRRDGSPLKFTEINNTANTTSSKDKTYNFKEFIDIDNQVIQDKLALKRPSETWYDCSIFDCKNPEKLKIFEADRNFGTTGKWKQNIELKKIVSNGREFARVADKYNRKISSILPSSPGYLERLWQERDLDTNTQQLNLDLTKDFKTWRVEHNLQYGSSYNTTMKRMVNRAGNDATDVQWWATPTLGEDIFDKPYTCATTSEWNANLCPRVDPEFSYLLPIKTTGKSVYLFDNVVITDYLSFDLGYRYDNIHYQPKYKHGVTPKLPDDIVKGLFIPLPENPNDDKVKENVQQNIDYIAKQNKKYKAHSYSFASTIDPTSFLRLQLKYSKGFRAPTSDEMYFTFKHPDFTILPNTNLKPEIAKTKEIAFTLHNDDWGFISTSLFKTNYKNFIDLIFKEKRNFAVGDRGGSTLPFSLYQNINRDSAVVKGIEINSKVFLGKMAKFMDGFNLSYKYTYQKGRMDGNIPMNAIQPKTMVYGLGYDHPNHKFGFNFYTTHVASKNPEDTYNMFYKEENKKDSTIKWRSKSYTILDLIGYVQPIKNLTIRAGVYNLTNRKYITWDSARSIRSFGTSNVIDQSTGLGINRFYAPGRNYKMSVQFEF
>LS483486.1|SQJ01057.1|384847_385030_+|Uncharacterised-protein
MYEILFYRDQNDIEPVKEYLLSLAQNESKDSRIKLNKIRDYVIQTAQQRLSELKERLKNE
>LS483486.1|SQJ01058.1|385022_385319_+|putative-HTH-type-transcriptional-regulator
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKLLAPLGKTLSIVPLRVKNA
>LS483486.1|SQJ01059.1|385479_387396_+|sugar-ABC-transporter-ATP-binding-protein
MIIFSNLSLKRGQTELLENASATINPKQKVGLVGKNGCGKSSLFALLKKELMPEGGEVNYPANWRVSWVNQETPALDISAIDYVIQGDREYCRLQQELERANERNDGNAIARIHGQLEMLDAWTIQSRAASLLHGLGFSQEETIQPVKAFSGGWRMRLNLAQALLCPSDLLLLDEPTNHLDLDAVIWLERWLVQYQGTLVLISHDRDFLDPIVTKILHIENQKLNEYTGDYSSFEVQRATKLAQQTAMYRQQQQKISHLQKYIDRFKAKATKAKQAQSRMKALERMELIAPAYVDNPFTFEFRPPQSLPNPLVMIEQASAGYGSGESAVEILSKIKLNLVPGSRIGLLGKNGAGKSTLIKLLAGELTALSGTVQLAKGVQLGYFAQHQLDTLRADESALWHMQKLAPEQTEQQVRDYLGSFAFHGDKVNQAVKSFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALVDYEGSLVVVSHDRHLLRNTVEEFYLVHDKKVEEFKGDLEDYQKWLSEQNSTSENKVSEKVGDNENSVQNRKEQKRREAELRQQTAPLRKKITQLEEKMNKFSSELANIENQLADAELYNAENKEKLTALLAQQVDVKKALDDVETEWMTAQEELEEMLQA
>LS483486.1|SQJ01060.1|387405_387942_+|DNA-topoisomerase
MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTLDEICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKITCPECKTGHLIPRRGRQGKIFYGCDNFPKCKFSLPAKPYTLPCPTCHFPLSLLKGEDGEKQIFQCANKTCRHIFEQ
>LS483486.1|SQJ01061.1|387957_388509_+|ribosome-maturation-factor
MNREQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQLSRLQGKYERPTTWIVPAKSTTPHFLTGKFDSIAIRLCDHPSVKALCEITGFALTSTSANLTGEPPCRIADEVRSQFGSDFPVLDEIVGGALNPSEIRDLRTNQLFRQG
>LS483486.1|SQJ01062.1|388512_389319_+|dehydroshikimate-reductase,-NAD(P)-binding
MDLYAVWGNPIVQSKSPLIQSQLAAQTHQTIEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKLAEACNTLKKLDDGKLYADNTDGIGLVTDLQRLNWLHPNQRILILGAGGATKGVLLPLLQAQQNIVLANRTFSKAKELAERFQPYGNIQAASMDSIPLQTYDLVINATSAGLRGGTASVDAEILRLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVAVYEQLK
>LS483486.1|SQJ01063.1|389330_390083_+|3-deoxy-D-manno-octulosonic-acid-transferase
MENKYSDFMVYVDESGDHSLQSIDKNYPVFVLAFCIFYKDHYRNNIVPQIQKIKFDYFGHDMVILHEHEIRKEKGDFNIFTSREQREGFMERISSIIENTNFILAACVIDKRKTPQNETTHPYHFSLKHCLETLYEFVCEKHQEDKITFVAVESRGRNEDRELELEFLRICDGQNKFKKSLPFQVKIVPKQINSVGLQVADLVARPIGRHILDSNQPNRAFEILKKKFYCEGGRKILGENFDQKGLKHFP
>LS483486.1|SQJ01064.1|390197_390761_+|DNA-3-methyladenine-glycosylase
MQQITRCPWVGEQPIYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYRAAFHQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAKAYLAMEKCGENFSNFIWSFVNHKPIVNDVPDLRSVPTKTEVSKALSQALKKRGFVFVGETTCYAFMQSMGLVDDHLNDCPCKTR
>LS483486.1|SQJ01065.1|390757_391522_-|UDP-glucose-Lipooligosaccharide-beta-1-4-glucosyltransferase
MPTISVAMIVKNEAQDLANCLDTVKDWVDEIIILDSGSTDNTKEIALSYGAKFYENSDWQGFGKQRQLAQQYVTSDYVLWLDADERVTPKLQQAILSAVKNDRENTVYEIPRVSEVFGREIRHSGWYPDYVVRLYRTNYAQYNDSLVHEKVEFPAGTKVEKLTGDLEHFTYKSIHHYLVKSAGYAKAWADQRQAKGKKATLWQGISHALGCFVKMYLLKAGFLDGKQGFLLAVLSAHSTFVKYADLWERDQHKH

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Crispr_ID: LS483486_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483486_2

1170184-1170332

Orphan

Consensus_repeat	Method
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of LS483486_2

>merge|LS483486|2|1170184-1170332|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAATTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

>LS483486|2|2|1170184-1170332|CRISPRCasFinder
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	CGTGCTCTACCAACTGAGCTATTCCCGCAATAATGCTTTTATAATGTGAAA
TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCAACCTTGGCAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483486.1\|SQJ02171.1\|1170453_1171002_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
LS483486.1\|SQJ02170.1\|1168986_1170054_+\|UDP-GlcNAc:undecaprenylphosphate-GlcNAc-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|131433
LS483486.1\|SQJ02180.1\|1178228_1180166_+\|choline-transporter-of-high-affinity	unknown	unknown	gnl\|CDD\|224211
LS483486.1\|SQJ02169.1\|1166320_1168912_+\|uridylyltransferase	unknown	unknown	gnl\|CDD\|234980
LS483486.1\|SQJ02162.1\|1158439_1159633_+\|Mn2+-and-Fe2+-transporter-of-the-NRAMP-family	unknown	unknown	gnl\|CDD\|224826
LS483486.1\|SQJ02179.1\|1176506_1177862_+\|sensory-histidine-kinase-in-two-component-regulatory-system-with-QseB	unknown	unknown	gnl\|CDD\|182388
LS483486.1\|SQJ02174.1\|1172616_1174344_+\|PEP-protein-phosphotransferase-of-PTS-system-(enzyme-I)	unknown	unknown	gnl\|CDD\|183017
LS483486.1\|SQJ02161.1\|1157658_1158396_+\|lactam-utilization-protein	unknown	unknown	gnl\|CDD\|212111
LS483486.1\|SQJ02177.1\|1175414_1175780_+\|putative-outer-membrane-protein	unknown	unknown	gnl\|CDD\|129260
LS483486.1\|SQJ02168.1\|1165420_1166227_+\|methionine-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
LS483486.1\|SQJ02176.1\|1175087_1175300_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|224399
LS483486.1\|SQJ02164.1\|1161193_1162066_-\|phosphoribosylaminoimidazole-succinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
LS483486.1\|SQJ02178.1\|1175844_1176510_+\|DNA-binding-response-regulator-in-two-component-regulatory-system-with-QseC	unknown	unknown	gnl\|CDD\|182387
LS483486.1\|SQJ02175.1\|1174403_1174904_+\|glucose-specific-enzyme-IIA-component-of-PTS	unknown	unknown	gnl\|CDD\|181859
LS483486.1\|SQJ02173.1\|1172271_1172529_+\|phosphohistidinoprotein-hexose-phosphotransferase-component-of-PTS-system-(Hpr)	unknown	unknown	gnl\|CDD\|182777
LS483486.1\|SQJ02167.1\|1164940_1165285_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
LS483486.1\|SQJ02163.1\|1159703_1161038_-\|argininosuccinate-synthetase	unknown	unknown	gnl\|CDD\|235434
LS483486.1\|SQJ02172.1\|1171072_1172113_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|237039
LS483486.1\|SQJ02166.1\|1164585_1164984_-\|Uncharacterised-protein-family-(UPF0231)	unknown	unknown	gnl\|CDD\|225654
LS483486.1\|SQJ02165.1\|1162230_1164579_-\|penicillin-binding-protein-1b	unknown	unknown	gnl\|CDD\|273952

Protein	Function_ID	Function_description	E-value
LS483486.1\|SQJ02171.1\|1170453_1171002_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	3.63664e-134
LS483486.1\|SQJ02170.1\|1168986_1170054_+\|UDP-GlcNAc:undecaprenylphosphate-GlcNAc-1-phosphate-transferase	gnl\|CDD\|131433	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
LS483486.1\|SQJ02180.1\|1178228_1180166_+\|choline-transporter-of-high-affinity	gnl\|CDD\|224211	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane].	0
LS483486.1\|SQJ02169.1\|1166320_1168912_+\|uridylyltransferase	gnl\|CDD\|234980	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD.	0
LS483486.1\|SQJ02162.1\|1158439_1159633_+\|Mn2+-and-Fe2+-transporter-of-the-NRAMP-family	gnl\|CDD\|224826	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism].	2.41376e-86
LS483486.1\|SQJ02179.1\|1176506_1177862_+\|sensory-histidine-kinase-in-two-component-regulatory-system-with-QseB	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	3.24236e-178
LS483486.1\|SQJ02174.1\|1172616_1174344_+\|PEP-protein-phosphotransferase-of-PTS-system-(enzyme-I)	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
LS483486.1\|SQJ02161.1\|1157658_1158396_+\|lactam-utilization-protein	gnl\|CDD\|212111	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins. This subfamily of the LamB/YbgL family is represented by the Escherichia coli putative lactam utilization protein YbgL. Although their molecular function of member of this subfamily is unknown, they show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	5.85636e-152
LS483486.1\|SQJ02177.1\|1175414_1175780_+\|putative-outer-membrane-protein	gnl\|CDD\|129260	TIGR00156, Uncharacterized_protein_HI_1709, TIGR00156 family protein. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. [Hypothetical proteins, Conserved].	8.01756e-57
LS483486.1\|SQJ02168.1\|1165420_1166227_+\|methionine-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.6579e-160
LS483486.1\|SQJ02176.1\|1175087_1175300_+\|Uncharacterised-protein	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	9.985e-06
LS483486.1\|SQJ02164.1\|1161193_1162066_-\|phosphoribosylaminoimidazole-succinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
LS483486.1\|SQJ02178.1\|1175844_1176510_+\|DNA-binding-response-regulator-in-two-component-regulatory-system-with-QseC	gnl\|CDD\|182387	PRK10336, PRK10336, two-component system response regulator QseB.	3.28549e-101
LS483486.1\|SQJ02175.1\|1174403_1174904_+\|glucose-specific-enzyme-IIA-component-of-PTS	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	1.54255e-101
LS483486.1\|SQJ02173.1\|1172271_1172529_+\|phosphohistidinoprotein-hexose-phosphotransferase-component-of-PTS-system-(Hpr)	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	1.7508e-37
LS483486.1\|SQJ02167.1\|1164940_1165285_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	3.07846e-82
LS483486.1\|SQJ02163.1\|1159703_1161038_-\|argininosuccinate-synthetase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
LS483486.1\|SQJ02172.1\|1171072_1172113_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
LS483486.1\|SQJ02166.1\|1164585_1164984_-\|Uncharacterised-protein-family-(UPF0231)	gnl\|CDD\|225654	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown].	5.69935e-62
LS483486.1\|SQJ02165.1\|1162230_1164579_-\|penicillin-binding-protein-1b	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0

>LS483486.1|SQJ02170.1|1168986_1170054_+|UDP-GlcNAc:undecaprenylphosphate-GlcNAc-1-phosphate-transferase
MLSIFVTFLGAFLTLIVMRPLANWIGLVDKPNYRKRHQGTIPLIGGVSLFVGNLCYYLMEWDQLRLPYLYLFSIFVLLAIGILDDRFDISPFLRAGIQAILAILMIDLGNIYLDHLGQILGPFQLTLGSIGLIITVFATIAIINAFNMIDGIDGLLGGLSCVSFAAIGILMYRDGQMDMAHWSFALIVSILPYLMLNLGIPFGPKYKVFMGDAGSTLIGFTIIWILLLSTQGKGHPMNPVTALWIIAIPLIDMVAIIYRRVRKGKSPFRPDRLHVHHLMVRAGLTSRQAFLLITFVSAVCATIGILGEVYYVNEWAMFVGFFILFFLYVYSITHAWRITRWVRRMKRRAKRLKKA
>LS483486.1|SQJ02169.1|1166320_1168912_+|uridylyltransferase
MLFSPTLSSPLTPSAVKIERENLKQFELENFSRYSIFELIENRCDFYDALLIQLWQEIELSEQLGIALIAVGGYGRREMFPLSDLDFLILVEQTPSPEIEEKITQFIQFLWDCGFEVGNSVRTLEQCESEGKQDITIATNLLEARFLAGNRPHFDALNELVKRADFWSKEDFFNAKVQEQIERYQRYHNTAYNLEPDIKYSPGGLRDLHLLYWVALRHSGALTLEAILQSGFIYPQEYQQLQESRAFLFKVRFALHLILKRYDNRLLFDRQIKVSELLGFRGEGNPAVEKMMKCFFQALHRISLISNLLIQHYRENVLPSNQDTVIDQLDDDFQLINQCLCLRNSFVFQEKPARILDLFFYLTQYEHANIHSDTLRQLQISLDQLSQKLCEIPAAREKFLRLFNQPNAIKRAFMPMHQYGVLTAYLPQWQAIEGLMQFDLFHIYTVDEHTLRVMLKLESFLSQESAQEHPIAHRIFSQLSDRTLLYIAALFHDIAKGRGGDHAELGAVDIADFAQLHGLDRREIDTLAWLVKSHLLMSITAQRRDIHDPEVVMNFAEAVQNQVRLDYLTCLTVADICATNGNLWNSWKRSLFASLYEFTGRQFSQGMKELLDYSEKSAENRKLAQQILMRDYSDITQISIEQLWARCPEDYFVRNTPKQIAWHTSLLVDFVEALLVKISNRFSLGGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRELEQALTLALQSEKLPALSIVPNRQLQHFTVQTDVRFLQENKKEHTQMELVALDKAGLLAQVSQIFTELNLNLLNAKITTVGEKAEDFFILTNQFGQALDSQQREILRNVLYRNIG
>LS483486.1|SQJ02168.1|1165420_1166227_+|methionine-aminopeptidase
MAIPIRTEKEIVKLREACKLASDVLVMIEPYVKAGVTTGELDRICHEYMVNEQKVIPACLNYHGFPKATCISINEVVCHGIPSDDKVLKNGDIVNIDVTVIKDGYFGDNSKMYIVGGETNIRSKKLVEAAQEALYVGIRTVKPDIRLNEIGKAVQKYTESQTFSVVREYCGHGVGTEFHCEPQVLHYYADDGGVILKPGMVFTIEPMINAGKKEVRVMGDGWTVKTKDRSHSAQYEHQLVVTETGCEVMTIRDEEIAEGRISRIMVNV
>LS483486.1|SQJ02167.1|1164940_1165285_-|iron-sulfur-cluster-insertion-protein-ErpA
MIDDMAVPLTFTDAAANKVKSLISEEENTNLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI
>LS483486.1|SQJ02166.1|1164585_1164984_-|Uncharacterised-protein-family-(UPF0231)
MLPALVAVVHPLVSKMDFQFTHYQGNVSVKCSMEHIALANWFNTEVRSNSDKILTALSTAKSLIENQEKVLVGAEYTLFLNADEVMVRANNLAIESDEILEQDFHYYDEESLAFCGTQDFIHFLQSYVDFIA
>LS483486.1|SQJ02165.1|1162230_1164579_-|penicillin-binding-protein-1b
MTSQHSAKKSSKNTPKNNRTFKGFLLKFSFTALVLTIFYGGYLDWQIRSKMDGQIWHLPAEVYSLLESVKIADNLTFDEVIQILLDNEYRQTTMVAAPGDFKLEDDSIVVLRRAFPFPDKAEPQRILRLRFSNNKLSRIEDLVTVKTVDEFRLAPKLIAMLQSDNEDRLAIPLQNYPRLLIDTLILTEDRRFYEHNGINPVGILRALIANIRAGQTVQGGSTLTQQLVKNLFLSRERTITRKANEALMSLVLDWRYDKNRILETYLNEIYLGQNGDTQIHGFELASQFYFGRSIREISLDQIALLVGMVKGPSLYNPWRNPQNALERRNIVLKLMLEHKMIGDELYQLLSQRPLGVQKKGQISRKYPAFIQTLQADLRRELGEHKMSSLLGARIFSTMDLKQQTQAENAVVNTVSQLQLKTKNPHLESAMIITDYRTGEIRAVVGGLQTQYAGFNRALMAKRQIGSLVKPSIYLTALSNPEQFRLNTLINNQPITINVKGSPPWQPRNYDKKYSGSVMLMDALARSLNIPTVNIGMKVGLSKVIDTQKAMGWDNVEIPKVPAMLLGSYTISPYDVTKLYQTIANQGERISLTTVDSITDRQGNLIFQHDKSVKQVVPQEAAFQTLFAMQQTVERGTARSLQKDYADLHLAGKTGTTNEARDTWFVGIDGKNISTVWLGRDDNGETKLTGASGALQIYKDYLNRTNIEKLAITPPATVKWVGINQYGGWDCESYRTIPVWLNNGQNFCGEIASPSFTPTEAETTTPPQESLWDVLDNPNPPAQ
>LS483486.1|SQJ02164.1|1161193_1162066_-|phosphoribosylaminoimidazole-succinocarboxamide-synthase
MTQQSLTLSLKKIYSGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPIPRKGEILTQISNFWFNKLAHIMPNHFTGDSVYDVLPKEEADLIKDRAVVCKRLTPIKIESIVRGYLTGSGLKDYKQTGTICGLKLPENLVEASKLPEAIFTPSSKEEVGNHDINISYTECEKLIGSDLAAQVKEKAIALYTTAAEYALTKGIIICDTKFEFGLDENGTLTLMDEVLTPDSSRFWSVETYQAGTNPPSFDKQFVRDWLENSGWNKQAPAPKVPENIIQKTVDKYQEALDLLTK
>LS483486.1|SQJ02163.1|1159703_1161038_-|argininosuccinate-synthetase
MSNTILQNLPKGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYNAIPKKAMAYGAENARLIDCRSQLAHEGIAAIQCGAFHISTGGIPYFNTTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPNLKIYKPWLDVQFIEELGGRLEMSQFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEQLSTGMKIVKPIMGVAFWDEKVEIKPETVTVTFEDGVPVALNGKHFDNAVDLILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGIRLGRLLYQGRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEKVEDAPFDPVDRIGQLTMRNLDVSDTRGKLGIYAQTGLLSAIKDSVLPQLGKK
>LS483486.1|SQJ02162.1|1158439_1159633_+|Mn2+-and-Fe2+-transporter-of-the-NRAMP-family
MASITHRRNAVLGAAFLMATSAIGPGFLTQTATFTNTLLASFGFVILLSILLDIGAQLNIWRIVIVSGKRAQDISNAVFPKAGYFLAALIVMGGLAFNIGNVGGAGLGLNSIFGIAPEMGAVISGIIAILIFLRKEAGLLMDRFAQLMGFIMVALTFYVMFKTEPPVAEAAYHSFIPEKIDPIAIVTLVGGTVGGYITFAGAHRLLDAGIQGEKAMAEVSRSSVSAILIASTMRVVLFLAVLGVVSKGVSLNPKNPAETPFEYVAGNFGQVLFGVVIWAASVTSVIGAAYTSVSFLTTLCPTIERNRNRWIIAFIVISTVVLVTVGKPAAVLVFVGTLNGLILPIALALILLAAYRSDIVGTYKHPVFLAFSGWFVVIIMAILSGKTIISYISSFFS
>LS483486.1|SQJ02161.1|1157658_1158396_+|lactam-utilization-protein
MKKIDLNADIAEGFPFDESLLQLLSSANIACGLHAGGAKEMQSAVKFAKENKVRIGAHPSFPDRENFGRTAMALSSQELIAHLRYQLGALKAICDGEGAVISYVKPHGALYNQAAKDEKIARVIAQTVYQFDPNLKLMGLAGSLMLRIAEEEKLQTISEVFADRHYMPDGSLVPRSQPNAMVESDKEAIQQVLQMVTKGQVNAIDGSLVPVKAESICLHGDNQHSLQFAKRIVEELEKNHIKITA
>LS483486.1|SQJ02171.1|1170453_1171002_-|oligoribonuclease
MPFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKPEILEGFKKENTHLALDDIRESIKELAYYREHFMKLD
>LS483486.1|SQJ02172.1|1171072_1172113_+|ribosome-small-subunit-dependent-GTPase-A
MAKRKLTQNQTRRIQSNNAKTLHRHKKKDIEWSDEMLGESQEGVVVTRYSIHADVENEQGEIYRCNLRRTLSSLVVGDKVVWRKGNEQLQGVSGVIEAIHPRENEISRPDYYDGLKPIAANIDRIIIVSAVLPTLSLNIIDRYLVVCEIAGITPLIVLNKVDLLAQEQRQEIEDQLKIYQDIGYEILMISAKSGENMEKLTALLAQGTAIFVGQSGVGKSSLINHILPSVNAQVGDVSETSGLGQHTTTSSRLYHLPQGGNLIDSPGIREFGLWHLDAEQITKGYREFQYVLGTCKFRDCKHLSDPGCALREAVEQGKISPVRYDNYHRLIESLSETKSQRHFSLV
>LS483486.1|SQJ02173.1|1172271_1172529_+|phosphohistidinoprotein-hexose-phosphotransferase-component-of-PTS-system-(Hpr)
MYSKDVEIIAPNGLHTRPAAQFVKEAKAFSSEITVTSGGKSASAKSLFKLQTLVLTQGTILTISADGEDEQQAVDHLVALIPTLE
>LS483486.1|SQJ02174.1|1172616_1174344_+|PEP-protein-phosphotransferase-of-PTS-system-(enzyme-I)
MISGILASPGIAFGKALVLKEEKIVLDTQKITDDQIDAEVARFYEGRAAAVEQLNSIRERALISLGEEKAAIFEGHLMILEDEELEEEILDYLRSNKVNAGVAASKILDQQVTMLSEIDDEYLKERAGDIRDIANRLVKNILGMYIVDLGDIQEESILVAYDLTPSETAQLNLEKVLGVVTDIGGRTSHTSIMARSLELPAIVGTNKVTKLVNTGDYLILDAINNQVYINPTASQIDELKALEAKISEEKAELAKLKDLPAITLDGHKVDVVANIGTIRDCDGAERNGAEGIGLYRTEFLFMDREQLPTEEEQFIAYKQVVEAMNGRLTVLRTMDIGGDKELSYLDLPKEMNPFLGWRAIRIALDRREILNAQLRAVLRASAFGKLAVMFPMIISVEEIRELKAVIETLKAELREEGRLFDNNIQVGVMVETPSAAVNAKFLAKEVDFFSIGTNDLTQYTLAVDRGNEFISHLYNPMHPSVLGLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISVPRIKKLIRNVNFQDAKVLADTALQKPTAAEIDQLIEEFLLENSLN
>LS483486.1|SQJ02175.1|1174403_1174904_+|glucose-specific-enzyme-IIA-component-of-PTS
MGLFDKLFGSKENKSVEVEIYAPISGEIVNIEDVPDVVFSEKIVGDGVAVRPIGNKIVAPVDGVIGKIFETNHAFSMESKEGVELFVHFGIDTVELKGEGFTRIAQEGQSVKRGDTVIEFDLALLESKAKSVLTPIVISNMDEISCIVKKSGEVVAGESVVLALKK
>LS483486.1|SQJ02176.1|1175087_1175300_+|Uncharacterised-protein
MQNIQYECGETHHLKAQSASILLVMKGQLNLRSETTALSLKQGKVAFITAGAAYEVEGLIEGYAVVAKLP
>LS483486.1|SQJ02177.1|1175414_1175780_+|putative-outer-membrane-protein
MKKFALATIFALATTSAFAGFNGNNSQGGFQQAAPAAISVKQALSAADNSMITLVGNITQQIDDDEFWFTDGTGQIKIEIKKRVWNGLNVDSKDKVKIYGKLDNEVFEKAELDVLRIEKVE
>LS483486.1|SQJ02178.1|1175844_1176510_+|DNA-binding-response-regulator-in-two-component-regulatory-system-with-QseC
MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSSWDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYALGQVEK
>LS483486.1|SQJ02179.1|1176506_1177862_+|sensory-histidine-kinase-in-two-component-regulatory-system-with-QseB
MKNRSLTLRLISVLCLTALFVWLGSTLVAWWQVRHDVNKVFDAQQVLFAERLANSDLSTILLESSTTLNKNSQSVLKKSYDDDALAFAIFSKTGKLLFSDGRNGKDFIFNYKTGFYNANIYDDDDKWRIFWRMAANGELVIAVGQELDYREDLIEEMILGQMWIWFASLPILIIVLGWLIHKELRPIKRLSQEVQTRKSGDVSLLNTEGLPVEILPLVKNLNQFFDRTSAMLQRERRFTSDAAHELRSPLAALRIQTEVAQLAGDDVALREQALLHLTQGIDRASQLIEQLLTLSRLDNLQALETLQLLDWEAIVQSLISERYFVAEKRKITLVFEKESEPKQKQGQSILVSLMLRNLLDNAIKYCPEDTIVSVKISSSQIIIEDNGGGVEPEDLKKLGQRFYRPAGQNEKGSGLGLSIVMRIAELHGFKVRLENVVKEGRRIGLKAIISL
>LS483486.1|SQJ02180.1|1178228_1180166_+|choline-transporter-of-high-affinity
MIFIAPEQTQALLNQAKSGIFANFSWFYVLTFSVFLGFLLILSVSSLGNIKLGQDEEEPEFSFLSWLAMLFAAGMGVGLMFFGVAEPLTHYLSDITVGSAEHKQQEALLHTLFHWGIHAWAVYGTIALALAYFGFRYKLPLALRSCFYPLLKDRINGKIGDAIDVMALLATLFGIITTLGFGSSQLGAGLEQIGWISQNSFALQVGVIVVVMCLAVFSAISGIGKGVKILSEINLTLAFCLLLFVLISGPTLYLLSAFSDNIGNYFSNLVQLSFKTYAYEQEHTSWFSGWTVLYWAWWCSWAPFVGLFIARISKGRTIREFIFGVLVIPSLFGILWFTVFGNTAVWLNDGIAAGGLGEFISSPEILLFKFLNYLPLPTITGFVSLLVISLFFITSADSGIYVLNNIASRDKSLASPAWQAIMWGTLMSVVAIVLMQSGGLANLQTMTLIVALPFALLMLVMCFSLWKGLIADKKYFSTKVNPTSIFWSGDKWKSHLEQMMNQTQEKDILRFLKNTALPAMRELRQELTGKYNLSVEINTLFKQEEPALELVIHKESMRDFMYGIKSVGREVSEQLINDENLPHIQHSVTYEPYTYFFDGRVGYDVQYMDQDELIADMLKQYERYLSLLDDVGQELMAHEQTELAE

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Crispr_ID: LS483486_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483486_3

1199048-1199135

Orphan

Consensus_repeat	Method
ACCTTCCCCCGCAAGCAAGGGAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483486_3

>merge|LS483486|3|1199048-1199135|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGGCAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGATACCTTCCCCCGCAAGCAGGGGAAGG

>LS483486|3|3|1199048-1199135|CRISPRCasFinder
ACCTTCCCCCGCAAGCAAGGGAAGG	CAAGATTTTCTTTGAGCCTCTTTTTGTCACTTTGTGAT
ACCTTCCCCCGCAAGCAGGGGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
LS483486.1\|SQJ02245.1\|1206310_1206418_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|234990
LS483486.1\|SQJ02247.1\|1206368_1206977_+\|Uncharacterized-protein-conserved-in-bacteria-(DUF2057)	unknown	unknown	gnl\|CDD\|234990
LS483486.1\|SQJ02237.1\|1198330_1198966_-\|DNA-glycosylase-and-apyrimidinic-(AP)-lyase	unknown	unknown	gnl\|CDD\|182661
LS483486.1\|SQJ02239.1\|1199859_1200483_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|179350
LS483486.1\|SQJ02243.1\|1204188_1204767_-\|inner-membrane-subunit	unknown	unknown	gnl\|CDD\|235352
LS483486.1\|SQJ02235.1\|1195819_1196875_+\|molybdate-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182993
LS483486.1\|SQJ02244.1\|1205051_1206113_-\|inner-membrane-peptidase	unknown	unknown	gnl\|CDD\|236978
LS483486.1\|SQJ02233.1\|1194205_1194970_+\|molybdate-transporter-subunit	unknown	unknown	gnl\|CDD\|182641
LS483486.1\|SQJ02240.1\|1200482_1201559_-\|inner-membrane-oxidoreductase	unknown	unknown	gnl\|CDD\|234844
LS483486.1\|SQJ02238.1\|1199150_1199858_-\|inner-membrane-NADH-quinone-reductase	unknown	unknown	gnl\|CDD\|237091
LS483486.1\|SQJ02234.1\|1195143_1195833_+\|molybdate-transporter-subunit	unknown	unknown	gnl\|CDD\|181841
LS483486.1\|SQJ02228.1\|1192387_1193191_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	unknown	unknown	gnl\|CDD\|133038
LS483486.1\|SQJ02248.1\|1207044_1209201_+\|inner-membrane-protein	unknown	unknown	gnl\|CDD\|130727
LS483486.1\|SQJ02190.1\|1191501_1192386_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	unknown	unknown	gnl\|CDD\|366154
LS483486.1\|SQJ02242.1\|1203519_1204101_-\|electron-transport-complex-protein-RnfB	unknown	unknown	gnl\|CDD\|235347
LS483486.1\|SQJ02241.1\|1201563_1203519_-\|electron-transport-complex-protein-RnfC	unknown	unknown	gnl\|CDD\|235334
LS483486.1\|SQJ02232.1\|1193300_1194068_-\|DNA-binding-transcriptional-dual-regulator	unknown	unknown	gnl\|CDD\|182640
LS483486.1\|SQJ02188.1\|1189643_1190705_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	unknown	unknown	gnl\|CDD\|340847
LS483486.1\|SQJ02236.1\|1196898_1198272_-\|Na+-dependent-transporters-of-the-SNF-family	unknown	unknown	gnl\|CDD\|271367
LS483486.1\|SQJ02189.1\|1190716_1191490_+\|putative-UDP-glcNAc--lipooligosaccharide-N-acetylglucosaminyl-glycosyltransferase	unknown	unknown	gnl\|CDD\|225843

Protein	Function_ID	Function_description	E-value
LS483486.1\|SQJ02245.1\|1206310_1206418_+\|Uncharacterised-protein	gnl\|CDD\|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	8.00976e-11
LS483486.1\|SQJ02247.1\|1206368_1206977_+\|Uncharacterized-protein-conserved-in-bacteria-(DUF2057)	gnl\|CDD\|234990	PRK01904, PRK01904, DUF2057 domain-containing protein.	3.41208e-100
LS483486.1\|SQJ02237.1\|1198330_1198966_-\|DNA-glycosylase-and-apyrimidinic-(AP)-lyase	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	8.06206e-140
LS483486.1\|SQJ02239.1\|1199859_1200483_-\|oxidoreductase	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	1.08851e-127
LS483486.1\|SQJ02243.1\|1204188_1204767_-\|inner-membrane-subunit	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	5.78855e-111
LS483486.1\|SQJ02235.1\|1195819_1196875_+\|molybdate-transporter-ATP-binding-protein	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
LS483486.1\|SQJ02244.1\|1205051_1206113_-\|inner-membrane-peptidase	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
LS483486.1\|SQJ02233.1\|1194205_1194970_+\|molybdate-transporter-subunit	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	3.40456e-98
LS483486.1\|SQJ02240.1\|1200482_1201559_-\|inner-membrane-oxidoreductase	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
LS483486.1\|SQJ02238.1\|1199150_1199858_-\|inner-membrane-NADH-quinone-reductase	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	4.5237e-131
LS483486.1\|SQJ02234.1\|1195143_1195833_+\|molybdate-transporter-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	1.3737e-137
LS483486.1\|SQJ02228.1\|1192387_1193191_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	gnl\|CDD\|133038	cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	6.66963e-120
LS483486.1\|SQJ02248.1\|1207044_1209201_+\|inner-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
LS483486.1\|SQJ02190.1\|1191501_1192386_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	6.29483e-31
LS483486.1\|SQJ02242.1\|1203519_1204101_-\|electron-transport-complex-protein-RnfB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	1.12731e-113
LS483486.1\|SQJ02241.1\|1201563_1203519_-\|electron-transport-complex-protein-RnfC	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0
LS483486.1\|SQJ02232.1\|1193300_1194068_-\|DNA-binding-transcriptional-dual-regulator	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	2.3464e-84
LS483486.1\|SQJ02188.1\|1189643_1190705_+\|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	6.66878e-136
LS483486.1\|SQJ02236.1\|1196898_1198272_-\|Na+-dependent-transporters-of-the-SNF-family	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	1.81306e-163
LS483486.1\|SQJ02189.1\|1190716_1191490_+\|putative-UDP-glcNAc--lipooligosaccharide-N-acetylglucosaminyl-glycosyltransferase	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	6.22864e-55

>LS483486.1|SQJ02237.1|1198330_1198966_-|DNA-glycosylase-and-apyrimidinic-(AP)-lyase
MNKTKRIEILTRLREQNPHPTTELQYNSPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLGLDGLKSYIKTIGLFNSKAENIIKTCRDLIEKHNGEVPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFRVCNRTNFAAGKDVVKVEEKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVEF
>LS483486.1|SQJ02236.1|1196898_1198272_-|Na+-dependent-transporters-of-the-SNF-family
MTTNNKQRQTWSSRLTYVMTVAGATVGFGATWRFPYLVGENDGGAYVLLFCIAMIVIGIPMILVENVIGRRLRVNSIDAFGDKILDKGKGISKYWKILGYMGLLGAFGIMAYYMVLGGWVISYIISLISGTLDISTPITKDIAKNFYDLHIGNSPYEIIFYTLLFVIVNYIILAKGIIGGIERSVKYLMPLLFIFLIGMVIRNVTLPGAMEGITFYLKPDFSKITPQLFIFVLGQVFFALSLGFGVLITLSSYLNKEENLIHTAVITGFTNTIIAVLAGFMIFPSLFTFGIEPNAGPTLVFQSLPIVFSHLWAGKFFAIIFFGLLLIAALTTSITIYEVIITALQEKLRMRRGKAIVLTLSGIFLLGNIPAILGDNLWKNVTIFGKSIFDFYDYASGNILFMLTALGCAIFVGFVLKDEAKKELSSTKYSTFIKIWFNYVKFVVPLIILVIFISNLF
>LS483486.1|SQJ02235.1|1195819_1196875_+|molybdate-transporter-ATP-binding-protein
MLQINVKKQLGKLALQANIQVPDQGVTAIFGLSGSGKTSLINLVSGLIQPDEGFIRLNDRTLVDMESQESLPTHLRKIGYVFQDARLFPHYTVKGNLRYGMKHVSQDDFNYIVDLLGITHLLKRYPLTLSGGEKQRVAIGRALLTDPDILLMDEPLSALDVPRKRELMQYLERLSKEINIPILYVTHSLDELLRLADRVVLMENGIVQAYDSVEKIWNSPIFAPWKGENEQSSVLALPVHLHNPPYKMTALSLGEQALWIHQVPANVGERVLVCIYSSDVSIILQKPEQTSIRNILRGKITQIEIQDSRVDLAVLVEGNKIWASISKWAQNELRFAVGQDVYVQIKAVSVM
>LS483486.1|SQJ02234.1|1195143_1195833_+|molybdate-transporter-subunit
MEISAINLSLSVAVSSMLWSLPLAIFVAWLLARKNFYGKSLITGVIHLPLVLPPVVIGYLLLVAMGRNGFIGKYLYQWFGLSFGFSWKGAVLSSAVVAFPLVVRAIRLSLENIDIKLEQAAQTLGASAWRVFFTITLPLSLPGVLAGLVLGFARSLGEFGATITFVSNIAGETQTIPLAMYSFIQTPAAEEQTARLCLFAIILSLISLLLSEWLSKRMQKKLGQGNVAN
>LS483486.1|SQJ02233.1|1194205_1194970_+|molybdate-transporter-subunit
MKKLTKISTALLIAGLGFSFAASAKVTVFAAASMTDALQQVAKDYAKQNPKNEVVFSFASSSTLAKQVEEGAPADIFVSASNKWMKYLSEKDLTVKETEKVLVGNDLVLIAPAKSAVNSVDIAKGEWINALKDSYLSVGDPAHVPAGQYAAEALTKLNLWDKVQDRLARAKDVRGALALVERAEAPYGIVYSTDAKVSQQVKTVAVFPADSHKPVVYPVSIVKGHDNADSRDFLKYLESDAAKKVLVGYGFSAK
>LS483486.1|SQJ02232.1|1193300_1194068_-|DNA-binding-transcriptional-dual-regulator
MKNTEILLTIKLQQALFIDPKRVRLLKEIQQCGSINQAAKNAKVSYKSAWDHLEAMNKISPRPLLERNTGGKNGGGTVLTTYAERLLQLYDLLERTQEHAFHILQDESVPLDSLLTATARFSLQSSARNQFFGRVAQQRIIDSRCVVDVNVQGLPTPLQVSITTKSSARLKLITEKEVMLMFKAPWVKISEQPLVNQPNQFSVNIKSLNEEEAILQFAESNIEFCATVHQPNQWQIGQQVWIHIDQEQIILATLG
>LS483486.1|SQJ02228.1|1192387_1193191_+|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase
MKFSVLMSLYIKENPQFLRECFESLVAQTRQADEIVLVFDGAVTPELESVVTEFETKLPLKLVKLPQNRGLGKALNEGLLHCTYDWVFRMDTDDICVPDRFEKQVAFIEQHPESIIFGGQIAEFGKNVNDIVAYRNVPTSAQEIIKFTQKRCPFNHMTVAYQKSAVINCGGYEDLQEDYYLWIKLVAQGLYMANLPDILVYARVGNGMVSRRRGVNQAKAEWRLFKLKYRLGIQGLLSGLFTFALRFGSRLLPTSLLKKLYQTFLRK
>LS483486.1|SQJ02190.1|1191501_1192386_+|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase
MLSIIVPSYNRKAEVPALLERLTQQTSSNFEVIIVDDYSKERVVVEQRYSFPVTVIRNETNQGAAESRNIGARASKGDWLLFLDDDDRFMPEKSEKILQVIEQNPDINFIYHPAKCEMVNEGFSYVTQPIEPQEISTERILLANKIGGMPMVAIKKEMFLKIGGLSTALRSLEDYDFLLKLLQEPSFTPYKINEPLTYCTFHTKRSSVSTDTTNTQKAIDYIREHYVKTVEQARNFDINASYILAYPHIMNLSRKAAKYYFDIFKKTKSIKQFIITLVILISPKLAINLKRLGK
>LS483486.1|SQJ02189.1|1190716_1191490_+|putative-UDP-glcNAc--lipooligosaccharide-N-acetylglucosaminyl-glycosyltransferase
MLKKYLISLDKDIQRRKLFFSQKNTEDFQIFSAINTMQKDWDELASIFNIEQFKAHYFRNVTKGEIGCTLSHLSVYQKIIEDNDIAEDSYALVCEDDALFHSDFQQNLTALLSEKLEAEIILLGQSKINSFNDTDLEINYPTTFSFLCKKTGNVNYAFPYKSYFAGTVGYLIKKSAARRFIQQISQNKPFWLADDFLLFEQDFNIRNKVVRPLMVIENPVLISNLESVRGSLSNNLLKKLMKYPLKKIFAIKKNLAN
>LS483486.1|SQJ02188.1|1189643_1190705_+|putative-UDP-galactose--lipooligosaccharide-galactosyltransferase
MKKIGFFIMNIESAGGTERVSINVANALAKQGYDVSFISIGGNKPFFQVDEKINIYAMNKLPYSLKKDYFSITKKLRELVKELQLDTLIVVDGAIMLFSALALVNLNIKHILWEHYSFNFTGNRLVRTLGKYLAVTTCDKIVTLTEAEKTLWQEKFKTNNIITIANPNTLLPKNKLAKWENKTILSVGHLFSYKGFDYLLKVWQVLAKKYPDWNLKIVGSGEEEENLKNLAKALDIEDSVNFTPRTNDVSFYYESSSIYCLPSQTEGLPLVVIEAMAFGLPIVAFNCSPGVKQLVEHKENGFLCEKNNIEEMVKGLDLLINNPELYQQMSDKSRLMSEDYGIEKIIEEWKGIL
>LS483486.1|SQJ02238.1|1199150_1199858_-|inner-membrane-NADH-quinone-reductase
MTDLTEKNTALEEEKIESAVENQQKSIWKEIFAQGIWKNNPAVVQLLGLCPLLAVSSTATNALGLSLATMLVLTCTNTVISLFRQYIPKEIRIPIYVMIIATTVTAVQLLMNAYTYTLYQSLGIFIPLIVTNCIIIGRAEAFASKNSLLHSIWDGFSMGLGMALSLTILGALREIIGQGTIFEGIENLFGEQAKFLTHHIYHTDSSFLLFILPPGAFIGLGLLLAIKNRIDNVKK
>LS483486.1|SQJ02239.1|1199859_1200483_-|oxidoreductase
MGTVKITSRYGILLGFIALLCTIISAGIYFLTKDKIDAVIAAQQRELLLQVIPQDYFNNNLLESAVIPQDKNFVGIQKIYFAKKDGNISAYAYETTAPDGYSGDIRLLVGLDPKGEVLGVRVIEHHETPGLGDKIERRISNWILGFTNQSINEHNLSEWAVKKDGGKFDQFSGATITPRAVVNQTKRSALIMLNNQALLQQLSTQVK
>LS483486.1|SQJ02240.1|1200482_1201559_-|inner-membrane-oxidoreductase
MFKMVSSPHTHSGKLTARIMLWVILAMMPAFFTQIYYFGFGVLLQSALAIGTAIIAEFIAIKLRGKKPLNYLSDFSVALTALILAMAIPPYAPYWVIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSLIFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHNQLSDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLILKRIIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYHGNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
>LS483486.1|SQJ02241.1|1201563_1203519_-|electron-transport-complex-protein-RnfC
MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQSDGLDQWIERNPIDDFSTLSPEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISVRVIPTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAVINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAASQVENQEQQTQPTDAKKAVVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAKTQTTLENNQE
>LS483486.1|SQJ02242.1|1203519_1204101_-|electron-transport-complex-protein-RnfB
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGE
>LS483486.1|SQJ02243.1|1204188_1204767_-|inner-membrane-subunit
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSAIALITAGLMSLAFMGFTGLVK
>LS483486.1|SQJ02244.1|1205051_1206113_-|inner-membrane-peptidase
MLNDILTGYGIFILEILTILLLILAIVGLIISYRQHNKSKVGELEIKDLSEEFNEQVRLLRDFNLSEEEQKQRTKAEKKAEKQNAKKRKEKLKKGDTLEDEKKACVYVLDFCGDISASETTALREEISAILNVAKPEDEVLLRLESPGGIVHNYGFAASQLSRLKQKGIKLTVAVDKVAASGGYMMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVDVMTAGEFKRTVTVLGENTEKGKQKFQQELEETHKLFKQFVSQNRPCLDIDKIATGEHWFGQQAIALQLVDEISTSDDLILEKMKEKQVLNVKYRLKKSLIKKFGRQAEESAINIIHRYSTKQSRDFMY
>LS483486.1|SQJ02245.1|1206310_1206418_+|Uncharacterised-protein
MKLRAVVLGLATLCASTATFAGMVSTSSNLEFFSD
>LS483486.1|SQJ02247.1|1206368_1206977_+|Uncharacterized-protein-conserved-in-bacteria-(DUF2057)
MLEWFPLHLTLSFLAIDGQKASKSLGKAKTFTVDDTQSHQVVVRLNEIVGSGSNQSLFESNPVIVTFQGNAEDLVISAPAIRNLDSGDKFNQMPNITVKTKSGNAISAKVDVLKQEGLFPSGNVLNDLAEYNASGAAASVSKFTATTSANSMVAAPAGNAKANKGKVVVQGENVAEQQLQYWFQQADKETQTRFLNWAKSHK
>LS483486.1|SQJ02248.1|1207044_1209201_+|inner-membrane-protein
MNIRLNAKVISTIPVFIAVNIAAVGIWFFDISSQSMPLILGIIAGGLVDLDNRLTGRLKNVFFTLIAFSISSFIVQLHIGKPIQYIVLMTVLTFIFTMIGAVGQRYSTIAFGSLVVALYTTLTYIPEVNVWFINPVMILCGTLLYSVVTLIVYLFFPNRPVQESVAKAFCALGEYLDTKSCFFDPDEVAEIEKKHLNFAMKNANVVTAFNIVRTALFYRIRGQHRHPRTQRMLRYYFAAQDIHERTNSTHFDYQQITEKLKNTDLIFRIQRLLELQAQSCKEITASLRENKPYHFNKRVERALLGTLHSFELYKAQHLNDQDELIDIQTLLDNLQSINWQLRQLAQETTVTEQLAQIHTEQITGLRNISAVIFSHFTFESPLFRHAVRLSIVVFLCCAIVEFFQFNLGYWILLTTVFVCQPNYSATKVRLRQRIIGTILGVVVGSLLPYLNPTLELKLGLVVLTSTLFFFFRSNNYSFSTFFITLQVLLSFDVMGFDTAAALMPRLLDTLLGAAISWFAVSYLWPDWKYLQLDKVSHQALRSDAVYLLHIISQLQFGKSDDLKYRIARCNAHQYAAALSTTLSNMNNEPVKYKAYLQKGFDLLKLNYSLLSYISALGAYRDRMKNLQQTAQFLSGFYPVAKKIIYTLEHIEEIPEAIFNQQQESIETHLKELEKQEMTAEERAVFSLPYQQLNLITQLLPQFYGYFKKEINCQRAGAL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483486_1	1.1\|381173\|39\|LS483486\|CRISPRCasFinder	381173-381211	39	LS483486.1	437771-437809	1	0.974
LS483486_4	4.1\|1268065\|49\|LS483486\|CRISPRCasFinder	1268065-1268113	49	LS483486.1	1268029-1268077	1	0.98

1. spacer 1.1|381173|39|LS483486|CRISPRCasFinder matches to position: 437771-437809, mismatch: 1, identity: 0.974

gcccaccaaaatatcttacgattgtttgttggtgggcta	CRISPR spacer
gcccaccaaaatatctcacgattgtttgttggtgggcta	Protospacer
****************.**********************

2. spacer 4.1|1268065|49|LS483486|CRISPRCasFinder matches to position: 1268029-1268077, mismatch: 1, identity: 0.98

tgtgcagtagtagcaggagctgctgcctgtggtgcttgtgcagtagtag	CRISPR spacer
tgtgcagtagtatcaggagctgctgcctgtggtgcttgtgcagtagtag	Protospacer
************ ************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

647255 : 701117

Mannheimia_phage(10.64%)

integrase,holin,tail,terminase,plate

attL 642051:642067|attR 678842:678858

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
642051:642067	attL	NA	NA	NA	NA
SQJ01428.1\|647255_648281_-\|integrase	prophage integrase	K7PKD7	Enterobacteria_phage	9.6e-57	35.4
SQJ01429.1\|648619_648907_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01430.1\|648910_649393_-	Protein of uncharacterised function (DUF551)	A0A0M3LS47	Mannheimia_phage	9.5e-31	45.5
SQJ01431.1\|649441_649984_-	modification methylase Bsp6I-like	A0A0M3LP83	Mannheimia_phage	1.2e-45	53.6
SQJ01432.1\|650137_650605_-	modification methylase Bsp6I-like	Q6V7R9	Burkholderia_virus	1.1e-55	66.0
SQJ01433.1\|650612_650972_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01434.1\|650968_651205_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01435.1\|651201_651771_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01436.1\|651873_652308_-	ssDNA-binding protein	S5M9Z7	Pseudoalteromonas_phage	2.2e-18	40.0
SQJ01437.1\|652317_652971_-	ERF superfamily	A0A077KCB6	Edwardsiella_phage	7.5e-31	42.9
SQJ01438.1\|652981_653482_-	Siphovirus Gp157	A0A2H4IZG3	uncultured_Caudovirales_phage	1.9e-13	33.3
SQJ01439.1\|653491_653635_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01440.1\|653637_653799_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01441.1\|653767_653992_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01442.1\|653991_654333_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01443.1\|654346_655084_-	modification methylase DpnIIB-like	A0A0E3U2R2	Fusobacterium_phage	5.2e-113	77.5
SQJ01444.1\|655174_656206_-	phage antirepressor protein	D0UIK6	Aggregatibacter_phage	5.2e-42	82.8
SQJ01445.1\|656195_656447_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01446.1\|656578_656737_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01447.1\|657063_657285_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01448.1\|657299_657470_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQJ01449.1\|657671_659516_-	putative prophage Lp2 protein 4	NA	NA	NA	NA
SQJ01450.1\|659519_660173_-	phage repressor	A0A1I9KG86	Aeromonas_phage	1.2e-31	39.0
SQJ01451.1\|660274_660457_+	DNA-binding transcriptional regulator DicC	NA	NA	NA	NA
SQJ01452.1\|660517_660952_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01453.1\|661000_661675_+	Probable phage repressor protein	D0UIL6	Aggregatibacter_phage	1.1e-80	68.4
SQJ01454.1\|661671_662394_+	Uncharacterised protein	D0UIL5	Aggregatibacter_phage	5.9e-61	68.8
SQJ01455.1\|662390_663017_+	Replication protein P	A0A0M3LS65	Mannheimia_phage	3.4e-28	37.5
SQJ01456.1\|663013_663604_+	DNA methylase	A0A0M3LNW2	Mannheimia_phage	2.0e-51	56.6
SQJ01457.1\|663608_664118_+	Protein of uncharacterised function (DUF1367)	A0A0M3LR84	Mannheimia_phage	1.1e-69	76.2
SQJ01458.1\|664118_664547_-	Uncharacterised protein family (UPF0150)	NA	NA	NA	NA
SQJ01459.1\|664829_664919_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01460.1\|664918_665506_+	ning recombination protein	A0A2I7RAC0	Vibrio_phage	3.7e-37	48.5
SQJ01461.1\|665507_665873_+	RNA polymerase sigma factor	NA	NA	NA	NA
SQJ01462.1\|665912_666431_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01463.1\|666550_667441_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01464.1\|667849_668362_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01465.1\|668540_668900_+\|holin	Putative bacteriophage holin protein	NA	NA	NA	NA
SQJ01466.1\|668865_669468_+	Putative phage lysozyme	Q7Y5V0	Haemophilus_phage	3.9e-58	55.4
SQJ01467.1\|669460_669784_+	putative bacteriophage protein	Q7Y5U9	Haemophilus_phage	8.0e-18	48.6
SQJ01468.1\|669978_670326_-	transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.5e-22	56.1
SQJ01469.1\|670309_670561_-	bacteriophage protein/plasmid stabilization system protein	A0A1S5NR91	Burkholderia_phage	9.9e-16	52.9
SQJ01470.1\|670638_671157_+\|terminase	Probable bacteriophage terminase, small subunit	A0A1X9SFE5	Acinetobacter_phage	3.6e-20	39.2
SQJ01471.1\|671101_671389_+\|terminase	phage terminase large subunit	A0A2H4J196	uncultured_Caudovirales_phage	1.3e-14	51.9
SQJ01472.1\|671474_672137_+\|terminase	phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	6.8e-64	55.0
SQJ01473.1\|672105_672498_+\|terminase	phage terminase large subunit	A0A0M4RQB1	Streptomyces_phage	1.1e-37	69.6
SQJ01474.1\|672499_673816_+	phage-associated protein, HI1409 family	A0A2K9V3H1	Faecalibacterium_phage	3.0e-47	32.0
SQJ01475.1\|673754_675014_+	phage Mu protein gp30-like protein	E5AGA5	Erwinia_phage	3.1e-25	31.5
SQJ01476.1\|675139_676213_+	Uncharacterized protein conserved in bacteria	E5AGA6	Erwinia_phage	4.2e-55	39.3
SQJ01477.1\|676226_676646_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01478.1\|676707_677655_+	Uncharacterized protein conserved in bacteria	A0A0N9SG07	Pseudomonas_phage	2.8e-50	36.6
SQJ01479.1\|677657_677846_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01480.1\|677849_678200_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01481.1\|678192_678651_+	Mu-like prophage protein gpG	A0A2I7R754	Vibrio_phage	1.8e-15	34.5
SQJ01482.1\|678650_679010_+	Uncharacterised protein	NA	NA	NA	NA
678842:678858	attR	NA	NA	NA	NA
SQJ01483.1\|679011_679521_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01484.1\|679507_680581_+	phage-like protein	A0A0N9SJA3	Pseudomonas_phage	4.8e-59	41.3
SQJ01485.1\|680626_681052_+	Uncharacterised protein	A0A0A1IUI2	Pseudomonas_phage	2.6e-16	36.9
SQJ01486.1\|681051_681534_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01487.1\|681569_681722_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01488.1\|681718_684049_+\|tail	phage-like minor tail protein	K7RVL7	Vibrio_phage	6.2e-35	29.3
SQJ01489.1\|684139_684721_+	Uncharacterised protein	I3PGV3	Xanthomonas_phage	5.7e-06	27.7
SQJ01490.1\|684717_685032_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01491.1\|685028_685985_+	Uncharacterised protein	M4SNA5	Psychrobacter_phage	9.4e-22	29.9
SQJ01492.1\|685987_686659_+\|plate	phage baseplate assembly protein V	A0A0M5M1K7	Salmonella_phage	2.5e-21	34.6
SQJ01493.1\|686655_687021_+	Uncharacterised protein	A0A1J0MEY0	Pectobacterium_phage	8.2e-11	34.5
SQJ01494.1\|687013_688450_+	Uncharacterized homolog of phage Mu protein gp47	A0A0N9SH53	Pseudomonas_phage	1.1e-45	28.4
SQJ01495.1\|688458_689085_+	Protein of uncharacterised function (DUF2612)	A0A0N9SSD8	Pseudomonas_phage	1.0e-21	37.4
SQJ01496.1\|689081_691340_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	1.1e-172	56.2
SQJ01497.1\|691342_691969_+	HP1	Q94MX9	Haemophilus_virus	2.7e-30	45.2
SQJ01498.1\|691961_692450_+	Uncharacterised protein	F6MIM0	Haemophilus_phage	1.9e-47	56.2
SQJ01499.1\|692625_692745_+	mu com-like protein	NA	NA	NA	NA
SQJ01500.1\|692806_693652_+	D12 class N6 adenine-specific DNA methyltransferase	F6MIM2	Haemophilus_phage	3.1e-117	71.4
SQJ01501.1\|693690_693954_-	Uncharacterised protein	F6MIM3	Haemophilus_phage	7.2e-33	79.1
SQJ01502.1\|694632_695358_+	putative methyltransferase	NA	NA	NA	NA
SQJ01503.1\|695410_695863_+	DNA-binding transcriptional repressor	NA	NA	NA	NA
SQJ01504.1\|695929_697144_+	cysteine desulfurase	H7BUW1	unidentified_phage	1.5e-32	35.5
SQJ01505.1\|697203_697584_+	iron-sulfur cofactor synthesis protein NifU	A0A218MKD1	uncultured_virus	1.4e-53	80.6
SQJ01506.1\|697641_697965_+	FeS cluster assembly protein	A0A2H4N7N5	Lake_Baikal_phage	4.4e-24	46.7
SQJ01507.1\|697977_698502_+	DnaJ-like molecular chaperone specific for IscU	NA	NA	NA	NA
SQJ01508.1\|698552_699239_+	Protein of uncharacterised function DUF2625	NA	NA	NA	NA
SQJ01509.1\|699257_701117_+	DnaK-like molecular chaperone	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.3e-109	42.3

DBSCAN-SWA_2

749795 : 756450

Bacillus_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ01564.1\|749795_750368_+	component of RuvABC resolvasome, endonuclease	G3MA90	Bacillus_virus	1.9e-09	27.8
SQJ01565.1\|750430_751045_+	component of RuvABC resolvasome, regulatory subunit	NA	NA	NA	NA
SQJ01566.1\|751052_752060_+	ATP-dependent DNA helicase, component of RuvABC resolvasome	B3GAM6	uncultured_virus	6.9e-07	29.9
SQJ01567.1\|752111_752399_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01568.1\|752571_753465_-	site-specific tyrosine recombinase	A0A0K2CP59	Brevibacillus_phage	3.2e-32	30.1
SQJ01569.1\|753495_754662_-	3-phenylpropionic transporter	NA	NA	NA	NA
SQJ01570.1\|754661_755477_-	pyrroline-5-carboxylate reductase, NAD(P)-binding	A0A1X9I6T5	Streptococcus_phage	1.4e-18	28.8
SQJ01571.1\|755542_755842_+	DNA recombination related-protein RdgC	W6AT81	Vibrio_phage	9.4e-13	37.6
SQJ01572.1\|755871_756450_+	DNA recombination related-protein RdgC	S4TWL4	Salmonella_phage	8.4e-42	49.2

DBSCAN-SWA_3

768114 : 772436

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ01586.1\|768114_768321_+	mercuric ion scavenger protein	A0A218MNH0	uncultured_virus	9.6e-09	49.3
SQJ01587.1\|768394_768601_+	mercuric ion scavenger protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
SQJ01588.1\|768674_768881_+	mercuric ion scavenger protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
SQJ01589.1\|768954_769161_+	mercuric ion scavenger protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
SQJ01590.1\|769234_769441_+	mercuric ion scavenger protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
SQJ01591.1\|769514_769721_+	mercuric ion scavenger protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
SQJ01592.1\|769806_770013_+	mercuric ion scavenger protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
SQJ01593.1\|770086_770293_+	mercuric ion scavenger protein	A0A218MNH0	uncultured_virus	1.1e-09	50.7
SQJ01594.1\|770267_772436_+	copper transporter	A0A218MNH6	uncultured_virus	3.6e-194	51.7

DBSCAN-SWA_4

931022 : 1009035

Haemophilus_virus(71.43%)

integrase,protease,tail,capsid,holin,tRNA,terminase,portal

attL 924750:924767|attR 966482:966499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
924750:924767	attL	NA	NA	NA	NA
SQJ01824.1\|931022_931910_+\|protease	modulator for HflB protease specific for phage lambda cII repressor	NA	NA	NA	NA
SQJ01827.1\|931951_932242_-	putative protein-S-isoprenylcysteine methyltransferase	NA	NA	NA	NA
SQJ01830.1\|932547_933687_-	N-acetylneuraminic acid mutarotase	NA	NA	NA	NA
SQJ01833.1\|933850_935701_-	putative sialic acid transporter, TRAP-type C4-dicarboxylate transport system, large permease component	NA	NA	NA	NA
SQJ01834.1\|935765_936755_-	transporter	NA	NA	NA	NA
SQJ01835.1\|937104_937791_+	N-acetylmannosamine-6-P epimerase	NA	NA	NA	NA
SQJ01836.1\|937835_938738_+	N-acetylmannosamine kinase	NA	NA	NA	NA
SQJ01837.1\|938730_939597_+	putative HTH-type transcriptional regulator	NA	NA	NA	NA
SQJ01838.1\|939607_940489_+	N-acetylneuraminate lyase	NA	NA	NA	NA
SQJ01839.1\|940636_941449_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
SQJ01840.1\|941585_942731_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
SQJ01841.1\|942926_944003_-	outer membrane protein P2	NA	NA	NA	NA
SQJ01842.1\|944265_944730_-	ribonuclease HI, degrades RNA of DNA-RNA hybrids	J9Q745	Salmonella_phage	5.0e-45	52.9
SQJ01843.1\|944790_945558_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.1e-36	35.3
SQJ01844.1\|946239_947754_+	GTP-binding protein	NA	NA	NA	NA
SQJ01845.1\|947814_949023_-	arabinose transporter	NA	NA	NA	NA
SQJ01846.1\|949022_950198_-	putative assembly protein	NA	NA	NA	NA
SQJ01847.1\|950201_950789_-	2'-deoxycytidine 5'-triphosphate deaminase	I4AZP2	Saccharomonospora_phage	2.8e-24	40.5
SQJ01848.1\|950797_951439_-	uridine/cytidine kinase	A0A1V0SAA3	Catovirus	1.1e-34	38.1
SQJ01849.1\|951661_952978_-	permease	A0A0R6PHV4	Moraxella_phage	3.1e-185	80.7
SQJ01850.1\|953211_953742_+	inorganic pyrophosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	3.7e-20	36.9
SQJ01851.1\|954197_955211_-\|integrase	integrase	Q94N03	Haemophilus_virus	8.5e-191	98.2
SQJ01852.1\|955210_955804_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01853.1\|955803_956010_-	ribonuclease P	NA	NA	NA	NA
SQJ01854.1\|956010_956244_-	Uncharacterised protein	A0A0A7NPW2	Enterobacteria_phage	1.9e-16	56.6
SQJ01855.1\|956254_956548_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01856.1\|956548_957124_-	probable cI repressor	Q94N02	Haemophilus_virus	8.2e-106	97.4
SQJ01857.1\|957241_957454_+	putative cox protein	P79674	Haemophilus_phage	1.9e-28	95.7
SQJ01858.1\|957515_957908_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01859.1\|957965_958214_-	Uncharacterised protein	NA	NA	NA	NA
SQJ01860.1\|958303_958672_+	Uncharacterised protein	P79676	Haemophilus_phage	3.7e-67	100.0
SQJ01863.1\|958671_958857_+	Uncharacterised protein	Q775F8	Haemophilus_virus	5.2e-30	98.4
SQJ01866.1\|958868_959150_+	Uncharacterised protein	Q775F7	Haemophilus_virus	6.1e-46	100.0
SQJ01870.1\|959227_961558_+	probable rep protein	Q94N00	Haemophilus_virus	0.0e+00	97.0
SQJ01873.1\|961640_961877_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01876.1\|961879_962386_+	Uncharacterised protein	A0A0M3LTD8	Mannheimia_phage	1.8e-27	47.3
SQJ01879.1\|962354_962915_+	putative dam methylase	Q94MZ8	Haemophilus_virus	4.7e-98	98.3
SQJ01882.1\|963216_963618_+	Antitoxin HicB	Q775F5	Haemophilus_virus	2.3e-70	100.0
SQJ01885.1\|963985_965023_-\|capsid,portal	probable capsid portal protein	Q94MZ7	Haemophilus_virus	2.3e-199	99.7
SQJ01887.1\|965012_966836_-\|terminase	probable terminase, ATPase subunit	Q94MZ6	Haemophilus_virus	0.0e+00	96.7
966482:966499	attR	NA	NA	NA	NA
SQJ01913.1\|967053_967947_+\|capsid	probable capsid scaffold protein	Q94MZ5	Haemophilus_virus	1.5e-143	93.3
SQJ01916.1\|967950_968961_+\|capsid	phage major capsid protein	Q94MZ4	Haemophilus_virus	6.1e-181	95.5
SQJ01919.1\|968974_969820_+\|terminase	probable terminase, endonuclease subunit	Q94MZ3	Haemophilus_virus	8.5e-152	97.5
SQJ01963.1\|969812_970265_+	phage protein	Q94MZ2	Haemophilus_virus	9.1e-76	96.7
SQJ01964.1\|970252_970735_+	phage protein	Q94MZ1	Haemophilus_virus	1.3e-56	64.8
SQJ01965.1\|970743_971457_+	phage protein	Q1I0Z5	Pasteurella_virus	3.2e-19	33.2
SQJ01966.1\|971543_971702_+	Uncharacterised protein	NA	NA	NA	NA
SQJ01967.1\|971736_972867_+\|tail	tail sheath phage protein	Q94MY9	Haemophilus_virus	3.0e-213	97.1
SQJ01968.1\|972870_973323_+	phage protein	Q94MY8	Haemophilus_virus	6.9e-76	100.0
SQJ01969.1\|973409_973646_+\|holin	putative holin	Q94MY7	Haemophilus_virus	4.8e-36	100.0
SQJ01970.1\|973638_974199_+	lysozyme precursor phage protein	Q94MY6	Haemophilus_virus	1.3e-95	96.6
SQJ01971.1\|974198_974531_+	Uncharacterised protein	Q94MY5	Haemophilus_virus	1.8e-52	99.1
SQJ01975.1\|974723_975032_+	phage protein	Q775G2	Haemophilus_virus	1.2e-47	100.0
SQJ01976.1\|975220_977290_+\|tail	Phage-related minor tail protein	Q94MY4	Haemophilus_virus	1.2e-279	73.8
SQJ01977.1\|977293_977629_+	phage protein	Q94MY3	Haemophilus_virus	2.3e-52	99.1
SQJ01978.1\|977621_978791_+	phage protein	Q94MY2	Haemophilus_virus	4.4e-215	97.6
SQJ01979.1\|978800_979325_+\|tail	Phage tail protein (Tail_P2_I)	Q94MY1	Haemophilus_virus	4.8e-97	100.0
SQJ02018.1\|979354_981808_+\|tail	probable tail fiber protein	Q94MY0	Haemophilus_virus	0.0e+00	84.2
SQJ02019.1\|981814_982138_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	7.5e-08	41.4
SQJ02020.1\|982149_982752_+	Uncharacterised protein	Q94MX9	Haemophilus_virus	1.2e-96	93.0
SQJ02021.1\|982793_983561_+	Uncharacterised protein	Q94MX8	Haemophilus_virus	8.9e-132	96.9
SQJ02022.1\|983547_984174_+	phage protein	Q94MX7	Haemophilus_virus	2.0e-73	100.0
SQJ02023.1\|984160_985762_+	phage protein	Q94MX6	Haemophilus_virus	1.6e-276	90.1
SQJ02024.1\|986758_987271_-	phosphatidylglycerophosphate synthetase	NA	NA	NA	NA
SQJ02025.1\|987416_988019_-	peroxiredoxin	NA	NA	NA	NA
SQJ02026.1\|988155_989343_+	cystathionine beta-lyase	NA	NA	NA	NA
SQJ02027.1\|989727_991089_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
SQJ02028.1\|991201_991708_+	Uncharacterized integral membrane protein	NA	NA	NA	NA
SQJ02029.1\|991757_992759_-	zinc transporter subunit: periplasmic-binding component of ABC superfamily	NA	NA	NA	NA
SQJ02030.1\|992936_993707_-	high-affinity zinc transporter periplasmic component	NA	NA	NA	NA
SQJ02031.1\|993706_994816_-	membrane-bound lytic murein transglycosylase A	NA	NA	NA	NA
SQJ02032.1\|995210_997370_+	putative methyltransferase	NA	NA	NA	NA
SQJ02033.1\|1004190_1006422_-	TonB-dependent heme receptor A	NA	NA	NA	NA
SQJ02034.1\|1006782_1007412_-	glutathionine S-transferase	NA	NA	NA	NA
SQJ02035.1\|1007745_1009035_-\|tRNA	seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine	A0A1B1IVT2	uncultured_Mediterranean_phage	3.3e-94	52.1

DBSCAN-SWA_5

1300600 : 1358070

Mannheimia_phage(48.65%)

integrase,lysis,protease,tail,capsid,holin,tRNA,terminase,head,portal,plate

attL 1291199:1291215|attR 1361568:1361584

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1291199:1291215	attL	NA	NA	NA	NA
SQJ02538.1\|1300600_1301992_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	7.2e-23	31.2
SQJ02541.1\|1302185_1303076_+	acetyl-CoA carboxylase, beta (carboxyltranferase) subunit	NA	NA	NA	NA
SQJ02543.1\|1303077_1304382_+	folylpolyglutamate synthase	NA	NA	NA	NA
SQJ02545.1\|1304669_1305350_-	SanA	NA	NA	NA	NA
SQJ02547.1\|1305507_1306356_+	homoserine O-acetyltransferase	NA	NA	NA	NA
SQJ02549.1\|1306333_1306585_+	homoserine O-acetyltransferase	NA	NA	NA	NA
SQJ02634.1\|1306718_1309283_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.0e-103	32.3
SQJ02647.1\|1309882_1311646_-	YcaO-like family	NA	NA	NA	NA
SQJ02713.1\|1311782_1312259_-	Uncharacterised protein	NA	NA	NA	NA
SQJ02715.1\|1312494_1313301_+	type 11 methyltransferase	NA	NA	NA	NA
SQJ02716.1\|1313352_1314054_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
SQJ02788.1\|1314097_1314958_-	tellurite resistance protein	NA	NA	NA	NA
SQJ02969.1\|1315070_1317119_-\|tRNA	methionyl-tRNA synthetase	A0A1V0S905	Catovirus	1.2e-26	24.7
SQJ03121.1\|1317269_1318382_+	antiporter inner membrane protein	NA	NA	NA	NA
SQJ03122.1\|1318428_1319091_-	dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive	NA	NA	NA	NA
SQJ03140.1\|1319204_1319879_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA
SQJ03154.1\|1320586_1321597_-\|portal	portal vertex protein	Q19UT6	Mannheimia_phage	2.1e-120	61.9
SQJ03171.1\|1321606_1323319_-	Terminase, ATPase subunit	A0A0M3LRV4	Mannheimia_phage	1.3e-215	65.4
SQJ03175.1\|1323450_1323879_+	Uncharacterised protein family (UPF0150)	NA	NA	NA	NA
SQJ03182.1\|1324144_1324777_+	prophage antirepressor	D0UIM5	Aggregatibacter_phage	4.1e-34	38.6
SQJ03374.1\|1324954_1325761_+\|capsid	capsid scaffolding protein	A0A0M3LNM2	Mannheimia_phage	2.5e-60	58.6
SQJ03377.1\|1325782_1326832_+\|capsid	major capsid protein	Q19UT3	Mannheimia_phage	5.7e-89	51.9
SQJ03378.1\|1326843_1327494_+\|terminase	terminase, endonuclease subunit	Q19US0	Mannheimia_phage	5.3e-45	46.0
SQJ03379.1\|1327786_1328293_+\|head	putative phage head completion	A0A0M3LNL8	Mannheimia_phage	1.3e-33	51.0
SQJ03380.1\|1328292_1328502_+\|tail	Probable bacteriophage tail protein X	E5G6M9	Salmonella_phage	4.5e-06	40.6
SQJ03381.1\|1328503_1328725_+\|holin	holin	NA	NA	NA	NA
SQJ03382.1\|1328717_1329236_+	phage-like lysozyme	A0A0M3LPQ1	Mannheimia_phage	9.5e-37	46.6
SQJ03383.1\|1329220_1329571_+\|lysis	phage lysis regulatory protein, LysB family	NA	NA	NA	NA
SQJ03384.1\|1329745_1329961_+	DnaK suppressor protein	A0A0M3LS11	Mannheimia_phage	1.1e-10	47.9
SQJ03385.1\|1329957_1330428_+\|tail	Probable bacteriophage tail completion protein	E5G6N3	Salmonella_phage	2.8e-27	44.6
SQJ03409.1\|1330427_1330886_+\|tail	Probable bacteriophage tail completion protein	A0A2H4J927	uncultured_Caudovirales_phage	3.5e-27	51.1
SQJ03410.1\|1330863_1331136_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03421.1\|1331205_1333941_+\|tail	phage-related tail protein	A0A0A7NRZ9	Enterobacteria_phage	2.2e-87	36.3
SQJ03426.1\|1334041_1334599_+	Uncharacterised protein	NA	NA	NA	NA
SQJ03428.1\|1334607_1335036_+	Uncharacterised protein	NA	NA	NA	NA
SQJ03430.1\|1335145_1335739_+\|plate	phage P2-like baseplate assembly protein	A0A0M3LPY9	Mannheimia_phage	6.0e-43	66.0
SQJ03431.1\|1335740_1336079_+\|plate	baseplate assembly protein W	Q19UQ6	Mannheimia_phage	4.5e-19	56.6
SQJ03433.1\|1336075_1336990_+\|plate	phage-like baseplate assembly protein	Q19UQ5	Mannheimia_phage	3.9e-94	59.2
SQJ03435.1\|1336976_1337519_+\|tail	Probable bacteriophage tail protein gpI	Q19UQ4	Mannheimia_phage	3.9e-49	52.5
SQJ03437.1\|1337527_1340050_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	7.2e-255	69.1
SQJ03439.1\|1340061_1340670_+	Uncharacterised protein	Q94MX9	Haemophilus_virus	1.1e-79	80.5
SQJ03440.1\|1340662_1341061_+	Uncharacterised protein	F6MIM0	Haemophilus_phage	6.4e-25	51.3
SQJ03442.1\|1341300_1342485_+\|tail	phage tail sheath-like protein	A0A1S6KZY7	Salmonella_phage	1.7e-102	48.2
SQJ03444.1\|1342488_1342995_+\|tail	phage-related tail protein	Q19UP8	Mannheimia_phage	3.2e-53	59.5
SQJ03480.1\|1343063_1343363_+\|tail	Probable bacteriophage tail protein E	A0A0F7LBN9	Escherichia_phage	1.8e-11	42.9
SQJ03481.1\|1343362_1343509_+\|tail	Probable bacteriophage tail protein E+E'	E5E3Q0	Burkholderia_phage	2.2e-07	65.0
SQJ03482.1\|1343636_1344074_+\|tail	phage-related tail protein	A0A0M3LQ18	Mannheimia_phage	5.4e-41	56.6
SQJ03483.1\|1344073_1344958_+	regulator of late gene expression	R9QBT3	Mannheimia_phage	1.5e-90	60.5
SQJ03484.1\|1344958_1345294_+	d protein bacteriophage 186 and p2-like protein	Q19UP4	Mannheimia_phage	3.2e-25	57.1
SQJ03486.1\|1345311_1345701_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03488.1\|1345760_1347521_-	Uncharacterized protein conserved in bacteria (DUF2326)	NA	NA	NA	NA
SQJ03495.1\|1347523_1347769_-	Uncharacterised protein	NA	NA	NA	NA
SQJ03746.1\|1347765_1348527_-	Predicted restriction endonuclease	NA	NA	NA	NA
SQJ03748.1\|1348554_1348794_-	Excalibur calcium-binding domain	A0A0R6PHV6	Moraxella_phage	8.9e-06	53.5
SQJ04178.1\|1348790_1349297_-	BRCT domain type II	Q19UP0	Mannheimia_phage	7.9e-36	43.7
SQJ04198.1\|1349305_1349890_-	phage repressor	Q76H56	Enterobacteria_phage	6.3e-21	34.4
SQJ04204.1\|1349855_1350002_-	phage-related repressor protein	NA	NA	NA	NA
SQJ04241.1\|1350121_1350346_+	Uncharacterized protein conserved in bacteria, prophage-related	Q76H55	Enterobacteria_phage	7.0e-13	55.9
SQJ04398.1\|1350400_1350643_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04399.1\|1350677_1350971_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04423.1\|1351051_1351207_+	Uncharacterised protein	NA	NA	NA	NA
SQJ04425.1\|1351423_1351927_+	Uncharacterised protein	NA	NA	NA	NA
SQJ04427.1\|1351811_1352072_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04429.1\|1352068_1352203_-	Uncharacterised protein	NA	NA	NA	NA
SQJ04431.1\|1352492_1352705_+	Uncharacterised protein	NA	NA	NA	NA
SQJ04433.1\|1352782_1353154_+	Uncharacterised protein	NA	NA	NA	NA
SQJ04435.1\|1353157_1353400_+	Uncharacterised protein	NA	NA	NA	NA
SQJ04437.1\|1353396_1353510_+	Uncharacterised protein	NA	NA	NA	NA
SQJ04438.1\|1353525_1353834_+	Uncharacterised protein	NA	NA	NA	NA
SQJ04439.1\|1353843_1356030_+	Probable bacteriophage replication protein A	Q94N00	Haemophilus_virus	1.7e-164	42.5
SQJ04440.1\|1356084_1356591_+	Uncharacterised protein	A0A0M3LTD8	Mannheimia_phage	3.7e-25	42.9
SQJ04441.1\|1356590_1356758_+	DNA binding domain, excisionase family	NA	NA	NA	NA
SQJ04661.1\|1356738_1358070_-\|integrase	phage integrase family protein	A0A1V0E8G8	Vibrio_phage	4.2e-44	29.1
1361568:1361584	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1464332 : 1495077

Mannheimia_phage(22.58%)

integrase,terminase

attL 1487087:1487103|attR 1501183:1501199

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ05044.1\|1464332_1464509_-	Uncharacterized protein conserved in bacteria	Q7Y5U2	Haemophilus_phage	8.5e-22	93.1
SQJ05048.1\|1464649_1465831_-	phage Mu protein gp30-like protein	Q7Y5U5	Haemophilus_phage	6.4e-89	76.7
SQJ05051.1\|1465859_1467194_-	phage-associated protein, HI1409 family	Q7Y5U6	Haemophilus_phage	2.1e-213	84.2
SQJ05054.1\|1467195_1468539_-\|terminase	phage terminase large subunit	A0A220NQL3	Acinetobacter_phage	2.8e-125	54.4
SQJ05059.1\|1468525_1469038_-\|terminase	Probable bacteriophage terminase, small subunit	A0A1X9SFE5	Acinetobacter_phage	1.0e-19	39.2
SQJ05062.1\|1469082_1469361_+	transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	6.5e-16	66.2
SQJ05067.1\|1469555_1469891_-	putative bacteriophage protein	Q7Y5U9	Haemophilus_phage	1.5e-27	67.7
SQJ05069.1\|1469863_1470406_-	DLP12 prophage lysozyme	A0A0M3LPQ1	Mannheimia_phage	3.1e-46	52.0
SQJ05074.1\|1470386_1470638_-	Uncharacterised protein	NA	NA	NA	NA
SQJ05078.1\|1470808_1470970_-	Uncharacterised protein	NA	NA	NA	NA
SQJ05082.1\|1471097_1471610_-	Uncharacterised protein	NA	NA	NA	NA
SQJ05086.1\|1472019_1472841_-	NYN domain	A0A0R6PGY5	Moraxella_phage	3.1e-34	40.9
SQJ05089.1\|1473042_1473528_-	Uncharacterised protein	NA	NA	NA	NA
SQJ05093.1\|1473600_1473966_-	RNA polymerase sigma factor	NA	NA	NA	NA
SQJ05098.1\|1473967_1474555_-	ning recombination protein	A0A2I7RAC0	Vibrio_phage	8.3e-37	48.0
SQJ05101.1\|1474647_1475064_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	2.1e-63	84.7
SQJ05106.1\|1475100_1475325_-	Uncharacterised protein	A0A0M3LR43	Mannheimia_phage	1.1e-10	47.9
SQJ05110.1\|1475321_1475963_-	phage replication protein	D0UIL4	Aggregatibacter_phage	4.2e-34	45.0
SQJ05115.1\|1475959_1476283_-	putative phage DNA replication protein O	D0UIL5	Aggregatibacter_phage	2.8e-26	61.9
SQJ05119.1\|1476272_1476737_-	putative phage DNA replication protein O	A0A0P0IKQ2	Acinetobacter_phage	5.4e-15	45.6
SQJ05122.1\|1476738_1476981_-	Uncharacterised protein	A0A0M3LR73	Mannheimia_phage	3.5e-10	44.2
SQJ05126.1\|1477137_1477569_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05130.1\|1477582_1477810_-	DNA-binding transcriptional regulator	D0UIL8	Aggregatibacter_phage	7.9e-12	50.7
SQJ05134.1\|1477946_1478852_+	bacteriophage transcriptional regulator	B6SCU0	Bacteriophage	1.4e-38	40.8
SQJ05138.1\|1478867_1479962_+	Protein of uncharacterised function DUF262	A0A0R6PKN1	Moraxella_phage	4.0e-61	37.1
SQJ05142.1\|1479961_1480621_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05146.1\|1480577_1481609_-	modification methylase haeiii	A0A0R6PG08	Moraxella_phage	2.8e-128	66.4
SQJ05150.1\|1481996_1482167_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQJ05153.1\|1482181_1482403_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05156.1\|1482737_1482908_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05159.1\|1483072_1483903_+	KilA-N domain	Q4ZC41	Staphylococcus_virus	3.4e-76	52.2
SQJ05163.1\|1484222_1484837_+	putative prophage antirepressor	Q7Y5X0	Haemophilus_phage	1.9e-36	60.6
SQJ05165.1\|1484927_1485665_+	modification methylase DpnIIB-like	A0A0E3U2R2	Fusobacterium_phage	5.2e-113	77.5
SQJ05167.1\|1485678_1486023_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05170.1\|1486019_1486313_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05173.1\|1486325_1487246_+	recombinational DNA repair protein, rece pathway	A0A0M3LNU3	Mannheimia_phage	6.3e-116	71.5
1487087:1487103	attL	NA	NA	NA	NA
SQJ05176.1\|1487220_1487871_+	Uncharacterised protein	A0A0M3LP90	Mannheimia_phage	1.0e-83	70.6
SQJ05179.1\|1487870_1488305_+	ssDNA-binding protein	R9TP78	Rhizobium_phage	1.3e-18	36.2
SQJ05182.1\|1488366_1489146_+	Uncharacterised protein	A0A2H4FRY7	Salmonella_phage	1.4e-36	59.6
SQJ05185.1\|1489270_1490167_+	recombination associated protein	S4TWL4	Salmonella_phage	8.4e-57	43.7
SQJ05189.1\|1490163_1490409_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05192.1\|1490405_1490765_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05195.1\|1490761_1491550_+	C5 methylase	U4KJA1	Streptococcus_phage	4.0e-79	56.7
SQJ05198.1\|1491560_1492208_+	Uncharacterised protein	A0A0M3LNU4	Mannheimia_phage	1.0e-08	40.0
SQJ05201.1\|1492211_1492628_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05205.1\|1492707_1493196_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05209.1\|1493185_1493509_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05212.1\|1493501_1493774_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05215.1\|1493815_1494019_+	Uncharacterised protein	NA	NA	NA	NA
SQJ05218.1\|1494090_1495077_-\|integrase	integrase	A0A0M3LQN1	Mannheimia_phage	5.9e-96	55.6
1501183:1501199	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1728686 : 1737195

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ07801.1\|1728686_1729370_+	7-cyano-7-deazaguanine synthase	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.3e-54	50.7
SQJ07803.1\|1729362_1729788_+	6-pyruvoyl-tetrahydropterin synthase	A0A1U9WRB3	Streptococcus_virus	2.3e-20	42.0
SQJ07805.1\|1729794_1730424_+	organic radical activating protein	A0A218M2Y8	Acidovorax_phage	2.9e-11	35.2
SQJ07807.1\|1731030_1733214_+	DNA-dependent ATPase I and helicase II	A7KV33	Bacillus_phage	6.7e-116	37.6
SQJ07809.1\|1733303_1734305_+	dipeptide transporter	NA	NA	NA	NA
SQJ07811.1\|1734319_1735207_+	dipeptide transporter	NA	NA	NA	NA
SQJ07813.1\|1735216_1736209_+	dipeptide transporter	G3M9Y6	Bacillus_virus	2.0e-14	30.8
SQJ07815.1\|1736211_1737195_+	dipeptide transporter	G3M9Y6	Bacillus_virus	4.2e-17	27.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483486

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection