CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483490	Salmonella enterica subsp. enterica strain NCTC7836 genome assembly, chromosome: 1	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas6e,cas1,cas2,csa3,DEDDh,DinG	2	21	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483490_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483490_2

634082-634459

Orphan

Consensus_repeat	Method
GGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACGCTAT	PILER-CR

3 spacers

The CRISPR arrays of LS483490_2

>merge|LS483490|2|634082-634459|PILER-CR
GGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACTTCTTCATAAAACCCGCTTCGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAACCCGCTTCGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACGCTATGTCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAACCCGCTTCGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGGATGACTGTCCACGACGCTAT

>LS483490|2|1|634082-634459|PILER-CR
GGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACACTAT	ACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACTTCTTCATAAAACCCGCTTC
GGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACGCTAT	ACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAACCCGCTTC
GGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACGCTAT	GTCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAACCCGCTTC
GGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGGATGACTGTCCACGACGCTAT

Protein	Signature genes	Signature genes Name	Protein_function
LS483490.1\|SQJ12530.1\|631511_632402_+\|tartronate-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|183197
LS483490.1\|SQJ12545.1\|635531_636470_+\|TDC-operon-transcriptional-activator	unknown	unknown	gnl\|CDD\|182391
LS483490.1\|SQJ12537.1\|632499_633645_+\|Glycerate-2--kinase	unknown	unknown	gnl\|CDD\|182392
LS483490.1\|SQJ12490.1\|630715_631486_+\|5-keto-4-deoxy-D-glucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
LS483490.1\|SQJ12548.1\|636567_637557_+\|catabolic-threonine-dehydratase	unknown	unknown	gnl\|CDD\|236317
LS483490.1\|SQJ12579.1\|639989_640187_+\|propionate/acetate-kinase	unknown	unknown	gnl\|CDD\|183484
LS483490.1\|SQJ12574.1\|639642_639978_+\|propionate/acetate-kinase	unknown	unknown	gnl\|CDD\|183484
LS483490.1\|SQJ12468.1\|626111_627383_-\|D-tagatose-bisphosphate-aldolase,-class-II,-non-catalytic-subunit	unknown	unknown	gnl\|CDD\|237889
LS483490.1\|SQJ12335.1\|625317_625602_-\|PTS-system,-galactitol-specific-IIB-component	unknown	unknown	gnl\|CDD\|182372
LS483490.1\|SQJ12557.1\|638974_639652_+\|propionate/acetate-kinase	unknown	unknown	gnl\|CDD\|183484
LS483490.1\|SQJ12333.1\|622853_623897_-\|galactitol-1-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|182371
LS483490.1\|SQJ12334.1\|623940_625314_-\|PTS-system-galactitol-specific-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
LS483490.1\|SQJ12551.1\|637577_638909_+\|threonine/serine-transporter	unknown	unknown	gnl\|CDD\|184191
LS483490.1\|SQJ12470.1\|627502_628357_-\|tagatose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|181690
LS483490.1\|SQJ12597.1\|644263_645595_+\|membrane-protein	unknown	unknown	gnl\|CDD\|273283
LS483490.1\|SQJ12590.1\|642584_643949_+\|L-serine-dehydratase	unknown	unknown	gnl\|CDD\|185000
LS483490.1\|SQJ12336.1\|625632_626097_-\|PTS-system,-galactitol-specific-IIA-component	unknown	unknown	gnl\|CDD\|182023
LS483490.1\|SQJ12487.1\|628614_630186_-\|D-galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
LS483490.1\|SQJ12604.1\|645620_646640_+\|Inner-membrane-protein	unknown	unknown	gnl\|CDD\|226206
LS483490.1\|SQJ12584.1\|640220_642515_+\|formate-acetyltransferase	unknown	unknown	gnl\|CDD\|153087

Protein	Function_ID	Function_description	E-value
LS483490.1\|SQJ12530.1\|631511_632402_+\|tartronate-semialdehyde-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
LS483490.1\|SQJ12545.1\|635531_636470_+\|TDC-operon-transcriptional-activator	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
LS483490.1\|SQJ12537.1\|632499_633645_+\|Glycerate-2--kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0
LS483490.1\|SQJ12490.1\|630715_631486_+\|5-keto-4-deoxy-D-glucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
LS483490.1\|SQJ12548.1\|636567_637557_+\|catabolic-threonine-dehydratase	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
LS483490.1\|SQJ12579.1\|639989_640187_+\|propionate/acetate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	1.02256e-28
LS483490.1\|SQJ12574.1\|639642_639978_+\|propionate/acetate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	2.90745e-51
LS483490.1\|SQJ12468.1\|626111_627383_-\|D-tagatose-bisphosphate-aldolase,-class-II,-non-catalytic-subunit	gnl\|CDD\|237889	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ.	0
LS483490.1\|SQJ12335.1\|625317_625602_-\|PTS-system,-galactitol-specific-IIB-component	gnl\|CDD\|182372	PRK10310, PRK10310, PTS galactitol transporter subunit IIB.	4.56919e-60
LS483490.1\|SQJ12557.1\|638974_639652_+\|propionate/acetate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	1.81563e-136
LS483490.1\|SQJ12333.1\|622853_623897_-\|galactitol-1-phosphate-dehydrogenase	gnl\|CDD\|182371	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase.	0
LS483490.1\|SQJ12334.1\|623940_625314_-\|PTS-system-galactitol-specific-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	0
LS483490.1\|SQJ12551.1\|637577_638909_+\|threonine/serine-transporter	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
LS483490.1\|SQJ12470.1\|627502_628357_-\|tagatose-bisphosphate-aldolase	gnl\|CDD\|181690	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed.	0
LS483490.1\|SQJ12597.1\|644263_645595_+\|membrane-protein	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.63921e-164
LS483490.1\|SQJ12590.1\|642584_643949_+\|L-serine-dehydratase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
LS483490.1\|SQJ12336.1\|625632_626097_-\|PTS-system,-galactitol-specific-IIA-component	gnl\|CDD\|182023	PRK09665, PRK09665, PTS galactitol transporter subunit IIA.	8.14372e-98
LS483490.1\|SQJ12487.1\|628614_630186_-\|D-galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
LS483490.1\|SQJ12604.1\|645620_646640_+\|Inner-membrane-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	2.03552e-177
LS483490.1\|SQJ12584.1\|640220_642515_+\|formate-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0

>LS483490.1|SQJ12537.1|632499_633645_+|Glycerate-2--kinase
MKIVIAPDSYKESLSAAEVAQAIEKGFREIFPDAQYVSVPVADGGEGTVEAMIAATQGVERTAWVTGPLGEKVKACWGMSGDGKTAFIEMAAASGLALVPPEKRNPLITTSRGTGELILQALESGASNIIIGIGGSATNDGGAGMMQALGAKLRDANGADIGYGGGSLHCLSDIDISELDPRLKLCAIRVACDVSNPLIGDNGASRIFGPQKGATEENIVELDRNLAHYADIIKKSLNVDVKAAPGAGAAGGMGAALMAFLGAELRSGIEIVTAALNLEEHIHDCTLVVTGEGRIDSQSIRGKVPIGVANVAKKYHKPVIGIAGSLTHDVGIVHHYGIDAVFSVLTRIVTLEEAFRGAFDNIYRASRNVAAALAIGMRSAG
>LS483490.1|SQJ12530.1|631511_632402_+|tartronate-semialdehyde-reductase
MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVEVTR
>LS483490.1|SQJ12490.1|630715_631486_+|5-keto-4-deoxy-D-glucarate-aldolase
MNNAIFPNKFKAALAAQQVQIGCWSALASPITTEVLGLAGFDWLVLDGEHAPNDVTTLIPQLMALKGSASAPVVRVPTNEPVIIKRMLDIGFYNFLIPFVETQEEAARAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITIIVQIESQLGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQQTIQHIFARAKAHGKPCGILAPVEADARRYLEWGATFVAVGSDLGAFRASTQKLADTFKK
>LS483490.1|SQJ12487.1|628614_630186_-|D-galactarate-dehydratase
MANIEIRQESPSAFYIKVHETDNVAIIVNDHGLKAGTRFPDGLELTEHIPQGHKVALTDIPAHGEIIRYGEAIGYAVRDIPRGSWIDESLVELPKAPPLNTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKVIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLEGTEDVPAIAVESASIVRLQDEQHVGFKSMVDDILRVAERHLTKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAINEAVGKRLLDEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWYDLMDINAGTIATGEETIEDVGWKLFHFILDVASGRKKTFSDQWGLHNQLAIFNPAPVT
>LS483490.1|SQJ12470.1|627502_628357_-|tagatose-bisphosphate-aldolase
MFIISGRTMLKKAQQEGYAVPAFNIHNLETLQVVVETAAELRSPLIVAGTPGTFSYAGVGNIVAIAAELAKSWNHPLAVHLDHHEKLADIKMKVAAGVRSVMIDGSHFPFADNIALVKSVVDYCHRYDVSVEAELGRLGGQEDDLIVDGKDALYTHPEQAREFVAKTGIDSLAIAIGTAHGLYTAEPKLDFERLTEIRQRVDVPLVLHGASGLPTRDITRAISLGICKVNVATELKIAFSGALKNYLTQHAEASDPRHYMIPAKAAMKEVVRKVITDCGCEGKL
>LS483490.1|SQJ12468.1|626111_627383_-|D-tagatose-bisphosphate-aldolase,-class-II,-non-catalytic-subunit
MKEIISRHKAGEQIGICSVCSAHPLVIESALRFDLNSGNKVLIEATSNQVNQFGGYTGMKPADFRDFVYGIAQEVGFPRERLILGGDHLGPNCWQNEPADTAMEKSVELIKAYVAAGFSKIHLDASMSCADDPTPLDPMVVAKRAALLCQAAETTATDEQKRHLTYVIGTEVPVPGGEASAINAVHVTREQDAARTLQTHQAAFRALGLEEALNRVIAIVVQPGVEFDHTQIIHYQPQAAKALSDWIKETPMVYEAHSTDYQTRQAYRALVRDHYAILKVGPALTFALREAIFALAQMENELISPEQRSRVLEVIDEVMLNEPGYWKKYYRPTWSQAMVDIHFSLSDRIRYYWPHPRIRQSVEKLIANLNNVTLPLGLISQFMPVQFERLSEGVLTPTPHNLIIDKIQDVLRAYRFGCTPDVA
>LS483490.1|SQJ12336.1|625632_626097_-|PTS-system,-galactitol-specific-IIA-component
MSQLFVRTGITFDSSQQALAHIGKEMLAKGVVHDSYPQALVEREASFPTGIALERHAVAIPHCEAVHAKSPAIYLIRPDKPVMFQQADDDEEIAVSLIIALIVENPAAQLKLLRRLFSELQNPSTLDALLSAPDAELAIRFQETILEPEQCVQV
>LS483490.1|SQJ12335.1|625317_625602_-|PTS-system,-galactitol-specific-IIB-component
MKRKVIVACGGAVATSTMAAEEIKELCDANHIELDLVQCRVTEIETYMDGADLICTTARVDRAFGDIPVVHGMPFVSGVGIEALQQKILSILMG
>LS483490.1|SQJ12334.1|623940_625314_-|PTS-system-galactitol-specific-transporter-subunit-IIC
MFSEIMRYILDLGPTVMLPLVIIVFSKLLGMKLGDCFKSGLHIGIGFVGIGLVIGLMLDSIGPAAKAMAEHFQINLHVIDVGWPGSSPMTWASQIALVAIPVAIGVNVLMLVTRMTRVVNVDIWNIWHMTFTGAMLHLATGSYWLGILGVVVHAAFVYKLGDWFAKDTRDYFGLEGIAIPHGSSAYLGPVAVLVDTIIEKIPGLNRIHFSADDVQKRFGPFGEPVTVGFVMGLVIGVLAGYDAKAVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAKHARKRLQAKFGGQEFLIGLDPALLLGHTSVVSASLIFIPLTILIAVLVPGNQVLPFGDLATIGFFIAMAVAVHQGNLFRTLISGVIIMGITLWIATQTIGLHTQLAANAGALKAGGQVASLDQGGSPITWLLIQLFTWQNIVGFAVIAIIYLAGVLLTWRRARQFVAAEKATALQQSQIAS
>LS483490.1|SQJ12333.1|622853_623897_-|galactitol-1-phosphate-dehydrogenase
MKSVVIHAEGDVRVEERPLPQLQAEDDVLVKVVSSGLCGSDIPRIFAQGAHYYPITLGHEFSGYVESYGTGVTDMQPGDAVACVPLLPCFHCPQCERGYFSLCKQYQFVGSRSEGGNAEYVVVKRANLFRLPSDMPIEDGAFIEPITVGLHAFHLAQGCEGKNVIIVGAGTIGLLALQCARELGARSVTAIDINPQKLELAKALGATHTCNSREMTADDIQTALSDIQFDQLVLETAGTPQTVSLAIDIAGPRAQLALVGTLHHDLTLTTRTFGLILRKELTLLGSWMNYSAPWPGEEWETAARLLAEKRLQLAPLIAHRGDAESFAEAVKALNGAPMQGKILLQLS
>LS483490.1|SQJ12545.1|635531_636470_+|TDC-operon-transcriptional-activator
MNTLVLPKTQHLVVFQEVIRSGSIGSAAKSLGLTQPAVSKIISDVEAYFGVELIVRKNTGVTLTEAGQVLLSWSESITREMKNMINEMNSMTCNTVVDVSFGFPSLIGFTFMSDMIHKFKEVFPKAQVSMYEAQLSSFLPALRDGRLDFAIGTLSNEMQLQDLHVEPLFESEFVLVASKSRTCTGTITLESLKDEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTTPFGSNQFITIPIKDTLPVARYAAVWSKNYRIKKAASVLVELAKQYSSYNGCRRRQLIEIE
>LS483490.1|SQJ12548.1|636567_637557_+|catabolic-threonine-dehydratase
MHITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVETEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYAGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITEGAGALACAALLSGKLDSHIQNRKTVSIISGGNIDLSRVSQITGLVDA
>LS483490.1|SQJ12551.1|637577_638909_+|threonine/serine-transporter
MSTTDSIVSSQAKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLQMPALNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLSNIALTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKEFGREFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMADAKAQNIPVLSYLANHFASLSGTKSTFATVLEYGASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSMGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTLIGLLTILNIVYKLF
>LS483490.1|SQJ12557.1|638974_639652_+|propionate/acetate-kinase
MNEFPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALKAIAFELEKRDLTDSVALIGHRIAPRLESYLRSPSLLTDEIIDNIRRVSPLAPLHNYANLSGIDAARRLFPAVRQVAVFDTSFHQTLAPEAYLYGLPWEYFSSLGVRRYGFHGTSHRYVSRRAYELLDLDEKNSGLIVAHLGNGRLSARYAMVRAWIPQWG
>LS483490.1|SQJ12574.1|639642_639978_+|propionate/acetate-kinase
MGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERRPVSDKKRLSTVSPVTLPDTRHRYIGWMALFLPAVLVKIQY
>LS483490.1|SQJ12579.1|639989_640187_+|propionate/acetate-kinase
MIEHLGVLGLTLEVEINKQPNSHGERIISANPSQVICAVIPTNEEKMIALDAIHLGNVKAPVEFA
>LS483490.1|SQJ12584.1|640220_642515_+|formate-acetyltransferase
MKVNIDTSDMLYAEAWRDFKGTDWKEEINVRDFIQHNYTPYEGDESFLADATPATTALWEKVMAGIRIENATHAPVDFDTNIATTITAHDAGYIEKELEKIVGLQTDKPLKRALHPFGGVNMIKSSFHAYGREMDADFEYTFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGIRYLVRERELQFADLQSNLEQGQNLEATIRLREELAEHRRALLQMQEMAAKYGYDISRPARNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFNAGLLTEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEALPVAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQIGPKTAPLTDEVLDYDAVMESLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHERDVYRTMACGIAGLSVAADSLSAIRYAQVKPIRDENGLAIDFAIEGEYPQYGNNDERVDSIACDLVKRFMQKISVLPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDAVRKTNLVGLLDGYFHHEAQVEGGQHLNVNVMNREMLLDAIEHPENYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAM
>LS483490.1|SQJ12590.1|642584_643949_+|L-serine-dehydratase
MISAFDIFKIGIGPSSSHTVGPMNAGKCFIDRLIDSGDLPRTTRITVDLYGSLSLTGKGHATDTAIIMGLAGNTPQDVNIDSIPAFIQEVARSSRLSVAGGAHVVDFPVADSILFHAETLARHENGMRITAWHGQTPLLHKTYYSIGGGFIVEEERFGQSHDVEKSVPYDFHSASELLTLCERQGLSVSGLMMQNELALRSKEQIDAGFARIWQVMATGIERGMNTEGVLPGPLNVPRRAVALRRLLVSSDNLSRDPMNVIDWINMFALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNANSIARYLLSAGAIGMLYKMNASISGAEVGCQGEVGVACSMAAAGLTELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMALRRTSEPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>LS483490.1|SQJ12597.1|644263_645595_+|membrane-protein
MESASNTSVILDASAPARRAGMTESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNIGALPPMALLIKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAGWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKIKENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGASLYLIIITGLLLCVSPFLAFS
>LS483490.1|SQJ12604.1|645620_646640_+|Inner-membrane-protein
MFESKINPLWQSFILAVQEEVKPALGCTEPISLALAAAAAAAELDGTVERIDAWVSPNLMKNGMGVTVPGTGMVGLPIAAALGALGGDAKAGLEVLKDASAKAVADAKAMLAAGHVAVMLQEPCNDILFSRAKVYSGDSWACVTIVGDHTNIVRIETDKGVVFTQADNAQGEEKTSPLEVLSHTSLEEILAFVNAVPFDAIRFILDAARLNGALSQEGLRGSWGLHIGSTLAKQCDRGLLAKDLSTAILIRTSAASDARMGGATLPAMSNSGSGNQGITATVPVMVVAEHVGADDERLARALMLSHLSAIYYSPSAFRVCRRCARQPRRRWARRRVWRG

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Crispr_ID: LS483490_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483490_3

957959-958962

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
TTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

16 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of LS483490_3

>merge|LS483490|3|957959-958962|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGTAATTCGGTGTGAGTTTTATATGCCATTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGGCCAACCAAAAGTGAGACACGGTGGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTGTCACAGGCGTGAACGAAATCAAGCGTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCCGCGCCGACGTGGAGCGTAAATAATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGTCTTCCCCTTTGTTGCCCCTGCAGATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCTTCTGCAGTAGCTGTTCCAATAGTTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGATCTGTATAGAGAAAAGAAGCGGCAGCTTTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAACTCGCGCACACATTCACCGGAGCAGATAGGTGTTCCCCGCGCCAGCGGGGATAAACCGAACCGATGTAATTAAAATGACCTCATCAGAATGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCGGGACCCTTCAATTATTGCCGTGTCGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTGGGAACAGAAATACGGTACTGAAGAGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCAGGTATCACCTCCGCCATGGGGATCGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCTCTACCACGGAGCAAAAATGATAAGCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATGATCGTTTTTTTCGTTACGTCGCGCAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGTAGCTTGGTTGTGGACTCATCCTAACGGGGTGTTCCCGCGCCAGCGGGGATAAACCGAGCGGCTAAACCTGCCGGTTATCGCTGAGCAGGTGTTCCCCGCGTCAGCGGGGATAGCCGT

>LS483490|3|2|957959-958170|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATTCGGTGTGAGTTTTATATGCCATTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGGCCAACCAAAAGTGAGACACGGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGTCACAGGCGTGAACGAAATCAAGCGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCCGCGCCGACGTGGAGCGTAAATAATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGTCTTCCCCTTTGTTGCCCCTGCAGATCCGTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTTCTGCAGTAGCTGTTCCAATAGTTGGCGTG
TTCCCCGCGCCAGCGGGGATAAACCG	ATCTGTATAGAGAAAAGAAGCGGCAGCTTTGCGTG
TTCCCCGCGCCAGCGGGGATAAACCG	AAACTCGCGCACACATTCACCGGAGCAGATAGGTG
TTCCCCGCGCCAGCGGGGATAAACCG	AACCGATGTAATTAAAATGACCTCATCAGAATGTG
TTCCCCGCGCCAGCGGGGATAAACCG	ATCCGGGACCCTTCAATTATTGCCGTGTCGGCGTG
TTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGGAACAGAAATACGGTACTGAAGAGGAGTG
TTCCCCGCGCCAGCGGGGATAAACCG	CGCAGGTATCACCTCCGCCATGGGGATCGCGCGTG
TTCCCCGCGCCAGCGGGGATAAACCG	GCCTCTACCACGGAGCAAAAATGATAAGCGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCG	GATGATCGTTTTTTTCGTTACGTCGCGCAAATGTG
TTCCCCGCGCCAGCGGGGATAAACCG	CCGTAGCTTGGTTGTGGACTCATCCTAACGGGGT


>LS483490|3|2|957959-958962|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATTCGGTGTGAGTTTTATATGCCATTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGGCCAACCAAAAGTGAGACACGGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGTCACAGGCGTGAACGAAATCAAGCGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCCGCGCCGACGTGGAGCGTAAATAATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGTCTTCCCCTTTGTTGCCCCTGCAGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTTCTGCAGTAGCTGTTCCAATAGTTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTGTATAGAGAAAAGAAGCGGCAGCTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACTCGCGCACACATTCACCGGAGCAGATAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGATGTAATTAAAATGACCTCATCAGAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGGGACCCTTCAATTATTGCCGTGTCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGGAACAGAAATACGGTACTGAAGAGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGGTATCACCTCCGCCATGGGGATCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCTCTACCACGGAGCAAAAATGATAAGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGATCGTTTTTTTCGTTACGTCGCGCAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTAGCTTGGTTGTGGACTCATCCTAACGG
GGTGTTCCCGCGCCAGCGGGGATAAACCG	AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG
GTGTTCCCCGCGTCAGCGGGGATAGCCGT

>LS483490|3|1|957959-958962|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATTCGGTGTGAGTTTTATATGCCATTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGGCCAACCAAAAGTGAGACACGGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGTCACAGGCGTGAACGAAATCAAGCGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCCGCGCCGACGTGGAGCGTAAATAATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGTCTTCCCCTTTGTTGCCCCTGCAGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTTCTGCAGTAGCTGTTCCAATAGTTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTGTATAGAGAAAAGAAGCGGCAGCTTTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAACTCGCGCACACATTCACCGGAGCAGATAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACCGATGTAATTAAAATGACCTCATCAGAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGGGACCCTTCAATTATTGCCGTGTCGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGGAACAGAAATACGGTACTGAAGAGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAGGTATCACCTCCGCCATGGGGATCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCTCTACCACGGAGCAAAAATGATAAGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATGATCGTTTTTTTCGTTACGTCGCGCAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTAGCTTGGTTGTGGACTCATCCTAACGG
GGTGTTCCCGCGCCAGCGGGGATAAACCG	AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG
GTGTTCCCCGCGTCAGCGGGGATAGCCGT

>LS483490|3|3|958267-958901|PILER-CR
	TAATTCGGTGTGAGTTTTATATGCCATTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGGCCAACCAAAAGTGAGACACGGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGTCACAGGCGTGAACGAAATCAAGCGTCT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCCGCGCCGACGTGGAGCGTAAATAATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGTCTTCCCCTTTGTTGCCCCTGCAGATCCGTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTTCTGCAGTAGCTGTTCCAATAGTTGGCGTG
TTCCCCGCGCCAGCGGGGATAAACCG	ATCTGTATAGAGAAAAGAAGCGGCAGCTTTGCGTG
TTCCCCGCGCCAGCGGGGATAAACCG	AAACTCGCGCACACATTCACCGGAGCAGATAGGTG
TTCCCCGCGCCAGCGGGGATAAACCG	AACCGATGTAATTAAAATGACCTCATCAGAATGTG
TTCCCCGCGCCAGCGGGGATAAACCG	ATCCGGGACCCTTCAATTATTGCCGTGTCGGCGTG
TTCCCCGCGCCAGCGGGGATAAACCG	ACGTGGGAACAGAAATACGGTACTGAAGAGGAGTG
TTCCCCGCGCCAGCGGGGATAAACCG	CGCAGGTATCACCTCCGCCATGGGGATCGCGCGTG
TTCCCCGCGCCAGCGGGGATAAACCG	GCCTCTACCACGGAGCAAAAATGATAAGCGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCG	GATGATCGTTTTTTTCGTTACGTCGCGCAAATGTG
TTCCCCGCGCCAGCGGGGATAAACCG	CCGTAGCTTGGTTGTGGACTCATCCTAACGGGGT
GTTCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
LS483490.1\|SQJ14367.1\|951614_952202_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185169
LS483490.1\|SQJ14414.1\|970791_971352_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LS483490.1\|SQJ14354.1\|947527_948028_-\|Protein-sfmH-Flags:-Precursor	unknown	unknown	gnl\|CDD\|185178
LS483490.1\|SQJ14384.1\|959059_959857_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158
LS483490.1\|SQJ14388.1\|959946_960309_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483490.1\|SQJ14374.1\|953836_955474_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483490.1\|SQJ14370.1\|952808_953609_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483490.1\|SQJ14380.1\|956990_957662_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483490.1\|SQJ14364.1\|948856_951481_-\|outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
LS483490.1\|SQJ14398.1\|964345_965080_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483490.1\|SQJ14358.1\|948053_948383_-\|chaperone-protein-PapD	unknown	unknown	gnl\|CDD\|185177
LS483490.1\|SQJ14351.1\|947041_947455_-\|fimbrial-subunit	unknown	unknown	gnl\|CDD\|185179
LS483490.1\|SQJ14410.1\|970276_970795_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|187800
LS483490.1\|SQJ14391.1\|960732_962532_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483490.1\|SQJ14377.1\|955556_956855_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483490.1\|SQJ14407.1\|969239_970151_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483490.1\|SQJ14401.1\|965167_966121_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483490.1\|SQJ14404.1\|966564_969228_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483490.1\|SQJ14395.1\|962531_964244_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483490.1\|SQJ14361.1\|948626_948824_-\|chaperone-protein-PapD	unknown	unknown	gnl\|CDD\|185177

Protein	Function_ID	Function_description	E-value
LS483490.1\|SQJ14367.1\|951614_952202_-\|fimbrial-subunit	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
LS483490.1\|SQJ14414.1\|970791_971352_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.97914e-34
LS483490.1\|SQJ14354.1\|947527_948028_-\|Protein-sfmH-Flags:-Precursor	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.24332e-105
LS483490.1\|SQJ14384.1\|959059_959857_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	9.9681e-103
LS483490.1\|SQJ14388.1\|959946_960309_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
LS483490.1\|SQJ14374.1\|953836_955474_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483490.1\|SQJ14370.1\|952808_953609_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159
LS483490.1\|SQJ14380.1\|956990_957662_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
LS483490.1\|SQJ14364.1\|948856_951481_-\|outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
LS483490.1\|SQJ14398.1\|964345_965080_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	6.96009e-139
LS483490.1\|SQJ14358.1\|948053_948383_-\|chaperone-protein-PapD	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	8.51657e-74
LS483490.1\|SQJ14351.1\|947041_947455_-\|fimbrial-subunit	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	6.14389e-88
LS483490.1\|SQJ14410.1\|970276_970795_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|187800	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.13719e-46
LS483490.1\|SQJ14391.1\|960732_962532_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483490.1\|SQJ14377.1\|955556_956855_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483490.1\|SQJ14407.1\|969239_970151_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.46323e-117
LS483490.1\|SQJ14401.1\|965167_966121_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483490.1\|SQJ14404.1\|966564_969228_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483490.1\|SQJ14395.1\|962531_964244_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483490.1\|SQJ14361.1\|948626_948824_-\|chaperone-protein-PapD	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	8.8482e-17

>LS483490.1|SQJ14380.1|956990_957662_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483490.1|SQJ14377.1|955556_956855_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVDAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483490.1|SQJ14374.1|953836_955474_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>LS483490.1|SQJ14370.1|952808_953609_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483490.1|SQJ14367.1|951614_952202_-|fimbrial-subunit
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>LS483490.1|SQJ14364.1|948856_951481_-|outer-membrane-usher-protein
MLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHHDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPARRWRQPLKPRPYRWLTTMR
>LS483490.1|SQJ14361.1|948626_948824_-|chaperone-protein-PapD
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVILTAMKFNHRHAEKRQRHSALSRTGVAGRR
>LS483490.1|SQJ14358.1|948053_948383_-|chaperone-protein-PapD
MDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASDFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>LS483490.1|SQJ14354.1|947527_948028_-|Protein-sfmH-Flags:-Precursor
MLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>LS483490.1|SQJ14351.1|947041_947455_-|fimbrial-subunit
MTFHGKLINPPACTINNGETLEVSFSSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>LS483490.1|SQJ14384.1|959059_959857_+|beta-lactamase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483490.1|SQJ14388.1|959946_960309_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>LS483490.1|SQJ14391.1|960732_962532_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEAHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>LS483490.1|SQJ14395.1|962531_964244_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483490.1|SQJ14398.1|964345_965080_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483490.1|SQJ14401.1|965167_966121_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNIEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483490.1|SQJ14404.1|966564_969228_+|helicase
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFANSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEHVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>LS483490.1|SQJ14407.1|969239_970151_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPETPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDAAIFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAR
>LS483490.1|SQJ14410.1|970276_970795_+|CRISPR-associated-protein-CasA
MFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDRVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>LS483490.1|SQJ14414.1|970791_971352_+|transposase
MSIVTKDDKATLLQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD

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Crispr_ID: LS483490_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483490_4

975118-976183

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGN	CRT

17 spacers

cas2,cas1,cas6e,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LS483490_4

>merge|LS483490|4|975118-976183|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCATTTATAGAAACGTGCCGCCCCCGATTCACGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCGTCAGATCGCGCTGGCGGCTGTTGAGAACGTGTTCCCCGCGCCAGCGGGGATAAACCGATCACGTTACGATTGAGTGGGCGAATGTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGACTTCAATAGTGCTTTTTATGTCATAGACTCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCACCGACGATAACATCTGGTTCGCAAAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCTAAAAAAAGAAACGCCCAATACCAATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCCGAGGCGTTCGGCGGCCAGACGTCACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCACCGACGATAACATCTGGTTCGCAAAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCTAAAAAAAGAAACGGCCCAATACCAATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCCGAGGCGTTCGGCGGCCAGACGTCACAAGTGTTCCCGCGCCAGCGGGGATAAACCGCTTGTGAATACTTTTCAGATGCTCCAGGTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTTATTCGAGCGGGTGCAGGACAACCACGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGAAGTTAATCCCTGCGGGAACGGTTGCGCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCAGAACCGAACGCTGCCCGGCGTTAAAGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTGCATACGCCAGACGGCTGGAGGTGCGAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGACGCCCATGTCTCCAGCAAGAGTTTTAAAGTCTTCCCCGCGCCAGCGGGGATAAACCGGAGCGAGTTCGCTACTACCGTGAGCAAAGCCTGTGTTCCCCGCGCCAGCGGGGATAAACAC

>LS483490|4|4|975118-976183|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTTATAGAAACGTGCCGCCCCCGATTCACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCGTCAGATCGCGCTGGCGGCTGTTGAGAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCACGTTACGATTGAGTGGGCGAATGTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTTCAATAGTGCTTTTTATGTCATAGACTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACCGACGATAACATCTGGTTCGCAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCTAAAAAAAGAAACGCCCAATACCAATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGAGGCGTTCGGCGGCCAGACGTCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACCGACGATAACATCTGGTTCGCAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCTAAAAAAAGAAACGGCCCAATACCAATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGAGGCGTTCGGCGGCCAGACGTCACAAGTGTT
CCCGCGCCAGCGGGGATAAACCGCTTGTG	AATACTTTTCAGATGCTCCAGGTCAAGTGTTC
CCCGCGCCAGCGGGGATAAACCGGATTTA	TTCGAGCGGGTGCAGGACAACCACGAGTGTTC
CCCGCGCCAGCGGGGATAAACCGTGAAGT	TAATCCCTGCGGGAACGGTTGCGCGTGTGTTC
CCCGCGCCAGCGGGGATAAACCGTCCAGA	ACCGAACGCTGCCCGGCGTTAAAGCAGTGTTC
CCCGCGCCAGCGGGGATAAACCGAGTGCA	TACGCCAGACGGCTGGAGGTGCGAATGTGTTC
CCCGCGCCAGCGGGGATAAACCGGGGACG	CCCATGTCTCCAGCAAGAGTTTTAAAGTCTTC
CCCGCGCCAGCGGGGATAAACCGGAGCGA	GTTCGCTACTACCGTGAGCAAAGCCTGTGTTC
CCCGCGCCAGCGGGGATAAACAC

>LS483490|4|3|975118-976183|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTTATAGAAACGTGCCGCCCCCGATTCACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCGTCAGATCGCGCTGGCGGCTGTTGAGAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCACGTTACGATTGAGTGGGCGAATGTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTTCAATAGTGCTTTTTATGTCATAGACTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACCGACGATAACATCTGGTTCGCAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCTAAAAAAAGAAACGCCCAATACCAATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGAGGCGTTCGGCGGCCAGACGTCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACCGACGATAACATCTGGTTCGCAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCTAAAAAAAGAAACGGCCCAATACCAATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGAGGCGTTCGGCGGCCAGACGTCACA
AGTGTTCCCGCGCCAGCGGGGATAAACCG	CTTGTGAATACTTTTCAGATGCTCCAGGTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTATTCGAGCGGGTGCAGGACAACCACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAGTTAATCCCTGCGGGAACGGTTGCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCAGAACCGAACGCTGCCCGGCGTTAAAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGCATACGCCAGACGGCTGGAGGTGCGAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGACGCCCATGTCTCCAGCAAGAGTTTTAAA
GTCTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGAGTTCGCTACTACCGTGAGCAAAGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>LS483490|4|2|975118-976183|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTTATAGAAACGTGCCGCCCCCGATTCACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCGTCAGATCGCGCTGGCGGCTGTTGAGAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCACGTTACGATTGAGTGGGCGAATGTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTTCAATAGTGCTTTTTATGTCATAGACTCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACCGACGATAACATCTGGTTCGCAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCTAAAAAAAGAAACGCCCAATACCAATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGAGGCGTTCGGCGGCCAGACGTCACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACCGACGATAACATCTGGTTCGCAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCTAAAAAAAGAAACGGCCCAATACCAATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGAGGCGTTCGGCGGCCAGACGTCACAA
GTGTTCCCGCGCCAGCGGGGATAAACCGC	TTGTGAATACTTTTCAGATGCTCCAGGTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTATTCGAGCGGGTGCAGGACAACCACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAAGTTAATCCCTGCGGGAACGGTTGCGCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCAGAACCGAACGCTGCCCGGCGTTAAAGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGCATACGCCAGACGGCTGGAGGTGCGAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGACGCCCATGTCTCCAGCAAGAGTTTTAAA
GTCTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGAGTTCGCTACTACCGTGAGCAAAGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483490.1\|SQJ14468.1\|982524_983574_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LS483490.1\|SQJ14420.1\|971832_972423_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|187777
LS483490.1\|SQJ14436.1\|979838_980444_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LS483490.1\|SQJ14434.1\|978412_979852_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483490.1\|SQJ14404.1\|966564_969228_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483490.1\|SQJ14414.1\|970791_971352_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LS483490.1\|SQJ14466.1\|982048_982528_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LS483490.1\|SQJ14423.1\|973160_973811_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LS483490.1\|SQJ14426.1\|973807_974695_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LS483490.1\|SQJ14470.1\|983554_984316_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LS483490.1\|SQJ14463.1\|981008_981320_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LS483490.1\|SQJ14432.1\|977494_978403_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483490.1\|SQJ14410.1\|970276_970795_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|187800
LS483490.1\|SQJ14464.1\|981338_982049_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LS483490.1\|SQJ14430.1\|976197_977244_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483490.1\|SQJ14407.1\|969239_970151_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483490.1\|SQJ14401.1\|965167_966121_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483490.1\|SQJ14428.1\|974727_975021_+\|ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
LS483490.1\|SQJ14445.1\|980494_980818_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LS483490.1\|SQJ14417.1\|971365_971869_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
LS483490.1\|SQJ14468.1\|982524_983574_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LS483490.1\|SQJ14420.1\|971832_972423_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|187777	cd09646, Cas7_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cse4/CasC family.	2.24196e-73
LS483490.1\|SQJ14436.1\|979838_980444_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
LS483490.1\|SQJ14434.1\|978412_979852_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483490.1\|SQJ14404.1\|966564_969228_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483490.1\|SQJ14414.1\|970791_971352_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.97914e-34
LS483490.1\|SQJ14466.1\|982048_982528_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
LS483490.1\|SQJ14423.1\|973160_973811_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	8.27813e-77
LS483490.1\|SQJ14426.1\|973807_974695_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	8.87436e-158
LS483490.1\|SQJ14470.1\|983554_984316_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
LS483490.1\|SQJ14463.1\|981008_981320_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	7.39749e-65
LS483490.1\|SQJ14432.1\|977494_978403_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483490.1\|SQJ14410.1\|970276_970795_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|187800	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.13719e-46
LS483490.1\|SQJ14464.1\|981338_982049_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.53505e-119
LS483490.1\|SQJ14430.1\|976197_977244_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483490.1\|SQJ14407.1\|969239_970151_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.46323e-117
LS483490.1\|SQJ14401.1\|965167_966121_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483490.1\|SQJ14428.1\|974727_975021_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
LS483490.1\|SQJ14445.1\|980494_980818_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
LS483490.1\|SQJ14417.1\|971365_971869_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.31983e-50

>LS483490.1|SQJ14428.1|974727_975021_+|ssRNA-endonuclease
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>LS483490.1|SQJ14426.1|973807_974695_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPE
>LS483490.1|SQJ14423.1|973160_973811_+|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVVNDPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>LS483490.1|SQJ14420.1|971832_972423_+|CRISPR-associated-protein-Cse4
MAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>LS483490.1|SQJ14417.1|971365_971869_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEENVRQQKRKRNCYVTIAWPSILPCLAGC
>LS483490.1|SQJ14414.1|970791_971352_+|transposase
MSIVTKDDKATLLQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>LS483490.1|SQJ14410.1|970276_970795_+|CRISPR-associated-protein-CasA
MFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDRVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>LS483490.1|SQJ14407.1|969239_970151_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPETPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDAAIFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAR
>LS483490.1|SQJ14404.1|966564_969228_+|helicase
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFANSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEESCLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEHVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>LS483490.1|SQJ14401.1|965167_966121_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNIEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483490.1|SQJ14430.1|976197_977244_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483490.1|SQJ14432.1|977494_978403_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483490.1|SQJ14434.1|978412_979852_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQVDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELNERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LS483490.1|SQJ14436.1|979838_980444_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LS483490.1|SQJ14445.1|980494_980818_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LS483490.1|SQJ14463.1|981008_981320_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLVLLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LS483490.1|SQJ14464.1|981338_982049_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLADHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LS483490.1|SQJ14466.1|982048_982528_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LS483490.1|SQJ14468.1|982524_983574_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKYAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LS483490.1|SQJ14470.1|983554_984316_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
LS483490_2	2.1\|634136\|54\|LS483490\|PILER-CR	634136-634189	54	LS483490.1	634568-634621	0	1.0
LS483490_2	2.1\|634136\|54\|LS483490\|PILER-CR	634136-634189	54	LS483490.1	634676-634729	0	1.0
LS483490_2	2.2\|634244\|54\|LS483490\|PILER-CR	634244-634297	54	LS483490.1	634460-634513	0	1.0
LS483490_2	2.1\|634136\|54\|LS483490\|PILER-CR	634136-634189	54	LS483490.1	634460-634513	1	0.981
LS483490_2	2.2\|634244\|54\|LS483490\|PILER-CR	634244-634297	54	LS483490.1	634568-634621	1	0.981
LS483490_2	2.2\|634244\|54\|LS483490\|PILER-CR	634244-634297	54	LS483490.1	634676-634729	1	0.981
LS483490_2	2.2\|634244\|54\|LS483490\|PILER-CR	634244-634297	54	LS483490.1	634784-634837	1	0.981
LS483490_2	2.1\|634136\|54\|LS483490\|PILER-CR	634136-634189	54	LS483490.1	634784-634837	2	0.963

1. spacer 2.1|634136|54|LS483490|PILER-CR matches to position: 634568-634621, mismatch: 0, identity: 1.0

acccaaaagaaagcggcttatcggtcagtttcacttcttcataaaacccgcttc	CRISPR spacer
acccaaaagaaagcggcttatcggtcagtttcacttcttcataaaacccgcttc	Protospacer
******************************************************

2. spacer 2.1|634136|54|LS483490|PILER-CR matches to position: 634676-634729, mismatch: 0, identity: 1.0

acccaaaagaaagcggcttatcggtcagtttcacttcttcataaaacccgcttc	CRISPR spacer
acccaaaagaaagcggcttatcggtcagtttcacttcttcataaaacccgcttc	Protospacer
******************************************************

3. spacer 2.2|634244|54|LS483490|PILER-CR matches to position: 634460-634513, mismatch: 0, identity: 1.0

acccaaaagaaagcggcttatcggtcagtttcacctcttcataaaacccgcttc	CRISPR spacer
acccaaaagaaagcggcttatcggtcagtttcacctcttcataaaacccgcttc	Protospacer
******************************************************

4. spacer 2.1|634136|54|LS483490|PILER-CR matches to position: 634460-634513, mismatch: 1, identity: 0.981

acccaaaagaaagcggcttatcggtcagtttcacttcttcataaaacccgcttc	CRISPR spacer
acccaaaagaaagcggcttatcggtcagtttcacctcttcataaaacccgcttc	Protospacer
**********************************.*******************

5. spacer 2.2|634244|54|LS483490|PILER-CR matches to position: 634568-634621, mismatch: 1, identity: 0.981

acccaaaagaaagcggcttatcggtcagtttcacctcttcataaaacccgcttc	CRISPR spacer
acccaaaagaaagcggcttatcggtcagtttcacttcttcataaaacccgcttc	Protospacer
**********************************.*******************

6. spacer 2.2|634244|54|LS483490|PILER-CR matches to position: 634676-634729, mismatch: 1, identity: 0.981

acccaaaagaaagcggcttatcggtcagtttcacctcttcataaaacccgcttc	CRISPR spacer
acccaaaagaaagcggcttatcggtcagtttcacttcttcataaaacccgcttc	Protospacer
**********************************.*******************

7. spacer 2.2|634244|54|LS483490|PILER-CR matches to position: 634784-634837, mismatch: 1, identity: 0.981

acccaaaagaaagcggcttatcggtcagtttcacctcttcataaaacccgcttc	CRISPR spacer
acccaaaagaaagcggcttatcggtcagtttcacctcttcataaaatccgcttc	Protospacer
**********************************************.*******

8. spacer 2.1|634136|54|LS483490|PILER-CR matches to position: 634784-634837, mismatch: 2, identity: 0.963

acccaaaagaaagcggcttatcggtcagtttcacttcttcataaaacccgcttc	CRISPR spacer
acccaaaagaaagcggcttatcggtcagtttcacctcttcataaaatccgcttc	Protospacer
**********************************.***********.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483490_3	3.15\|958842\|31\|LS483490\|CRISPRCasFinder,CRT	958842-958872	31	EU545650	Acidianus filamentous virus 9, complete genome	21045-21075	6	0.806
LS483490_4	4.18\|975697\|31\|LS483490\|CRISPRCasFinder	975697-975727	31	NC_011758	Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence	357230-357260	6	0.806
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065458	Streptococcus phage IPP17, complete genome	22509-22540	7	0.781
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065495	Streptococcus phage IPP58, complete genome	22223-22254	7	0.781
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065462	Streptococcus phage IPP21, complete genome	24837-24868	7	0.781
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065454	Streptococcus phage IPP12, complete genome	23715-23746	7	0.781
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065471	Streptococcus phage IPP30, complete genome	25159-25190	7	0.781
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065463	Streptococcus phage IPP22, complete genome	23988-24019	7	0.781
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065470	Streptococcus phage IPP29, complete genome	24157-24188	7	0.781
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065469	Streptococcus phage IPP28, complete genome	22951-22982	7	0.781
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065499	Streptococcus phage IPP63, complete genome	22575-22606	7	0.781
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065494	Streptococcus phage IPP57, complete genome	22224-22255	7	0.781
LS483490_3	3.6\|958293\|32\|LS483490\|CRISPRCasFinder,CRT	958293-958324	32	KY065459	Streptococcus phage IPP18, complete genome	24211-24242	7	0.781
LS483490_4	4.2\|975208\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975208-975239	32	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	144853-144884	7	0.781
LS483490_4	4.2\|975208\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975208-975239	32	GU071097	Synechococcus phage S-SSM5, complete genome	12434-12465	7	0.781
LS483490_4	4.7\|975513\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975513-975544	32	NC_011758	Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence	357229-357260	7	0.781
LS483490_4	4.18\|975697\|31\|LS483490\|CRISPRCasFinder	975697-975727	31	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	61868-61898	7	0.774
LS483490_4	4.18\|975697\|31\|LS483490\|CRISPRCasFinder	975697-975727	31	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	763706-763736	7	0.774
LS483490_4	4.26\|975697\|32\|LS483490\|CRT	975697-975728	32	NC_011758	Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence	357229-357260	7	0.781
LS483490_3	3.3\|958110\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	958110-958141	32	NZ_KJ599675	Micrococcus sp. A7 plasmid pLMA7, complete sequence	73961-73992	8	0.75
LS483490_3	3.3\|958110\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	958110-958141	32	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	2984-3015	8	0.75
LS483490_3	3.3\|958110\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	958110-958141	32	NZ_KR152226	Micrococcus sp. MG-2010-D12 plasmid pJD12, complete sequence	69455-69486	8	0.75
LS483490_4	4.2\|975208\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975208-975239	32	GU071094	Synechococcus phage S-SM1, complete genome	12662-12693	8	0.75
LS483490_4	4.7\|975513\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975513-975544	32	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	61867-61898	8	0.75
LS483490_4	4.7\|975513\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975513-975544	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	763705-763736	8	0.75
LS483490_4	4.26\|975697\|32\|LS483490\|CRT	975697-975728	32	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	61867-61898	8	0.75
LS483490_4	4.26\|975697\|32\|LS483490\|CRT	975697-975728	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	763705-763736	8	0.75
LS483490_3	3.3\|958110\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	958110-958141	32	NZ_CP049358	Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence	137722-137753	9	0.719
LS483490_3	3.4\|958171\|32\|LS483490\|CRISPRCasFinder,CRT	958171-958202	32	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	247728-247759	9	0.719
LS483490_3	3.12\|958659\|32\|LS483490\|CRISPRCasFinder,CRT	958659-958690	32	NC_015187	Acidiphilium multivorum AIU301 plasmid pACMV2, complete sequence	54669-54700	9	0.719
LS483490_3	3.12\|958659\|32\|LS483490\|CRISPRCasFinder,CRT	958659-958690	32	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	339758-339789	9	0.719
LS483490_3	3.12\|958659\|32\|LS483490\|CRISPRCasFinder,CRT	958659-958690	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	321623-321654	9	0.719
LS483490_3	3.12\|958659\|32\|LS483490\|CRISPRCasFinder,CRT	958659-958690	32	NC_022976	Mycobacterium phage Nala, complete genome	69932-69963	9	0.719
LS483490_3	3.13\|958720\|32\|LS483490\|CRISPRCasFinder,CRT	958720-958751	32	NZ_CP043832	Bacillus sp. BS98 plasmid unnamed2	166919-166950	9	0.719
LS483490_3	3.14\|958781\|32\|LS483490\|CRISPRCasFinder,CRT	958781-958812	32	NZ_CP015993	Pseudomonas sp. TCU-HL1 plasmid pTCUH, complete sequence	3665-3696	9	0.719
LS483490_3	3.14\|958781\|32\|LS483490\|CRISPRCasFinder,CRT	958781-958812	32	NZ_CP015993	Pseudomonas sp. TCU-HL1 plasmid pTCUH, complete sequence	11154-11185	9	0.719
LS483490_4	4.5\|975391\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975391-975422	32	MH920638	Synechoccus phage S-B05, partial genome	13827-13858	9	0.719
LS483490_4	4.5\|975391\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975391-975422	32	MK799832	Synechococcus phage S-B05, complete genome	13827-13858	9	0.719
LS483490_4	4.6\|975452\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975452-975483	32	MN642089	Klebsiella phage N1M2, complete genome	225372-225403	9	0.719
LS483490_4	4.8\|975574\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975574-975605	32	MH920638	Synechoccus phage S-B05, partial genome	13827-13858	9	0.719
LS483490_4	4.8\|975574\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	975574-975605	32	MK799832	Synechococcus phage S-B05, complete genome	13827-13858	9	0.719
LS483490_4	4.12\|975824\|32\|LS483490\|PILER-CR	975824-975855	32	NZ_CP014797	Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence	61257-61288	9	0.719
LS483490_4	4.15\|976007\|32\|LS483490\|PILER-CR	976007-976038	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1513479-1513510	9	0.719
LS483490_4	4.20\|975818\|32\|LS483490\|CRISPRCasFinder,CRT	975818-975849	32	NZ_CP014797	Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence	61257-61288	9	0.719
LS483490_4	4.23\|976001\|32\|LS483490\|CRISPRCasFinder,CRT	976001-976032	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1513479-1513510	9	0.719
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065458	Streptococcus phage IPP17, complete genome	22506-22540	10	0.714
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065495	Streptococcus phage IPP58, complete genome	22220-22254	10	0.714
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065462	Streptococcus phage IPP21, complete genome	24834-24868	10	0.714
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065454	Streptococcus phage IPP12, complete genome	23712-23746	10	0.714
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065471	Streptococcus phage IPP30, complete genome	25156-25190	10	0.714
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065463	Streptococcus phage IPP22, complete genome	23985-24019	10	0.714
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065470	Streptococcus phage IPP29, complete genome	24154-24188	10	0.714
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065469	Streptococcus phage IPP28, complete genome	22948-22982	10	0.714
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065499	Streptococcus phage IPP63, complete genome	22572-22606	10	0.714
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065494	Streptococcus phage IPP57, complete genome	22221-22255	10	0.714
LS483490_3	3.17\|958293\|35\|LS483490\|PILER-CR	958293-958327	35	KY065459	Streptococcus phage IPP18, complete genome	24208-24242	10	0.714
LS483490_4	4.13\|975885\|32\|LS483490\|PILER-CR	975885-975916	32	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	498419-498450	10	0.688
LS483490_4	4.13\|975885\|32\|LS483490\|PILER-CR	975885-975916	32	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	1005747-1005778	10	0.688
LS483490_4	4.13\|975885\|32\|LS483490\|PILER-CR	975885-975916	32	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	1140642-1140673	10	0.688
LS483490_4	4.13\|975885\|32\|LS483490\|PILER-CR	975885-975916	32	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	1026062-1026093	10	0.688
LS483490_4	4.13\|975885\|32\|LS483490\|PILER-CR	975885-975916	32	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	942163-942194	10	0.688
LS483490_4	4.13\|975885\|32\|LS483490\|PILER-CR	975885-975916	32	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	1031998-1032029	10	0.688
LS483490_4	4.13\|975885\|32\|LS483490\|PILER-CR	975885-975916	32	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	1026061-1026092	10	0.688
LS483490_4	4.13\|975885\|32\|LS483490\|PILER-CR	975885-975916	32	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	1140642-1140673	10	0.688
LS483490_4	4.15\|976007\|32\|LS483490\|PILER-CR	976007-976038	32	NZ_CP017565	Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence	312580-312611	10	0.688
LS483490_4	4.21\|975879\|32\|LS483490\|CRISPRCasFinder,CRT	975879-975910	32	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	498419-498450	10	0.688
LS483490_4	4.21\|975879\|32\|LS483490\|CRISPRCasFinder,CRT	975879-975910	32	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	1005747-1005778	10	0.688
LS483490_4	4.21\|975879\|32\|LS483490\|CRISPRCasFinder,CRT	975879-975910	32	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	1140642-1140673	10	0.688
LS483490_4	4.21\|975879\|32\|LS483490\|CRISPRCasFinder,CRT	975879-975910	32	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	1026062-1026093	10	0.688
LS483490_4	4.21\|975879\|32\|LS483490\|CRISPRCasFinder,CRT	975879-975910	32	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	942163-942194	10	0.688
LS483490_4	4.21\|975879\|32\|LS483490\|CRISPRCasFinder,CRT	975879-975910	32	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	1031998-1032029	10	0.688
LS483490_4	4.21\|975879\|32\|LS483490\|CRISPRCasFinder,CRT	975879-975910	32	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	1026061-1026092	10	0.688
LS483490_4	4.21\|975879\|32\|LS483490\|CRISPRCasFinder,CRT	975879-975910	32	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	1140642-1140673	10	0.688
LS483490_4	4.23\|976001\|32\|LS483490\|CRISPRCasFinder,CRT	976001-976032	32	NZ_CP017565	Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence	312580-312611	10	0.688
LS483490_3	3.3\|958110\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	958110-958141	32	NC_004996	Streptococcus phage SM1, complete genome	29673-29704	11	0.656
LS483490_3	3.3\|958110\|32\|LS483490\|PILER-CR,CRISPRCasFinder,CRT	958110-958141	32	AY007505	Streptococcus mitis phage SM1,complete genome	29673-29704	11	0.656

1. spacer 3.15|958842|31|LS483490|CRISPRCasFinder,CRT matches to EU545650 (Acidianus filamentous virus 9, complete genome) position: , mismatch: 6, identity: 0.806

--ccgtagcttggttgtggactcatcctaacgg	CRISPR spacer
aaccggaa--tggttgggtactcatcctaacgg	Protospacer
  *** *.  ****** * **************

2. spacer 4.18|975697|31|LS483490|CRISPRCasFinder matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 6, identity: 0.806

-gtgccgaggcgttcggcggccagacgtcaca	CRISPR spacer
ggcgcc-tggcgttcggcggacggacgtcacg	Protospacer
 *.***  ************ *.********.

3. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065458 (Streptococcus phage IPP17, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

4. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065495 (Streptococcus phage IPP58, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

5. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065462 (Streptococcus phage IPP21, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

6. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065454 (Streptococcus phage IPP12, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

7. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065471 (Streptococcus phage IPP30, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

8. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065463 (Streptococcus phage IPP22, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

9. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065470 (Streptococcus phage IPP29, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

10. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065469 (Streptococcus phage IPP28, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

11. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065499 (Streptococcus phage IPP63, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

12. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065494 (Streptococcus phage IPP57, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

13. spacer 3.6|958293|32|LS483490|CRISPRCasFinder,CRT matches to KY065459 (Streptococcus phage IPP18, complete genome) position: , mismatch: 7, identity: 0.781

gggcttctgcagtagctgttccaatagttggc	CRISPR spacer
cagcaattgcaatagctgttccaataattggc	Protospacer
 .**  .****.**************.*****

14. spacer 4.2|975208|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcagatcgcgctggcggctgttgagaac-----	CRISPR spacer
gccgccagaccgcgctggcggct-----gaactcgat	Protospacer
****.****.*************     ****

15. spacer 4.2|975208|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to GU071097 (Synechococcus phage S-SSM5, complete genome) position: , mismatch: 7, identity: 0.781

gccgt-cagatcgcgctggcggctgttgagaac	CRISPR spacer
-tcgtgcagatggcgttggcggctgttgaggcg	Protospacer
 .*** ***** ***.**************.

16. spacer 4.7|975513|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 7, identity: 0.781

-gtgccgaggcgttcggcggccagacgtcacaa	CRISPR spacer
ggcgcc-tggcgttcggcggacggacgtcacgc	Protospacer
 *.***  ************ *.********.

17. spacer 4.18|975697|31|LS483490|CRISPRCasFinder matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 7, identity: 0.774

gtgccgaggcgttcggcggccagacgtcaca	CRISPR spacer
gaggcgagccgttcggcggccagtcgtcggc	Protospacer
* * **** ************** ****.

18. spacer 4.18|975697|31|LS483490|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 7, identity: 0.774

gtgccgaggcgttcggcggccagacgtcaca	CRISPR spacer
atgccgaggcgttcggtcgccagatgcgaaa	Protospacer
.***************. ******.*. * *

19. spacer 4.26|975697|32|LS483490|CRT matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 7, identity: 0.781

-gtgccgaggcgttcggcggccagacgtcacaa	CRISPR spacer
ggcgcc-tggcgttcggcggacggacgtcacgc	Protospacer
 *.***  ************ *.********.

20. spacer 3.3|958110|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KJ599675 (Micrococcus sp. A7 plasmid pLMA7, complete sequence) position: , mismatch: 8, identity: 0.75

cgtgtcacaggcgtgaacgaaatcaagcgtct	CRISPR spacer
gcgggcaagggcgtcaacgacatcaagcgtct	Protospacer
   * ** .***** ***** ***********

21. spacer 3.3|958110|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 8, identity: 0.75

cgtgtcacaggcgtgaacgaaatcaagcgtct	CRISPR spacer
gcgggcaagggcgtcaacgacatcaagcgtct	Protospacer
   * ** .***** ***** ***********

22. spacer 3.3|958110|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KR152226 (Micrococcus sp. MG-2010-D12 plasmid pJD12, complete sequence) position: , mismatch: 8, identity: 0.75

cgtgtcacaggcgtgaacgaaatcaagcgtct	CRISPR spacer
gcgggcaagggcgtcaacgacatcaagcgtct	Protospacer
   * ** .***** ***** ***********

23. spacer 4.2|975208|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to GU071094 (Synechococcus phage S-SM1, complete genome) position: , mismatch: 8, identity: 0.75

gccgt-cagatcgcgctggcggctgttgagaac	CRISPR spacer
-tcgtgcagatggcactggcggctgttgaatcg	Protospacer
 .*** ***** **.**************.

24. spacer 4.7|975513|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 8, identity: 0.75

gtgccgaggcgttcggcggccagacgtcacaa	CRISPR spacer
gaggcgagccgttcggcggccagtcgtcggct	Protospacer
* * **** ************** ****.

25. spacer 4.7|975513|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 8, identity: 0.75

gtgccgaggcgttcggcggccagacgtcacaa	CRISPR spacer
atgccgaggcgttcggtcgccagatgcgaaac	Protospacer
.***************. ******.*. * *

26. spacer 4.26|975697|32|LS483490|CRT matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 8, identity: 0.75

gtgccgaggcgttcggcggccagacgtcacaa	CRISPR spacer
gaggcgagccgttcggcggccagtcgtcggct	Protospacer
* * **** ************** ****.

27. spacer 4.26|975697|32|LS483490|CRT matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 8, identity: 0.75

gtgccgaggcgttcggcggccagacgtcacaa	CRISPR spacer
atgccgaggcgttcggtcgccagatgcgaaac	Protospacer
.***************. ******.*. * *

28. spacer 3.3|958110|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049358 (Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cgtgtcacaggcgtgaacgaaatcaagcgtct	CRISPR spacer
ctgttcacgggcctgaacgaaatcaagggcgg	Protospacer
*   ****.*** ************** *.

29. spacer 3.4|958171|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgccgcgccgacgtggagcgtaaataattt	CRISPR spacer
ggcgccgcgccgacggggagggtgagatagcc	Protospacer
*************** **** **.*.  * ..

30. spacer 3.12|958659|32|LS483490|CRISPRCasFinder,CRT matches to NC_015187 (Acidiphilium multivorum AIU301 plasmid pACMV2, complete sequence) position: , mismatch: 9, identity: 0.719

cgcaggtatcacctccgccatggggatcgcgc	CRISPR spacer
cgtgatgatccgctccgccatggggatcgccg	Protospacer
**...  ***  ******************

31. spacer 3.12|958659|32|LS483490|CRISPRCasFinder,CRT matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 9, identity: 0.719

cgcaggtatcacctccgccatggggatcgcgc	CRISPR spacer
cctcaccaacacctgcgccatggggatggcgc	Protospacer
* . . .* ***** ************ ****

32. spacer 3.12|958659|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

cgcaggtatcacctccgccatggggatcgcgc	CRISPR spacer
ccggaccagcacctccggcatcgggatcgcgc	Protospacer
*  .. .* ******** *** **********

33. spacer 3.12|958659|32|LS483490|CRISPRCasFinder,CRT matches to NC_022976 (Mycobacterium phage Nala, complete genome) position: , mismatch: 9, identity: 0.719

cgcaggtatcacctccgccatggggatcgcgc	CRISPR spacer
tctccgtatcatctccgccatggtgatcttgc	Protospacer
. .  ******.*********** **** .**

34. spacer 3.13|958720|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP043832 (Bacillus sp. BS98 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

gcctctaccacggagcaaaaatgataagcgca	CRISPR spacer
aataaaatcacggagccaaaatgataagctca	Protospacer
. .   *.******** ************ **

35. spacer 3.14|958781|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP015993 (Pseudomonas sp. TCU-HL1 plasmid pTCUH, complete sequence) position: , mismatch: 9, identity: 0.719

gatgatcgtttttttcgttacgtcgcgcaaat	CRISPR spacer
gcttctcggttttttcgttacgttgcgcttta	Protospacer
* *  *** **************.****

36. spacer 3.14|958781|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP015993 (Pseudomonas sp. TCU-HL1 plasmid pTCUH, complete sequence) position: , mismatch: 9, identity: 0.719

gatgatcgtttttttcgttacgtcgcgcaaat	CRISPR spacer
gcttctcggttttttcgttacgttgcgcttta	Protospacer
* *  *** **************.****

37. spacer 4.5|975391|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to MH920638 (Synechoccus phage S-B05, partial genome) position: , mismatch: 9, identity: 0.719

cgcaccgacgataacatctggttcgcaaaaat	CRISPR spacer
tccacctacgatatcatctggttcggagattg	Protospacer
. **** ****** *********** *.*

38. spacer 4.5|975391|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to MK799832 (Synechococcus phage S-B05, complete genome) position: , mismatch: 9, identity: 0.719

cgcaccgacgataacatctggttcgcaaaaat	CRISPR spacer
tccacctacgatatcatctggttcggagattg	Protospacer
. **** ****** *********** *.*

39. spacer 4.6|975452|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to MN642089 (Klebsiella phage N1M2, complete genome) position: , mismatch: 9, identity: 0.719

-----ccgctaaaaaaagaaacgcccaataccaataa	CRISPR spacer
ggatacc-----aaaaagaaatgaccaataccaatcc	Protospacer
     **     *********.* ***********

40. spacer 4.8|975574|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to MH920638 (Synechoccus phage S-B05, partial genome) position: , mismatch: 9, identity: 0.719

cgcaccgacgataacatctggttcgcaaaaat	CRISPR spacer
tccacctacgatatcatctggttcggagattg	Protospacer
. **** ****** *********** *.*

41. spacer 4.8|975574|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to MK799832 (Synechococcus phage S-B05, complete genome) position: , mismatch: 9, identity: 0.719

cgcaccgacgataacatctggttcgcaaaaat	CRISPR spacer
tccacctacgatatcatctggttcggagattg	Protospacer
. **** ****** *********** *.*

42. spacer 4.12|975824|32|LS483490|PILER-CR matches to NZ_CP014797 (Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence) position: , mismatch: 9, identity: 0.719

gatttattcgagcgggtgcaggacaaccacga	CRISPR spacer
gtcgagatcgcgcgggtgcaggacaacgacgc	Protospacer
* .  . *** **************** ***

43. spacer 4.15|976007|32|LS483490|PILER-CR matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.719

agtgcatacgccagacggctggaggtgcgaat	CRISPR spacer
aaggtccgcgcctgacggctggaggtgccaag	Protospacer
*. *. ..**** *************** **

44. spacer 4.20|975818|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP014797 (Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence) position: , mismatch: 9, identity: 0.719

gatttattcgagcgggtgcaggacaaccacga	CRISPR spacer
gtcgagatcgcgcgggtgcaggacaacgacgc	Protospacer
* .  . *** **************** ***

45. spacer 4.23|976001|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.719

agtgcatacgccagacggctggaggtgcgaat	CRISPR spacer
aaggtccgcgcctgacggctggaggtgccaag	Protospacer
*. *. ..**** *************** **

46. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065458 (Streptococcus phage IPP17, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

47. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065495 (Streptococcus phage IPP58, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

48. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065462 (Streptococcus phage IPP21, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

49. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065454 (Streptococcus phage IPP12, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

50. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065471 (Streptococcus phage IPP30, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

51. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065463 (Streptococcus phage IPP22, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

52. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065470 (Streptococcus phage IPP29, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

53. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065469 (Streptococcus phage IPP28, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

54. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065499 (Streptococcus phage IPP63, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

55. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065494 (Streptococcus phage IPP57, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

56. spacer 3.17|958293|35|LS483490|PILER-CR matches to KY065459 (Streptococcus phage IPP18, complete genome) position: , mismatch: 10, identity: 0.714

gggcttctgcagtagctgttccaatagttggcgtg	CRISPR spacer
cagcaattgcaatagctgttccaataattggcaat	Protospacer
 .**  .****.**************.*****.

57. spacer 4.13|975885|32|LS483490|PILER-CR matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

58. spacer 4.13|975885|32|LS483490|PILER-CR matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

59. spacer 4.13|975885|32|LS483490|PILER-CR matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

60. spacer 4.13|975885|32|LS483490|PILER-CR matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

61. spacer 4.13|975885|32|LS483490|PILER-CR matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

62. spacer 4.13|975885|32|LS483490|PILER-CR matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

63. spacer 4.13|975885|32|LS483490|PILER-CR matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

64. spacer 4.13|975885|32|LS483490|PILER-CR matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

65. spacer 4.15|976007|32|LS483490|PILER-CR matches to NZ_CP017565 (Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence) position: , mismatch: 10, identity: 0.688

agtgcatacgccagacggctggaggtgcgaat	CRISPR spacer
ggtgcataggccagacggctggcggcagatgg	Protospacer
.******* ************* **.. . .

66. spacer 4.21|975879|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

67. spacer 4.21|975879|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

68. spacer 4.21|975879|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

69. spacer 4.21|975879|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

70. spacer 4.21|975879|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

71. spacer 4.21|975879|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

72. spacer 4.21|975879|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

73. spacer 4.21|975879|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 10, identity: 0.688

tgaagttaatccctgcgggaacggttgcgcgt	CRISPR spacer
ccggcaaaatccctgcgggaccggttgggcgc	Protospacer
. ..   ************* ****** ***.

74. spacer 4.23|976001|32|LS483490|CRISPRCasFinder,CRT matches to NZ_CP017565 (Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence) position: , mismatch: 10, identity: 0.688

agtgcatacgccagacggctggaggtgcgaat	CRISPR spacer
ggtgcataggccagacggctggcggcagatgg	Protospacer
.******* ************* **.. . .

75. spacer 3.3|958110|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to NC_004996 (Streptococcus phage SM1, complete genome) position: , mismatch: 11, identity: 0.656

cgtgtcacaggcgtgaacgaaatcaagcgtct	CRISPR spacer
gacagcactggcttgaacgaaatcaagcagaa	Protospacer
 ... *** *** ***************.

76. spacer 3.3|958110|32|LS483490|PILER-CR,CRISPRCasFinder,CRT matches to AY007505 (Streptococcus mitis phage SM1,complete genome) position: , mismatch: 11, identity: 0.656

cgtgtcacaggcgtgaacgaaatcaagcgtct	CRISPR spacer
gacagcactggcttgaacgaaatcaagcagaa	Protospacer
 ... *** *** ***************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

308919 : 314771

Dickeya_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ09250.1\|308919_309585_-	membrane protein	A0A2I7SAW6	Vibrio_phage	1.6e-57	54.9
SQJ09254.1\|309664_310000_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusA	A0A140XB86	Dickeya_phage	8.4e-10	83.3
SQJ09266.1\|310023_311667_-	methyl-accepting chemotaxis citrate transducer	A0A2H4J162	uncultured_Caudovirales_phage	2.5e-14	29.6
SQJ09278.1\|311866_312952_-	heavy metal-transporting ATPase	E4ZFI9	Streptococcus_phage	1.4e-69	42.2
SQJ09280.1\|312951_314064_-	heavy metal-transporting ATPase	E4ZFI9	Streptococcus_phage	6.8e-32	28.5
SQJ09282.1\|314144_314771_-	putative enzyme yhhN	A0A140XAH6	Dickeya_phage	3.8e-32	64.6

DBSCAN-SWA_2

1258463 : 1264905

Lake_Baikal_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ16670.1\|1258463_1259552_+	L-cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.5e-31	31.7
SQJ16672.1\|1259706_1260093_+	NifU-like protein	A0A218MKD1	uncultured_virus	2.4e-53	78.9
SQJ16769.1\|1260121_1260259_+	Iron binding protein IscA for iron-sulfur cluster assembly	A0A2H4N7N5	Lake_Baikal_phage	7.3e-05	51.2
SQJ16770.1\|1260239_1260446_+	Iron binding protein IscA for iron-sulfur cluster assembly	A0A2H4N7M3	Lake_Baikal_phage	2.6e-06	40.4
SQJ16797.1\|1260641_1261157_+	chaperone protein HscB	NA	NA	NA	NA
SQJ16799.1\|1261324_1263019_+	chaperone protein HscA	F2Y2E1	Organic_Lake_phycodnavirus	3.0e-95	39.3
SQJ16801.1\|1263020_1263356_+	ferredoxin	NA	NA	NA	NA
SQJ16803.1\|1263367_1263568_+	FeS assembly protein IscX	NA	NA	NA	NA
SQJ16805.1\|1263621_1264905_+	peptidase B	Q6GYZ8	Mycoplasma_phage	1.2e-35	38.2

DBSCAN-SWA_3

1670358 : 1679529

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ18521.1\|1670358_1671306_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
SQJ18553.1\|1671289_1672021_+	putative permease transmembrane component	NA	NA	NA	NA
SQJ18670.1\|1672001_1672109_-	membrane protein	NA	NA	NA	NA
SQJ18674.1\|1672168_1672900_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
SQJ18678.1\|1673122_1674808_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
SQJ18682.1\|1674804_1675524_+	two-component system response regulator	NA	NA	NA	NA
SQJ18686.1\|1675570_1676038_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
SQJ18690.1\|1676094_1676625_-	lipoprotein	NA	NA	NA	NA
SQJ18694.1\|1676796_1677255_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
SQJ18698.1\|1677495_1679529_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.4e-54	27.6

DBSCAN-SWA_4

1970892 : 2013023

Moraxella_phage(30.0%)

integrase,protease,transposase

attL 1964357:1964371|attR 2004244:2004258

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1964357:1964371	attL	NA	NA	NA	NA
SQJ21241.1\|1970892_1971162_-\|integrase	phage integrase protein	A0A2H4IYC8	uncultured_Caudovirales_phage	1.9e-17	53.5
SQJ21243.1\|1971743_1973186_+	leucine-rich repeat protein	Q9MBL9	Phage_Gifsy-2	1.6e-17	67.2
SQJ21244.1\|1973131_1973929_+	leucine-rich repeat protein	NA	NA	NA	NA
SQJ21246.1\|1973958_1974258_+\|transposase	transposase, Mutator family protein	A0A218MNI5	uncultured_virus	2.9e-14	57.1
SQJ21248.1\|1974220_1974559_+\|transposase	transposase	NA	NA	NA	NA
SQJ21249.1\|1975650_1976070_+	acetyltransferase	NA	NA	NA	NA
SQJ21251.1\|1976456_1976933_-	Uncharacterised protein	NA	NA	NA	NA
SQJ21252.1\|1977261_1977657_-	protein ycgX	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
SQJ21254.1\|1978341_1979064_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
SQJ21256.1\|1979348_1979513_+	membrane protein	NA	NA	NA	NA
SQJ21258.1\|1979738_1980386_+	Serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	1.4e-58	51.4
SQJ21260.1\|1980404_1980596_-	putative secreted protein	NA	NA	NA	NA
SQJ21262.1\|1980706_1980946_-	conserved domain protein	NA	NA	NA	NA
SQJ21264.1\|1981060_1981447_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
SQJ21265.1\|1981443_1982604_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
SQJ21266.1\|1982579_1985213_-	mce-related protein	NA	NA	NA	NA
SQJ21267.1\|1985181_1986465_-	Paraquat-inducible protein A	NA	NA	NA	NA
SQJ21268.1\|1986521_1987091_+	GAF domain-containing protein	NA	NA	NA	NA
SQJ21269.1\|1987188_1987875_+	ProP effector	NA	NA	NA	NA
SQJ21270.1\|1987894_1988893_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	2.3e-31	29.4
SQJ21271.1\|1989004_1989943_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	2.9e-36	41.1
SQJ21272.1\|1990135_1991017_+	heat shock protein	NA	NA	NA	NA
SQJ21273.1\|1991064_1992438_-	export protein	NA	NA	NA	NA
SQJ21274.1\|1992502_1992610_+	Uncharacterised protein	NA	NA	NA	NA
SQJ21276.1\|1992613_1993405_+	transcriptional regulator KdgR	NA	NA	NA	NA
SQJ21278.1\|1994013_1994157_+	Putative inner membrane protein	NA	NA	NA	NA
SQJ21279.1\|1994227_1994515_+	putative exported protein	NA	NA	NA	NA
SQJ21280.1\|1995748_1996186_+	penicillin-binding protein	NA	NA	NA	NA
SQJ21281.1\|1996142_1997495_+	penicillin-binding protein	NA	NA	NA	NA
SQJ21282.1\|1997560_1998370_+	23S rRNA methyltransferase A	NA	NA	NA	NA
SQJ21283.1\|1998366_1998933_-	membrane protein YebN	NA	NA	NA	NA
SQJ21284.1\|1999342_1999801_-	membrane protein	NA	NA	NA	NA
SQJ21285.1\|1999858_2000710_-	PTS mannose transporter subunit IID	NA	NA	NA	NA
SQJ21286.1\|2000722_2001523_-	phosphotransferase enzyme II, C component	NA	NA	NA	NA
SQJ21287.1\|2001575_2002544_-	PTS system mannose-specific transporter subunit IIAB	NA	NA	NA	NA
SQJ21288.1\|2003464_2004577_+	Magnesium and cobalt efflux protein CorC	A0A0R6PEZ3	Moraxella_phage	2.6e-07	39.2
2004244:2004258	attR	NA	NA	NA	NA
SQJ21289.1\|2004598_2006200_-	cyclic diguanylate phosphodiesterase (EAL) domain protein	NA	NA	NA	NA
SQJ21290.1\|2006337_2007702_-	L-serine ammonia-lyase	NA	NA	NA	NA
SQJ21291.1\|2007965_2008544_-	putative nudix hydrolase YeaB	NA	NA	NA	NA
SQJ21292.1\|2008547_2009912_-	para-aminobenzoate synthase component I	A0A0B5J984	Pandoravirus	3.3e-44	35.0
SQJ21293.1\|2009992_2010172_+	conserved domain protein	NA	NA	NA	NA
SQJ21294.1\|2010177_2010522_-	Putative translation initiation inhibitor YoaB	NA	NA	NA	NA
SQJ21334.1\|2010809_2011202_+	ATP-dependent helicase	NA	NA	NA	NA
SQJ21337.1\|2012069_2012576_+	ATP-dependent helicase	A0A127AW80	Bacillus_phage	1.9e-34	44.6
SQJ21340.1\|2012633_2013023_+\|protease	metal-dependent protease-like protein, putative molecular chaperone	NA	NA	NA	NA

DBSCAN-SWA_5

2373069 : 2382741

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ22613.1\|2373069_2374284_-	starvation sensing protein RspA	Q6A202	Oenococcus_phage	2.0e-45	28.7
SQJ22616.1\|2374405_2374741_-	UPF0060 membrane protein CKO_01576	A0A218MNG8	uncultured_virus	1.3e-23	52.4
SQJ22618.1\|2374884_2375226_+	putative secreted protein	NA	NA	NA	NA
SQJ22620.1\|2375261_2375822_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
SQJ22622.1\|2375862_2376582_-	lipoprotein	NA	NA	NA	NA
SQJ22624.1\|2376679_2376985_+	outer membrane protein	NA	NA	NA	NA
SQJ22626.1\|2377141_2379580_+	dimethyl sulfoxide reductase, subunit A1	A0A077SK27	Escherichia_phage	7.3e-220	49.7
SQJ22628.1\|2379678_2382114_+	dimethyl sulfoxide reductase subunit	A0A077SK27	Escherichia_phage	1.3e-205	48.1
SQJ22630.1\|2382124_2382406_+	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	3.5e-25	57.9
SQJ22632.1\|2382372_2382741_+	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	6.5e-40	60.2

DBSCAN-SWA_6

2528503 : 2538316

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ23667.1\|2528503_2529607_+	short chain acyl-CoA synthetase	A0A2H4PQM9	Staphylococcus_phage	6.4e-06	23.9
SQJ23668.1\|2529611_2530145_+	short chain acyl-CoA synthetase	A0A1V0SBX8	Catovirus	1.6e-10	44.2
SQJ23669.1\|2530289_2531171_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	3.9e-75	49.6
SQJ23670.1\|2531193_2531421_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	9.6e-10	84.4
SQJ23671.1\|2531407_2531845_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	2.3e-07	39.1
SQJ23672.1\|2531922_2532393_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	6.2e-19	44.9
SQJ23673.1\|2532358_2532568_-	phosphoenolpyruvate synthase	NA	NA	NA	NA
SQJ23674.1\|2532903_2533191_+	PEP synthetase regulatory protein	NA	NA	NA	NA
SQJ23675.1\|2533190_2533736_+	PEP synthetase regulatory protein	NA	NA	NA	NA
SQJ23676.1\|2533891_2534938_+	3-deoxy-D-arabinoheptulosonate-7-phosphate synthase	S4W5F1	Pandoravirus	9.7e-81	47.6
SQJ23677.1\|2535094_2535286_+	Hemin uptake protein	NA	NA	NA	NA
SQJ23678.1\|2535320_2535893_-	Selenoprotein O and cysteine-containing	NA	NA	NA	NA
SQJ23679.1\|2535853_2536195_-	Selenoprotein O and cysteine-containing	NA	NA	NA	NA
SQJ23680.1\|2536163_2536763_-	Selenoprotein O and cysteine-containing	NA	NA	NA	NA
SQJ23681.1\|2536824_2537538_-	cyclic di-GMP regulator CdgR	NA	NA	NA	NA
SQJ23682.1\|2537851_2538316_-	lipoprotein	A0A1V0DZX6	Clostridioides_phage	2.0e-14	39.4

DBSCAN-SWA_7

2778073 : 2803686

Burkholderia_phage(45.83%)

head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ24849.1\|2778073_2778631_+	virulence protein	Q9MBM0	Phage_Gifsy-2	5.4e-38	68.1
SQJ24851.1\|2778600_2778714_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24852.1\|2779170_2779470_-\|tail	bacteriophage tail protein	A0A0K1YAB6	Cronobacter_phage	4.1e-16	42.6
SQJ24853.1\|2779702_2780500_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24854.1\|2780510_2781005_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24855.1\|2781054_2781615_-	Uncharacterised protein	Q6IWQ6	Burkholderia_phage	4.3e-19	41.2
SQJ24856.1\|2781611_2782295_-	Protein of uncharacterised function (DUF2612)	Q6IWQ4	Burkholderia_phage	1.4e-43	42.2
SQJ24857.1\|2782291_2783413_-	bacteriophage protein	Q6IWQ3	Burkholderia_phage	8.9e-64	46.2
SQJ24858.1\|2783369_2783489_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24860.1\|2783475_2783826_-	Uncharacterised protein	Q6IWQ2	Burkholderia_phage	8.7e-10	34.5
SQJ24861.1\|2783829_2784486_-	bacteriophage protein	Q6IWQ1	Burkholderia_phage	2.5e-42	50.6
SQJ24863.1\|2784478_2785303_-	Uncharacterised protein	Q6IWQ0	Burkholderia_phage	6.8e-53	44.8
SQJ24865.1\|2785295_2785616_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24866.1\|2785615_2786158_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24867.1\|2786157_2786967_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24869.1\|2786935_2787238_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24871.1\|2787550_2787922_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24872.1\|2787966_2788518_-	Uncharacterised protein	Q6IWV4	Burkholderia_phage	5.4e-30	56.2
SQJ24874.1\|2788563_2788962_-	Uncharacterised protein	Q6IWV3	Burkholderia_phage	7.1e-32	51.2
SQJ24876.1\|2788971_2790519_-	Protein of uncharacterised function (DUF3383)	A1Z015	Burkholderia_virus	1.3e-97	42.0
SQJ24878.1\|2790521_2791061_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24879.1\|2791053_2791422_-	Uncharacterised protein	A0A0F6YPT0	Pseudomonas_phage	8.3e-19	36.1
SQJ24881.1\|2791418_2791895_-	Uncharacterised protein	NA	NA	NA	NA
SQJ24882.1\|2791894_2792347_-	bacteriophage protein	A0A0U2CI04	Pseudomonas_phage	3.0e-26	45.5
SQJ24884.1\|2792349_2792727_-	Uncharacterised protein	Q6IWU7	Burkholderia_phage	2.4e-13	39.6
SQJ24886.1\|2792736_2793849_-	Uncharacterized protein conserved in bacteria	I6ZXX2	Escherichia_phage	6.7e-88	47.2
SQJ24887.1\|2793860_2794355_-	Uncharacterised protein	Q6IWU5	Burkholderia_phage	1.5e-10	32.1
SQJ24889.1\|2794354_2795542_-	Uncharacterized protein conserved in bacteria	A0A2H5BG39	Pseudoalteromonas_phage	2.5e-48	42.7
SQJ25027.1\|2795538_2796330_-\|head	phage head morphogenesis protein, SPP1 gp7 family	Q6IWU3	Burkholderia_phage	1.4e-50	40.0
SQJ25028.1\|2796295_2797861_-	Phage-associated protein	A0A2H4P6S9	Pseudomonas_phage	2.1e-111	49.6
SQJ25030.1\|2797860_2799495_-	Transposase and inactivated derivatives	H9C191	Pectobacterium_phage	2.2e-236	70.6
SQJ25032.1\|2799494_2799881_-	Uncharacterised protein	C7U0V7	Enterobacteria_phage	1.8e-08	32.8
SQJ25039.1\|2799846_2800548_-	ParB-like nuclease domain	A0A1J0ME72	Mycobacterium_phage	2.2e-20	30.4
SQJ25041.1\|2800611_2801814_-	Uncharacterised protein	A0A2P1JQE9	Mycobacterium_phage	4.2e-35	28.9
SQJ25042.1\|2801943_2802138_+	Uncharacterised protein	NA	NA	NA	NA
SQJ25044.1\|2802176_2802542_+	Uncharacterised protein	NA	NA	NA	NA
SQJ25045.1\|2802889_2803084_-	Uncharacterised protein	NA	NA	NA	NA
SQJ25046.1\|2803094_2803286_-	Uncharacterised protein	NA	NA	NA	NA
SQJ25048.1\|2803296_2803686_-	Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK precursor	A0A060DAL8	Salmonella_phage	7.8e-52	77.2

DBSCAN-SWA_8

2810130 : 2825955

Salmonella_phage(35.71%)

integrase

attL 2817429:2817442|attR 2829901:2829914

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ25065.1\|2810130_2810415_+	DNA breaking-rejoining protein	K7PGY4	Enterobacteria_phage	2.6e-12	63.3
SQJ25067.1\|2810611_2811457_+	Uncharacterised protein	I6XKU1	Burkholderia_virus	3.4e-52	35.3
SQJ25077.1\|2811607_2814538_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	74.6
SQJ25079.1\|2814549_2815530_+	Gifsy-2 prophage RecT	H6WRX0	Salmonella_phage	7.2e-102	63.9
SQJ25085.1\|2815697_2816042_+	Iron-sulfur cluster regulator IscR	NA	NA	NA	NA
SQJ25114.1\|2816038_2816347_+	Uncharacterised protein	A0A222YXX1	Escherichia_phage	1.4e-32	69.7
SQJ25218.1\|2816343_2816766_+	Eae protein	A0A0N6WGF1	Salmonella_phage	2.6e-40	73.1
SQJ25219.1\|2816762_2817020_+	Uncharacterised protein	NA	NA	NA	NA
SQJ25220.1\|2817016_2817352_+	Uncharacterised protein	A0A077SLK5	Escherichia_phage	2.1e-13	62.3
2817429:2817442	attL	NA	NA	NA	NA
SQJ25221.1\|2817898_2818615_+	prophage protein	A0A0M4RCP6	Salmonella_phage	1.4e-86	65.8
SQJ25222.1\|2818629_2819244_+	hypothetical bacteriophage protein	A0A075B8H2	Enterobacteria_phage	1.7e-32	85.5
SQJ25223.1\|2819231_2819417_+	Protein of uncharacterised function (DUF1187)	A0A0U2QL97	Escherichia_phage	4.4e-13	62.3
SQJ25224.1\|2819416_2819674_+	putative DNA methyl transferase	NA	NA	NA	NA
SQJ25225.1\|2819670_2821548_+	methyltransferase	H9C171	Pectobacterium_phage	6.0e-190	53.2
SQJ25226.1\|2821544_2821907_+	Uncharacterised protein	NA	NA	NA	NA
SQJ25227.1\|2821987_2822212_+	Uncharacterised protein	NA	NA	NA	NA
SQJ25245.1\|2822171_2823227_+\|integrase	site-specific recombinase, phage integrase family protein	A0A192Y7M7	Salmonella_phage	1.7e-85	50.5
SQJ25246.1\|2823249_2824134_+\|integrase	prophage lambda integrase (Int(lambda))	H9C178	Pectobacterium_phage	8.6e-62	40.4
SQJ25247.1\|2824223_2824511_+	Uncharacterised protein	NA	NA	NA	NA
SQJ25248.1\|2825430_2825955_+	Putative TEGT family carrier/transport protein	A0A2H4JFM9	uncultured_Caudovirales_phage	5.1e-38	53.2
2829901:2829914	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2906024 : 2917045

Escherichia_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ25358.1\|2906024_2906642_-	anaerobic dimethyl sulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.3e-76	59.6
SQJ25359.1\|2906652_2906886_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	9.2e-16	60.9
SQJ25360.1\|2906830_2907130_-	anaerobic dimethyl sulfoxide reductase subunit A	NA	NA	NA	NA
SQJ25361.1\|2907084_2909097_-	anaerobic dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.4e-160	47.4
SQJ25362.1\|2909335_2910628_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.6e-95	44.5
SQJ25363.1\|2910886_2912110_-	Holliday junction DNA helicase	G3MBE0	Bacillus_virus	4.8e-71	39.9
SQJ25364.1\|2912238_2912850_-	outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
SQJ25365.1\|2912992_2917045_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.9e-88	49.5

DBSCAN-SWA_10

3335344 : 3394488

Bacillus_phage(20.0%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ25840.1\|3335344_3336262_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
SQJ25841.1\|3336258_3336711_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
SQJ25842.1\|3336711_3337128_-	copper efflux regulator	NA	NA	NA	NA
SQJ25843.1\|3337237_3339739_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	5.1e-112	37.2
SQJ25844.1\|3339892_3340468_+	Secreted protein	NA	NA	NA	NA
SQJ25845.1\|3341800_3342280_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
SQJ25846.1\|3342396_3344049_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
SQJ25847.1\|3344372_3345443_+	fosmidomycin resistance protein	NA	NA	NA	NA
SQJ25848.1\|3345657_3347334_+	transport protein	NA	NA	NA	NA
SQJ25849.1\|3347382_3348732_-	inosine/guanosine kinase	NA	NA	NA	NA
SQJ25850.1\|3348839_3349811_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	6.6e-15	27.4
SQJ25851.1\|3349807_3350770_-	ferrochelatase	NA	NA	NA	NA
SQJ25852.1\|3350998_3351643_-	adenylate kinase	NA	NA	NA	NA
SQJ25853.1\|3351884_3353741_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	3.3e-116	37.2
SQJ25854.1\|3353815_3354013_+	Uncharacterised protein	NA	NA	NA	NA
SQJ25855.1\|3354056_3354476_-	recombination protein RecR	NA	NA	NA	NA
SQJ25856.1\|3354475_3354805_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQJ25857.1\|3355629_3356778_-	DNA polymerase III subunits gamma and tau	A0A1L2BWV7	Bacteriophage	1.4e-43	41.5
SQJ25858.1\|3356891_3357443_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
SQJ25859.1\|3357595_3357973_-	Inner membrane protein YbaN	NA	NA	NA	NA
SQJ25860.1\|3358053_3358569_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
SQJ25861.1\|3358582_3358750_+	Putative inner membrane protein	NA	NA	NA	NA
SQJ25862.1\|3358819_3359755_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	8.2e-63	51.2
SQJ25863.1\|3359796_3363159_-	integral membrane protein AefA	NA	NA	NA	NA
SQJ25864.1\|3363277_3363931_-	potential acrAB operon repressor	NA	NA	NA	NA
SQJ25865.1\|3364072_3365266_+	acriflavin resistance protein A	NA	NA	NA	NA
SQJ25866.1\|3365288_3368438_+	acriflavin resistance protein B	NA	NA	NA	NA
SQJ25867.1\|3368934_3369309_+	Hha toxicity attenuator	NA	NA	NA	NA
SQJ25868.1\|3369336_3369555_+	hemolysin expression modulating protein	NA	NA	NA	NA
SQJ25869.1\|3369733_3370276_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQJ25870.1\|3370402_3370873_+	Putative inner membrane protein	NA	NA	NA	NA
SQJ25871.1\|3370928_3371069_-	LSU ribosomal protein L36p	NA	NA	NA	NA
SQJ25872.1\|3371074_3371335_-	50S ribosomal protein L31	NA	NA	NA	NA
SQJ25873.1\|3371559_3373110_+	Uncharacterized protein ylaB	NA	NA	NA	NA
SQJ25874.1\|3373418_3373730_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
SQJ25875.1\|3373762_3374032_-	lipoprotein	NA	NA	NA	NA
SQJ25876.1\|3374018_3374333_-	lipoprotein	NA	NA	NA	NA
SQJ25877.1\|3374547_3374895_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQJ25878.1\|3374857_3375055_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQJ25879.1\|3375508_3376795_-	ammonium transporter	NA	NA	NA	NA
SQJ25880.1\|3376826_3377165_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQJ25881.1\|3377377_3378175_-	Multidrug resistance-like ATP-binding protein mdlB	F2Y2R6	Organic_Lake_phycodnavirus	6.0e-22	29.6
SQJ25882.1\|3378134_3379160_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	5.0e-13	24.0
SQJ25883.1\|3379152_3380925_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
SQJ25884.1\|3380965_3381424_-	transcriptional regulator	NA	NA	NA	NA
SQJ25885.1\|3381536_3381959_+	lyase	NA	NA	NA	NA
SQJ25886.1\|3381930_3382158_+	lyase	NA	NA	NA	NA
SQJ25887.1\|3382154_3382595_+	lyase	NA	NA	NA	NA
SQJ25888.1\|3382643_3383462_-	HMP-PP phosphatase	NA	NA	NA	NA
SQJ25889.1\|3383562_3384324_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQJ25890.1\|3384223_3384421_-	Uncharacterised protein	NA	NA	NA	NA
SQJ25891.1\|3384569_3385595_+	ABC transporter substrate-binding protein	A0A2H4J8Q7	uncultured_Caudovirales_phage	5.1e-26	72.8
SQJ25892.1\|3385578_3386025_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	4.8e-53	68.3
SQJ25893.1\|3386131_3386530_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
SQJ25894.1\|3386633_3387008_-	competence protein ComEA	NA	NA	NA	NA
SQJ25895.1\|3387157_3389029_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQJ25896.1\|3389320_3389593_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
SQJ25897.1\|3389801_3392156_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.6e-224	52.5
SQJ25898.1\|3392341_3393613_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.6e-131	56.5
SQJ25899.1\|3393864_3394488_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

DBSCAN-SWA_11

4345610 : 4391057

Burkholderia_phage(36.36%)

tRNA,tail,transposase,plate,integrase

attL 4364523:4364538|attR 4373490:4373505

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ30569.1\|4345610_4346609_-\|tRNA	tRNA dihydrouridine synthase A	NA	NA	NA	NA
SQJ30570.1\|4346696_4348007_-	conjugative transfer protein	NA	NA	NA	NA
SQJ30603.1\|4348253_4348769_+	zinc uptake regulation protein	NA	NA	NA	NA
SQJ30604.1\|4348868_4349081_-	stress-response protein	NA	NA	NA	NA
SQJ30605.1\|4349209_4350535_-	DNA-damage-inducible membrane protein	NA	NA	NA	NA
SQJ30606.1\|4350713_4351322_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
SQJ30607.1\|4351430_4351799_-	diacylglycerol kinase	NA	NA	NA	NA
SQJ30608.1\|4351969_4354207_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
SQJ30609.1\|4354172_4354391_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
SQJ30610.1\|4354489_4355362_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
SQJ30611.1\|4355375_4355873_-	chorismate lyase	NA	NA	NA	NA
SQJ30612.1\|4356053_4356971_-	maltose operon periplasmic protein	NA	NA	NA	NA
SQJ30613.1\|4357134_4358493_-	maltoporin	NA	NA	NA	NA
SQJ30614.1\|4358581_4359691_-	maltose/maltodextrin transport ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
SQJ30615.1\|4360052_4361243_+	maltose ABC transporter periplasmic protein	NA	NA	NA	NA
SQJ30616.1\|4361374_4362919_+	maltose transport inner membrane protein	NA	NA	NA	NA
SQJ30617.1\|4362933_4363824_+	maltose transport inner membrane protein	NA	NA	NA	NA
SQJ30618.1\|4363989_4364400_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
4364523:4364538	attL	NA	NA	NA	NA
SQJ30619.1\|4364542_4366639_-	lipoprotein	NA	NA	NA	NA
SQJ30620.1\|4366638_4366938_-	putative lipoprotein	NA	NA	NA	NA
SQJ30621.1\|4366915_4367374_-	putative lipoprotein	NA	NA	NA	NA
SQJ30622.1\|4367370_4367964_-	outer membrane lipoprotein	NA	NA	NA	NA
SQJ30623.1\|4368071_4368317_-	YjbE secreted protein	NA	NA	NA	NA
SQJ30624.1\|4368725_4369127_+\|transposase	ISPsy11, transposase OrfA	NA	NA	NA	NA
SQJ30625.1\|4369130_4369415_-	Uncharacterised protein	NA	NA	NA	NA
SQJ30626.1\|4369750_4370101_+\|integrase	integrase	NA	NA	NA	NA
SQJ30627.1\|4370043_4370154_-	Uncharacterised protein	NA	NA	NA	NA
SQJ30628.1\|4370305_4370533_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
SQJ30629.1\|4370560_4370779_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
SQJ30630.1\|4370775_4371246_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
SQJ30631.1\|4371217_4371736_-	Glucose-6-phosphate isomerase	NA	NA	NA	NA
SQJ30632.1\|4372135_4372777_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA
SQJ30633.1\|4372743_4373427_+	lysine-sensitive aspartokinase III	NA	NA	NA	NA
SQJ30634.1\|4373557_4373905_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
4373490:4373505	attR	NA	NA	NA	NA
SQJ30635.1\|4374481_4374769_+	membrane protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
SQJ30636.1\|4374804_4375377_+	lytic murein transglycosylase	Q5ZQZ1	Pseudomonas_phage	1.0e-60	60.4
SQJ30637.1\|4375389_4375680_+	membrane protein	Q6QIC4	Burkholderia_phage	3.4e-07	42.1
SQJ30638.1\|4375866_4376304_+	putative cytoplasmic protein	NA	NA	NA	NA
SQJ30639.1\|4376319_4376517_+	gp12	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
SQJ30640.1\|4376506_4377610_+\|tail	tail protein	A4JWK5	Burkholderia_virus	2.3e-133	68.6
SQJ30641.1\|4377602_4377935_+\|tail	tail protein	A4JWK5	Burkholderia_virus	2.0e-43	76.6
SQJ30642.1\|4377934_4378459_+\|tail	tail protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
SQJ30643.1\|4378510_4378828_+	Uncharacterised protein	NA	NA	NA	NA
SQJ30644.1\|4379012_4381379_+\|tail	tail protein	A4JWL0	Burkholderia_virus	1.1e-68	31.7
SQJ30645.1\|4381378_4382332_+	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	6.7e-36	50.8
SQJ30646.1\|4382331_4382541_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
SQJ30647.1\|4382528_4383572_+	gp21	A4JWL3	Burkholderia_virus	3.8e-77	45.9
SQJ30648.1\|4383581_4384304_+\|plate	baseplate protein	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
SQJ30649.1\|4384631_4384994_+	phage glucose translocase	I1TED9	Salmonella_phage	1.2e-43	70.8
SQJ30650.1\|4384990_4385920_+	bactoprenol glucosyl transferase	S5FKN0	Shigella_phage	6.7e-150	83.8
SQJ30651.1\|4385919_4387467_+	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
SQJ30652.1\|4387447_4387570_-	Uncharacterised protein	NA	NA	NA	NA
SQJ30653.1\|4387631_4387991_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
SQJ30654.1\|4387981_4388095_+\|plate	baseplate protein	NA	NA	NA	NA
SQJ30655.1\|4388051_4389098_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.0e-90	51.7
SQJ30656.1\|4389090_4389723_+\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	1.1e-23	56.4
SQJ30657.1\|4389725_4391057_+	gp19	A0A0M3ULH6	Salmonella_phage	1.4e-76	38.8

DBSCAN-SWA_12

4659479 : 4665595

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ31400.1\|4659479_4660610_-	UDP-4-amino-4-deoxy-L-arabinose- oxoglutarateaminotransferase UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase	A0A0F7LAY0	uncultured_marine_virus	3.3e-18	40.9
SQJ31401.1\|4660614_4660758_-	TDP-fucosamine acetyltransferase	NA	NA	NA	NA
SQJ31403.1\|4661058_4661289_-	TDP-D-fucosamine acetyltransferase	NA	NA	NA	NA
SQJ31405.1\|4661266_4661833_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.5e-59	60.1
SQJ31407.1\|4661849_4662149_-	glucose-1-phosphate thymidylyltransferase	A0A1D7XFC1	Escherichia_phage	9.4e-29	81.6
SQJ31408.1\|4662245_4662641_-	UDP-N-acetylglucosamine epimerase	I7HTA3	Enterobacteria_phage	5.9e-31	53.8
SQJ31410.1\|4662684_4663251_-	UDP-N-acetylglucosamine epimerase	I7HTA3	Enterobacteria_phage	6.8e-28	46.5
SQJ31412.1\|4663250_4664513_-	UDP-N-acetyl-D-mannosamine dehydrogenase	M1H3J6	Paramecium_bursaria_Chlorella_virus	1.6e-24	27.0
SQJ31413.1\|4664509_4665595_-	UDP-N-acetyl-D-glucosamine 2-epimerase	A0A1V0SAG5	Catovirus	1.4e-26	31.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483490

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection