CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483489	Salmonella enterica subsp. enterica serovar Poona strain NCTC4840 genome assembly, chromosome: 1	3 crisprs	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	21	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483489_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483489_1

630355-630603

Orphan

Consensus_repeat	Method
TTTTACAGGGCGACAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	PILER-CR

2 spacers

The CRISPR arrays of LS483489_1

>merge|LS483489|1|630355-630603|PILER-CR
GATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACTTCTTCATAAAACCCGCTTCGGCGGGTTTTTGCTTTTACAGGGCGACAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAACCCGTCAGTGTAAGCTGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA

>LS483489|1|1|630355-630603|PILER-CR
GATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACTTCTTCA	TAAAACCCGCTTCGGCGGGTTTTTGCTTTTACAGGGCGACAGGATGAATGACTGTCCAC
GACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAA	CCCGTCAGTGTAAGCTGGCGGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACG
ACGCTATACCCAAAAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
LS483489.1\|SQJ03820.1\|642859_643024_-\|Uncharacterized-protein-YhaL	unknown	unknown	unknown
LS483489.1\|SQJ03785.1\|638399_639764_+\|L-serine-dehydratase	unknown	unknown	gnl\|CDD\|185000
LS483489.1\|SQJ03739.1\|619367_620795_-\|PTS-fructose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|224218
LS483489.1\|SQJ03752.1\|624965_626537_-\|D-galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
LS483489.1\|SQJ03822.1\|643047_643749_-\|Pirin-like-protein-YhaK	unknown	unknown	gnl\|CDD\|224655
LS483489.1\|SQJ03738.1\|618574_619381_-\|PTS-fructose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
LS483489.1\|SQJ03763.1\|631349_632288_+\|TDC-operon-transcriptional-activator	unknown	unknown	gnl\|CDD\|182391
LS483489.1\|SQJ03789.1\|640079_641411_+\|membrane-protein	unknown	unknown	gnl\|CDD\|273283
LS483489.1\|SQJ03741.1\|621746_622601_-\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|183710
LS483489.1\|SQJ03742.1\|622934_623768_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
LS483489.1\|SQJ03773.1\|634793_636002_+\|propionate/acetate-kinase	unknown	unknown	gnl\|CDD\|183484
LS483489.1\|SQJ03767.1\|632385_633375_+\|catabolic-threonine-dehydratase	unknown	unknown	gnl\|CDD\|236317
LS483489.1\|SQJ03750.1\|623778_624726_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
LS483489.1\|SQJ03754.1\|627066_627837_+\|5-keto-4-deoxy-D-glucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
LS483489.1\|SQJ03756.1\|627862_628753_+\|tartronate-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|183197
LS483489.1\|SQJ03770.1\|633395_634727_+\|threonine/serine-transporter	unknown	unknown	gnl\|CDD\|184191
LS483489.1\|SQJ03760.1\|628850_629996_+\|Glycerate-2--kinase	unknown	unknown	gnl\|CDD\|182392
LS483489.1\|SQJ03740.1\|620821_621736_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|274804
LS483489.1\|SQJ03777.1\|636035_638330_+\|formate-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
LS483489.1\|SQJ03791.1\|641436_642747_+\|Inner-membrane-protein	unknown	unknown	gnl\|CDD\|226206

Protein	Function_ID	Function_description	E-value
LS483489.1\|SQJ03785.1\|638399_639764_+\|L-serine-dehydratase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
LS483489.1\|SQJ03739.1\|619367_620795_-\|PTS-fructose-transporter-subunit-IIBC	gnl\|CDD\|224218	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism].	6.45118e-127
LS483489.1\|SQJ03752.1\|624965_626537_-\|D-galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
LS483489.1\|SQJ03822.1\|643047_643749_-\|Pirin-like-protein-YhaK	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.87451e-68
LS483489.1\|SQJ03738.1\|618574_619381_-\|PTS-fructose-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.94322e-65
LS483489.1\|SQJ03763.1\|631349_632288_+\|TDC-operon-transcriptional-activator	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
LS483489.1\|SQJ03789.1\|640079_641411_+\|membrane-protein	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	3.37807e-164
LS483489.1\|SQJ03741.1\|621746_622601_-\|fructose-bisphosphate-aldolase	gnl\|CDD\|183710	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY.	0
LS483489.1\|SQJ03742.1\|622934_623768_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.54692e-55
LS483489.1\|SQJ03773.1\|634793_636002_+\|propionate/acetate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
LS483489.1\|SQJ03767.1\|632385_633375_+\|catabolic-threonine-dehydratase	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
LS483489.1\|SQJ03750.1\|623778_624726_+\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.26373e-99
LS483489.1\|SQJ03754.1\|627066_627837_+\|5-keto-4-deoxy-D-glucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
LS483489.1\|SQJ03756.1\|627862_628753_+\|tartronate-semialdehyde-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
LS483489.1\|SQJ03770.1\|633395_634727_+\|threonine/serine-transporter	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
LS483489.1\|SQJ03760.1\|628850_629996_+\|Glycerate-2--kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0
LS483489.1\|SQJ03740.1\|620821_621736_-\|6-phosphofructokinase	gnl\|CDD\|274804	TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).	4.12426e-128
LS483489.1\|SQJ03777.1\|636035_638330_+\|formate-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
LS483489.1\|SQJ03791.1\|641436_642747_+\|Inner-membrane-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0

>LS483489.1|SQJ03760.1|628850_629996_+|Glycerate-2--kinase
MKIVIAPDSYKESLSAAEVAQAIEKGFREIFPDAQYVSVPVADGGEGTVEAMIAATQGVERTAWVTGPLGEKVKACWGMSGDGKTAFIEMAAASGLALVPPEKRNPLITTSRGTGELILQALESGASNIIIGIGGSATNDGGAGMMQALGAKLRDANGADIGYGGGSLHCLSDIDISDLDPRLKLCAIRVACDVSNPLIGDNGASRIFGPQKGATEENIVELDRNLAHYADIIKKSLDVDVKAAPGAGAAGGMGAALMAFLGAELRSGIEIVTAALNLEEHIHDCTLVVTGEGRIDSQSIRGKVPIGVANVAKKYHKPVIGIAGSLTHDVGIVHHYGIDAVFSVLTRIVTLEEAFRGAFDNIYRASRNVAAALAIGMRSAG
>LS483489.1|SQJ03756.1|627862_628753_+|tartronate-semialdehyde-reductase
MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDVLKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVEVTR
>LS483489.1|SQJ03754.1|627066_627837_+|5-keto-4-deoxy-D-glucarate-aldolase
MNNAIFPNKFKAALAAQQVQIGCWSALASPITTEVLGLAGFDWLVLDGEHAPNDVTTLIPQLMALKGSASAPVVRVPTNEPVIIKRMLDIGFYNFLIPFVETQEEAARAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITIIVQIESQLGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQQTIQHIFARAKAHGKPCGILAPVEADARRYLEWGATFVAVGSDLGAFRASTQKLADTFKK
>LS483489.1|SQJ03752.1|624965_626537_-|D-galactarate-dehydratase
MANIEIRQESPSAFYIKVHETDNVAIIVNDHGLKAGTRFPDGLELTEHIPQGHKVALTDIPAHGEIIRYGEVIGYAVRDIPRGSWIDESLVELPKAPPLNTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKLIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNIALNPNFGGEVMVIGLGCEKLQPERLLEGTEDVPAIAVESASIVRLQDEQHVGFKSMVDDILRVAERHLTKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAINEAVGKRLLDEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWYDLMDINAGTIATGEETIEDVGWKLFHFILDVASGRKKTFSDQWGLHNQLAVFNPAPVT
>LS483489.1|SQJ03750.1|623778_624726_+|sugar-kinase
MNITIATLGELLVEFLAKKENQGFSSPGEFWGPYPSGAPAIFADQVAKLGFRSLLFSCVGNDAFGVMNITRLSRDGVNVQGISVLPNATTGSAFVSYRSQAQRDFIFNMPDSACGLLSADHLDETLLRQYRHFHIMGSSLFSFRLIDAVRKAISIVKENGGTISFDPNIRKEMLKIREMSQAFEYILDYTDFFLPSDGELDYFGLSKSRDEEKIVARLHKRGIAHVIIKRGARGASYYSKDEQHHVAGYPVKVVDPTGAGDCFGATFVSLFLAGYSVPDALAHANAAGSLAISARGPMEGTSTLAQIKELMMQQN
>LS483489.1|SQJ03742.1|622934_623768_+|DeoR-family-transcriptional-regulator
MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLSVSGVTIRNDLNYLEQQGYLKRSFGGAIYTAQPVRAAVSHEVVQSQALEHSVELELAKQVARLVCDDDTVFLGAGEVLRKALPFLGDYRDLCLIINDLSHVAPARDYIDGEIVLLGGVLGRSGQALGGEIAIQSLQQFQPSCCLVMVDHISEDGTLNVKNESAAALLSECLRLSGQSIAVVAQRPIHDVARYPVGKLNTLSAIITPQIVAAEYHSRFLADGLTNSYTNNECLTWINPTLHQAR
>LS483489.1|SQJ03741.1|621746_622601_-|fructose-bisphosphate-aldolase
MFIISSKNMLQKAQHAGYAVPAFNIHNLETLQVVVETAAEMRSPLIVAGTPGTFSYAGMGNIVAIAGDLAREYNLPLAIHLDHHESLADIESKVMAGIRSVMIDGSHFPFEENVALVKSVVDFCHRYDTSVEAELGRLGGIEDDLVVDSKDALYTNPQQAREFVARTGIDSLAVAIGTAHGMYAAEPKLDFERLAEIRALVDIPLVLHGASGLPESDIRQAISLGVCKVNVATELKIAFSDALKEYFLQNPKANDPRHYMQPAKQAMKEVVRKVIHVCGCEGQL
>LS483489.1|SQJ03740.1|620821_621736_-|6-phosphofructokinase
MIYTLTLNSAIDMNIFSDPLQPNIVNRTHHTEFCPNGKGVNVALVLDHFQIPAHILGIFGGFTGHYIVESLRTRKMPVTPAWVEEPTRINIFIHDGQQEYKLINPGSYIPDECKQQIITIISQLPDAEYLVISGSLPQGIESRFYAEIMHICQQKNIGVILDISHSSLRQLLEFKPLLIKPNDEEVKAIFGLTVSDDNDAKNTLTTLHALGAQNVLLTLGAKGMYFSNGIDYWFCSAPTVDLVSSACAGDAALAAFLSQWLSTGEVEYALSLASATGADVASSAGLGQLAAIETLLSQIHVRKL
>LS483489.1|SQJ03739.1|619367_620795_-|PTS-fructose-transporter-subunit-IIBC
MKKIIAVTGCPTGIAHTFMAEEALKNAAKKLSVEIKVETNGASGVENAIQPADLVDIAGVIIAADKDVLPDRFNGLPVIEVPVKEAIHHPAELINKVINGEAPIRKGESTTRTEIIEKESLGRQIYKHLMSGVSNMLPFVVAGGILIAVSFLWGIYSADPNSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRPGMVAGFVGGLLANATGAGFLGGIIAGFAAGYLMLWVKNRLEGLPRQYEGLKSIFIMPLIGVLVIGVLMSLLGQPVAAINNSMMNWLASLQEANPILLGIVVGAMCSFDFGGPVNKAAYVTGTLLLGQGNFYFMAGVSAACITPPLVIALATTFFPKGFSEEERAAGMVNYILGCTHITEGAIPFAAKDPLRVIPMMMIASSISAVLSYSLRIQVPAPHGGFLILPLVSQPLAWVLCILAGSACGAVMLGLWRLWAVRKNSVNTTPVVKAGGQNAAL
>LS483489.1|SQJ03738.1|618574_619381_-|PTS-fructose-transporter-subunit-IIA
MQLCEHDIFVSDERLDKVTALHRVVEKLSAAGNTTPDYLRGMLDREAQISTYLGNGIAIPHGTPESRDAVLQTGVKVIVFRYGVDWGDGNTAYLVTGIAARSNEHLEILRQLTRVLSDDAIPQALAKAESPSQVLTLLTGSTTNTPAAVELQEGEQATFVIHNPHGLHARPSAVLVKFIKQFQSHITVENLDNASGPVDGKNLMRVVSLGAKKGHRLLFRAQGEDAQQALREIEELIASGAGEMITVPVTPPPEVMQPKRSWLSRLFN
>LS483489.1|SQJ03763.1|631349_632288_+|TDC-operon-transcriptional-activator
MNTLVLPKTQHLVVFQEVIRSGSIGSAAKSLGLTQPAVSKIISDVEAYFGVELIVRKNTGVTLTEAGQVLLSWSESITREMKNMINEMNSMTCNTVVDVSFGFPSLIGFTFMSDMIHKFKEVFPKAQVSMYEAQLSSFLPALRDGRLDFAIGTLSNEMQLQDLHVEPLFESEFVLVASKSRTCTGTITLESLKDEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTTPFGSNQFITIPIKDTLPVARYAAVWSKNYRIKKAASVLVELAKQYSSYNGCRRRQLIEIE
>LS483489.1|SQJ03767.1|632385_633375_+|catabolic-threonine-dehydratase
MHITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVETEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYAGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVITEGAGALACAALLSEKLDSHIQNRKTVSIISGGNIDLSRVSQITGLVDA
>LS483489.1|SQJ03770.1|633395_634727_+|threonine/serine-transporter
MSTTDSIVSSQAKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLQMPALNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLSNIALTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKEFGREFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMADAKAQNIPVLSYLANHFASLSGTKSTFATVLEYGASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSMGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTLIGLLTILNIVYKLF
>LS483489.1|SQJ03773.1|634793_636002_+|propionate/acetate-kinase
MNEFPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPIHLAHSNYEDALKAITFELEKRDLTDSVALIGHRIAHGGELFTQSVIITDEIIDNIRRVSPLAPLHNYANLSGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLPWEYFSSLGVRRYGFHGTSHRYVSRRAYELLDLDEKNSGLIVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSVLIRQLVIEHLGVLGLTLDVEMNKQPNSHGERIISANPSQVICAVIPTNEEKMIALDAIHLGNVKAPVEFA
>LS483489.1|SQJ03777.1|636035_638330_+|formate-acetyltransferase
MKVNIDTSDMLYAEAWRDFKGTDWKEEINVRDFIQHNYTPYEGDESFLADATPATTALWEKVMAGIRIENATHAPVDFDTNIATTITAHDAGYIEKDLEKIVGLQTDKPLKRALHPFGGVNMIKSSFHAYGREMDADFEYTFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGIRYLVRERELQFADLQSNLERGQNLEATIRLREELAEHRRALLQMQEMAAKYGYDISRPARNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFNAGLLTEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEALPVAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLTDEVLDYDAVMESLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVAADSLSAIRYAQVKPIRNENGLAIDFAIEGEYPQYGNNDERVDSIACDLVKRFMQKISVLPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDAVRKTNLVGLLDGYFHHEAQVEGGQHLNVNVMNREMLLDAIEHPENYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAM
>LS483489.1|SQJ03785.1|638399_639764_+|L-serine-dehydratase
MISAFDIFKIGIGPSSSHTVGPMNAGKCFIDRLIDSGDLPRTTRITVDLYGSLSLTGKGHATDTAIIMGLAGNTPQDVNIDSIPAFIQEVARSSRLSVAGGAHVVDFPVADSILFHAETLARHENGMRITAWNGQTPLLHKTYYSIGGGFIVEEERFGQSHDVEKSVPYDFHSASELLTLCERQGLSVSGLMMQNELALRSKEQIDAGFARIWQVMATGIERGMNTEGVLPGPLNVPRRAVALRRLLVSSDNLSRDPMNVIDWINMFALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNANSIARYLLSAGAIGMLYKMNASISGAEVGCQGEVGVACSMAAAGLTELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMALRRTSEPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>LS483489.1|SQJ03789.1|640079_641411_+|membrane-protein
MESASNTSVILDASAPARRAGMTESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNIGALPPMALLIKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGVLFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAGWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKIKENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGASLYLIIITGLLLCVSPFLAFS
>LS483489.1|SQJ03791.1|641436_642747_+|Inner-membrane-protein
MFESKINPLWQSFILAVQEEVKPALGCTEPISLALAAAAAAAELDGTVERIDAWVSPNLMKNGMGVTVPGTGMVGLPIAAALGALGGNAKAGLEVLKDASAKAVADAKAMLAAGHVAVMLQEPCNDILFSRAKVYRGDSWACVTIVGDHTNIVRIETDKGVVFTQADNAQEEEKTSPLGVLSHTSLEEILAFVNAVPFDAIRFILDAARLNGALSQEGLRGSWGLHIGSTLAKQCDRGLLAKDLSTAILIRTSAASDARMGGATLPAMSNSGSGNQGITATVPVMVVAEHVGADDERLARALMLSHLSAIYIHHQLPRLSALCAATTAAMGAAAGMAWLIDGRYDTIAMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHNVEQSISNLCSLACRSMQQTDKQIIEIMASKAH
>LS483489.1|SQJ03820.1|642859_643024_-|Uncharacterized-protein-YhaL
MSKKSAKKRQPVVKPAVQEAMSATVPLGYEEMLTELEAIVADAEARLAEEEAAA
>LS483489.1|SQJ03822.1|643047_643749_-|Pirin-like-protein-YhaK
MITTRTAKQCGQADYGWLQARYTFSFGHYFDPTLLGYASLRVLNQEVLAPGASFQPRTYPKVDILNLILDGEAEYRDSDGNHVQAKAGEALLLAAQPGISYSEHNLSKVKPLTRMQLWLDACPERENALVQKIPLLAAQQQLLASPDGEQNSLQLRQQVWVHHITLEKGESLNFQLHGPRAYLQSIHGTFHALTHNEEREALTCGDGAFIRDEPNITLVADTPLRALLVDLPV

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Crispr_ID: LS483489_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483489_2

958985-959318

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

5 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of LS483489_2

>merge|LS483489|2|958985-959318|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGATTTGTATTGATTAATTTTGTCAAGATTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATCGACTACGGCGGGCGCAAACAATACACGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCAGGCCGGTATTGATTGCGAATTGCCACAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGTCAGCGGGGATAAACCGTACCAACAATTCAGCGTTACGCCAACGGTAACGTGTTCCCCGCGCCAACAAGGATAGCCGT

>LS483489|2|2|958985-959257|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTTGTATTGATTAATTTTGTCAAGATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCGACTACGGCGGGCGCAAACAATACACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGGCCGGTATTGATTGCGAATTGCCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>LS483489|2|1|958985-959318|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTTGTATTGATTAATTTTGTCAAGATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCGACTACGGCGGGCGCAAACAATACACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGGCCGGTATTGATTGCGAATTGCCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>LS483489|2|1|958985-959318|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATTTGTATTGATTAATTTTGTCAAGATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCGACTACGGCGGGCGCAAACAATACACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGCAGGCCGGTATTGATTGCGAATTGCCACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
LS483489.1\|SQJ04636.1\|969580_970399_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483489.1\|SQJ04634.1\|965507_966461_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	unknown	unknown	gnl\|CDD\|185277
LS483489.1\|SQJ04633.1\|964685_965420_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
LS483489.1\|SQJ04635.1\|966905_969569_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
LS483489.1\|SQJ04619.1\|948099_948723_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	unknown	unknown	gnl\|CDD\|236848
LS483489.1\|SQJ04630.1\|960300_960663_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	gnl\|CDD\|238264
LS483489.1\|SQJ04638.1\|971134_971695_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LS483489.1\|SQJ04620.1\|948780_950076_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|237291
LS483489.1\|SQJ04637.1\|970421_971138_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|187800
LS483489.1\|SQJ04628.1\|958016_958688_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	unknown	unknown	gnl\|CDD\|275126
LS483489.1\|SQJ04631.1\|961098_962898_+\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|182862
LS483489.1\|SQJ04626.1\|954862_956500_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
LS483489.1\|SQJ04627.1\|956582_957881_+\|enolase	unknown	unknown	gnl\|CDD\|234617
LS483489.1\|SQJ04622.1\|952516_952804_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	unknown	unknown	gnl\|CDD\|226136
LS483489.1\|SQJ04624.1\|953833_954163_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|236569
LS483489.1\|SQJ04621.1\|950127_952362_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
LS483489.1\|SQJ04632.1\|962897_964610_+\|sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|237402
LS483489.1\|SQJ04623.1\|952769_953066_+\|ParE-toxin-protein	unknown	unknown	gnl\|CDD\|226194
LS483489.1\|SQJ04625.1\|954134_954635_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	unknown	unknown	gnl\|CDD\|273082
LS483489.1\|SQJ04629.1\|959415_960213_+\|beta-lactamase	unknown	unknown	gnl\|CDD\|224158

Protein	Function_ID	Function_description	E-value
LS483489.1\|SQJ04636.1\|969580_970399_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.164e-98
LS483489.1\|SQJ04634.1\|965507_966461_-\|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
LS483489.1\|SQJ04633.1\|964685_965420_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	8.84882e-138
LS483489.1\|SQJ04635.1\|966905_969569_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
LS483489.1\|SQJ04619.1\|948099_948723_-\|BarA-sensory-histidine-kinase-(VarS-/-GacS)	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	2.69613e-112
LS483489.1\|SQJ04630.1\|960300_960663_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
LS483489.1\|SQJ04638.1\|971134_971695_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.13504e-32
LS483489.1\|SQJ04620.1\|948780_950076_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
LS483489.1\|SQJ04637.1\|970421_971138_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|187800	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.5273e-71
LS483489.1\|SQJ04628.1\|958016_958688_+\|Queuosine-Biosynthesis-QueE-Radical-SAM	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
LS483489.1\|SQJ04631.1\|961098_962898_+\|sulfite-reductase-subunit-alpha	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
LS483489.1\|SQJ04626.1\|954862_956500_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
LS483489.1\|SQJ04627.1\|956582_957881_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
LS483489.1\|SQJ04622.1\|952516_952804_+\|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	4.75155e-18
LS483489.1\|SQJ04624.1\|953833_954163_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.4914e-71
LS483489.1\|SQJ04621.1\|950127_952362_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
LS483489.1\|SQJ04632.1\|962897_964610_+\|sulfite-reductase-subunit-beta	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
LS483489.1\|SQJ04623.1\|952769_953066_+\|ParE-toxin-protein	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.79136e-12
LS483489.1\|SQJ04625.1\|954134_954635_+\|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG	gnl\|CDD\|273082	TIGR00444, Nucleoside_triphosphate_pyrophosphohydrolase, MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli. [Unknown function, General].	1.78605e-80
LS483489.1\|SQJ04629.1\|959415_960213_+\|beta-lactamase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	4.02249e-102

>LS483489.1|SQJ04628.1|958016_958688_+|Queuosine-Biosynthesis-QueE-Radical-SAM
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>LS483489.1|SQJ04627.1|956582_957881_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>LS483489.1|SQJ04626.1|954862_956500_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>LS483489.1|SQJ04625.1|954134_954635_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MFFGEISAGNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>LS483489.1|SQJ04624.1|953833_954163_+|Nucleoside-triphosphate-pyrophospho-hydrolase-MazG
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFWRDFRR
>LS483489.1|SQJ04623.1|952769_953066_+|ParE-toxin-protein
MRTVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>LS483489.1|SQJ04622.1|952516_952804_+|putative-transcriptional-regulators-containing-the-CopG/Arc/MetJ-DNA-binding-domain-and-a-metal-binding-domain
MARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>LS483489.1|SQJ04621.1|950127_952362_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>LS483489.1|SQJ04620.1|948780_950076_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVILTEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCLPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>LS483489.1|SQJ04619.1|948099_948723_-|BarA-sensory-histidine-kinase-(VarS-/-GacS)
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFYLQRDDAFLYWHCADLWLAAYARCHRAYP
>LS483489.1|SQJ04629.1|959415_960213_+|beta-lactamase
MALRIRVLLENHKGVGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPLTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>LS483489.1|SQJ04630.1|960300_960663_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>LS483489.1|SQJ04631.1|961098_962898_+|sulfite-reductase-subunit-alpha
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKRLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQAGKDFDNKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRDSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>LS483489.1|SQJ04632.1|962897_964610_+|sulfite-reductase-subunit-beta
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>LS483489.1|SQJ04633.1|964685_965420_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>LS483489.1|SQJ04634.1|965507_966461_-|secreted-protein-in-the-Sop-family;-transferred-to-eukaryotic-cells
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>LS483489.1|SQJ04635.1|966905_969569_+|helicase
MSIYHYWGKSRRGEIDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPESWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGENVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKGEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LS483489.1|SQJ04636.1|969580_970399_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDVADLPLSDQCDAAVFPWLAATRTSEQANAVTTPDQVDKLQAYWGDAASYPPGFCDFTVRLLRYLRR
>LS483489.1|SQJ04637.1|970421_971138_+|CRISPR-associated-protein-CasA
MTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNHTEANYESPAQVVKVFNARRLRDVKAGVWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>LS483489.1|SQJ04638.1|971134_971695_+|transposase
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKAAWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKTPDELLRQLRRAVQLLDGSVNLISLAEDIFRWCQEQDDLLSHHRRQQRPTEFLRIRWALEYYQAGDDDIDNEQD

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Crispr_ID: LS483489_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483489_3

975464-977140

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCGCA	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR

27 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of LS483489_3

>merge|LS483489|3|975464-977140|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGATAAACCGGTTTCCAAACTTTTATATTTCTGTGGACAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACTCTGCGTAATGGCAAATTCCAATTCTTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACAGTAAAAGTGAGGCAGCAGGGCGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATCAAGCCCCCCATCCGCCCGGGTTGAGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTCCTCGATAACGATCTGCACCAGGTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGTATCGGGTGTTTAATTTTTACGTGAGAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCAGAAATATTAGTTACCTCGGCGGCGTTAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATCACCTGTCGCTGGCGGAAATCAATAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGACACAATAGCGAAATCAATTACTGAAAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGCCAATTATACATTGGCTCTATATGAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCCCGGCCGAGGCCGTGACGGTGAAACAGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTACAGAAAAAAGAGGCGTCGCATGTGGCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCCTCACAGCGGCGCCCGCTGGTCACGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCGCCGTCTGTCACACCTGTTATGTAATTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAAAAGGATCGAACAAAAAACCTGTGGTCATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGTTACCGTTGTTCACGTCCGGTTCGCTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTGTACACGACGTAACGACCACATCATTCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGACGAGCGCAACGCAGGTTACTGGCGTTGAGTGTTCCCCGCGCCAGCGGGGATAAACCTGCGGAGCAGGCTAGCGAACCACTCCAGGGCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTCGCTCGCGCTCGTCCATCATTCCGCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGATAATCAGGTCGTTAATATTTTTTGTCTGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCAGAATTAACGGACGAACAGCGGCAGACAGTGTTCCCCGCGCCAGCGGGGATAAACCGACCGTTAAATCCTGGTCTACTACCCCGCCCACCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGCGGGACGACAGCGAACCATCCGGAAAAAGTGTTCCCCGAGCCAGCGGGGATAAACCGCCAGACGACCTTCGGTGTCTTTAATCAGTTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATAACGGGCGGGCGTTTATACGTGCCCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAGGCCGACGGTGTGTACACCTCTAAAAAGTGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483489|3|3|975464-975615|PILER-CR
GTGTTCCCCGCGCCAGCGGGATAAACCGGTT	TCCAAACTTTTATATTTCTGTGGACAATAGTGTTCCCCGC
GCCAGCGGGGATAAACCGCACTCTGCGTAAT	GGCAAATTCCAATTCTTTCGTGTTCCCCGC
GCCAGCGGGGATAAACCGCAGACAGTAAAAGTGAGGCAGCAGGGCGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATCAAGCCCCCCATCCGCCCGGGTTGAGAGGTGTTCCCCGCGCCAGCGGGGATAAACC	GAATTCCTCGATAACGATCTGCACCAGGTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGTATCGGGTGTTTAATTTTTACGTGAGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTCAGAAATATTAGTTACCTCGGCGGCGTTAGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCGATCACCTGTCGCTGGCGGAAATCAATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTGACACAATAGCGAAATCAATTACTGAAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGACGCCAATTATACATTGGCTCTATATGAATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTCCCGGCCGAGGCCGTGACGGTGAAACAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTACAGAAAAAAGAGGCGTCGCATGTGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGCCTCACAGCGGCGCCCGCTGGTCACGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCCGCCGTCTGTCACACCTGTTATGTAATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAAAGGATCGAACAAAAAACCTGTGGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGTTACCGTTGTTCACGTCCGGTTCGCTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCTGTACACGACGTAACGACCACATCATTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCGACGAGCGCAACGCAGGTTACTGGCGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGCGGAGCAGGCTAGCGAACCACTCCAGGGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTTTCGCTCGCGCTCGTCCATCATTCCGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATAATCAGGTCGTTAATATTTTTTGTCTGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGGCAGAATTAACGGACGAACAGCGGCAGACA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACCGTTAAATCCTGGTCTACTACCCCGCCCACC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGAGCGGGACGACAGCGAACCATCCGGAAAAA
GTGTTCCCCGAGCCAGCGGGGATAAACC	GCCAGACGACCTTCGGTGTCTTTAATCAGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGATAACGGGCGGGCGTTTATACGTGCCCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAAAAGGCCGACGGTGTGTACACCTCTAAAAA


>LS483489|3|2|975464-977140|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGATAAACCGG	TTTCCAAACTTTTATATTTCTGTGGACAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTCTGCGTAATGGCAAATTCCAATTCTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCCTCGATAACGATCTGCACCAGGTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTATCGGGTGTTTAATTTTTACGTGAGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATCACCTGTCGCTGGCGGAAATCAATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACACAATAGCGAAATCAATTACTGAAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCAATTATACATTGGCTCTATATGAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCTCACAGCGGCGCCCGCTGGTCACGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGCCGTCTGTCACACCTGTTATGTAATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAAAGGATCGAACAAAAAACCTGTGGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGTACACGACGTAACGACCACATCATTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGACGAGCGCAACGCAGGTTACTGGCGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GCGGAGCAGGCTAGCGAACCACTCCAGGGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAATCAGGTCGTTAATATTTTTTGTCTGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAGAATTAACGGACGAACAGCGGCAGACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTAAATCCTGGTCTACTACCCCGCCCACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGCGGGACGACAGCGAACCATCCGGAAAAA
GTGTTCCCCGAGCCAGCGGGGATAAACCG	CCAGACGACCTTCGGTGTCTTTAATCAGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATAACGGGCGGGCGTTTATACGTGCCCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAGGCCGACGGTGTGTACACCTCTAAAAA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483489|3|2|975464-977140|CRT
GTGTTCCCCGCGCCAGCGGGATAAACCGG	TTTCCAAACTTTTATATTTCTGTGGACAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTCTGCGTAATGGCAAATTCCAATTCTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCCTCGATAACGATCTGCACCAGGTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTATCGGGTGTTTAATTTTTACGTGAGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATCACCTGTCGCTGGCGGAAATCAATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACACAATAGCGAAATCAATTACTGAAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCAATTATACATTGGCTCTATATGAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCTCACAGCGGCGCCCGCTGGTCACGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGCCGTCTGTCACACCTGTTATGTAATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAAAGGATCGAACAAAAAACCTGTGGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGTACACGACGTAACGACCACATCATTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGACGAGCGCAACGCAGGTTACTGGCGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GCGGAGCAGGCTAGCGAACCACTCCAGGGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAATCAGGTCGTTAATATTTTTTGTCTGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAGAATTAACGGACGAACAGCGGCAGACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTAAATCCTGGTCTACTACCCCGCCCACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGCGGGACGACAGCGAACCATCCGGAAAAA
GTGTTCCCCGAGCCAGCGGGGATAAACCG	CCAGACGACCTTCGGTGTCTTTAATCAGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATAACGGGCGGGCGTTTATACGTGCCCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAGGCCGACGGTGTGTACACCTCTAAAAA
GTGTTCCCCGCGTCAGCGGGGATAAACAC

>LS483489|3|4|975707-977139|PILER-CR
	TCCAAACTTTTATATTTCTGTGGACAATAGTGTTCCCCGC
GCCAGCGGGGATAAACCGCACTCTGCGTAAT	GGCAAATTCCAATTCTTTCGTGTTCCCCGC
GCCAGCGGGGATAAACCGCAGACAGTAAAAGTGAGGCAGCAGGGCGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATCAAGCCCCCCATCCGCCCGGGTTGAGAGGTGTTCCCCGCGCCAGCGGGGATAAACC	GAATTCCTCGATAACGATCTGCACCAGGTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGTATCGGGTGTTTAATTTTTACGTGAGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTCAGAAATATTAGTTACCTCGGCGGCGTTAGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCGATCACCTGTCGCTGGCGGAAATCAATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTGACACAATAGCGAAATCAATTACTGAAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGACGCCAATTATACATTGGCTCTATATGAATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTCCCGGCCGAGGCCGTGACGGTGAAACAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTACAGAAAAAAGAGGCGTCGCATGTGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGCCTCACAGCGGCGCCCGCTGGTCACGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCCGCCGTCTGTCACACCTGTTATGTAATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAAAGGATCGAACAAAAAACCTGTGGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGTTACCGTTGTTCACGTCCGGTTCGCTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCTGTACACGACGTAACGACCACATCATTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCGACGAGCGCAACGCAGGTTACTGGCGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGCGGAGCAGGCTAGCGAACCACTCCAGGGCGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTTTCGCTCGCGCTCGTCCATCATTCCGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATAATCAGGTCGTTAATATTTTTTGTCTGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGGCAGAATTAACGGACGAACAGCGGCAGACA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACCGTTAAATCCTGGTCTACTACCCCGCCCACC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGAGCGGGACGACAGCGAACCATCCGGAAAAA
GTGTTCCCCGAGCCAGCGGGGATAAACC	GCCAGACGACCTTCGGTGTCTTTAATCAGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGATAACGGGCGGGCGTTTATACGTGCCCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAAAAGGCCGACGGTGTGTACACCTCTAAAAA
GTGTTCCCCGCGTCAGCGGGGATAAACA

Protein	Signature genes	Signature genes Name	Protein_function
LS483489.1\|SQJ04648.1\|980796_981402_+\|adenosine-5-phosphosulfate-kinase	unknown	unknown	gnl\|CDD\|179661
LS483489.1\|SQJ04638.1\|971134_971695_+\|transposase	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
LS483489.1\|SQJ04636.1\|969580_970399_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
LS483489.1\|SQJ04653.1\|983483_984533_+\|tRNA-pseudouridine-13-synthase	unknown	unknown	gnl\|CDD\|234884
LS483489.1\|SQJ04650.1\|981966_982278_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	unknown	unknown	gnl\|CDD\|179156
LS483489.1\|SQJ04640.1\|972777_973524_+\|CRISPR-associated-protein-Cas5e-family	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
LS483489.1\|SQJ04646.1\|978452_979361_+\|Sulfate-adenylyltransferase-subunit-2-1	unknown	unknown	gnl\|CDD\|235375
LS483489.1\|SQJ04647.1\|979370_980810_+\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
LS483489.1\|SQJ04651.1\|982645_983008_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
LS483489.1\|SQJ04644.1\|975073_975367_+\|ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
LS483489.1\|SQJ04643.1\|974153_975074_+\|CRISPR-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
LS483489.1\|SQJ04652.1\|983007_983487_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
LS483489.1\|SQJ04649.1\|981452_981776_+\|Inner-membrane-protein-ygbE	unknown	unknown	gnl\|CDD\|371891
LS483489.1\|SQJ04645.1\|977154_978201_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
LS483489.1\|SQJ04637.1\|970421_971138_+\|CRISPR-associated-protein-CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|187800
LS483489.1\|SQJ04641.1\|973505_973967_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
LS483489.1\|SQJ04642.1\|974010_974157_+\|CRISPR-associated-protein-Cse3-family	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
LS483489.1\|SQJ04639.1\|971708_972767_+\|CRISPR-associated-protein-Cse4	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
LS483489.1\|SQJ04654.1\|984513_985275_+\|stationary-phase-survival-protein-SurE	unknown	unknown	gnl\|CDD\|234732
LS483489.1\|SQJ04635.1\|966905_969569_+\|helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
LS483489.1\|SQJ04648.1\|980796_981402_+\|adenosine-5-phosphosulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145
LS483489.1\|SQJ04638.1\|971134_971695_+\|transposase	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.13504e-32
LS483489.1\|SQJ04636.1\|969580_970399_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.164e-98
LS483489.1\|SQJ04653.1\|983483_984533_+\|tRNA-pseudouridine-13-synthase	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
LS483489.1\|SQJ04650.1\|981966_982278_+\|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
LS483489.1\|SQJ04640.1\|972777_973524_+\|CRISPR-associated-protein-Cas5e-family	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.18709e-48
LS483489.1\|SQJ04646.1\|978452_979361_+\|Sulfate-adenylyltransferase-subunit-2-1	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
LS483489.1\|SQJ04647.1\|979370_980810_+\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
LS483489.1\|SQJ04651.1\|982645_983008_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.36045e-55
LS483489.1\|SQJ04644.1\|975073_975367_+\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
LS483489.1\|SQJ04643.1\|974153_975074_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
LS483489.1\|SQJ04652.1\|983007_983487_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
LS483489.1\|SQJ04649.1\|981452_981776_+\|Inner-membrane-protein-ygbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
LS483489.1\|SQJ04645.1\|977154_978201_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
LS483489.1\|SQJ04637.1\|970421_971138_+\|CRISPR-associated-protein-CasA	gnl\|CDD\|187800	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.5273e-71
LS483489.1\|SQJ04641.1\|973505_973967_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11053e-43
LS483489.1\|SQJ04642.1\|974010_974157_+\|CRISPR-associated-protein-Cse3-family	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	4.42329e-21
LS483489.1\|SQJ04639.1\|971708_972767_+\|CRISPR-associated-protein-Cse4	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.43286e-133
LS483489.1\|SQJ04654.1\|984513_985275_+\|stationary-phase-survival-protein-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
LS483489.1\|SQJ04635.1\|966905_969569_+\|helicase	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0

>LS483489.1|SQJ04644.1|975073_975367_+|ssRNA-endonuclease
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>LS483489.1|SQJ04643.1|974153_975074_+|CRISPR-associated-protein-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>LS483489.1|SQJ04642.1|974010_974157_+|CRISPR-associated-protein-Cse3-family
MIQFSSVDYTGVLVINDPALFLQRLAQGYGKSRAFGCGMMMIKPGEDA
>LS483489.1|SQJ04641.1|973505_973967_+|CRISPR-associated-protein-Cse3-family
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLVRQGGAKWLYPTRGER
>LS483489.1|SQJ04640.1|972777_973524_+|CRISPR-associated-protein-Cas5e-family
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGRAPDALREAYRQYQDKFNALRLPLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLSKEDACISQE
>LS483489.1|SQJ04639.1|971708_972767_+|CRISPR-associated-protein-Cse4
MTTFIQLHLLTAYPASNLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILVESGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>LS483489.1|SQJ04638.1|971134_971695_+|transposase
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKAAWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKTPDELLRQLRRAVQLLDGSVNLISLAEDIFRWCQEQDDLLSHHRRQQRPTEFLRIRWALEYYQAGDDDIDNEQD
>LS483489.1|SQJ04637.1|970421_971138_+|CRISPR-associated-protein-CasA
MTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNHTEANYESPAQVVKVFNARRLRDVKAGVWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>LS483489.1|SQJ04636.1|969580_970399_+|CRISPR-associated-protein-CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPEIPGAQTTKFNKDHFIKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDVADLPLSDQCDAAVFPWLAATRTSEQANAVTTPDQVDKLQAYWGDAASYPPGFCDFTVRLLRYLRR
>LS483489.1|SQJ04635.1|966905_969569_+|helicase
MSIYHYWGKSRRGEIDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYVLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPESWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGENVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYASGEHAWEMSVLRVRQSWWDKHKGEFERLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>LS483489.1|SQJ04645.1|977154_978201_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPAPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>LS483489.1|SQJ04646.1|978452_979361_+|Sulfate-adenylyltransferase-subunit-2-1
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>LS483489.1|SQJ04647.1|979370_980810_+|ATP-sulfurylase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>LS483489.1|SQJ04648.1|980796_981402_+|adenosine-5-phosphosulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>LS483489.1|SQJ04649.1|981452_981776_+|Inner-membrane-protein-ygbE
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>LS483489.1|SQJ04650.1|981966_982278_+|Cell-division-protein-DivIC-(FtsB)-stabilizesFtsL-against-RasP-cleavage
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>LS483489.1|SQJ04651.1|982645_983008_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MRGLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>LS483489.1|SQJ04652.1|983007_983487_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>LS483489.1|SQJ04653.1|983483_984533_+|tRNA-pseudouridine-13-synthase
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>LS483489.1|SQJ04654.1|984513_985275_+|stationary-phase-survival-protein-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483489_3	3.2\|975566\|30\|LS483489\|PILER-CR	975566-975595	30	NZ_LN890526	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence	41461-41490	0	1.0
LS483489_3	3.4\|975553\|32\|LS483489\|CRISPRCasFinder,CRT	975553-975584	32	NZ_LN890526	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence	41461-41492	0	1.0
LS483489_3	3.24\|976774\|32\|LS483489\|CRISPRCasFinder,CRT	976774-976805	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	42567-42598	4	0.875
LS483489_2	2.4\|959197\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959197-959228	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
LS483489_2	2.4\|959197\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959197-959228	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
LS483489_2	2.4\|959197\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959197-959228	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	JN672684	Enterobacteria phage F20, partial genome	37715-37746	5	0.844
LS483489_2	2.4\|959197\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959197-959228	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_049845	Klebsiella phage PhiKpNIH-2, complete genome	5047-5078	6	0.812
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MK931442	Klebsiella phage Sin4, complete genome	12746-12777	6	0.812
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	JN672684	Enterobacteria phage F20, partial genome	37714-37746	6	0.818
LS483489_2	2.1\|959014\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959014-959045	32	AJ344259	Sulfolobus virus SIRV-2 genomic DNA	29744-29775	7	0.781
LS483489_2	2.4\|959197\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959197-959228	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
LS483489_2	2.4\|959197\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959197-959228	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
LS483489_3	3.10\|975920\|32\|LS483489\|CRISPRCasFinder,CRT	975920-975951	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1096435-1096466	7	0.781
LS483489_3	3.13\|976103\|32\|LS483489\|CRISPRCasFinder,CRT	976103-976134	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	173164-173195	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MN101222	Klebsiella phage KOX9, complete genome	4022-4053	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MN395285	Klebsiella phage PhiKpNIH-10, complete genome	47499-47530	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	KY575286	UNVERIFIED: Klebsiella phage SH-Kp 160016, complete genome	10222-10253	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MH633486	Klebsiella phage NJS3, complete genome	12271-12302	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MK618657	Klebsiella phage Sanco, complete genome	11812-11843	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_049842	Klebsiella phage vB_KpnS_15-38_KLPPOU149, complete genome	24549-24580	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	LR757892	Klebsiella phage vB_KpnS_2811 genome assembly, chromosome: 1	16590-16621	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MF415412	Klebsiella phage KPN N141, complete genome	24560-24591	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MF612072	Klebsiella phage MezzoGao, complete genome	47872-47903	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MT894005	Klebsiella phage MMBB, complete genome	14709-14740	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MG552615	Klebsiella virus GML-KpCol1, complete genome	29536-29567	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MK931445	Klebsiella phage Shelby, complete genome	12464-12495	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	JF501022	Klebsiella phage KP36, complete genome	13458-13489	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	KP658157	Klebsiella phage 1513, complete genome	14165-14196	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MH445453	Klebsiella phage NJS1, complete genome	12156-12187	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_028760	Klebsiella phage KLPN1, complete genome	11954-11985	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_049848	Klebsiella phage KP1801, complete genome	44390-44421	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MH633484	Klebsiella phage TAH8, complete genome	12465-12496	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_048043	Klebsiella phage NJS2, complete genome	13062-13093	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MK931443	Klebsiella phage Sweeny, complete genome	13249-13280	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_049838	Klebsiella phage KL, complete genome	21132-21163	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MH844531	Klebsiella phage GH-K3, complete genome	37090-37121	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_048044	Klebsiella phage NJR15, complete genome	12303-12334	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MG894052	Klebsiella phage JY917, complete genome	33612-33643	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_048126	Klebsiella phage TSK1, complete genome	10201-10232	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	MK931444	Klebsiella phage Skenny, complete genome	12271-12302	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_048143	Klebsiella phage KpKT21phi1, complete genome	23737-23768	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_028774	Klebsiella phage Sushi, complete genome	4177-4208	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_049840	Klebsiella phage vB_KpnS_FZ10, complete genome	12716-12747	7	0.781
LS483489_3	3.22\|976652\|32\|LS483489\|CRISPRCasFinder,CRT	976652-976683	32	NC_049844	Klebsiella phage 13, complete genome	19558-19589	7	0.781
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_049845	Klebsiella phage PhiKpNIH-2, complete genome	5046-5078	7	0.788
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MK931442	Klebsiella phage Sin4, complete genome	12746-12778	7	0.788
LS483489_2	2.1\|959014\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959014-959045	32	GU943054	Uncultured phage MedDCM-OCT-S04-C24 genomic sequence	15155-15186	8	0.75
LS483489_2	2.1\|959014\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959014-959045	32	MN693497	Marine virus AFVG_25M179, complete genome	38164-38195	8	0.75
LS483489_2	2.4\|959197\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959197-959228	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
LS483489_3	3.3\|975493\|31\|LS483489\|CRISPRCasFinder,CRT	975493-975523	31	NZ_AP018257	Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome	195507-195537	8	0.742
LS483489_3	3.7\|975736\|32\|LS483489\|CRISPRCasFinder,CRT	975736-975767	32	NZ_CP010615	Phaeobacter inhibens strain P92 plasmid pP92_e, complete sequence	20313-20344	8	0.75
LS483489_3	3.7\|975736\|32\|LS483489\|CRISPRCasFinder,CRT	975736-975767	32	NZ_CP010634	Phaeobacter inhibens strain P78 plasmid pP78_e, complete sequence	20313-20344	8	0.75
LS483489_3	3.7\|975736\|32\|LS483489\|CRISPRCasFinder,CRT	975736-975767	32	NZ_CP010606	Phaeobacter inhibens strain P83 plasmid pP83_g, complete sequence	20321-20352	8	0.75
LS483489_3	3.7\|975736\|32\|LS483489\|CRISPRCasFinder,CRT	975736-975767	32	NZ_CP010774	Phaeobacter piscinae strain P13 plasmid pP13_g, complete sequence	20321-20352	8	0.75
LS483489_3	3.7\|975736\|32\|LS483489\|CRISPRCasFinder,CRT	975736-975767	32	NZ_CP010712	Phaeobacter inhibens strain P66 plasmid pP66_g, complete sequence	20337-20368	8	0.75
LS483489_3	3.13\|976103\|32\|LS483489\|CRISPRCasFinder,CRT	976103-976134	32	KM659097	Paracoccus yeei plasmid pLM20P5, complete sequence	11561-11592	8	0.75
LS483489_3	3.13\|976103\|32\|LS483489\|CRISPRCasFinder,CRT	976103-976134	32	MH834622	Arthrobacter phage Noely, complete genome	3314-3345	8	0.75
LS483489_3	3.15\|976225\|32\|LS483489\|CRISPRCasFinder,CRT	976225-976256	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	535727-535758	8	0.75
LS483489_3	3.24\|976774\|32\|LS483489\|CRISPRCasFinder,CRT	976774-976805	32	MH458951	Bacillus phage vB_BthS-BMBphi, complete genome	2793-2824	8	0.75
LS483489_3	3.36\|976102\|33\|LS483489\|PILER-CR	976102-976134	33	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	173164-173196	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	KY575286	UNVERIFIED: Klebsiella phage SH-Kp 160016, complete genome	10221-10253	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MT894005	Klebsiella phage MMBB, complete genome	14708-14740	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MG552615	Klebsiella virus GML-KpCol1, complete genome	29535-29567	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	KP658157	Klebsiella phage 1513, complete genome	14164-14196	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_049848	Klebsiella phage KP1801, complete genome	44389-44421	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MH844531	Klebsiella phage GH-K3, complete genome	37089-37121	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MG894052	Klebsiella phage JY917, complete genome	33611-33643	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_048143	Klebsiella phage KpKT21phi1, complete genome	23736-23768	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_049844	Klebsiella phage 13, complete genome	19557-19589	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MN395285	Klebsiella phage PhiKpNIH-10, complete genome	47499-47531	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MH633486	Klebsiella phage NJS3, complete genome	12271-12303	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MK618657	Klebsiella phage Sanco, complete genome	11812-11844	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_049842	Klebsiella phage vB_KpnS_15-38_KLPPOU149, complete genome	24549-24581	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	LR757892	Klebsiella phage vB_KpnS_2811 genome assembly, chromosome: 1	16590-16622	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MF415412	Klebsiella phage KPN N141, complete genome	24560-24592	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MF612072	Klebsiella phage MezzoGao, complete genome	47872-47904	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MK931445	Klebsiella phage Shelby, complete genome	12464-12496	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	JF501022	Klebsiella phage KP36, complete genome	13458-13490	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MH445453	Klebsiella phage NJS1, complete genome	12156-12188	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_028760	Klebsiella phage KLPN1, complete genome	11954-11986	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MH633484	Klebsiella phage TAH8, complete genome	12465-12497	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_048043	Klebsiella phage NJS2, complete genome	13062-13094	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MK931443	Klebsiella phage Sweeny, complete genome	13249-13281	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_049838	Klebsiella phage KL, complete genome	21132-21164	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_048044	Klebsiella phage NJR15, complete genome	12303-12335	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_048126	Klebsiella phage TSK1, complete genome	10201-10233	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	MK931444	Klebsiella phage Skenny, complete genome	12271-12303	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_028774	Klebsiella phage Sushi, complete genome	4177-4209	8	0.758
LS483489_3	3.45\|976651\|33\|LS483489\|PILER-CR	976651-976683	33	NC_049840	Klebsiella phage vB_KpnS_FZ10, complete genome	12716-12748	8	0.758
LS483489_3	3.3\|975493\|31\|LS483489\|CRISPRCasFinder,CRT	975493-975523	31	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	513302-513332	9	0.71
LS483489_3	3.5\|975614\|32\|LS483489\|CRISPRCasFinder,CRT	975614-975645	32	NZ_CP049117	Pantoea stewartii strain ZJ-FGZX1 plasmid unnamed2, complete sequence	40403-40434	9	0.719
LS483489_3	3.5\|975614\|32\|LS483489\|CRISPRCasFinder,CRT	975614-975645	32	NZ_CP035035	Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence	6373-6404	9	0.719
LS483489_3	3.13\|976103\|32\|LS483489\|CRISPRCasFinder,CRT	976103-976134	32	MF919512	Mycobacterium phage Klein, complete genome	101112-101143	9	0.719
LS483489_3	3.14\|976164\|32\|LS483489\|CRISPRCasFinder,CRT	976164-976195	32	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	670891-670922	9	0.719
LS483489_3	3.16\|976286\|32\|LS483489\|CRISPRCasFinder,CRT	976286-976317	32	AP013386	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C23-MedDCM-OCT-S37-C51	33360-33391	9	0.719
LS483489_3	3.16\|976286\|32\|LS483489\|CRISPRCasFinder,CRT	976286-976317	32	GU943014	Uncultured phage MedDCM-OCT-S04-C1161 genomic sequence	17166-17197	9	0.719
LS483489_3	3.16\|976286\|32\|LS483489\|CRISPRCasFinder,CRT	976286-976317	32	AP014420	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C167, * SEQUENCING IN PROGRESS *, 5 ordered pieces	1557-1588	9	0.719
LS483489_3	3.16\|976286\|32\|LS483489\|CRISPRCasFinder,CRT	976286-976317	32	GU943017	Uncultured phage MedDCM-OCT-S04-C1227 genomic sequence	8838-8869	9	0.719
LS483489_3	3.16\|976286\|32\|LS483489\|CRISPRCasFinder,CRT	976286-976317	32	AP014417	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S39-C59, * SEQUENCING IN PROGRESS *, 5 ordered pieces	32062-32093	9	0.719
LS483489_3	3.16\|976286\|32\|LS483489\|CRISPRCasFinder,CRT	976286-976317	32	GU943022	Uncultured phage MedDCM-OCT-S04-C890 genomic sequence	8801-8832	9	0.719
LS483489_3	3.16\|976286\|32\|LS483489\|CRISPRCasFinder,CRT	976286-976317	32	GU943013	Uncultured phage MedDCM-OCT-S04-C1035 genomic sequence	10849-10880	9	0.719
LS483489_3	3.16\|976286\|32\|LS483489\|CRISPRCasFinder,CRT	976286-976317	32	AP014416	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S27-C110, * SEQUENCING IN PROGRESS *, 4 ordered pieces	9243-9274	9	0.719
LS483489_3	3.23\|976713\|32\|LS483489\|CRISPRCasFinder,CRT	976713-976744	32	AP018319	Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome	224616-224647	9	0.719
LS483489_3	3.26\|976897\|32\|LS483489\|CRISPRCasFinder,CRT	976897-976928	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2054717-2054748	9	0.719
LS483489_3	3.30\|975735\|33\|LS483489\|PILER-CR	975735-975767	33	NZ_CP010615	Phaeobacter inhibens strain P92 plasmid pP92_e, complete sequence	20312-20344	9	0.727
LS483489_3	3.30\|975735\|33\|LS483489\|PILER-CR	975735-975767	33	NZ_CP010634	Phaeobacter inhibens strain P78 plasmid pP78_e, complete sequence	20312-20344	9	0.727
LS483489_3	3.30\|975735\|33\|LS483489\|PILER-CR	975735-975767	33	NZ_CP010606	Phaeobacter inhibens strain P83 plasmid pP83_g, complete sequence	20320-20352	9	0.727
LS483489_3	3.30\|975735\|33\|LS483489\|PILER-CR	975735-975767	33	NZ_CP010774	Phaeobacter piscinae strain P13 plasmid pP13_g, complete sequence	20320-20352	9	0.727
LS483489_3	3.30\|975735\|33\|LS483489\|PILER-CR	975735-975767	33	NZ_CP010712	Phaeobacter inhibens strain P66 plasmid pP66_g, complete sequence	20336-20368	9	0.727
LS483489_2	2.1\|959014\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959014-959045	32	MK867354	Synechococcus phage S-SCSM1, complete genome	85554-85585	10	0.688
LS483489_2	2.1\|959014\|32\|LS483489\|PILER-CR,CRISPRCasFinder,CRT	959014-959045	32	NC_031056	Bacillus phage Deep Blue, complete genome	12274-12305	10	0.688
LS483489_3	3.8\|975797\|32\|LS483489\|CRISPRCasFinder,CRT	975797-975828	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	786976-787007	10	0.688
LS483489_3	3.13\|976103\|32\|LS483489\|CRISPRCasFinder,CRT	976103-976134	32	NZ_CP040821	Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence	111697-111728	10	0.688
LS483489_3	3.13\|976103\|32\|LS483489\|CRISPRCasFinder,CRT	976103-976134	32	MN908686	Microbacterium phage Zepp, complete genome	30030-30061	10	0.688
LS483489_3	3.13\|976103\|32\|LS483489\|CRISPRCasFinder,CRT	976103-976134	32	MT889377	Microbacterium phage Zayuliv, complete genome	30596-30627	10	0.688
LS483489_3	3.39\|976285\|33\|LS483489\|PILER-CR	976285-976317	33	AP013386	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C23-MedDCM-OCT-S37-C51	33360-33392	10	0.697
LS483489_3	3.39\|976285\|33\|LS483489\|PILER-CR	976285-976317	33	GU943014	Uncultured phage MedDCM-OCT-S04-C1161 genomic sequence	17166-17198	10	0.697
LS483489_3	3.39\|976285\|33\|LS483489\|PILER-CR	976285-976317	33	AP014420	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C167, * SEQUENCING IN PROGRESS *, 5 ordered pieces	1556-1588	10	0.697
LS483489_3	3.39\|976285\|33\|LS483489\|PILER-CR	976285-976317	33	GU943017	Uncultured phage MedDCM-OCT-S04-C1227 genomic sequence	8837-8869	10	0.697
LS483489_3	3.39\|976285\|33\|LS483489\|PILER-CR	976285-976317	33	AP014417	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S39-C59, * SEQUENCING IN PROGRESS *, 5 ordered pieces	32062-32094	10	0.697
LS483489_3	3.39\|976285\|33\|LS483489\|PILER-CR	976285-976317	33	GU943022	Uncultured phage MedDCM-OCT-S04-C890 genomic sequence	8800-8832	10	0.697
LS483489_3	3.39\|976285\|33\|LS483489\|PILER-CR	976285-976317	33	GU943013	Uncultured phage MedDCM-OCT-S04-C1035 genomic sequence	10849-10881	10	0.697
LS483489_3	3.39\|976285\|33\|LS483489\|PILER-CR	976285-976317	33	AP014416	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S27-C110, * SEQUENCING IN PROGRESS *, 4 ordered pieces	9243-9275	10	0.697

1. spacer 3.2|975566|30|LS483489|PILER-CR matches to NZ_LN890526 (Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence) position: , mismatch: 0, identity: 1.0

ctctgcgtaatggcaaattccaattctttc	CRISPR spacer
ctctgcgtaatggcaaattccaattctttc	Protospacer
******************************

2. spacer 3.4|975553|32|LS483489|CRISPRCasFinder,CRT matches to NZ_LN890526 (Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence) position: , mismatch: 0, identity: 1.0

cactctgcgtaatggcaaattccaattctttc	CRISPR spacer
cactctgcgtaatggcaaattccaattctttc	Protospacer
********************************

3. spacer 3.24|976774|32|LS483489|CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.875

gggcagaattaacggacgaacagcggcagaca	CRISPR spacer
gagctgaattaacggacgaacagcgccagacg	Protospacer
*.** ******************** *****.

4. spacer 2.4|959197|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

5. spacer 2.4|959197|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

6. spacer 2.4|959197|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

7. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to JN672684 (Enterobacteria phage F20, partial genome) position: , mismatch: 5, identity: 0.844

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ttcgcgctcgcgatcgtccatcattccgaacc	Protospacer
**. ******** *************** .**

8. spacer 2.4|959197|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****.

9. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_049845 (Klebsiella phage PhiKpNIH-2, complete genome) position: , mismatch: 6, identity: 0.812

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ttcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
**. ******** ***********.*** .**

10. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MK931442 (Klebsiella phage Sin4, complete genome) position: , mismatch: 6, identity: 0.812

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ttcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
**. ******** ***********.*** .**

11. spacer 3.45|976651|33|LS483489|PILER-CR matches to JN672684 (Enterobacteria phage F20, partial genome) position: , mismatch: 6, identity: 0.818

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tttcgcgctcgcgatcgtccatcattccgaacc	Protospacer
 **. ******** *************** .**

12. spacer 2.1|959014|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to AJ344259 (Sulfolobus virus SIRV-2 genomic DNA) position: , mismatch: 7, identity: 0.781

---cgatttgtattgattaattttgtcaagattgt	CRISPR spacer
agtcgat---tattgataaattttttcaagattcg	Protospacer
   ****   ******* ****** ********

13. spacer 2.4|959197|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

14. spacer 2.4|959197|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **.

15. spacer 3.10|975920|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

-gcgatcacctgtcgctggcggaaatcaatagc	CRISPR spacer
cgcaa-ggcgtgtcgctggcggacatcaacagc	Protospacer
 **.*  .* ************* *****.***

16. spacer 3.13|976103|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
gaccccgcccaggccgtgacggtgaatgcgaa	Protospacer
  *** *** ****************   ***

17. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MN101222 (Klebsiella phage KOX9, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcgatcgtccatcattccaaacc	Protospacer
.*. ******** **************. .**

18. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MN395285 (Klebsiella phage PhiKpNIH-10, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

19. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to KY575286 (UNVERIFIED: Klebsiella phage SH-Kp 160016, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

20. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MH633486 (Klebsiella phage NJS3, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

21. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MK618657 (Klebsiella phage Sanco, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

22. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_049842 (Klebsiella phage vB_KpnS_15-38_KLPPOU149, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

23. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to LR757892 (Klebsiella phage vB_KpnS_2811 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

24. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MF415412 (Klebsiella phage KPN N141, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

25. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MF612072 (Klebsiella phage MezzoGao, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

26. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MT894005 (Klebsiella phage MMBB, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

27. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MG552615 (Klebsiella virus GML-KpCol1, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

28. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MK931445 (Klebsiella phage Shelby, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcataccgaacc	Protospacer
.*. ******** *********** *** .**

29. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to JF501022 (Klebsiella phage KP36, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

30. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to KP658157 (Klebsiella phage 1513, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

31. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MH445453 (Klebsiella phage NJS1, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

32. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_028760 (Klebsiella phage KLPN1, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

33. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_049848 (Klebsiella phage KP1801, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

34. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MH633484 (Klebsiella phage TAH8, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

35. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_048043 (Klebsiella phage NJS2, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

36. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MK931443 (Klebsiella phage Sweeny, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

37. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_049838 (Klebsiella phage KL, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

38. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MH844531 (Klebsiella phage GH-K3, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

39. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_048044 (Klebsiella phage NJR15, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

40. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MG894052 (Klebsiella phage JY917, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

41. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_048126 (Klebsiella phage TSK1, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

42. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to MK931444 (Klebsiella phage Skenny, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

43. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_048143 (Klebsiella phage KpKT21phi1, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

44. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_028774 (Klebsiella phage Sushi, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

45. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_049840 (Klebsiella phage vB_KpnS_FZ10, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

46. spacer 3.22|976652|32|LS483489|CRISPRCasFinder,CRT matches to NC_049844 (Klebsiella phage 13, complete genome) position: , mismatch: 7, identity: 0.781

ttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
ctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
.*. ******** ***********.*** .**

47. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_049845 (Klebsiella phage PhiKpNIH-2, complete genome) position: , mismatch: 7, identity: 0.788

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tttcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 **. ******** ***********.*** .**

48. spacer 3.45|976651|33|LS483489|PILER-CR matches to MK931442 (Klebsiella phage Sin4, complete genome) position: , mismatch: 7, identity: 0.788

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tttcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 **. ******** ***********.*** .**

49. spacer 2.1|959014|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to GU943054 (Uncultured phage MedDCM-OCT-S04-C24 genomic sequence) position: , mismatch: 8, identity: 0.75

cgatttgtattgattaattttgtcaagattgt	CRISPR spacer
taaaattttttgattaattttttcgagattgt	Protospacer
..*  * * ************ **.*******

50. spacer 2.1|959014|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to MN693497 (Marine virus AFVG_25M179, complete genome) position: , mismatch: 8, identity: 0.75

cgatttgtattgattaattttgtcaagattgt----	CRISPR spacer
cgatttgtatatattaattttgt----gctgtgagc	Protospacer
**********  ***********    ..***

51. spacer 2.4|959197|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***

52. spacer 3.3|975493|31|LS483489|CRISPRCasFinder,CRT matches to NZ_AP018257 (Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome) position: , mismatch: 8, identity: 0.742

tttccaaacttttatatttctgtggacaata	CRISPR spacer
gttgttaaatttaatatttctgtggacaact	Protospacer
 ** . ** *** ****************.

53. spacer 3.7|975736|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP010615 (Phaeobacter inhibens strain P92 plasmid pP92_e, complete sequence) position: , mismatch: 8, identity: 0.75

aattcctc------gataacgatctgcaccaggttgaa	CRISPR spacer
------tcagaaaagagaacgatcggcaccaggttgaa	Protospacer
      **      ** ******* *************

54. spacer 3.7|975736|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP010634 (Phaeobacter inhibens strain P78 plasmid pP78_e, complete sequence) position: , mismatch: 8, identity: 0.75

aattcctc------gataacgatctgcaccaggttgaa	CRISPR spacer
------tcagaaaagagaacgatcggcaccaggttgaa	Protospacer
      **      ** ******* *************

55. spacer 3.7|975736|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP010606 (Phaeobacter inhibens strain P83 plasmid pP83_g, complete sequence) position: , mismatch: 8, identity: 0.75

aattcctc------gataacgatctgcaccaggttgaa	CRISPR spacer
------tcagaaaagagaacgatcggcaccaggttgaa	Protospacer
      **      ** ******* *************

56. spacer 3.7|975736|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP010774 (Phaeobacter piscinae strain P13 plasmid pP13_g, complete sequence) position: , mismatch: 8, identity: 0.75

aattcctc------gataacgatctgcaccaggttgaa	CRISPR spacer
------tcagaaaagagaacgatcggcaccaggttgaa	Protospacer
      **      ** ******* *************

57. spacer 3.7|975736|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP010712 (Phaeobacter inhibens strain P66 plasmid pP66_g, complete sequence) position: , mismatch: 8, identity: 0.75

aattcctc------gataacgatctgcaccaggttgaa	CRISPR spacer
------tcagaaaagagaacgatcggcaccaggttgaa	Protospacer
      **      ** ******* *************

58. spacer 3.13|976103|32|LS483489|CRISPRCasFinder,CRT matches to KM659097 (Paracoccus yeei plasmid pLM20P5, complete sequence) position: , mismatch: 8, identity: 0.75

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
gtcccggccgagggcgggacggtgctgcggac	Protospacer
 ************ ** *******  .*.**

59. spacer 3.13|976103|32|LS483489|CRISPRCasFinder,CRT matches to MH834622 (Arthrobacter phage Noely, complete genome) position: , mismatch: 8, identity: 0.75

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
gccccggacggggccgtgacggtgacgcccaa	Protospacer
 .***** **.************** .*  **

60. spacer 3.15|976225|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

ggcctcaca-gcggcgcccgctggtcacgacca	CRISPR spacer
-gttgagcaggcggcgcccgctggcctcgacca	Protospacer
 *..  .** **************.* ******

61. spacer 3.24|976774|32|LS483489|CRISPRCasFinder,CRT matches to MH458951 (Bacillus phage vB_BthS-BMBphi, complete genome) position: , mismatch: 8, identity: 0.75

gggcagaattaacggacgaacagcggcagaca	CRISPR spacer
tgaatggattaacggacgaacagcgaaagaga	Protospacer
 *.  *.******************. *** *

62. spacer 3.36|976102|33|LS483489|PILER-CR matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

gctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
cgaccccgcccaggccgtgacggtgaatgcgaa	Protospacer
   *** *** ****************   ***

63. spacer 3.45|976651|33|LS483489|PILER-CR matches to KY575286 (UNVERIFIED: Klebsiella phage SH-Kp 160016, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

64. spacer 3.45|976651|33|LS483489|PILER-CR matches to MT894005 (Klebsiella phage MMBB, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

65. spacer 3.45|976651|33|LS483489|PILER-CR matches to MG552615 (Klebsiella virus GML-KpCol1, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

66. spacer 3.45|976651|33|LS483489|PILER-CR matches to KP658157 (Klebsiella phage 1513, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

67. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_049848 (Klebsiella phage KP1801, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

68. spacer 3.45|976651|33|LS483489|PILER-CR matches to MH844531 (Klebsiella phage GH-K3, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

69. spacer 3.45|976651|33|LS483489|PILER-CR matches to MG894052 (Klebsiella phage JY917, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

70. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_048143 (Klebsiella phage KpKT21phi1, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

71. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_049844 (Klebsiella phage 13, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

72. spacer 3.45|976651|33|LS483489|PILER-CR matches to MN395285 (Klebsiella phage PhiKpNIH-10, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

73. spacer 3.45|976651|33|LS483489|PILER-CR matches to MH633486 (Klebsiella phage NJS3, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

74. spacer 3.45|976651|33|LS483489|PILER-CR matches to MK618657 (Klebsiella phage Sanco, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

75. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_049842 (Klebsiella phage vB_KpnS_15-38_KLPPOU149, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

76. spacer 3.45|976651|33|LS483489|PILER-CR matches to LR757892 (Klebsiella phage vB_KpnS_2811 genome assembly, chromosome: 1) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

77. spacer 3.45|976651|33|LS483489|PILER-CR matches to MF415412 (Klebsiella phage KPN N141, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

78. spacer 3.45|976651|33|LS483489|PILER-CR matches to MF612072 (Klebsiella phage MezzoGao, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

79. spacer 3.45|976651|33|LS483489|PILER-CR matches to MK931445 (Klebsiella phage Shelby, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcataccgaacc	Protospacer
 .*. ******** *********** *** .**

80. spacer 3.45|976651|33|LS483489|PILER-CR matches to JF501022 (Klebsiella phage KP36, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

81. spacer 3.45|976651|33|LS483489|PILER-CR matches to MH445453 (Klebsiella phage NJS1, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

82. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_028760 (Klebsiella phage KLPN1, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

83. spacer 3.45|976651|33|LS483489|PILER-CR matches to MH633484 (Klebsiella phage TAH8, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

84. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_048043 (Klebsiella phage NJS2, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

85. spacer 3.45|976651|33|LS483489|PILER-CR matches to MK931443 (Klebsiella phage Sweeny, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

86. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_049838 (Klebsiella phage KL, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

87. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_048044 (Klebsiella phage NJR15, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

88. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_048126 (Klebsiella phage TSK1, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

89. spacer 3.45|976651|33|LS483489|PILER-CR matches to MK931444 (Klebsiella phage Skenny, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

90. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_028774 (Klebsiella phage Sushi, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

91. spacer 3.45|976651|33|LS483489|PILER-CR matches to NC_049840 (Klebsiella phage vB_KpnS_FZ10, complete genome) position: , mismatch: 8, identity: 0.758

gttttcgctcgcgctcgtccatcattccgcgcc	CRISPR spacer
tctcgcgctcgcggtcgtccatcatcccgaacc	Protospacer
 .*. ******** ***********.*** .**

92. spacer 3.3|975493|31|LS483489|CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 9, identity: 0.71

tttccaaacttttatatttctgtggacaata	CRISPR spacer
gaatatagcttttatatttctctggccaata	Protospacer
   .  *.************* *** *****

93. spacer 3.5|975614|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP049117 (Pantoea stewartii strain ZJ-FGZX1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

cagacagtaaaagtgaggcagcagggcggagc	CRISPR spacer
acagtaacaaaactgaggcagcagggcggggc	Protospacer
  ...*..**** ****************.**

94. spacer 3.5|975614|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP035035 (Pantoea ananatis strain NN08200 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cagacagtaaaagtgaggcagcagggcggagc	CRISPR spacer
acagtaacaaaactgaggcagcagggcggggc	Protospacer
  ...*..**** ****************.**

95. spacer 3.13|976103|32|LS483489|CRISPRCasFinder,CRT matches to MF919512 (Mycobacterium phage Klein, complete genome) position: , mismatch: 9, identity: 0.719

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
atcccggccgatgacgtgacggtgggtgatat	Protospacer
 ********** * **********..  * *

96. spacer 3.14|976164|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gtacagaaaaaagaggcgtcgcatgtggcgat	CRISPR spacer
tgtcggcgcaaagatgcgtggcatgtggcgat	Protospacer
   *.* . ***** **** ************

97. spacer 3.16|976286|32|LS483489|CRISPRCasFinder,CRT matches to AP013386 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C23-MedDCM-OCT-S37-C51) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

98. spacer 3.16|976286|32|LS483489|CRISPRCasFinder,CRT matches to GU943014 (Uncultured phage MedDCM-OCT-S04-C1161 genomic sequence) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

99. spacer 3.16|976286|32|LS483489|CRISPRCasFinder,CRT matches to AP014420 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C167, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

100. spacer 3.16|976286|32|LS483489|CRISPRCasFinder,CRT matches to GU943017 (Uncultured phage MedDCM-OCT-S04-C1227 genomic sequence) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

101. spacer 3.16|976286|32|LS483489|CRISPRCasFinder,CRT matches to AP014417 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S39-C59, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

102. spacer 3.16|976286|32|LS483489|CRISPRCasFinder,CRT matches to GU943022 (Uncultured phage MedDCM-OCT-S04-C890 genomic sequence) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

103. spacer 3.16|976286|32|LS483489|CRISPRCasFinder,CRT matches to GU943013 (Uncultured phage MedDCM-OCT-S04-C1035 genomic sequence) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

104. spacer 3.16|976286|32|LS483489|CRISPRCasFinder,CRT matches to AP014416 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S27-C110, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

105. spacer 3.23|976713|32|LS483489|CRISPRCasFinder,CRT matches to AP018319 (Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

ataatcaggtcgttaatattttttgtctgcgc	CRISPR spacer
aaaatcaggtgtttaatattttttgggttgat	Protospacer
* ********  *************  *  ..

106. spacer 3.26|976897|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ggagcgggacgacagcgaaccatccggaaaaa	CRISPR spacer
gacttgtgaccacagcgaacaatccggaaatc	Protospacer
*.  .* *** ********* *********

107. spacer 3.30|975735|33|LS483489|PILER-CR matches to NZ_CP010615 (Phaeobacter inhibens strain P92 plasmid pP92_e, complete sequence) position: , mismatch: 9, identity: 0.727

------gaattcctcgataacgatctgcaccaggttgaa	CRISPR spacer
atcagaaaa------gagaacgatcggcaccaggttgaa	Protospacer
      .**      ** ******* *************

108. spacer 3.30|975735|33|LS483489|PILER-CR matches to NZ_CP010634 (Phaeobacter inhibens strain P78 plasmid pP78_e, complete sequence) position: , mismatch: 9, identity: 0.727

------gaattcctcgataacgatctgcaccaggttgaa	CRISPR spacer
atcagaaaa------gagaacgatcggcaccaggttgaa	Protospacer
      .**      ** ******* *************

109. spacer 3.30|975735|33|LS483489|PILER-CR matches to NZ_CP010606 (Phaeobacter inhibens strain P83 plasmid pP83_g, complete sequence) position: , mismatch: 9, identity: 0.727

------gaattcctcgataacgatctgcaccaggttgaa	CRISPR spacer
atcagaaaa------gagaacgatcggcaccaggttgaa	Protospacer
      .**      ** ******* *************

110. spacer 3.30|975735|33|LS483489|PILER-CR matches to NZ_CP010774 (Phaeobacter piscinae strain P13 plasmid pP13_g, complete sequence) position: , mismatch: 9, identity: 0.727

------gaattcctcgataacgatctgcaccaggttgaa	CRISPR spacer
atcagaaaa------gagaacgatcggcaccaggttgaa	Protospacer
      .**      ** ******* *************

111. spacer 3.30|975735|33|LS483489|PILER-CR matches to NZ_CP010712 (Phaeobacter inhibens strain P66 plasmid pP66_g, complete sequence) position: , mismatch: 9, identity: 0.727

------gaattcctcgataacgatctgcaccaggttgaa	CRISPR spacer
atcagaaaa------gagaacgatcggcaccaggttgaa	Protospacer
      .**      ** ******* *************

112. spacer 2.1|959014|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to MK867354 (Synechococcus phage S-SCSM1, complete genome) position: , mismatch: 10, identity: 0.688

cgatttgtattgattaattttgtcaagattgt	CRISPR spacer
atacatgtaatgattaattttttcaagaacac	Protospacer
  *. **** *********** ****** ...

113. spacer 2.1|959014|32|LS483489|PILER-CR,CRISPRCasFinder,CRT matches to NC_031056 (Bacillus phage Deep Blue, complete genome) position: , mismatch: 10, identity: 0.688

cgatttgtattgattaattttgtcaagattgt	CRISPR spacer
ttattagtattgtttaattttgtcatttgaat	Protospacer
. *** ****** ************     .*

114. spacer 3.8|975797|32|LS483489|CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 10, identity: 0.688

ccgtatcgggtgtttaattttta--------cgtgagaga	CRISPR spacer
ccgtatcggatttttaatttttatcatttctc--------	Protospacer
*********.* ***********        *

115. spacer 3.13|976103|32|LS483489|CRISPRCasFinder,CRT matches to NZ_CP040821 (Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence) position: , mismatch: 10, identity: 0.688

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
agcccggccgaggccgtggcggagatcggcga	Protospacer
  ****************.*** **   . .*

116. spacer 3.13|976103|32|LS483489|CRISPRCasFinder,CRT matches to MN908686 (Microbacterium phage Zepp, complete genome) position: , mismatch: 10, identity: 0.688

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
atcccggccgaggacgtgccggtggtgatcga	Protospacer
 ************ **** *****. .   .*

117. spacer 3.13|976103|32|LS483489|CRISPRCasFinder,CRT matches to MT889377 (Microbacterium phage Zayuliv, complete genome) position: , mismatch: 10, identity: 0.688

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
atcccggccgaggacgtgccggtggtgatcga	Protospacer
 ************ **** *****. .   .*

118. spacer 3.39|976285|33|LS483489|PILER-CR matches to AP013386 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C23-MedDCM-OCT-S37-C51) position: , mismatch: 10, identity: 0.697

gcccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
caaatctatctgtaacatctgttatgtaattgc	Protospacer
     *..***** ***.**************.

119. spacer 3.39|976285|33|LS483489|PILER-CR matches to GU943014 (Uncultured phage MedDCM-OCT-S04-C1161 genomic sequence) position: , mismatch: 10, identity: 0.697

gcccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
caaatctatctgtaacatctgttatgtaattgc	Protospacer
     *..***** ***.**************.

120. spacer 3.39|976285|33|LS483489|PILER-CR matches to AP014420 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C167, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 10, identity: 0.697

gcccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
caaatctatctgtaacatctgttatgtaattgc	Protospacer
     *..***** ***.**************.

121. spacer 3.39|976285|33|LS483489|PILER-CR matches to GU943017 (Uncultured phage MedDCM-OCT-S04-C1227 genomic sequence) position: , mismatch: 10, identity: 0.697

gcccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
caaatctatctgtaacatctgttatgtaattgc	Protospacer
     *..***** ***.**************.

122. spacer 3.39|976285|33|LS483489|PILER-CR matches to AP014417 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S39-C59, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 10, identity: 0.697

gcccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
caaatctatctgtaacatctgttatgtaattgc	Protospacer
     *..***** ***.**************.

123. spacer 3.39|976285|33|LS483489|PILER-CR matches to GU943022 (Uncultured phage MedDCM-OCT-S04-C890 genomic sequence) position: , mismatch: 10, identity: 0.697

gcccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
caaatctatctgtaacatctgttatgtaattgc	Protospacer
     *..***** ***.**************.

124. spacer 3.39|976285|33|LS483489|PILER-CR matches to GU943013 (Uncultured phage MedDCM-OCT-S04-C1035 genomic sequence) position: , mismatch: 10, identity: 0.697

gcccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
caaatctatctgtaacatctgttatgtaattgc	Protospacer
     *..***** ***.**************.

125. spacer 3.39|976285|33|LS483489|PILER-CR matches to AP014416 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S27-C110, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 10, identity: 0.697

gcccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
caaatctatctgtaacatctgttatgtaattgc	Protospacer
     *..***** ***.**************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1141334 : 1148096

Enterobacteria_phage(85.71%)

capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ05477.1\|1141334_1141835_-	Uncharacterised protein	A0A2H4J2P5	uncultured_Caudovirales_phage	2.6e-39	60.6
SQJ05478.1\|1142294_1144628_-	bacteriophage P4 DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.0
SQJ05479.1\|1144642_1144963_-	putative prophage protein	NA	NA	NA	NA
SQJ05480.1\|1144959_1145187_-	bacteriophage protein	NA	NA	NA	NA
SQJ05481.1\|1145183_1145378_-	CI repressor	Q7M2A7	Enterobacteria_phage	1.9e-22	87.1
SQJ05482.1\|1145728_1145947_-	phage DNA binding protein	Q7M299	Enterobacteria_phage	2.4e-26	75.0
SQJ05483.1\|1146533_1147271_+\|capsid	bacteriophage capsid protein	Q7M2A2	Enterobacteria_phage	3.1e-81	65.7
SQJ05484.1\|1147267_1147513_+	phage transcriptional activator, Ogr/delta	Q7M294	Enterobacteria_phage	6.3e-31	76.5
SQJ05485.1\|1147529_1148096_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	4.8e-58	64.3

DBSCAN-SWA_2

1664471 : 1673643

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ09196.1\|1664471_1665419_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
SQJ09220.1\|1665402_1666134_+	putative permease transmembrane component	NA	NA	NA	NA
SQJ09227.1\|1666114_1666222_-	membrane protein	NA	NA	NA	NA
SQJ09251.1\|1666281_1667013_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
SQJ09265.1\|1667235_1668921_+	putative sensor kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
SQJ09307.1\|1668917_1669637_+	two-component system response regulator	NA	NA	NA	NA
SQJ09325.1\|1669683_1670151_+	Protein of uncharacterised function (DUF1456)	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
SQJ09332.1\|1670207_1670738_-	lipoprotein	NA	NA	NA	NA
SQJ09333.1\|1670909_1671368_-	lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
SQJ09334.1\|1671609_1673643_-\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1740800 : 1752290

Bacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ10062.1\|1740800_1742204_+	Colanic acid biosynthesis protein wcaM	A0A291LBB9	Klebsiella_phage	2.3e-21	26.5
SQJ10064.1\|1742355_1743306_+	udp-N-acetylglucosamine 4-epimerase	A0A1V0QG29	Shearwaterpox_virus	3.1e-09	26.0
SQJ10066.1\|1743578_1744472_+	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	3.6e-44	42.2
SQJ10183.1\|1744810_1745824_+	UDP-galactose-4-epimerase	A0A2K9L1R4	Tupanvirus	1.2e-88	50.2
SQJ10189.1\|1745845_1746862_+	glycosyltransferase	NA	NA	NA	NA
SQJ10197.1\|1746882_1748001_+	GDP-mannose 4,6-dehydratase	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	5.3e-133	65.3
SQJ10200.1\|1748003_1748969_+	GDP-fucose synthetase	D1LW79	Prochlorococcus_phage	1.9e-86	50.8
SQJ10203.1\|1748971_1749472_+	O-antigen biosynthesis protein	NA	NA	NA	NA
SQJ10206.1\|1749464_1750913_+	mannose-1-phosphate guanyltransferase	A0A1V0SH58	Hokovirus	1.6e-57	32.5
SQJ10217.1\|1750916_1752290_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.3e-32	27.5

DBSCAN-SWA_4

1864990 : 1876270

Burkholderia_phage(25.0%)

integrase

attL 1855234:1855247|attR 1873054:1873067

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1855234:1855247	attL	NA	NA	NA	NA
SQJ10970.1\|1864990_1866172_+	ATP-binding protein	C7BGE8	Burkholderia_phage	2.4e-35	26.9
SQJ10971.1\|1866172_1866919_+	Uncharacterised protein	NA	NA	NA	NA
SQJ10972.1\|1867020_1868277_-\|integrase	phage integrase	A0A077KET4	Ralstonia_phage	4.4e-80	41.8
SQJ10974.1\|1869033_1869453_+	umuDC operon protein-like protein	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
SQJ10976.1\|1869455_1869773_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.9e-48	91.3
SQJ10979.1\|1869756_1870725_+	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	6.5e-172	93.1
SQJ11016.1\|1871851_1873030_-	outer membrane protein S1	Q1MVN1	Enterobacteria_phage	8.6e-110	57.2
SQJ11019.1\|1873679_1873979_+	membrane protein	NA	NA	NA	NA
1873054:1873067	attR	NA	NA	NA	NA
SQJ11021.1\|1874070_1874766_+	metal-dependent phospho hydrolase	A0A1D6Y7U0	Golden_Marseillevirus	4.7e-07	28.2
SQJ11024.1\|1874839_1876270_+	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

1981301 : 2009320

Enterobacteria_phage(33.33%)

transposase,terminase,protease,integrase

attL 1976651:1976664|attR 2016181:2016194

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1976651:1976664	attL	NA	NA	NA	NA
SQJ11535.1\|1981301_1982381_-\|integrase	phage integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-101	52.9
SQJ11538.1\|1982377_1983649_-	exonuclease VIII	Q9QF34	Lambdoid_phage	3.8e-55	66.7
SQJ11542.1\|1984020_1984275_+	Uncharacterised protein	NA	NA	NA	NA
SQJ11739.1\|1984587_1984755_-	lytic enzyme	NA	NA	NA	NA
SQJ11812.1\|1985057_1985549_+\|terminase	terminase	Q9EYD0	Enterobacteria_phage	1.9e-42	56.2
SQJ11859.1\|1985535_1985715_+\|terminase	phage terminase large subunit	Q9EYD1	Enterobacteria_phage	2.7e-07	53.2
SQJ11861.1\|1985734_1986109_+\|terminase	phage terminase large subunit	Q8VNN7	Enterobacteria_phage	1.3e-59	82.9
SQJ11874.1\|1986101_1987706_+	Tail Fiber Protein	E5G6P0	Salmonella_phage	2.9e-76	48.9
SQJ11875.1\|1989724_1989847_+	Uncharacterised protein	NA	NA	NA	NA
SQJ11876.1\|1990295_1990910_-	disulfide bond formation protein	NA	NA	NA	NA
SQJ11877.1\|1990919_1991078_-	membrane protein	NA	NA	NA	NA
SQJ11878.1\|1991210_1992125_-	drug/metabolite transporter DMT permease	NA	NA	NA	NA
SQJ11879.1\|1992915_1993314_-	putative fimbriae; usher	NA	NA	NA	NA
SQJ11880.1\|1993457_1993661_+	error-prone repair: component of DNA polymerase V with UmuD'	I6RSM4	Salmonella_phage	1.5e-06	86.7
SQJ11881.1\|1993748_1994189_+\|transposase	transposase, Mutator family	NA	NA	NA	NA
SQJ11882.1\|1994949_1995150_+	Uncharacterised protein	NA	NA	NA	NA
SQJ11883.1\|1995279_1995588_+	acetyltransferase	NA	NA	NA	NA
SQJ11901.1\|1995828_1996305_-	Uncharacterised protein	NA	NA	NA	NA
SQJ11903.1\|1996436_1997030_-	protein ycgX	NA	NA	NA	NA
SQJ11906.1\|1997714_1998437_+	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
SQJ11909.1\|1998721_1998829_+	membrane protein	NA	NA	NA	NA
SQJ11912.1\|1998877_1999762_+	Serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	1.5e-58	51.4
SQJ11915.1\|1999780_1999972_-	putative secreted protein	NA	NA	NA	NA
SQJ11918.1\|2000082_2000310_-	conserved domain protein	NA	NA	NA	NA
SQJ11921.1\|2000437_2001064_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
SQJ11924.1\|2001264_2001981_-	rRNA (cytosine-C(5)-)-methyltransferase RsmF	NA	NA	NA	NA
SQJ11928.1\|2001956_2004590_-	mce-related protein	NA	NA	NA	NA
SQJ11931.1\|2004558_2005842_-	Paraquat-inducible protein A	NA	NA	NA	NA
SQJ11934.1\|2005898_2006468_+	GAF domain-containing protein	NA	NA	NA	NA
SQJ11939.1\|2006565_2007252_+	ProP effector	NA	NA	NA	NA
SQJ11940.1\|2007271_2009320_+\|protease	Tail-specific protease precursor	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
2016181:2016194	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2639918 : 2689820

Salmonella_phage(49.12%)

terminase,tail,transposase,head,lysis,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ15849.1\|2639918_2640158_+	virulence protein	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
SQJ15852.1\|2640375_2640540_-\|transposase	transposase	NA	NA	NA	NA
SQJ15855.1\|2641037_2641847_+	cytolethal distending toxin subunit CdtB	A5LH53	Enterobacteria_phage	2.1e-62	50.0
SQJ15858.1\|2641919_2642297_+	Protein of uncharacterised function (DUF1353)	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
SQJ15861.1\|2642444_2642987_-	Predicted lysozyme (DUF847)	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
SQJ15865.1\|2643170_2643899_-	Pertussis toxin, subunit 1 subfamily	A0A0U2KD26	Escherichia_phage	1.2e-61	52.5
SQJ15868.1\|2643915_2644329_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	5.5e-19	37.7
SQJ15871.1\|2645371_2646496_-	bacteriophage protein	NA	NA	NA	NA
SQJ15873.1\|2646941_2647154_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7
SQJ15876.1\|2647407_2648079_+	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.8e-80	61.3
SQJ15880.1\|2648071_2649340_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.4e-245	99.1
SQJ15883.1\|2649342_2649762_-	Error-prone repair protein UmuD	A0A1W6JNS2	Morganella_phage	3.8e-36	59.8
SQJ15886.1\|2650003_2651308_-	Uncharacterised protein	I6R0Q9	Salmonella_phage	2.1e-133	58.7
SQJ15889.1\|2651318_2652278_-	Uncharacterised protein	H6WRW5	Salmonella_phage	9.0e-182	98.7
SQJ15890.1\|2652286_2655007_-\|tail	tail protein	S4TTF5	Salmonella_phage	0.0e+00	98.5
SQJ15894.1\|2655006_2655405_-	Uncharacterised protein	S4TR39	Salmonella_phage	8.8e-75	100.0
SQJ15938.1\|2655411_2655996_-	Uncharacterised protein	S4TND4	Salmonella_phage	1.5e-107	100.0
SQJ15945.1\|2655995_2656250_-	Uncharacterised protein	S4TSP7	Salmonella_phage	5.9e-40	98.8
SQJ15946.1\|2656437_2656590_-	Uncharacterised protein	NA	NA	NA	NA
SQJ15959.1\|2656755_2656968_+	Uncharacterised protein	NA	NA	NA	NA
SQJ15965.1\|2657006_2657318_-	Uncharacterised protein	S4TNM6	Salmonella_phage	1.7e-36	80.2
SQJ15975.1\|2657363_2660573_-\|tail	tail length tape measure protein	K7PKG1	Enterobacteria_phage	1.6e-299	65.6
SQJ15984.1\|2660686_2661142_-	Uncharacterised protein	A0A0S2SY43	Pseudomonas_phage	8.1e-08	40.8
SQJ15994.1\|2661195_2661486_-\|tail	phage tail protein	S4TND7	Salmonella_phage	1.6e-46	100.0
SQJ16006.1\|2661497_2661869_-\|tail	phage tail protein	S4TSQ0	Salmonella_phage	3.4e-60	92.6
SQJ16010.1\|2661896_2662601_-\|tail	tail protein	K7PHL2	Enterobacterial_phage	1.2e-93	75.2
SQJ16019.1\|2662658_2663006_-	Protein of uncharacterised function (DUF3168)	S4TTG3	Salmonella_phage	8.3e-45	77.9
SQJ16028.1\|2663002_2663452_-	phage protein, HK97 gp10 family	S4TR46	Salmonella_phage	1.0e-71	94.6
SQJ16035.1\|2663448_2663787_-\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	6.6e-39	70.5
SQJ16042.1\|2663796_2664123_-	phage protein	K7PKT4	Enterobacteria_phage	5.2e-49	85.2
SQJ16051.1\|2664122_2664347_-	Uncharacterised protein	K7PHI6	Enterobacteria_phage	2.5e-10	66.0
SQJ16056.1\|2664390_2665608_-\|capsid	capsid protein	K7PM57	Enterobacteria_phage	6.0e-199	88.9
SQJ16064.1\|2665617_2666466_-	peptidase	K7PH05	Enterobacteria_phage	4.4e-132	88.2
SQJ16070.1\|2666479_2667784_-	histone H1	K7PJU5	Enterobacteria_phage	5.1e-220	86.9
SQJ16077.1\|2667783_2669526_-\|terminase	phage terminase, large subunit	A0A0U2C138	Paracoccus_phage	5.9e-139	44.4
SQJ16084.1\|2669479_2669944_-\|terminase	terminase	Q9B019	Phage_GMSE-1	1.3e-48	62.1
SQJ16092.1\|2670076_2670421_-	Gp74	K7P7P6	Enterobacteria_phage	3.9e-47	73.9
SQJ16100.1\|2670488_2670998_-	Uncharacterised protein	NA	NA	NA	NA
SQJ16109.1\|2671171_2671654_-\|lysis	bacteriophage lysis protein	A0A0M4RD57	Salmonella_phage	2.2e-56	80.5
SQJ16117.1\|2671650_2672265_-	bacteriophage protein	Q8HA86	Salmonella_phage	3.6e-107	92.6
SQJ16126.1\|2672264_2672546_-	prophage membrane protein	K7PKN9	Enterobacterial_phage	9.7e-36	80.6
SQJ16134.1\|2672532_2672922_-	prophage membrane protein	K7PHB9	Enterobacterial_phage	2.8e-41	72.5
SQJ16142.1\|2673878_2674631_-	antitermination protein	A0A192Y5X6	Salmonella_phage	1.8e-137	94.8
SQJ16148.1\|2674644_2675634_-	putative cytoplasmic protein	A0A1C9IHZ5	Salmonella_phage	8.3e-191	97.9
SQJ16150.1\|2675641_2676502_-	phage protein	A0A192Y6F8	Salmonella_phage	4.6e-161	98.6
SQJ16152.1\|2676518_2676908_-	crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	2.7e-60	86.0
SQJ16154.1\|2676904_2677558_-	DNA adenine methylase	A5LH72	Enterobacteria_phage	3.2e-114	88.5
SQJ16156.1\|2677557_2678040_-	phage protein	Q8HA95	Salmonella_phage	2.3e-85	98.1
SQJ16158.1\|2678041_2679016_-	Replication protein O	U5P0A0	Shigella_phage	4.3e-115	78.7
SQJ16160.1\|2679012_2679237_-	phage protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
SQJ16162.1\|2680372_2680927_-	putative prophage product	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
SQJ16164.1\|2680955_2681180_-	DNA-binding protein	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
SQJ16166.1\|2681277_2681973_+	regulatory protein	Q8HAA0	Salmonella_phage	3.2e-128	100.0
SQJ16168.1\|2682307_2682505_-	Uncharacterised protein	NA	NA	NA	NA
SQJ16169.1\|2682881_2683415_+	putative prophage protein	A0A192Y6G0	Salmonella_phage	1.9e-96	99.4
SQJ16174.1\|2683472_2684300_+	bacteriophage protein	Q8HAA2	Salmonella_phage	4.1e-151	98.5
SQJ16195.1\|2684436_2684976_+	phage protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
SQJ16197.1\|2685271_2685577_+	conserved hypothetical bacteriophage protein	A0A192Y7N1	Salmonella_phage	1.5e-18	76.4
SQJ16199.1\|2685569_2685797_+	Uncharacterised protein	K7P6F8	Enterobacteria_phage	6.0e-20	72.3
SQJ16201.1\|2685796_2686270_+	DNA N-4 cytosine methyltransferase M.NgoMXV	H9C170	Pectobacterium_phage	6.6e-69	80.3
SQJ16202.1\|2686273_2687038_+	Eaa protein	A0A220NQU1	Salmonella_phage	9.7e-38	64.8
SQJ16204.1\|2687087_2687324_+	excisionase	NA	NA	NA	NA
SQJ16206.1\|2687313_2688456_+	Integrase	O21929	Phage_21	6.9e-173	80.0
SQJ16208.1\|2688569_2689820_-	isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7

DBSCAN-SWA_7

2983823 : 2994460

Salmonella_phage(81.82%)

integrase,tail

attL 2978981:2978993|attR 2994466:2994478

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2978981:2978993	attL	NA	NA	NA	NA
SQJ17442.1\|2983823_2984084_-	late control-like protein	Q53ZE7	Salmonella_virus	1.3e-23	75.7
SQJ17445.1\|2984289_2985246_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	7.5e-104	92.6
SQJ17448.1\|2985242_2985629_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.2e-47	98.0
SQJ17451.1\|2985625_2987749_-	Bacteriophage replication gene A protein (GPA)	A0A1S6L028	Salmonella_phage	0.0e+00	96.5
SQJ17454.1\|2987690_2988563_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.3e-114	76.6
SQJ17457.1\|2988531_2988774_-	gp91	NA	NA	NA	NA
SQJ17565.1\|2988851_2989079_-	C4-type zinc finger protein, DksA/TraR family	A0A1S6L007	Salmonella_phage	2.4e-32	88.0
SQJ17570.1\|2989071_2989290_-	putative 8.8 kDa protein in GpA 5'region	A0A1S6L021	Salmonella_phage	9.2e-26	93.8
SQJ17572.1\|2989357_2989699_-	Uncharacterised protein	A0A1S6L019	Salmonella_phage	4.8e-53	95.6
SQJ17576.1\|2989870_2990380_-	regulatory protein cII	A0A1S6L008	Salmonella_phage	2.9e-78	88.2
SQJ17579.1\|2990412_2990634_-	Uncharacterised protein	NA	NA	NA	NA
SQJ17580.1\|2990729_2991320_+	repressor protein	A0A1S6KZZ7	Salmonella_phage	6.1e-40	40.3
SQJ17581.1\|2991347_2993336_+	Predicted ATP-binding protein involved in virulence	NA	NA	NA	NA
SQJ17582.1\|2993416_2994460_+\|integrase	probable bacteriophage integrase	A0A218M4I3	Erwinia_phage	5.5e-100	54.6
2994466:2994478	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3346129 : 3405210

Bacillus_phage(21.43%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ19974.1\|3346129_3347047_+\|protease	Putative stomatin/prohibitin-family membraneprotease subunit YbbK	NA	NA	NA	NA
SQJ19976.1\|3347043_3347496_+\|protease	Putative activity regulator of membraneprotease YbbK	NA	NA	NA	NA
SQJ19978.1\|3347496_3347913_-	copper efflux regulator	NA	NA	NA	NA
SQJ19981.1\|3348022_3350524_+	Lead cadmium zinc and mercury transporting ATPase	A0A218MNH6	uncultured_virus	6.7e-112	37.2
SQJ19983.1\|3350676_3351513_+	Secreted protein	NA	NA	NA	NA
SQJ19986.1\|3352585_3353065_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
SQJ19988.1\|3353181_3354834_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
SQJ19990.1\|3355006_3356227_+	fosmidomycin resistance protein	NA	NA	NA	NA
SQJ19992.1\|3356238_3356364_-	Uncharacterised protein	NA	NA	NA	NA
SQJ19994.1\|3356441_3358118_+	transport protein	NA	NA	NA	NA
SQJ19996.1\|3358166_3359471_-	inosine/guanosine kinase	NA	NA	NA	NA
SQJ19999.1\|3359623_3360595_+	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	6.6e-15	27.4
SQJ20001.1\|3360591_3361554_-	ferrochelatase	NA	NA	NA	NA
SQJ20003.1\|3361738_3362383_-	adenylate kinase	NA	NA	NA	NA
SQJ20006.1\|3362624_3364499_-	chaperone protein HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.7e-115	36.9
SQJ20008.1\|3364609_3365215_-	recombination protein RecR	NA	NA	NA	NA
SQJ20010.1\|3365214_3365544_-	DNA-binding protein, YbaB/EbfC family	NA	NA	NA	NA
SQJ20013.1\|3367631_3368183_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.0e-28	45.2
SQJ20015.1\|3368335_3368713_-	Inner membrane protein YbaN	NA	NA	NA	NA
SQJ20017.1\|3368793_3369309_+	Primosomal replication protein N prime prime	NA	NA	NA	NA
SQJ20019.1\|3369322_3369490_+	Putative inner membrane protein	NA	NA	NA	NA
SQJ20022.1\|3369559_3370483_+\|transposase	ISNCY transposase	Q2A0A7	Sodalis_phage	6.2e-63	51.2
SQJ20024.1\|3370524_3373887_-	integral membrane protein AefA	NA	NA	NA	NA
SQJ20026.1\|3374005_3374659_-	potential acrAB operon repressor	NA	NA	NA	NA
SQJ20028.1\|3374800_3375994_+	acriflavin resistance protein A	NA	NA	NA	NA
SQJ20031.1\|3376016_3379166_+	acriflavin resistance protein B	NA	NA	NA	NA
SQJ20033.1\|3379661_3380036_+	Hha toxicity attenuator	NA	NA	NA	NA
SQJ20046.1\|3380063_3380282_+	hemolysin expression modulating protein	NA	NA	NA	NA
SQJ20049.1\|3380460_3381012_+	maltose O-acetyltransferase	NA	NA	NA	NA
SQJ20072.1\|3381129_3381600_+	Putative inner membrane protein	NA	NA	NA	NA
SQJ20087.1\|3381798_3382062_-	50S ribosomal protein L31	NA	NA	NA	NA
SQJ20088.1\|3382286_3383837_+	Uncharacterized protein ylaB	NA	NA	NA	NA
SQJ20089.1\|3384145_3384457_+	methylated-DNA-[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
SQJ20090.1\|3384489_3385059_-	lipoprotein	NA	NA	NA	NA
SQJ20091.1\|3385273_3386134_+	acyl-CoA thioesterase II	NA	NA	NA	NA
SQJ20092.1\|3386233_3387520_-	ammonium transporter	NA	NA	NA	NA
SQJ20093.1\|3387551_3387890_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
SQJ20094.1\|3388102_3389884_-	Multidrug resistance-like ATP-binding protein mdlB	W8CYL7	Bacillus_phage	5.4e-39	26.7
SQJ20095.1\|3389876_3391649_-	ABC transporter ATP-binding membrane protein	W8CYL7	Bacillus_phage	4.7e-51	29.8
SQJ20096.1\|3391689_3392148_-	transcriptional regulator	NA	NA	NA	NA
SQJ20097.1\|3392260_3393316_+	lyase	NA	NA	NA	NA
SQJ20098.1\|3393365_3394184_-	HMP-PP phosphatase	NA	NA	NA	NA
SQJ20099.1\|3394283_3395984_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
SQJ20100.1\|3396048_3396744_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.2e-87	68.4
SQJ20101.1\|3396851_3397214_-	4-hydroxybenzoyl-CoA thio esterase family activesite	NA	NA	NA	NA
SQJ20102.1\|3397354_3397729_-	competence protein ComEA	NA	NA	NA	NA
SQJ20109.1\|3397879_3398986_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQJ20110.1\|3398970_3399753_-	peptidyl-prolyl cis-trans isomerase D	NA	NA	NA	NA
SQJ20111.1\|3400043_3400316_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.9e-20	58.4
SQJ20112.1\|3400524_3401598_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	1.2e-118	60.2
SQJ20113.1\|3401632_3402880_-\|protease	Lon protease	A0A0R6PGP8	Moraxella_phage	2.3e-89	44.2
SQJ20114.1\|3403065_3403707_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.1e-56	52.4
SQJ20115.1\|3403700_3404336_-\|protease	ATP-dependent clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.1e-38	55.2
SQJ20116.1\|3404586_3405210_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	63.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483489

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection