CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483492	Serratia rubidaea strain NCTC10848 genome assembly, chromosome: 1	3 crisprs	cas3,DEDDh,csa3,DinG	0	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483492_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483492_1

2895941-2896327

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT

6 spacers

The CRISPR arrays of LS483492_1

>merge|LS483492|1|2895941-2896327|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCTGCCTGTACGGCAGTGAACTACCAGGGGAGTTCCCTTGACAATCTTAATCATTTCTAAGCCGCCTGTACGGCAGTGACTCTTTGCCTTCTGATTCCCTGCTACTTTTGATTTTCTAAGCTGCCTGTACGGCAGTGAACTTCTTCCACGCTGCACGGGACTCTCGAGCACTTTTCTAAGCTGCCTGTACGGCAGTGAACCAGAAGTCAACGATGTTCCGACTGTTCCGCCATTTCTAAGCTGCCTGTACGGCAGTGAACACGTGTGGACGGACGGCATCGGTAACACGCACTTTCTAAGCTGCCTGTACGGCAGTGAACATCAGGAGCAAGCGGTTGCCGCTGCCGGTATGTTTCTAAGCTGCCTGTACGGCAGTGAAC

>LS483492|1|1|2895941-2896327|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACCAGGGGAGTTCCCTTGACAATCTTAATCA
TTTCTAAGCCGCCTGTACGGCAGTGACT	CTTTGCCTTCTGATTCCCTGCTACTTTTGAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCTTCCACGCTGCACGGGACTCTCGAGCACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAGAAGTCAACGATGTTCCGACTGTTCCGCCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGTGTGGACGGACGGCATCGGTAACACGCAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATCAGGAGCAAGCGGTTGCCGCTGCCGGTATG
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>LS483492|1|1|2895941-2896327|CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACCAGGGGAGTTCCCTTGACAATCTTAATCA
TTTCTAAGCCGCCTGTACGGCAGTGACT	CTTTGCCTTCTGATTCCCTGCTACTTTTGAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCTTCCACGCTGCACGGGACTCTCGAGCACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAGAAGTCAACGATGTTCCGACTGTTCCGCCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGTGTGGACGGACGGCATCGGTAACACGCAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATCAGGAGCAAGCGGTTGCCGCTGCCGGTATG
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>LS483492|1|1|2895941-2896327|CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACCAGGGGAGTTCCCTTGACAATCTTAATCA
TTTCTAAGCCGCCTGTACGGCAGTGACT	CTTTGCCTTCTGATTCCCTGCTACTTTTGAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCTTCCACGCTGCACGGGACTCTCGAGCACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CAGAAGTCAACGATGTTCCGACTGTTCCGCCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ACGTGTGGACGGACGGCATCGGTAACACGCAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATCAGGAGCAAGCGGTTGCCGCTGCCGGTATG
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483492.1\|SQJ20936.1\|2897036_2897672_-\|Major-phosphate-irrepressible-acid-phosphatase-precursor	unknown	unknown	gnl\|CDD\|239491
LS483492.1\|SQJ20914.1\|2887302_2888793_+\|Aldehyde-dehydrogenase-PuuC	unknown	unknown	gnl\|CDD\|182108
LS483492.1\|SQJ20942.1\|2900252_2900675_-\|DNA-polymerase-V-subunit-UmuD	unknown	unknown	gnl\|CDD\|182350
LS483492.1\|SQJ20953.1\|2903820_2904933_+\|tRNA-specific-2-thiouridylase-mnmA	unknown	unknown	gnl\|CDD\|234664
LS483492.1\|SQJ20944.1\|2900900_2902154_-\|Isocitrate-dehydrogenase-[NADP]	unknown	unknown	gnl\|CDD\|180792
LS483492.1\|SQJ20925.1\|2892938_2893187_+\|Bacterial-protein-of-uncharacterised-function-(DUF883)	unknown	unknown	gnl\|CDD\|283241
LS483492.1\|SQJ20923.1\|2891908_2892532_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226233
LS483492.1\|SQJ20949.1\|2902932_2903268_+\|Uncharacterized-protein-conserved-in-bacteria,-putative-lipoprotein	unknown	unknown	gnl\|CDD\|226868
LS483492.1\|SQJ20946.1\|2902256_2902913_+\|Ribosomal-large-subunit-pseudouridine-synthase-E	unknown	unknown	gnl\|CDD\|183115
LS483492.1\|SQJ20917.1\|2888804_2890085_+\|Gamma-glutamylputrescine-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
LS483492.1\|SQJ20927.1\|2893241_2893361_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483492.1\|SQJ20940.1\|2898983_2900102_-\|DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607
LS483492.1\|SQJ20938.1\|2898202_2898472_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483492.1\|SQJ20921.1\|2891156_2891582_-\|Universal-stress-protein-A	unknown	unknown	gnl\|CDD\|185073
LS483492.1\|SQJ20932.1\|2895624_2895831_-\|Microcin-H47-immunity-protein-mchI	unknown	unknown	unknown
LS483492.1\|SQJ20951.1\|2903277_2903724_+\|Phosphatase-nudJ	unknown	unknown	gnl\|CDD\|239647
LS483492.1\|SQJ20928.1\|2893619_2894264_+\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|226790
LS483492.1\|SQJ20935.1\|2896675_2896966_+\|Bor-protein	unknown	unknown	gnl\|CDD\|368828
LS483492.1\|SQJ20930.1\|2894260_2895526_+\|Probable-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|273906
LS483492.1\|SQJ20919.1\|2890122_2890878_-\|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG	unknown	unknown	gnl\|CDD\|379263

Protein	Function_ID	Function_description	E-value
LS483492.1\|SQJ20936.1\|2897036_2897672_-\|Major-phosphate-irrepressible-acid-phosphatase-precursor	gnl\|CDD\|239491	cd03397, PAP2_acid_phosphatase, PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.	9.85429e-79
LS483492.1\|SQJ20925.1\|2892938_2893187_+\|Bacterial-protein-of-uncharacterised-function-(DUF883)	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	1.71825e-05
LS483492.1\|SQJ20942.1\|2900252_2900675_-\|DNA-polymerase-V-subunit-UmuD	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	6.60957e-57
LS483492.1\|SQJ20944.1\|2900900_2902154_-\|Isocitrate-dehydrogenase-[NADP]	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
LS483492.1\|SQJ20940.1\|2898983_2900102_-\|DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
LS483492.1\|SQJ20923.1\|2891908_2892532_+\|transcriptional-regulator	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	6.47849e-14
LS483492.1\|SQJ20949.1\|2902932_2903268_+\|Uncharacterized-protein-conserved-in-bacteria,-putative-lipoprotein	gnl\|CDD\|226868	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown].	2.95679e-33
LS483492.1\|SQJ20935.1\|2896675_2896966_+\|Bor-protein	gnl\|CDD\|368828	pfam06291, Lambda_Bor, Bor protein. This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the Escherichia coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	6.38932e-27
LS483492.1\|SQJ20946.1\|2902256_2902913_+\|Ribosomal-large-subunit-pseudouridine-synthase-E	gnl\|CDD\|183115	PRK11394, PRK11394, 23S rRNA pseudouridine(2457) synthase RluE.	4.65315e-106
LS483492.1\|SQJ20917.1\|2888804_2890085_+\|Gamma-glutamylputrescine-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.16531e-77
LS483492.1\|SQJ20951.1\|2903277_2903724_+\|Phosphatase-nudJ	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	8.39067e-62
LS483492.1\|SQJ20953.1\|2903820_2904933_+\|tRNA-specific-2-thiouridylase-mnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
LS483492.1\|SQJ20921.1\|2891156_2891582_-\|Universal-stress-protein-A	gnl\|CDD\|185073	PRK15118, PRK15118, universal stress protein UspA.	1.43152e-30
LS483492.1\|SQJ20914.1\|2887302_2888793_+\|Aldehyde-dehydrogenase-PuuC	gnl\|CDD\|182108	PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional.	0
LS483492.1\|SQJ20928.1\|2893619_2894264_+\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|226790	COG4340, COG4340, Uncharacterized protein conserved in bacteria [Function unknown].	5.90335e-71
LS483492.1\|SQJ20930.1\|2894260_2895526_+\|Probable-cysteine-desulfurase	gnl\|CDD\|273906	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. [Unknown function, Enzymes of unknown specificity].	4.41368e-171
LS483492.1\|SQJ20919.1\|2890122_2890878_-\|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG	gnl\|CDD\|379263	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.	2.02924e-75

>LS483492.1|SQJ20932.1|2895624_2895831_-|Microcin-H47-immunity-protein-mchI
MEVLNRTSAVLSLPLTILCVSFSSLTIMGEHNSLVDVFLSVIVFFGFLNLFRIAGKLIAWFNGNANQA
>LS483492.1|SQJ20930.1|2894260_2895526_+|Probable-cysteine-desulfurase
MTFTPERARSQFGALSQHYQDKPAIFFDGPGGSQVSHSVLEKMTGYLGSYNANLGGHYFSSQMTEQVMHNARASVRALLNAPSPDNIVFGMNMTSLTFHLSRIISRDWQPGDEIIVTALDHYANVSSWQQAAEDKQAIVHHIPLRPEDCTLDTERLCAQINDKTRLVAVTHASNVTGSVVDIRAITAAAQRVGAQVYVDAVHYAPHNLIDVQALSCDFLVCSAYKFFGPHIGMAYIAPQWLQRLRPYKVEPATDIGPGRFETGTQSFEGLAGVTAAIDYLAQWGTPGAPLRQRLQESFAAYHQHEEDLCRYFLQRLRQLEGARLYGYPEPDSTRRTPTFALTFKNFSPEQIAMLLGRHNICAGSGHFYAQGLIRQLNLQEHGGVLRIGMMHYNTRQEIDRLFEVLEDALAEADSPAAVDGR
>LS483492.1|SQJ20928.1|2893619_2894264_+|Uncharacterized-protein-conserved-in-bacteria
MLPGHENVVSMTSLSRQATQQLMPSFSDLPHTQHADGKYRLRRYSVITFRNNQVEDIGQRNFVQSDEFNHFQGNVVRHFEPIDSAVLQSEGMAEMCALFADVNGLPDGAKIEIHQMRVVAIYNETPVAPEGIHQDGFEHIAMASINRHNIVGGEVMLYDDNRSMPFFRRVLADSETVLLADNKLWHYFAPITAVAPGEEGHLDLLILTARREHA
>LS483492.1|SQJ20927.1|2893241_2893361_+|Uncharacterised-protein
MESLDYLAYLPVAIALNLVAIVAVAGISLWKIWRRKLRA
>LS483492.1|SQJ20925.1|2892938_2893187_+|Bacterial-protein-of-uncharacterised-function-(DUF883)
MFGKAEDKAKEVAGAAQEAFGEATGSPEHEIKGAARKYASQASYAVRDGADVVRHRVESNPLAGVAVAAAVGVVFGYLLGRK
>LS483492.1|SQJ20923.1|2891908_2892532_+|transcriptional-regulator
MSQVIYRIEGSIIFSPEDTGLYRHNQADSIVAISSAAARLFTLLIKNKGHIVERETILEKVWDEYGLQASNNNLNQCLSILRRIIKNMGIDKNIIETIPKVGLRISHVIQIEEINLHPPMPPVPGDPPTPDKRSRKKIKKKLFYSALLVGLLLMFSLFFNIFHLYNSYQSRPASLSLLNSTRGQAALCAVPPAETPRLSTVSLRTPH
>LS483492.1|SQJ20921.1|2891156_2891582_-|Universal-stress-protein-A
MAYQHIVVATDLGENATQLLQKGAELASALRAKLSLIYIDIHHTGYYAELGIGAYNYTDQKFSERAASILESFRNQTPHPIAEVIIGRGELSEELNNAAQAKGFDLIIFGHHHDLWSRLFSATRQAINTLQIDVLVIPIDN
>LS483492.1|SQJ20919.1|2890122_2890878_-|3-oxoacyl-[acyl-carrier-protein]-reductase-FabG
MRFDNKVVIITGAGNGMGEAAARRFAAEGATVVLADWAIDAVDAVAASLPAGKAHAVHIDVSDAEAVEAMMNEIAARFGHIDVLLNNAGVHVAGSVLETSVADWRRIAGVDIDGVVFCSKFALPYLLKSKGCIVNTASVSGLGGDWGAAYYCAAKGAVVNLTRAMALDHGGEGVRVNAVCPSLVKTNMTNGWPQEIRDKFNERIALGRAAEPEEVAAVMAFLASEDASFINGANIPVDGGATASDGQPKIV
>LS483492.1|SQJ20917.1|2888804_2890085_+|Gamma-glutamylputrescine-oxidoreductase
MTEHVKSYYAASANPHQPYPQLNESIECDVCIVGGGYTGLSSALFLVEAGYDVVVLESARIGFGASGRNGGQLVNSYSRDIDVIEQRYGADSARLLGSMMFEGAEIIRSRIKRYAIECDYRPGGIFAALNNKQYHMLIEQKGHWERYGNTQLELLDADRIRQEVASDRYVGALLDHSGGHIHPLNLALGEAEAIRLQGGRIFEQSAVTNIRHGDPALVSTAHGQVSARYVIVAGNAYLGDKLEPRLAKRSMPCGTQVVTTEPLAPEVAQSLIPQNYCVEDCNYLLDYYRITADHRLLYGGGVVYGARDPDDIDNLIRPKLLKTFPQLKGVRIDYRWTGNFLLTLSRMPQFGRLENNVYYMQGYSGHGVTCTHLAGKLIAELLRGDAERFDAFAKLPHLPFFGGRNLQIPFTAIGAAYYTLRDRIGV
>LS483492.1|SQJ20914.1|2887302_2888793_+|Aldehyde-dehydrogenase-PuuC
MDFHHLQYWQQRAQALTIENRLFINGRYQPAAEGGTFTVEDPAGQRELTQAARAGSADVGLAVSAARAAFERGDWSRAAPSRRKAVLLALAEQIEQHAETLALLETLDTGKPIRHSLRDDIPGAARCLRWYAEAIDKVYGEIAPTGADALALIEREPVGVVGAITPWNFPLLLACWKLGPALATGNSVVLKPSEKSPLSAIYLGQLAQQAGLPDGVLNIISGFGHDAGKALALHPDVDALTFTGSTLVAKQLMVYAGESNMKRVWLEAGGKSANIIFADCPDIDKAARAAAAGIFYNQGQVCIAGTRLLVEESIQQPFLQALHKHAAAFTPGNPLDPDTQMGTLIDSGHSAKVADFIKQGLDQGATLFLDGRGSGPHDAYLGPTVLTQVDNAMQVAREEIFGPVLAVTPFNGEQQAIELANDSDYGLGAALWTRDLSRAHRLARQLRAGSVFINNYNDGDMTVPFGGYKQSGNGRDKSLHALDKFTELKTTWISLE
>LS483492.1|SQJ20935.1|2896675_2896966_+|Bor-protein
MKKLLAAVVLAMTVTGCAQQTFTMKHETVAVPKQTTTHHFFVSGIGQKKAIDAAAVCGGADKVVRTEVQQTFPNILLGIVTFGIYTPREARIYCAQ
>LS483492.1|SQJ20936.1|2897036_2897672_-|Major-phosphate-irrepressible-acid-phosphatase-precursor
MGFLTPETAPDSLQILPPPPAENTTAFLNDKAAYETGKTLKDAQRQALAASDADYKNISAAFSAAFGEEISQEKTPALYALLQGVLQDSHDYAMRAAKDHYMRVRPFVVYKDSTCTPEKDKSMAKTGSYPSGHASFGWATALVLAEINPARETEILKRGYDFGQSRVVCGAHWQSDVDNGRLMGAAVVAALHSNQGFTDALAKAKAEFGKR
>LS483492.1|SQJ20938.1|2898202_2898472_-|Uncharacterised-protein
MKKLAFYKFIIGWGTANLAYAFAFLWLFIVWVIASHTVFRHEDYFHFKKILFNIITYGFNTWLDFAALYSTIFALLWALISVYRSKSVS
>LS483492.1|SQJ20940.1|2898983_2900102_-|DNA-polymerase-V-subunit-UmuC
MGVPYFKVKHPFERAGGIAFSSNYELYADMSMRVMSVLEEVAPRVEIYSIDESFMDLTGVRHCVDLATFGRQVRAKVLRDTGLTVGIGIAQTKTLAKLANHAAKKWPGTGGVVDLSSVGRQRKLMGLVPVAEVWGIGRRIAKKLQVMGIDTALQLADASTAMIRKNFSVVIEKTVRELRGEPCLELEEFAPTKQQILCSRSFGERITEYDDMRQAICMYATRAAEKLRGEHQYCMHISAWLKSSPFAINEQYYGNSASIKLSTPTQDTRDIIAAAMRCFDAIWQPGHRYQKAGVMLQDFFSHGVAQLGLFDEYQPQHNSERLMSVLDRINNSGRAKLWFAGQGMYQQWSMKREMLSPAYTTRVSDLPQARVC
>LS483492.1|SQJ20942.1|2900252_2900675_-|DNA-polymerase-V-subunit-UmuD
MTLFFPTPNPVKLELPLFSDKVPAGFPSPVADYVSSRIDLNEYCISHPNATYFLYATGDSMLEAGITEGSMLVVDRSIAPAHGDIVIACIAGEFTVKRLCLHPRAQLEPMNAKYDPIVLHDDGDSLDVVGVVVSSITRLK
>LS483492.1|SQJ20944.1|2900900_2902154_-|Isocitrate-dehydrogenase-[NADP]
MESKVVVPAEGKKITVDAQGKLVVPHNPIIPFIEGDGIGVDVTPAMINVVNAAVDKAYHGERKISWMEIYTGEKSTHVYGKDVWLPDETLDLIRDYRVAIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENAEDIYAGIEWKAGSAEADKVIKFLRDEMGVQKIRFPEQCGIGVKPCSEEGTKRLVRAAIEYAITNDRDSVTLVHKGNIMKFTEGAFKDWGYELAREEFGGELIDGGPWLKIKNPNTGKEIVVKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSVILSAEMMLRHLGWFEAADLIVKGMEGAIAAKTVTYDFERLMEGAKLLKCSEFGDAIVEHM
>LS483492.1|SQJ20946.1|2902256_2902913_+|Ribosomal-large-subunit-pseudouridine-synthase-E
MRLSSASTIDMNKFPVKKHQVKRFSRPNSAKRPVPPGPRRVVLFNKPFDVLPQFTDEAGRSTLKEFIPFNDVYAAGRLDRDSEGLLVLTNDGKLQAQLTQPGKRTGKVYYVQVEGSPQESDLAQLRSGVTLKDGPTLPAGVERVAEPAWLWPRTPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHIGFPTLRLIRYSMGNLSLGDLQPGEWKTTDSP
>LS483492.1|SQJ20949.1|2902932_2903268_+|Uncharacterized-protein-conserved-in-bacteria,-putative-lipoprotein
MKTLGTLLLTTLLCAAGAQAASFDCRKAASKDEQAICASRSLSDKDVEMATKYQFLRGLFAMGFRGEMQDRQNSWLAKRKQCGSDVSCLSNSYRQRIGELDAIYNKIDRPL
>LS483492.1|SQJ20951.1|2903277_2903724_+|Phosphatase-nudJ
MFKPHVTVANVVHAAGKFLIVEETVNHKALWNQPAGHLEADETLLQAAERELWEETGIRAAPQSFLKMHQWIAPDGTPFLRFCFVVELPAIVPTAPQDSDIDRCLWLSADEILHAPNLRSPLVAESLRCYRQPERYPLSLIGSFNWPY
>LS483492.1|SQJ20953.1|2903820_2904933_+|tRNA-specific-2-thiouridylase-mnmA
MSDNSQKKVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEEYCSAATDLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRQDVDGKSRLLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLPAQPGPIMTVDGQTIGQHQGLMYHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLIVAQGHDHPRLMSLGLIAQQLHWVDRQPLTAPLRCTVKTRYRQQDLPCTITPIDDQRIEVRFDEPVAAVTPGQSAVFYQGEICLGGGIIEQRLPLEEG

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Crispr_ID: LS483492_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483492_2

4444718-4444866

Orphan

I-F

Consensus_repeat	Method
TTTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR
TTTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of LS483492_2

>merge|LS483492|2|4444718-4444866|PILER-CR,CRISPRCasFinder
TTCTCTAAGCTGCCTGTACGGCAGTGAACATCGCTGGTATGAACCGCCGGTTTCATTCCCTTTTCTAAGCTGCCTGTACGGCAGTGAACGCTGCCCCTGGGTAGATGCGGTATCGCCATATTTTCTAAGCTGCCTGTACGGCAGTGAAC

>LS483492|2|2|4444718-4444866|PILER-CR
TTCTCTAAGCTGCCTGTACGGCAGTGAAC	ATCGCTGGTATGAACCGCCGGTTTCATTCCC
TTTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTGCCCCTGGGTAGATGCGGTATCGCCATA
TTTTCTAAGCTGCCTGTACGGCAGTGAAC

>LS483492|2|2|4444718-4444866|CRISPRCasFinder
TTCTCTAAGCTGCCTGTACGGCAGTGAAC	ATCGCTGGTATGAACCGCCGGTTTCATTCCC
TTTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTGCCCCTGGGTAGATGCGGTATCGCCATA
TTTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483492.1\|SQJ30279.1\|4441150_4441711_+\|Ribose-1,5-bisphosphate-phosphokinase-PhnN	unknown	unknown	gnl\|CDD\|236648
LS483492.1\|SQJ30303.1\|4450502_4451042_-\|Putative-lipid-carrier-protein	unknown	unknown	gnl\|CDD\|225696
LS483492.1\|SQJ30288.1\|4443844_4444396_+\|Protein-of-uncharacterised-function-(DUF2778)	unknown	unknown	gnl\|CDD\|378506
LS483492.1\|SQJ30301.1\|4450005_4450509_-\|Predicted-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
LS483492.1\|SQJ30275.1\|4439310_4440015_+\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|227118
LS483492.1\|SQJ30290.1\|4445509_4446214_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483492.1\|SQJ30273.1\|4438506_4439295_+\|Glutathione-import-ATP-binding-protein-GsiA	unknown	unknown	gnl\|CDD\|183280
LS483492.1\|SQJ30268.1\|4436565_4437657_+\|Bacterial-phosphonate-metabolism-protein-(PhnI)	unknown	unknown	gnl\|CDD\|226153
LS483492.1\|SQJ30271.1\|4437649_4438510_+\|Phosphonate-metabolism-protein-PhnJ	unknown	unknown	gnl\|CDD\|226154
LS483492.1\|SQJ30281.1\|4441701_4442499_+\|carbon-phosphorus-lyase-complex-accessory-protein	unknown	unknown	gnl\|CDD\|183052
LS483492.1\|SQJ30306.1\|4452283_4453162_+\|putative-protease	unknown	unknown	gnl\|CDD\|237968
LS483492.1\|SQJ30299.1\|4449725_4450019_+\|GIY-YIG-nuclease-superfamily-protein	unknown	unknown	gnl\|CDD\|178979
LS483492.1\|SQJ30283.1\|4442446_4443088_-\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|187560
LS483492.1\|SQJ30292.1\|4446934_4447561_-\|Leucine-efflux-protein	unknown	unknown	gnl\|CDD\|224199
LS483492.1\|SQJ30296.1\|4448672_4448894_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483492.1\|SQJ30294.1\|4448065_4448554_+\|Leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|224439
LS483492.1\|SQJ30305.1\|4451276_4452272_+\|Uncharacterized-protease-yhbU-precursor	unknown	unknown	gnl\|CDD\|223896
LS483492.1\|SQJ30277.1\|4440014_4441151_+\|phosphonate-metabolism-protein-PhnM	unknown	unknown	gnl\|CDD\|237967
LS483492.1\|SQJ30310.1\|4453598_4454738_-\|daunorubicin-resistance-ABC-transporter-membrane-protein	unknown	unknown	gnl\|CDD\|378925
LS483492.1\|SQJ30286.1\|4443165_4443600_-\|Uncharacterized-protein-conserved-in-bacteria	unknown	unknown	gnl\|CDD\|235127

Protein	Function_ID	Function_description	E-value
LS483492.1\|SQJ30279.1\|4441150_4441711_+\|Ribose-1,5-bisphosphate-phosphokinase-PhnN	gnl\|CDD\|236648	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.	8.28128e-94
LS483492.1\|SQJ30303.1\|4450502_4451042_-\|Putative-lipid-carrier-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	7.05139e-71
LS483492.1\|SQJ30288.1\|4443844_4444396_+\|Protein-of-uncharacterised-function-(DUF2778)	gnl\|CDD\|378506	pfam10908, DUF2778, Protein of unknown function (DUF2778). This is a bacterial family of uncharacterized proteins.	1.22771e-43
LS483492.1\|SQJ30301.1\|4450005_4450509_-\|Predicted-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	8.76114e-54
LS483492.1\|SQJ30275.1\|4439310_4440015_+\|Lipoprotein-releasing-system-ATP-binding-protein-LolD	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.33701e-141
LS483492.1\|SQJ30283.1\|4442446_4443088_-\|Uncharacterised-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.21108e-67
LS483492.1\|SQJ30273.1\|4438506_4439295_+\|Glutathione-import-ATP-binding-protein-GsiA	gnl\|CDD\|183280	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional.	3.70085e-180
LS483492.1\|SQJ30268.1\|4436565_4437657_+\|Bacterial-phosphonate-metabolism-protein-(PhnI)	gnl\|CDD\|226153	COG3626, PhnI, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
LS483492.1\|SQJ30271.1\|4437649_4438510_+\|Phosphonate-metabolism-protein-PhnJ	gnl\|CDD\|226154	COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
LS483492.1\|SQJ30281.1\|4441701_4442499_+\|carbon-phosphorus-lyase-complex-accessory-protein	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	2.19228e-156
LS483492.1\|SQJ30306.1\|4452283_4453162_+\|putative-protease	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
LS483492.1\|SQJ30299.1\|4449725_4450019_+\|GIY-YIG-nuclease-superfamily-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	6.11462e-41
LS483492.1\|SQJ30292.1\|4446934_4447561_-\|Leucine-efflux-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	7.42648e-28
LS483492.1\|SQJ30310.1\|4453598_4454738_-\|daunorubicin-resistance-ABC-transporter-membrane-protein	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.1565e-24
LS483492.1\|SQJ30294.1\|4448065_4448554_+\|Leucine-responsive-regulatory-protein	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.49399e-42
LS483492.1\|SQJ30305.1\|4451276_4452272_+\|Uncharacterized-protease-yhbU-precursor	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.47266e-117
LS483492.1\|SQJ30277.1\|4440014_4441151_+\|phosphonate-metabolism-protein-PhnM	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
LS483492.1\|SQJ30286.1\|4443165_4443600_-\|Uncharacterized-protein-conserved-in-bacteria	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	3.67786e-89

>LS483492.1|SQJ30288.1|4443844_4444396_+|Protein-of-uncharacterised-function-(DUF2778)
MARLYQSRMGNMALYGKFIVNDADYSPLTIYGIGTFMAFSGDGNYRNAPGCGMIPNEGPIPSGKYWIVDRPTGGIREPIATWFSDVLNRNLRNIPTGKNEWFGLFRDDGKIDDHTWINGVKRGNFRLHPGTISYGCITLKHHSDFAAIRSALLRTKTINIRNMRLRACGIIDVISNGECKVSG
>LS483492.1|SQJ30286.1|4443165_4443600_-|Uncharacterized-protein-conserved-in-bacteria
MEQSEQQQHIIRFLSKQHVLTLCAGNGVEMWCANCFYVFDAERMALWLMTEPHTRHGQLMQQHAEVVGTIAPKPKSIALIKGVQYRAEARILSGDEEQQARARYCKRFPVAKAMPATLWQLSLQEVKMTDNVLGFGTKLFWARS
>LS483492.1|SQJ30283.1|4442446_4443088_-|Uncharacterised-protein
MARVLITGATGLVGGELLRLLLADRRVTAITAPSRRPLPPHDKLTNPVGDDLFALLTELDQPVDAVFCCLGTTRQQAGSDGNFHYVDYTLVVESALTGRRLGAQHCLAVSAMGASPHSTFLYNRIKGEMEQALREQGWQRLTLVRPSMLLGKRAAPRLLERVAQPLFRLLPGRWKSVAARDVAQTLLEQAFSPGDGVRVLESDRLQHGERLAH
>LS483492.1|SQJ30281.1|4441701_4442499_+|carbon-phosphorus-lyase-complex-accessory-protein
MQLTFLGTGGAQQVPAFGCECAICQRARREPARRRRACSAMLDYQGETTLIDAGLTSLERRFSAGQIQRFLLTHYHMDHVQGLFHLRWGCGSAIPVYGPPDEQGCDDLFKHPGILDFQPPLAPFVSVTLGGLRITPLPLIHSKITHGYLIQSADRTLAYLTDTVGLPPDTLRFLQGVRLDLLVLDCSLPPQAQAPRNHNDLTRALEIQQRLLPQRTLLTHISHHLDAWLLTHPLPPGLELAYDGLCIDVSAPDAPRAAADRTPAP
>LS483492.1|SQJ30279.1|4441150_4441711_+|Ribose-1,5-bisphosphate-phosphokinase-PhnN
MAQLIYLMGASGSGKDSLLAALRNAADNAPLVAHRYITRPAQAGCENHVALSEREFLRRRANGLFALDWQAHHTRYALGIEVDLWLLQGIDVVINGSRAYLPYARQRYGAQLLPLCLQVEPAVLRRRLERRGREDSGQIEQRLARAAAYSVPSDCLRLDNNGELSDTLAALLQLLTALRREETPCN
>LS483492.1|SQJ30277.1|4440014_4441151_+|phosphonate-metabolism-protein-PhnM
MIINNVKLVLDDQVVNGSLEMGDGVIRSFADGYSRLPQALDGEGGWLLPGLIELHTDNLDKFFMPRPNVDWPAHSAMSSHDALMVACGITTVLDAVAIGDVRDGGHRLENLQKMIDAVIHSQRAGVNRAEHRLHLRCELPNAGTLPLFEQLMDKPGVSLVSLMDHSPGQRQFASRAKYREYYQGKYNLSDAAMDEYEQQQVALSARWATPNRQAIAERCRERGIALASHDDATAAHVAESCALGSAIAEFPTTEEAARASHRQGLQVLMGAPNIVRGGSHSGNVAAHQLAAQGVLDILSSDYYPASLLDAAFLLAADVRNGYDLPQSVAMVTRNPARALGLADRGTIAEGLRADLVLARAHGEHIYVQHVWRQGRQVF
>LS483492.1|SQJ30275.1|4439310_4440015_+|Lipoprotein-releasing-system-ATP-binding-protein-LolD
MTIKIRVEHLSKTFVLHQQHGTRLPVLHDASLTVSAGECVVLHGHSGSGKSTLLRSLYANYLPDSGHIWLDHQGEWIDMAQAEARQILAVRRRTLGWVSQFLRVIPRISALEVVMQPLLELGVAHDECRERASALLSRLNVPQRLWGLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDARNSAAVVALVEQARRRGAAIVGIFHDDQVRAQVADRLHIMQAPQALETP
>LS483492.1|SQJ30273.1|4438506_4439295_+|Glutathione-import-ATP-binding-protein-GsiA
MSTTPLHDAPLLSVERLTHLYAPGKGFSDVSFDIYSGEVLGIVGESGSGKTTLLKSISARLAPQQGRILYRPQAGQEQDLYAMAESARRRLLRTDWGVVHQHPLDGLRPQVSAGGNIGERLMAVGQRHYGDIRRQAGQWLEDVEIPLSRLDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRTLVVEMRLAAVIVTHDLGVARLLAHRLLVMKQGEVVESGLTDRVLDDPHHPYTQLLVSSVLS
>LS483492.1|SQJ30271.1|4437649_4438510_+|Phosphonate-metabolism-protein-PhnJ
MSNVLSGYNPGYLDEQTKRMIRRAILKGVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVVGDADVLKVIDQGADDTTNAVSIRRFFQRVAGVATTERTVEATLIQTRHRIPETPLREDQILIYQVPIPEPLRFIEPRETETRKMHALEEYGVMQVKLYEDIARYGHIATTYAYPVKVNDRYVMDPSPIPKFDNPKMHMMPALQLFGAGREKRIYALPPYTKVVSLDFDDHPFSVQQWEQPCALCGSRSSYLDEVVLDDQGNRMFVCSDTDYCRQQLASSTETPRP
>LS483492.1|SQJ30268.1|4436565_4437657_+|Bacterial-phosphonate-metabolism-protein-(PhnI)
MYVAVKGGEKAIEAAHRLQEQLRRGDPAQPALTAAQVEQQLGLAVDRVMTEGGVYDRELAALAIKQASGDLVEAIFLLRAYRTTLPRLAVSEPLLTEQMRLERRISAIYKDLPGGQLLGPTYDYTHRLLDFALLADGGAPDATPQLADDAPATGCPHVFSLLSRQQLAQAEQDDGSTPADITRTPPVYPCPRSARLQQLVRGDEGFLLALGYSTQRGYGRNHPFAGEIRSGYVTVEIVPEELGFAIDIGEILLTECEMVNGFVAPEQQPPHFTRGYGLVFGRAERKAMAMALVDRALQKDEYAEDGDSPAQDEEFVLSHADNVEAAGFVSHLKLPHYVDFQAELELLQRLRQRGEPTQETPHE
>LS483492.1|SQJ30290.1|4445509_4446214_+|Uncharacterised-protein
MSKRSDIIDGAEASSAPYGLVYTEVIGLIDLGHAQGTDIRNLMRTIDSGKSSSEEYYRVSYSQSMRDPTKTIKMGKFITWRIKHGRSYYERQSIALAMMMSLSLKFEGLQASFPVSLVTDSGFSGEDLISNLLGFYRAVSLQNPFGMLRPVSKAEALKRWDHYGKIGSWKNETFKPILFPDPKRFPHATPRRGELPSFMKTVRPWSDFRSGIVKIATANGSYMDSARNGVLPYA
>LS483492.1|SQJ30292.1|4446934_4447561_-|Leucine-efflux-protein
MLGTAQIISYAAALGLAAAVPGPGMTALVARSVSGGAVTGFTMLTGLILGDLIYLSTAVFGLAVIAHTYTSLFTLINWAAACYLFFLAWQFWRYQPQAVNIDQKATRRELTSAWLSGLTITLGNPKTIAFYLAILPLVISLDRVSLQVWGTMLVPLTMSVLLAVGAIFILAAIKIRRFLTSASSQRILFRTTGVIMVLAAFGMVMKSL
>LS483492.1|SQJ30294.1|4448065_4448554_+|Leucine-responsive-regulatory-protein
MPLDMTEMKILRLLQDDARVTNQALAEKIGMSASPCWRKVRKLEEEEVIQGYRAVLDRKKIGLGVMVFIRVAIDSHSETEAKKFEEEVTALEDVVACYSIGGDADFLLQVVAPDLDSYADFAMSVVRRLPGIKEMQSMFVLKEIKPLVSYPIKKTAQTKSGQ
>LS483492.1|SQJ30296.1|4448672_4448894_-|Uncharacterised-protein
MKRVIAIIVGTAIGIVLIWLAYPYISDWLVGPVHGEDQMSANFVLLLVGLGVGCVVGSLVGGLAYSRLKKRMR
>LS483492.1|SQJ30299.1|4449725_4450019_+|GIY-YIG-nuclease-superfamily-protein
MAETTTWHLYMLRLPSGMLYTGITTDVARRLAQHQAGKGAKALRGKGELQLAFHCAVGDRSLALRLEYRIKQLSKVQKERLVSHPPLSLDYLLVKNG
>LS483492.1|SQJ30301.1|4450005_4450509_-|Predicted-acetyltransferase
MLIRVEIPVDAAGIDALLRSAFGRDDEADLVRQLREDGLLTLGVVATDDEGGVVGYAAFSPVDVEGEDRQWVGLAPLAVEERLRRQGLGEKLVYEGLDALNEFSYAAVVVLGEPAYYSRFGFKPAAEFGLSCRWPGCEQAFQVYPLAQDALDGVNGAVEYAAPFNRF
>LS483492.1|SQJ30303.1|4450502_4451042_-|Putative-lipid-carrier-protein
MKEWMTVLEKLRSRIVRQGPSLLRVPLKLTPFALQRQLLEQVLGWQFRQALADGDLEFLESRWLKIEVRDLALQWFMTVENDRLVVRQHAQADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELEAMPAPLRIGLLQLAEFVEAGLQEGAEPSSRVVAPC
>LS483492.1|SQJ30305.1|4451276_4452272_+|Uncharacterized-protease-yhbU-precursor
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFSEKKLQEAVEYVHRHGRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYQRHFAVHRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGMESRLNDVLIDRYQEGENAGYPTLCKGRYLVDDVRYHALEEPTSLNTLALLPELLAANIASVKIEGRQRSPAYVSQVARVWRQAIDRCIADPAGYQPDAGWMAALGAMSEGTQTTLGAYHRKWQ
>LS483492.1|SQJ30306.1|4452283_4453162_+|putative-protease
MKYALGPVLYYWPKTETESFYQQAMHSSADIIYLGESVCTKRREMKVGDWLALAKTVAQSGKQVVLSTLALLQAPSELNELKRYVENGEFLIEANDLGTVNMAAERGLPFVAGHALNCYNAYTLRLLHKQGMTRWCMPVELSRDWLGKVLEQCGELGFRRGFEVEVLGYGHLPLAYSARCFTARSENRGKDECETCCIKYPQGRAMRSQEDQQVFVLNGIQTMSGYCYNLGNELSGMQELVDIVRLSPQGVETLTMLEQFRANENAQQPLALAGSSDCNGYWRRVAGLELVQ
>LS483492.1|SQJ30310.1|4453598_4454738_-|daunorubicin-resistance-ABC-transporter-membrane-protein
MKSYWQTFSRVLIGMLERPMWLMLILSLCVMSLVYANRSVWDLPVGVIDQDHSSASRELIRQLDATSKIAIKTYDSLDQAQRDLGWRELFAVIIMPVDLEKKILHGENIVVPVYGDATNRLANGQIQQDVVTAYQQLLNQYNTSLLLRSGFSERQAQIILTPIQGQTLDVFNPGISFAAIVFPGLLVMLLQHSLLIASVRVSIALKSAPSGKPSIPVYLGGLSALLPIWLFLSIVLFVLWPWVLGYRQTANIAEVLLLTFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPIFYLSGTIWPLQAMPGWVRAISYCIPSTWATKAIAGVNQMGMSLNEVGNDVLMLLLLGAVYTVIGIGVGLVHNSVALRSLFRKRRA

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Crispr_ID: LS483492_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483492_3

4453190-4453402

Orphan

I-E

Consensus_repeat	Method
GCGGTTTATCCCCGCTCGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTCGCGCGGGGAACAC	PILER-CR

3 spacers

The CRISPR arrays of LS483492_3

>merge|LS483492|3|4453190-4453402|CRISPRCasFinder,PILER-CR
TAGATTGATCCCCGCTCACGCGGGGAACACGATGATTTCGTCATGATTGGTGACTCCCTCGCCGGTTTACCCCCGCTCACGCGGGGAACACGTCATGTTGACGAATCCGCACTCGATCGCCCGCGGTTTATCCCCGCTCGCGCGGGGAACACCGTAATAACAGCCAGTAATAACAGATATGAGGCGGTTTATCCCCGCTCGCGCGGGGAACAC

>LS483492|3|3|4453190-4453402|CRISPRCasFinder
TAGATTGATCCCCGCTCACGCGGGGAACAC	GATGATTTCGTCATGATTGGTGACTCCCTCG
CCGGTTTACCCCCGCTCACGCGGGGAACAC	GTCATGTTGACGAATCCGCACTCGATCGCCC
GCGGTTTATCCCCGCTCGCGCGGGGAACAC	CGTAATAACAGCCAGTAATAACAGATATGAG
GCGGTTTATCCCCGCTCGCGCGGGGAACAC

>LS483492|3|3|4453252-4453402|PILER-CR
CGGTTTACCCCCGCTCACGCGGGGAACAC	GTCATGTTGACGAATCCGCACTCGATCGCCCG
CGGTTTATCCCCGCTCGCGCGGGGAACAC	CGTAATAACAGCCAGTAATAACAGATATGAGG
CGGTTTATCCCCGCTCGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483492.1\|SQJ30343.1\|4459669_4460536_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|375319
LS483492.1\|SQJ30303.1\|4450502_4451042_-\|Putative-lipid-carrier-protein	unknown	unknown	gnl\|CDD\|225696
LS483492.1\|SQJ30347.1\|4464185_4465070_-\|Lipoprotein-NlpI-precursor	unknown	unknown	gnl\|CDD\|236875
LS483492.1\|SQJ30288.1\|4443844_4444396_+\|Protein-of-uncharacterised-function-(DUF2778)	unknown	unknown	gnl\|CDD\|378506
LS483492.1\|SQJ30301.1\|4450005_4450509_-\|Predicted-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
LS483492.1\|SQJ30305.1\|4451276_4452272_+\|Uncharacterized-protease-yhbU-precursor	unknown	unknown	gnl\|CDD\|223896
LS483492.1\|SQJ30290.1\|4445509_4446214_+\|Uncharacterised-protein	unknown	unknown	unknown
LS483492.1\|SQJ30345.1\|4460797_4462009_-\|putative-inner-membrane-protein	unknown	unknown	gnl\|CDD\|236845
LS483492.1\|SQJ30294.1\|4448065_4448554_+\|Leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|224439
LS483492.1\|SQJ30306.1\|4452283_4453162_+\|putative-protease	unknown	unknown	gnl\|CDD\|237968
LS483492.1\|SQJ30299.1\|4449725_4450019_+\|GIY-YIG-nuclease-superfamily-protein	unknown	unknown	gnl\|CDD\|178979
LS483492.1\|SQJ30344.1\|4460558_4460798_-\|Predicted-transporter-component	unknown	unknown	gnl\|CDD\|236822
LS483492.1\|SQJ30292.1\|4446934_4447561_-\|Leucine-efflux-protein	unknown	unknown	gnl\|CDD\|224199
LS483492.1\|SQJ30310.1\|4453598_4454738_-\|daunorubicin-resistance-ABC-transporter-membrane-protein	unknown	unknown	gnl\|CDD\|378925
LS483492.1\|SQJ30314.1\|4455870_4456842_-\|putative-efflux-pump-membrane-fusion-protein	unknown	unknown	gnl\|CDD\|235136
LS483492.1\|SQJ30296.1\|4448672_4448894_-\|Uncharacterised-protein	unknown	unknown	unknown
LS483492.1\|SQJ30342.1\|4458108_4459548_-\|High-copy-suppressor-of-rspA	unknown	unknown	gnl\|CDD\|340879
LS483492.1\|SQJ30346.1\|4462139_4463996_-\|Cold-shock-DEAD-box-protein-A	unknown	unknown	gnl\|CDD\|236941
LS483492.1\|SQJ30312.1\|4454734_4455889_-\|ABC-2-family-transporter-protein	unknown	unknown	gnl\|CDD\|378925
LS483492.1\|SQJ30319.1\|4457052_4458066_+\|Limonene-1,2-monooxygenase	unknown	unknown	gnl\|CDD\|182505

Protein	Function_ID	Function_description	E-value
LS483492.1\|SQJ30343.1\|4459669_4460536_+\|Uncharacterised-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	1.94897e-48
LS483492.1\|SQJ30303.1\|4450502_4451042_-\|Putative-lipid-carrier-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	7.05139e-71
LS483492.1\|SQJ30347.1\|4464185_4465070_-\|Lipoprotein-NlpI-precursor	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
LS483492.1\|SQJ30288.1\|4443844_4444396_+\|Protein-of-uncharacterised-function-(DUF2778)	gnl\|CDD\|378506	pfam10908, DUF2778, Protein of unknown function (DUF2778). This is a bacterial family of uncharacterized proteins.	1.22771e-43
LS483492.1\|SQJ30301.1\|4450005_4450509_-\|Predicted-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	8.76114e-54
LS483492.1\|SQJ30314.1\|4455870_4456842_-\|putative-efflux-pump-membrane-fusion-protein	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.32571e-38
LS483492.1\|SQJ30305.1\|4451276_4452272_+\|Uncharacterized-protease-yhbU-precursor	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.47266e-117
LS483492.1\|SQJ30294.1\|4448065_4448554_+\|Leucine-responsive-regulatory-protein	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.49399e-42
LS483492.1\|SQJ30306.1\|4452283_4453162_+\|putative-protease	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
LS483492.1\|SQJ30299.1\|4449725_4450019_+\|GIY-YIG-nuclease-superfamily-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	6.11462e-41
LS483492.1\|SQJ30344.1\|4460558_4460798_-\|Predicted-transporter-component	gnl\|CDD\|236822	PRK11018, PRK11018, putative sulfurtransferase YedF.	3.31176e-50
LS483492.1\|SQJ30292.1\|4446934_4447561_-\|Leucine-efflux-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	7.42648e-28
LS483492.1\|SQJ30310.1\|4453598_4454738_-\|daunorubicin-resistance-ABC-transporter-membrane-protein	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.1565e-24
LS483492.1\|SQJ30342.1\|4458108_4459548_-\|High-copy-suppressor-of-rspA	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.68721e-39
LS483492.1\|SQJ30346.1\|4462139_4463996_-\|Cold-shock-DEAD-box-protein-A	gnl\|CDD\|236941	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.	0
LS483492.1\|SQJ30312.1\|4454734_4455889_-\|ABC-2-family-transporter-protein	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.29885e-19
LS483492.1\|SQJ30345.1\|4460797_4462009_-\|putative-inner-membrane-protein	gnl\|CDD\|236845	PRK11099, PRK11099, putative inner membrane protein; Provisional.	0
LS483492.1\|SQJ30319.1\|4457052_4458066_+\|Limonene-1,2-monooxygenase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0

>LS483492.1|SQJ30306.1|4452283_4453162_+|putative-protease
MKYALGPVLYYWPKTETESFYQQAMHSSADIIYLGESVCTKRREMKVGDWLALAKTVAQSGKQVVLSTLALLQAPSELNELKRYVENGEFLIEANDLGTVNMAAERGLPFVAGHALNCYNAYTLRLLHKQGMTRWCMPVELSRDWLGKVLEQCGELGFRRGFEVEVLGYGHLPLAYSARCFTARSENRGKDECETCCIKYPQGRAMRSQEDQQVFVLNGIQTMSGYCYNLGNELSGMQELVDIVRLSPQGVETLTMLEQFRANENAQQPLALAGSSDCNGYWRRVAGLELVQ
>LS483492.1|SQJ30305.1|4451276_4452272_+|Uncharacterized-protease-yhbU-precursor
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFSEKKLQEAVEYVHRHGRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYQRHFAVHRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGMESRLNDVLIDRYQEGENAGYPTLCKGRYLVDDVRYHALEEPTSLNTLALLPELLAANIASVKIEGRQRSPAYVSQVARVWRQAIDRCIADPAGYQPDAGWMAALGAMSEGTQTTLGAYHRKWQ
>LS483492.1|SQJ30303.1|4450502_4451042_-|Putative-lipid-carrier-protein
MKEWMTVLEKLRSRIVRQGPSLLRVPLKLTPFALQRQLLEQVLGWQFRQALADGDLEFLESRWLKIEVRDLALQWFMTVENDRLVVRQHAQADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELEAMPAPLRIGLLQLAEFVEAGLQEGAEPSSRVVAPC
>LS483492.1|SQJ30301.1|4450005_4450509_-|Predicted-acetyltransferase
MLIRVEIPVDAAGIDALLRSAFGRDDEADLVRQLREDGLLTLGVVATDDEGGVVGYAAFSPVDVEGEDRQWVGLAPLAVEERLRRQGLGEKLVYEGLDALNEFSYAAVVVLGEPAYYSRFGFKPAAEFGLSCRWPGCEQAFQVYPLAQDALDGVNGAVEYAAPFNRF
>LS483492.1|SQJ30299.1|4449725_4450019_+|GIY-YIG-nuclease-superfamily-protein
MAETTTWHLYMLRLPSGMLYTGITTDVARRLAQHQAGKGAKALRGKGELQLAFHCAVGDRSLALRLEYRIKQLSKVQKERLVSHPPLSLDYLLVKNG
>LS483492.1|SQJ30296.1|4448672_4448894_-|Uncharacterised-protein
MKRVIAIIVGTAIGIVLIWLAYPYISDWLVGPVHGEDQMSANFVLLLVGLGVGCVVGSLVGGLAYSRLKKRMR
>LS483492.1|SQJ30294.1|4448065_4448554_+|Leucine-responsive-regulatory-protein
MPLDMTEMKILRLLQDDARVTNQALAEKIGMSASPCWRKVRKLEEEEVIQGYRAVLDRKKIGLGVMVFIRVAIDSHSETEAKKFEEEVTALEDVVACYSIGGDADFLLQVVAPDLDSYADFAMSVVRRLPGIKEMQSMFVLKEIKPLVSYPIKKTAQTKSGQ
>LS483492.1|SQJ30292.1|4446934_4447561_-|Leucine-efflux-protein
MLGTAQIISYAAALGLAAAVPGPGMTALVARSVSGGAVTGFTMLTGLILGDLIYLSTAVFGLAVIAHTYTSLFTLINWAAACYLFFLAWQFWRYQPQAVNIDQKATRRELTSAWLSGLTITLGNPKTIAFYLAILPLVISLDRVSLQVWGTMLVPLTMSVLLAVGAIFILAAIKIRRFLTSASSQRILFRTTGVIMVLAAFGMVMKSL
>LS483492.1|SQJ30290.1|4445509_4446214_+|Uncharacterised-protein
MSKRSDIIDGAEASSAPYGLVYTEVIGLIDLGHAQGTDIRNLMRTIDSGKSSSEEYYRVSYSQSMRDPTKTIKMGKFITWRIKHGRSYYERQSIALAMMMSLSLKFEGLQASFPVSLVTDSGFSGEDLISNLLGFYRAVSLQNPFGMLRPVSKAEALKRWDHYGKIGSWKNETFKPILFPDPKRFPHATPRRGELPSFMKTVRPWSDFRSGIVKIATANGSYMDSARNGVLPYA
>LS483492.1|SQJ30288.1|4443844_4444396_+|Protein-of-uncharacterised-function-(DUF2778)
MARLYQSRMGNMALYGKFIVNDADYSPLTIYGIGTFMAFSGDGNYRNAPGCGMIPNEGPIPSGKYWIVDRPTGGIREPIATWFSDVLNRNLRNIPTGKNEWFGLFRDDGKIDDHTWINGVKRGNFRLHPGTISYGCITLKHHSDFAAIRSALLRTKTINIRNMRLRACGIIDVISNGECKVSG
>LS483492.1|SQJ30310.1|4453598_4454738_-|daunorubicin-resistance-ABC-transporter-membrane-protein
MKSYWQTFSRVLIGMLERPMWLMLILSLCVMSLVYANRSVWDLPVGVIDQDHSSASRELIRQLDATSKIAIKTYDSLDQAQRDLGWRELFAVIIMPVDLEKKILHGENIVVPVYGDATNRLANGQIQQDVVTAYQQLLNQYNTSLLLRSGFSERQAQIILTPIQGQTLDVFNPGISFAAIVFPGLLVMLLQHSLLIASVRVSIALKSAPSGKPSIPVYLGGLSALLPIWLFLSIVLFVLWPWVLGYRQTANIAEVLLLTFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPIFYLSGTIWPLQAMPGWVRAISYCIPSTWATKAIAGVNQMGMSLNEVGNDVLMLLLLGAVYTVIGIGVGLVHNSVALRSLFRKRRA
>LS483492.1|SQJ30312.1|4454734_4455889_-|ABC-2-family-transporter-protein
MAMERVRAGWRCFSHAFSRECRVAFRSPVIHWLGWLFPLILFGLISSNFSEGTLLNLPVSVVDNDHSPLSKSLVRKLDAGSHAHVEAHDGGLSESLRRLRSAQDYALLYVPPDLEANALAGKQPSIVLYYNALFYGAGLYSTQDFSGLITETNGSYRSIIAASMGKTLPPLADVTLNYGSLFNASGSYIYYQQFAATIHLLQLFVVTCMIYVMARSKSLLSARPFSLALLGKLAPYTISFTTLLMIEIAALVGIFDARVSGNPLFMLLIGFFYVAAAQSIGLLLFTFTGSAITAYSLIGILVSIAMTYSGMAVPELSMPLPARIISNIEPLTHALYAMFDVFLRQVPARAIFGVCALLLVYPLVTAFLVRNRLPKRLAKDEGAL
>LS483492.1|SQJ30314.1|4455870_4456842_-|putative-efflux-pump-membrane-fusion-protein
MNKKTLFTLLLVVIAIAMAVLFRSHNQDLLLQGEVDAPEVIVASKAKGRVVERLIERGDDVKAGQVMITLDSPELLAQLRSAQATRDEAKAQLDQSLHGTREENIRSLRASLAQAQAELRNAQHDYDRNRSVAAKGYISKSELDSSRRSRDTAYQQVQDAKAKLDEGINGDRIELRQQYAAALRAAEENLLEVQAQADDLQVKAPVDGEVGPIPAEVGELLNASSPLVTLIRLPDAYFVFNLREDILANIRKGDKVKLRVPALKDKVIDAEVRYIAPLGDYATKRATRATGDFDLKTFEVRLYPAQPIEGLRPGMSSLWQWKE
>LS483492.1|SQJ30319.1|4457052_4458066_+|Limonene-1,2-monooxygenase
MTQNASVPLSVLDLSPIPQGAKARDAFHCSLDLAQHAEKWGFQRYWLAEHHNMTGIGSAATSVLLGYLAAGTDTIRLGSGGVMLPNHAPLVIAEQFGTLESLYPGRIDLGLGRAPGTDQRTMMALRRHLSGEVDNFPRDVQELQHYFAEVQPGQPVQAVPGQGLHVPIWLLGSSLYSAQLSAKLGLPFAFASHFAPDMLFQALRLYRENYQPSERWPQPHAMVCVNVIAADSERDARFLFSSMQQQFINLRRGEPGPLPPPVDNIHALWSAGEQYGVEQALRMSIVGDENNVREGLQALLRETEADEIMVNGQIFDHQARLRSFEIVAQVKDALTRG
>LS483492.1|SQJ30342.1|4458108_4459548_-|High-copy-suppressor-of-rspA
MSTPSSAAVLGRAGLIILLAGQLLPMIDFSIVNVGLDAMAQSLHATPTQLELIVAVYGVAFAVCLAMGGRMGDNLGRRRLFLWGVRLFALASLMCGLANSVWLLLVARTLQGGGAAMIVPQIMATIHVCLRGREHARAMALYGGIGGLAFIIGQVLGGLLISLDIAGYGWRSVFLINIPLCVLVLVCAHRWVPDTRAQRRVNIDWPGTLLLALTIVCLLFPLALGPVWHWPWPCLALLALSGPLLLQLWRVERRQERRNNFPLLPPALLRLASVRFGLTIAILFFSCWSGFMFVMALTLQAGAKLNAFQSGNAFIALGVAYFISSLLSSTVIEHFGKVRTLLFGCLIQIGGLLALMLTMLLVWPQPGIVNLIPATLLIGAGQALIVSGFFRIGLADVPVEHAGSGSALLATVQQTSLGLGPILLGTVLVQVLHASPGDYLHALLAALVLELLLMLALLLRTLLVLRADRRLAAGQPSRT
>LS483492.1|SQJ30343.1|4459669_4460536_+|Uncharacterised-protein
MSEITSPTDAGQADNRKQLGAFLRARRESLDPNRLGLPRMRQRRTPGLRREEVAQLADVGITWYTWLEQGRAIQASTKTLSAIAHALQCNEAETHHLFRLAGQSLPASAQHGGCEKLSPYGQRLLDQLDPLPAIISNARFDILGFNRAYCLLMGVDLATLPPEDRNCIYLAFTHEQWRASQLDWDDIMPKMVALFRAQMAEHLGDPVWERQLARYLSVSEDFRALWERHEVRSIDNNVKRFLHPQVGEMSLRQNNWWSAPRNGDRMLVYIPADEQSERRLQQLTGGAG
>LS483492.1|SQJ30344.1|4460558_4460798_-|Predicted-transporter-component
MTQQTIVPDYRLDMLGEPCPYPAVATLEAMPQLKAGEILEVISDCPQSINNIPLDARNHGYKVLDIQQDGPTIRYLIQR
>LS483492.1|SQJ30345.1|4460797_4462009_-|putative-inner-membrane-protein
MNWQQFKTDYLVRFWAPLPAVIAAGLLATYYFGLTGTFWAVTGEFTRWGGHVLQWLGLHPEQWAYFKVIGLEGTPLTRIDGRMIIGMFAGCIAAALWANNIKLRRPQHRIRIVQALLGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWLFALATAAGSYFGAKFTLLPLFRVPIKLQKVQAAAPLTQLPQQARRRFRLGMLVFLLMSAWSLWTLFDAPKLGIAMLFGIAFGLLIERAQICFTSAFRDLWITGRTHMARAIILGMAVSAIGIFSYVQLGVAPKIMWAGPNALIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNIIGATLLAYYWDALAPSLATDYDKINLLEVFGPTGGLLVTYLLLALALVAMLWWEKRFFRAKARAERVDARSM
>LS483492.1|SQJ30346.1|4462139_4463996_-|Cold-shock-DEAD-box-protein-A
MTTELETSFADLGLSAPIISALNDLGYVKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDMYRALLAKLQPEEELEMETLAAALLKMAQGERPLILPPDPVFKPRKPREFNDRDDRRGDRRDGDRPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGEILNHFTRTRILNKPMNMQLLGDAQPHDRRERRDGGNRRPFNGERREGGPRRSFGERREGGNAAGNGERRGGNANRERAPRRRFGDA
>LS483492.1|SQJ30347.1|4464185_4465070_-|Lipoprotein-NlpI-precursor
MKLFLRWCYVATALMLAGCSNNDWRKDEVLAIPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYARLNRGIALYYGGRFPLAQDDLQAFYQDDPNDPFRSLWLYLVEREIDPKMAVIALQQRYDKADRGQWGWNIVEFYLGDISENTLMERLKADATDNTSLAEHLSETDFYLGKHYLSLGDKNSASALFKLTVANNVHNFVEHRYALLELALLGQEQDDLSESDQQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483492_1	1.5\|2896208\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896208-2896239	32	MK433577	Klebsiella phage ST512-KPC3phi13.6, complete genome	18074-18105	5	0.844
LS483492_1	1.5\|2896208\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896208-2896239	32	MK433581	Klebsiella phage ST258-KPC3phi16.1, complete genome	18074-18105	5	0.844
LS483492_1	1.5\|2896208\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896208-2896239	32	MK416011	Klebsiella phage ST437-OXA245phi4.1, complete genome	18074-18105	5	0.844
LS483492_1	1.6\|2896268\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896268-2896299	32	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	309213-309244	6	0.812
LS483492_2	2.1\|4444747\|31\|LS483492\|PILER-CR,CRISPRCasFinder	4444747-4444777	31	NC_049342	Escherichia phage 500465-1, complete genome	7539-7569	7	0.774
LS483492_2	2.1\|4444747\|31\|LS483492\|PILER-CR,CRISPRCasFinder	4444747-4444777	31	CP025900	Escherichia phage sp., complete genome	7539-7569	7	0.774
LS483492_1	1.5\|2896208\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896208-2896239	32	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	172917-172948	8	0.75
LS483492_1	1.6\|2896268\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896268-2896299	32	NZ_CP039912	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence	373822-373853	8	0.75
LS483492_1	1.4\|2896148\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896148-2896179	32	NC_024794	Escherichia phage vB_EcoM_PhAPEC2, complete genome	91327-91358	9	0.719
LS483492_1	1.6\|2896268\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896268-2896299	32	NC_002682	Mesorhizobium japonicum MAFF 303099 plasmid pMLb, complete sequence	167215-167246	9	0.719
LS483492_1	1.6\|2896268\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896268-2896299	32	CP021184	Sphingomonas wittichii DC-6 plasmid pDC03, complete sequence	891-922	9	0.719
LS483492_1	1.6\|2896268\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896268-2896299	32	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	843252-843283	9	0.719
LS483492_1	1.6\|2896268\|32\|LS483492\|PILER-CR,CRISPRCasFinder,CRT	2896268-2896299	32	NZ_CP011523	Streptomyces sp. CFMR 7 strain CFMR-7 plasmid unnamed, complete sequence	34923-34954	9	0.719
LS483492_3	3.1\|4453220\|31\|LS483492\|CRISPRCasFinder	4453220-4453250	31	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	488095-488125	10	0.677

1. spacer 1.5|2896208|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to MK433577 (Klebsiella phage ST512-KPC3phi13.6, complete genome) position: , mismatch: 5, identity: 0.844

acgtgtggacggacggcatcggtaacacgcac	CRISPR spacer
gcgtgtggaccgacggcatcggtaacacgtcg	Protospacer
.********* ******************.

2. spacer 1.5|2896208|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to MK433581 (Klebsiella phage ST258-KPC3phi16.1, complete genome) position: , mismatch: 5, identity: 0.844

acgtgtggacggacggcatcggtaacacgcac	CRISPR spacer
gcgtgtggaccgacggcatcggtaacacgtcg	Protospacer
.********* ******************.

3. spacer 1.5|2896208|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to MK416011 (Klebsiella phage ST437-OXA245phi4.1, complete genome) position: , mismatch: 5, identity: 0.844

acgtgtggacggacggcatcggtaacacgcac	CRISPR spacer
gcgtgtggaccgacggcatcggtaacacgtcg	Protospacer
.********* ******************.

4. spacer 1.6|2896268|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 6, identity: 0.812

atcaggagcaagcggttgccgctgc-cggtatg	CRISPR spacer
gtcacgagcaagtggttgccgctgcgccatat-	Protospacer
.*** *******.************ * .***

5. spacer 2.1|4444747|31|LS483492|PILER-CR,CRISPRCasFinder matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 7, identity: 0.774

atcgctggtatgaaccgccggtttcattccc	CRISPR spacer
atcgctggtatgaaccgccggtgagctttga	Protospacer
**********************    **.

6. spacer 2.1|4444747|31|LS483492|PILER-CR,CRISPRCasFinder matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 7, identity: 0.774

atcgctggtatgaaccgccggtttcattccc	CRISPR spacer
atcgctggtatgaaccgccggtgagctttga	Protospacer
**********************    **.

7. spacer 1.5|2896208|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 8, identity: 0.75

acgtgtggacggacggcatcggtaacacgcac	CRISPR spacer
ccgtcatcacggacgccatcgggaacacgcaa	Protospacer
 ***    ******* ****** ********

8. spacer 1.6|2896268|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039912 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625a, complete sequence) position: , mismatch: 8, identity: 0.75

atcaggagcaagcggttgccgctgccggtatg-	CRISPR spacer
gctacgaggaagcggttgccgctgtcgg-acgt	Protospacer
...* *** ***************.*** *.*

9. spacer 1.4|2896148|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to NC_024794 (Escherichia phage vB_EcoM_PhAPEC2, complete genome) position: , mismatch: 9, identity: 0.719

cagaagtcaacgatgttccgactgttccgcca	CRISPR spacer
gtgtgttagacgttgttccgactgttccacca	Protospacer
  * . * .*** ***************.***

10. spacer 1.6|2896268|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to NC_002682 (Mesorhizobium japonicum MAFF 303099 plasmid pMLb, complete sequence) position: , mismatch: 9, identity: 0.719

atcaggagcaagcggttgccgctgccggtatg	CRISPR spacer
agtgggagcaagccgttcccgctgccggcggc	Protospacer
* ..********* *** **********..

11. spacer 1.6|2896268|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to CP021184 (Sphingomonas wittichii DC-6 plasmid pDC03, complete sequence) position: , mismatch: 9, identity: 0.719

atcaggagcaagcggttgccgctgccggtatg	CRISPR spacer
gcgagtagcaagcggtttccgctgcccttccg	Protospacer
.. ** *********** ********  * .*

12. spacer 1.6|2896268|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

---atcaggagcaagcggttgccgctgccggtatg	CRISPR spacer
tcggccagg---aagcggtagccgctgccggtggc	Protospacer
   ..****   ******* ************.

13. spacer 1.6|2896268|32|LS483492|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011523 (Streptomyces sp. CFMR 7 strain CFMR-7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

atcaggagcaagcggttgccgctgccggtatg	CRISPR spacer
tcgagcgtcaagcgattgccgccgccggtatc	Protospacer
 . ** . ******.*******.********

14. spacer 3.1|4453220|31|LS483492|CRISPRCasFinder matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 10, identity: 0.677

gatgatttcgtcatgattggtgactccctcg	CRISPR spacer
tctgattgcgtcatgattggagactgatctt	Protospacer
  ***** ************ ****  ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2997318 : 3038806

Salmonella_phage(25.71%)

terminase,tail,capsid,head,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ21735.1\|2997318_3000402_-	Uncharacterised protein	A0A286S259	Klebsiella_phage	5.8e-283	50.2
SQJ21736.1\|3000398_3000779_-	Uncharacterised protein	A0A286S2A6	Klebsiella_phage	2.2e-54	77.0
SQJ21737.1\|3001268_3001739_-	Uncharacterised protein	A0A286S298	Klebsiella_phage	3.6e-59	61.3
SQJ21748.1\|3001738_3004165_-	Uncharacterised protein	A0A286S1S3	Klebsiella_phage	5.7e-140	41.7
SQJ21750.1\|3005329_3005905_-	Uncharacterised protein	A0A286S1Q8	Klebsiella_phage	6.3e-66	76.9
SQJ21752.1\|3005922_3006288_-	Protein of uncharacterised function (DUF3168)	K7PHI9	Enterobacteria_phage	1.1e-47	71.9
SQJ21754.1\|3006284_3006770_-	phage protein, HK97 gp10 family	A0A0U3TGT7	Pseudomonas_phage	5.4e-50	60.7
SQJ21755.1\|3007118_3007328_-	Uncharacterised protein	K7PJU7	Enterobacteria_phage	1.7e-08	55.1
SQJ21757.1\|3007395_3007722_-\|head,tail	Phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	5.8e-24	54.6
SQJ21759.1\|3007725_3008781_-	Uncharacterised protein	S4TNN1	Salmonella_phage	9.5e-68	44.7
SQJ21761.1\|3008773_3009529_-\|portal	phage portal protein, HK97 family	S4TTG7	Salmonella_phage	5.2e-100	74.2
SQJ21763.1\|3009473_3010127_-\|portal	phage portal protein, HK97 family	S4TTG7	Salmonella_phage	3.9e-72	67.0
SQJ21764.1\|3010335_3012279_-\|capsid	Predicted phage phi-C31 gp36 major capsid-like protein	S4TNE3	Salmonella_phage	5.8e-297	80.8
SQJ21766.1\|3012337_3013996_-\|terminase	Phage terminase-like protein, large subunit	Q3HQS7	Burkholderia_phage	9.0e-238	72.1
SQJ21768.1\|3013998_3014454_-	Terminase small subunit	S4TNN3	Salmonella_phage	1.2e-38	59.1
SQJ21769.1\|3014985_3015576_-	Uncharacterised protein	S4TR53	Salmonella_phage	8.8e-71	64.1
SQJ21771.1\|3015560_3017021_-	mycofactocin system glycosyltransferase	K7PKP3	Enterobacterial_phage	6.0e-230	76.5
SQJ21796.1\|3017030_3017240_-	Uncharacterised protein	NA	NA	NA	NA
SQJ21889.1\|3017480_3018011_+	Uncharacterised protein	NA	NA	NA	NA
SQJ21890.1\|3019010_3019394_-	Uncharacterised protein	NA	NA	NA	NA
SQJ21908.1\|3019390_3019870_-	Phage-related lysozyme (muraminidase)	A0A2I6TCA1	Escherichia_phage	2.5e-47	56.4
SQJ21912.1\|3019872_3020109_-	Lysis protein S	A0A127KNH9	Pseudomonas_phage	3.0e-06	37.7
SQJ21913.1\|3020496_3020607_-	Uncharacterised protein	NA	NA	NA	NA
SQJ22047.1\|3020913_3021132_+	Uncharacterised protein	NA	NA	NA	NA
SQJ22049.1\|3021573_3022827_-	DNA adenine methyltransferase YhdJ	Q8W637	Enterobacteria_phage	4.4e-120	61.2
SQJ22129.1\|3023190_3023952_-	Uncharacterised protein	NA	NA	NA	NA
SQJ22145.1\|3024200_3024599_-	Phage antitermination protein Q	U5P0A5	Shigella_phage	1.4e-32	60.3
SQJ22192.1\|3024650_3025637_-	Protein of uncharacterised function (DUF968)	A0A0P0ZD76	Stx2-converting_phage	6.1e-85	47.3
SQJ22202.1\|3025633_3026005_-	Crossover junction endodeoxyribonuclease rusA	A0A1C9IIA0	Salmonella_phage	4.3e-39	60.8
SQJ22205.1\|3026001_3026571_-	Transcriptional activator, adenine-specific DNA methyltransferase	Q858E6	Salmonella_phage	2.4e-81	75.7
SQJ22207.1\|3026567_3026915_-	Uncharacterised protein	NA	NA	NA	NA
SQJ22209.1\|3026911_3027601_-	Replication protein P	I6PBN0	Cronobacter_phage	8.2e-44	46.4
SQJ22211.1\|3027597_3028497_-	Uncharacterised protein	U5P0A0	Shigella_phage	8.4e-57	49.8
SQJ22213.1\|3028493_3028676_-	Uncharacterised protein	NA	NA	NA	NA
SQJ22215.1\|3028870_3029395_-	Uncharacterised protein	NA	NA	NA	NA
SQJ22217.1\|3029423_3029621_-	DNA-binding transcriptional regulator DicC	K7PHB1	Enterobacterial_phage	2.0e-19	79.7
SQJ22218.1\|3030002_3030371_+	Peptidase S24-like	G9L676	Escherichia_phage	3.9e-45	75.0
SQJ22220.1\|3030491_3031508_+	Uncharacterised protein	A0A0R6PIZ6	Moraxella_phage	4.9e-37	31.1
SQJ22222.1\|3031762_3032062_+	Uncharacterised protein	NA	NA	NA	NA
SQJ22224.1\|3032565_3033096_+	Uncharacterised protein	A5LH62	Enterobacteria_phage	2.5e-56	62.4
SQJ22226.1\|3033095_3033530_+	Uncharacterised protein	A0A2D1GNS5	Pseudomonas_phage	7.3e-06	51.0
SQJ22228.1\|3033812_3034418_+	Uncharacterised protein	H2BDG4	Pseudomonas_virus	6.7e-42	44.2
SQJ22230.1\|3034410_3034617_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
SQJ22232.1\|3035209_3035674_+	Uncharacterised protein	O64350	Escherichia_phage	2.2e-08	49.1
SQJ22233.1\|3035639_3036188_+	Uncharacterised protein	NA	NA	NA	NA
SQJ22235.1\|3036451_3036985_+	Uncharacterised protein	NA	NA	NA	NA
SQJ22236.1\|3037166_3037511_+	Uncharacterised protein	H9C172	Pectobacterium_phage	4.4e-30	58.2
SQJ22238.1\|3037795_3038806_+	Site-specific recombinase XerD	K7PLZ2	Enterobacterial_phage	7.4e-126	64.6

DBSCAN-SWA_2

4016010 : 4033091

Erwinia_phage(38.89%)

lysis,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQJ28565.1\|4016010_4017084_-	Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive	A0A0B6VT43	Edwardsiella_phage	1.8e-90	51.7
SQJ28569.1\|4017634_4018978_+	Anaerobic C4-dicarboxylate transporter DcuB	NA	NA	NA	NA
SQJ28572.1\|4019006_4019642_-	Bacteriophage CI repressor helix-turn-helix domain	Q6K1G0	Salmonella_virus	1.2e-60	55.7
SQJ28723.1\|4020103_4020298_+	Uncharacterised protein	NA	NA	NA	NA
SQJ28726.1\|4020502_4020709_+	Phage Tail Protein X	F1BUQ5	Erwinia_phage	2.7e-19	64.2
SQJ28742.1\|4020712_4020931_+	Uncharacterised protein	F1BUQ4	Erwinia_phage	4.6e-09	48.3
SQJ28743.1\|4020914_4021427_+	Phage-related lysozyme (muraminidase)	A0A218M4K3	Erwinia_phage	1.1e-58	63.9
SQJ28744.1\|4021423_4021837_+\|lysis	phage lysis regulatory protein, LysB family	NA	NA	NA	NA
SQJ28745.1\|4021947_4022412_+\|tail	P2 phage tail completion protein R (GpR)	A0A077K8R3	Ralstonia_phage	8.0e-19	41.9
SQJ28746.1\|4022500_4023136_+\|plate	Phage P2 baseplate assembly protein gpV	A0A0F7LDY9	Escherichia_phage	6.8e-61	56.1
SQJ28747.1\|4023132_4023483_+\|plate	Phage P2 baseplate assembly protein gpV	F1BUP4	Erwinia_phage	8.9e-39	68.1
SQJ28748.1\|4023487_4024396_+	Uncharacterized homolog of phage Mu protein gp47	A0A1J0I2M3	Salmonella_phage	2.2e-121	75.5
SQJ28749.1\|4024559_4025729_+\|tail	Phage tail sheath protein	F1BUU3	Erwinia_phage	6.8e-184	79.4
SQJ28750.1\|4025742_4026252_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	3.3e-66	69.5
SQJ28751.1\|4026321_4026609_+\|tail	Phage tail protein E	A0A0F7LDQ8	Escherichia_phage	4.3e-23	56.7
SQJ28752.1\|4026756_4028811_+\|tail	Phage-related minor tail protein	A0A0M3UL85	Salmonella_phage	6.5e-28	30.8
SQJ28753.1\|4028823_4029306_+	Phage protein U	A0A0F7LDE8	Escherichia_phage	1.7e-43	54.3
SQJ28754.1\|4029302_4030454_+	Phage protein D	A0A0M5M5V5	Salmonella_phage	7.6e-95	46.2
SQJ28755.1\|4030530_4030764_+	DNA-binding transcriptional regulator	F1BUT0	Erwinia_phage	3.7e-17	75.5
SQJ28756.1\|4030767_4031334_+\|tail	Bacteriophage P2-related tail formation protein	Q858V5	Yersinia_virus	2.8e-74	75.3
SQJ28757.1\|4031345_4033091_+\|tail	Phage tail fibre repeat	A0A0M3ULH6	Salmonella_phage	7.6e-62	52.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LS483492

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection