CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483496	Haemophilus influenzae strain NCTC8455 genome assembly, chromosome: 1	1 crisprs	DEDDh,DinG,cas3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LS483496_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LS483496_1

583460-583582

Orphan

Consensus_repeat	Method
GGGTAGATATAAGCGTTCCCCAAAGGGGAACCACGATTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of LS483496_1

>merge|LS483496|1|583460-583582|CRISPRCasFinder
GGGTAGATATAAGCGTTCCCCAAAGGGGAACCACGATTACCATCACTAACCGTGGGTATACTTACCCACGGCTTACAAACCGAGGGTAGATATAAGCGTTCCCCAAAGGGGAACTACGATTAC

>LS483496|1|1|583460-583582|CRISPRCasFinder
GGGTAGATATAAGCGTTCCCCAAAGGGGAACCACGATTAC	CATCACTAACCGTGGGTATACTTACCCACGGCTTACAAACCGA
GGGTAGATATAAGCGTTCCCCAAAGGGGAACTACGATTAC

Protein	Signature genes	Signature genes Name	Protein_function
LS483496.1\|SQK93012.1\|575170_575896_-\|DNA-binding-transcriptional-dual-regulator	unknown	unknown	gnl\|CDD\|163028
LS483496.1\|SQK93025.1\|586368_586878_-\|competence-protein-b	unknown	unknown	unknown
LS483496.1\|SQK93017.1\|580513_581104_-\|D-fructose-6-phosphate-amidotransferase	unknown	unknown	gnl\|CDD\|225610
LS483496.1\|SQK93030.1\|591911_592514_+\|gap-repair-protein	unknown	unknown	gnl\|CDD\|223430
LS483496.1\|SQK93015.1\|578161_579994_-\|L-glutamine:D-fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
LS483496.1\|SQK93016.1\|580102_580375_-\|HU,-DNA-binding-transcriptional-regulator-subunit-alpha	unknown	unknown	gnl\|CDD\|259853
LS483496.1\|SQK93014.1\|577574_578108_+\|oxidoreductase-that-catalyzes-reoxidation-of-DsbA-protein-disulfide-isomerase-I	unknown	unknown	gnl\|CDD\|234979
LS483496.1\|SQK93026.1\|586878_587676_-\|competence-protein-A	unknown	unknown	gnl\|CDD\|227306
LS483496.1\|SQK93018.1\|581139_581934_-\|NADH-pyrophosphatase	unknown	unknown	gnl\|CDD\|234699
LS483496.1\|SQK93022.1\|584087_585431_-\|competence-protein-E	unknown	unknown	gnl\|CDD\|274173
LS483496.1\|SQK93013.1\|576020_577565_+\|sodium/proton-antiporter	unknown	unknown	gnl\|CDD\|181942
LS483496.1\|SQK93028.1\|590451_591297_+\|DNA-(exogenous)-processing-protein	unknown	unknown	gnl\|CDD\|225509
LS483496.1\|SQK93027.1\|587774_590375_+\|penicillin-binding-protein-1a	unknown	unknown	gnl\|CDD\|227342
LS483496.1\|SQK93023.1\|585440_585854_-\|competence-protein-D	unknown	unknown	unknown
LS483496.1\|SQK93029.1\|591449_591779_+\|DNA-binding-protein,-YbaB/EbfC-family	unknown	unknown	gnl\|CDD\|234669
LS483496.1\|SQK93024.1\|585850_586372_-\|competence-protein-C	unknown	unknown	unknown
LS483496.1\|SQK93011.1\|573758_575126_+\|phosphatidylserine-synthase	unknown	unknown	gnl\|CDD\|236510
LS483496.1\|SQK93021.1\|583635_584091_-\|transposase-IS200-like-protein	unknown	unknown	gnl\|CDD\|376616
LS483496.1\|SQK93020.1\|582673_583360_-\|competence-protein-F	unknown	unknown	gnl\|CDD\|272958
LS483496.1\|SQK93019.1\|582001_582598_-\|gluconate-transport-associated-protein	unknown	unknown	gnl\|CDD\|183027

Protein	Function_ID	Function_description	E-value
LS483496.1\|SQK93012.1\|575170_575896_-\|DNA-binding-transcriptional-dual-regulator	gnl\|CDD\|163028	TIGR02812, Fatty_acid_metabolism_regulator_protein, fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function. [Fatty acid and phospholipid metabolism, Biosynthesis, Fatty acid and phospholipid metabolism, Degradation, Regulatory functions, DNA interactions].	1.88471e-147
LS483496.1\|SQK93017.1\|580513_581104_-\|D-fructose-6-phosphate-amidotransferase	gnl\|CDD\|225610	COG3068, COG3068, Uncharacterized protein conserved in bacteria [Function unknown].	2.41957e-114
LS483496.1\|SQK93030.1\|591911_592514_+\|gap-repair-protein	gnl\|CDD\|223430	COG0353, RecR, Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair].	2.47883e-123
LS483496.1\|SQK93015.1\|578161_579994_-\|L-glutamine:D-fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
LS483496.1\|SQK93016.1\|580102_580375_-\|HU,-DNA-binding-transcriptional-regulator-subunit-alpha	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	4.32312e-42
LS483496.1\|SQK93014.1\|577574_578108_+\|oxidoreductase-that-catalyzes-reoxidation-of-DsbA-protein-disulfide-isomerase-I	gnl\|CDD\|234979	PRK01749, PRK01749, disulfide bond formation protein DsbB.	8.16894e-84
LS483496.1\|SQK93026.1\|586878_587676_-\|competence-protein-A	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	1.6288e-07
LS483496.1\|SQK93018.1\|581139_581934_-\|NADH-pyrophosphatase	gnl\|CDD\|234699	PRK00241, nudC, NAD(+) diphosphatase.	1.41902e-155
LS483496.1\|SQK93022.1\|584087_585431_-\|competence-protein-E	gnl\|CDD\|274173	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures].	2.4103e-176
LS483496.1\|SQK93013.1\|576020_577565_+\|sodium/proton-antiporter	gnl\|CDD\|181942	PRK09547, nhaB, sodium/proton antiporter NhaB.	0
LS483496.1\|SQK93028.1\|590451_591297_+\|DNA-(exogenous)-processing-protein	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	3.2119e-178
LS483496.1\|SQK93027.1\|587774_590375_+\|penicillin-binding-protein-1a	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
LS483496.1\|SQK93029.1\|591449_591779_+\|DNA-binding-protein,-YbaB/EbfC-family	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	2.2841e-46
LS483496.1\|SQK93011.1\|573758_575126_+\|phosphatidylserine-synthase	gnl\|CDD\|236510	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase.	0
LS483496.1\|SQK93021.1\|583635_584091_-\|transposase-IS200-like-protein	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	4.93976e-25
LS483496.1\|SQK93020.1\|582673_583360_-\|competence-protein-F	gnl\|CDD\|272958	TIGR00201, ComF_operon_protein_3, comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis. [Cellular processes, DNA transformation].	1.60603e-87
LS483496.1\|SQK93019.1\|582001_582598_-\|gluconate-transport-associated-protein	gnl\|CDD\|183027	PRK11190, PRK11190, iron-sulfur cluster biogenesis protein NfuA.	9.20722e-152

>LS483496.1|SQK93020.1|582673_583360_-|competence-protein-F
MNFLNFRCIHCRGNLHIAKNGLCSGCQKQIKSFPYCGHCGAELQYYAQHCGNCLKQEPSWDKMVIIGHYVEPLSVLIHRFKFQNQFWIDRTLARLLYLAVRNAKRTHQLKLPEAIIPVPLYHFRQWRRGYNQADLLSRQLSRWLDIPNLNNIVKRVKHTHTQRGLSAKDRRQNLKNAFSLAVLKNEFPYHRVALVDDVITTGSTLNEISKLLRKLGVEEIQVWGLARA
>LS483496.1|SQK93019.1|582001_582598_-|gluconate-transport-associated-protein
MEQATQQIAISDAAQAHFRKLLDTQEEGTNIRIFVVNPGMPNAECGVSYCPPNAVEESDVEMKYDTFSAFIDEVSLPFLEEAEIDYVTEELGAQLTLKAPNAKMRKVADDAPLIERVEYVIQTQINPQLANHGGRITLIEITEDGYAILQFGGGCNGCSMVDVTLKDGVEKQLISLFPNELKGAKDITEHQRGEHSYY
>LS483496.1|SQK93018.1|581139_581934_-|NADH-pyrophosphatase
MKILQQDDFGYWLLTQGSNLYLVNNELPFGIAKDIDLEGLKAMQIGEWKNHPLWLVAEQINDEREYVSLRKLLSLPEDEFYILSRGVEINHFLKTHKFCGKCGHKTQQTQDELAVQCTHCGYRTYPVICPSIIVAVRRGHEILLANHKRHYSPNGGIYTTLAGFVEVGETFEQAVNREVFEETGISIKNLRYFGSQPWAFPNSQMVGFLADYESGEITLQESEIYDAQWFSYDQPLPELPPTGTIARKLIHATLELCKAENKRD
>LS483496.1|SQK93017.1|580513_581104_-|D-fructose-6-phosphate-amidotransferase
MRNPIHKRLENLESWQHLTFMAALCERMAPNFKLFCQMNELSVEAKTYQNILNLVWEYLTIKDVKINFENQLEKLESIIPDVNDYDSFGVVPALDACQALAEILHAIIAGETLERAVEISLISLGTIRALLETETGRDWSESELKENEDIQTELDVQWQVYRLLKECEKRDIELILALKNEIRTEGISNIGIEFHQ
>LS483496.1|SQK93016.1|580102_580375_-|HU,-DNA-binding-transcriptional-regulator-subunit-alpha
MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTGRNPQTGAEIQIAASKVPAFVSGKALKDAIK
>LS483496.1|SQK93015.1|578161_579994_-|L-glutamine:D-fructose-6-phosphate-aminotransferase
MCGIVGAVAQRDVAEILINGLHRLEYRGYDSAGVAVINKQNELQRIRCLGKVKALDEAVSEKPLIGGTGIAHTRWATHGEPSETNAHPHASGTFAVVHNGIIENHEELRELLKSRGYVFLSQTDTEVIAHLVEWEMRSTDSLLEAVQKSVKQLTGAYGMVVMDSRNPEHLVAARSGSPLVIGLGIGENFLASDQLALLSVTRRFIFLEEGDIAEITRRTVDIYDTHGNKAKREIHESNLENDAAEKGKFRHFMQKEIYEQPTALINTMEGRINHENVIVDSIGNGAKDILEKVEHIQIVACGTSYNAGMVARYWFESLAGVSCDVEIASEFRYRKFVTRPNSLLITLSQSGETADTLAALRLAKEKGYMAALTICNVAGSSLVRESDLAFMTRAGVEVGVASTKAFTTQLAALLMLVTALGKVKGHISAEKEREIIKAMQSLPAEIEKALAFDSEIEALAEDFAEKHHSLFLGRGEFYPIAVEASLKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKVKSNIEEVRARGGQLYVFADKEAGFTPSEGMKIITMPKVNDIVAPIFYTIPMQLLSYYVALIKGTDVDQPRNLAKSVTVE
>LS483496.1|SQK93014.1|577574_578108_+|oxidoreductase-that-catalyzes-reoxidation-of-DsbA-protein-disulfide-isomerase-I
MLALLKQFSEKRFVWFLLAFSSLALESTALYFQYGMGLQPCVLCVYERLAMIGLFVAGIIALLQPRVFILRLIALVLGLFSSIKGLLISFRHLDLQINPAPWKQCEFIPNFPETLPFHQWFPFIFNPTGSCNESQWSLFGLTMVQWLVVIFSLYVVILTLLLIAQVIKTRKQRRLFN
>LS483496.1|SQK93013.1|576020_577565_+|sodium/proton-antiporter
MTNTQAFMKNFLGASPDWYKLAIVVFLIINPIVFFFISPFIAGWLLVAEFIFTLAMALKCYPLQPGGLLAIEAIIIGMTNAKHVKAEIMANFEVILLLMFMVAGIFFMKQLLLYVFTKLLVKIRSKIALSIAFCFSAAFLSAFLDALTVVAVIISVAMGFYGVYHKVASGNNLIDAVDISDDRKIIEQQHEILEKFRAFLRSLMMHAGVGTALGGVMTVVGEPQNLIIAEQAKWNFMEFFLRMAPVTIPVFICGLLTCFLVEKFKLFGYGEKLPDEVWKILSDLDRTNSEKMSKQDKIKLGMQALIAIWLILGLAFHLAAVGLIGLSIIIFATSFTGVTDEHTSGKAFQESLPFTALLVVFFSVVAVIIDQKLFSPIIHFVLSAEENTQLALFYVFNGLLSSISDNVFVATVYINEAKAALTNGVIAPHQFELLSVAINTGTNLPSVATPNGQAAFLFLLTSSLSPLIRLSYGRMVYMALPYTIVLSIIGLLAIEFILPAATIWLASLGLILPI
>LS483496.1|SQK93012.1|575170_575896_-|DNA-binding-transcriptional-dual-regulator
MQNNNDILKAQSPAALAEEYIVKSIWQDVFPAGSNLPSERDLADKIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNIWDAAGPNIIETLIALDMQSAPLIIDNMLSLRSKMSESYIYEAVKNSPQKSAALFAELGQLQNTAQDYTEFDYQLFRQFTVVANKPFYRLIFNSLKGVYQRIGLLFFKEKTHRELTKQFYLEMQQICLEGNADAVVDCIRKNNLRSSTYWKAILERLPQNLSD
>LS483496.1|SQK93011.1|573758_575126_+|phosphatidylserine-synthase
MLINKTKRAEQNLNNLPFLALQAEQIEFLGSPAEFKTQIIELIRNAKKRIYVTALYWQKDEAGQEILDEIYRVKQENPHLDVKILIDWHRAQRNLLGAEKSATNADWYCEQRQTYQLPDDPNMFFGVPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQLEKYRYDRYQKITHAELADSMVNFINDYLLDFSAVYPLDVTNRPRTKEIRSNIRIYRKDLAQNGKYSLKSAVKLPNVLSVSPLFGLGASGNELNQVIEDLFLQVQEKLVICTPYFNFPRTLQHKIATLLENGKQVEIIVGDKVANDFYIPPEQPFKMVGALPYLYESNLRRFCEKFETQIERGQLVVRLWRDGDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKVLKYYTELEELNQYPEPVQKLLKKFARIKADKLVKMIL
>LS483496.1|SQK93021.1|583635_584091_-|transposase-IS200-like-protein
MSYCRLFYHIVFRTKDSVYAINEENEKILYDYIWGFVKSHHSILHRINGMPDHLHLFVELHQTISVAEFVRKLKKSTHRFLDENKPLFPEFTAWSVGYCALTYSDSDKYQLINYIKNQKQHHKETHFNDEMKSLFQREGIDFNVEWFERNV
>LS483496.1|SQK93022.1|584087_585431_-|competence-protein-E
MKKYFLKCGYFLVCFCLPLIVFANPKTDNERFFIRLSQAPLAQTLEQLAFQQDVNLVMDEALESNISLRLDNIDMPRLLQIIAKSKKLTLNKDEGIYYLNGGQSGKGQVAGNLTTNEPHLMSHTVKLHFAKASELMKSLTTGSGSLLSSAGSITFDDRSNLLVIQDEPRSVQNIKKLIAEMDKPIEQIAIEARIVTITDESLKELGVRWGIFNPTENAARVAGSLSGNSFENIADNLNVNFATTTTPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVSNTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVSYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTPHILKAGETLEALKQKSAGKKLQ
>LS483496.1|SQK93023.1|585440_585854_-|competence-protein-D
MKYWFFLTVLLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKDKAFALLQDQGLQVYSILEGVDVAQEGYIVEKIDQNNVQFMRKLGEQCDSSEWKKLSF
>LS483496.1|SQK93024.1|585850_586372_-|competence-protein-C
MKTFFNDPFTPFGKWLSQPVYIQSLTFLLLLSAVIFRPVLDYIEASEHFAETEYELAKKSSELLHQQKILTSLQQQSESRKLSPELAAQIIPLNKQIQRLAARNGLSQHLRWEMGQQPILHLQLIGHFEKTKTFLTALLANTSQLSVSRLQFMKPEDSPLQTEIIFQLEKETK
>LS483496.1|SQK93025.1|586368_586878_-|competence-protein-b
MSMNLLPWRTYQHQNRLRRLAFYIALFILLAINLTLAFSNLIEQQKQDLQAQQTSFEQLNQQLYKTAKKIEQLRSAVQVGEILTSIPKEQVKKSLQRLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFQPEQQSLYFLFDVEQVGEDK
>LS483496.1|SQK93026.1|586878_587676_-|competence-protein-A
MQFSLKNYLTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVLMLPQVLNAQECHQQCKFVLEKELPISLDELWFDYRSTPLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRAFQYLLNEQVRSENSLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPEHWQRVETELPFIALGNALWQKDLYQQKVDN
>LS483496.1|SQK93027.1|587774_590375_+|penicillin-binding-protein-1a
MRIAKLILSTLLTLCILGLVAGGMLYFYLKSELPSVETLKTVELQQPMQIYTADGKLIGEVGEQRRIPVKLADVPQRLIDAFLATEDSRFYEHHGLDPIGIARALFVVVSNGGASQGASTITQQLARNFFLTPEKTIIRKAREAVLAVEIENTLNKQEILELYLNKIFLGYRSYGVAAAAQTYFGKALNELTLSEMAIIAGLPKAPSTMNPLYSLKRSEERRNVVLSRMLDEKYISKEEYDAALKEPIVASYHGAKFEFRADYVTEMVRQEMVRRFGEENAYTSGYKVFTTVLSKDQDEAQKAVRNNLIDYDMRHGYRGGAPLWQKNEAAWDNDRIVGFLRKLPDSEPFIPAAVIGIVKGGADILLASGEKMTLSTNAMRWTGRSNPVKVGEQIWIRQRANGEWQLGQIPSANSALVSLNSDNGAIEAIVGGFSYEQSKFNRATQSLVQVGSSIKPFIYAAALEKGLTLSSVLQDSPISIQKPGQKLWQPKNSPDRYDGPMRLRVGLGQSKNMIAIRAIQTAGIDFTAEFLQRFGFKRDQYFASEALALGAASFTPLEMARAYSVFDNGGFLIEPYIIEKIQDNTGKELFAANPKIACIECNDIPVIYGETKDKINGFANIPLGENALKPTDDSTNGEELDQQPETVPELPELQSNFTALKEDAIDLMAAAKNASSKIEYAPRVISGELAFLIRSALNTAIYGEQGLDWKGTSWRIAQSIKRSDIGGKTGTTNSSKVAWYAGFGANLVTTTYVGFDDNKRVLGRGEAGAKTAMPAWITYMKTALSDKPERKLTLPPKIVEKSIDTFTGLLSPNGGRKEYFIVGTEPTRTYLSEMQERGYYVPTELQQRLNNEGNTPTPAAQPEELF
>LS483496.1|SQK93028.1|590451_591297_+|DNA-(exogenous)-processing-protein
MLSYRHSFHAGNHADVLKHIVLMLILENLKLKEKGFFYLDTHSGVGRYRLSSNESEKTGEYKEGIGRLWDQTDLPEDVARYVKMIKKLNYGGKELRYYAGSPLIAAELLRPQDRALLTELHPSDYPILRNNFSDDKNVTVKCDNGFQQVKATLPPKERRGLVLIDPPYELKEDYDLVVKAIEEGYKRFATGTYAIWYPVVLRQQTKRIFKGLEATGIRKILKIELAIRPDSDQRGMTASGMVVINPPWTLETQMKEILPYLTKTLVPEGTGSWTVEWITPE
>LS483496.1|SQK93029.1|591449_591779_+|DNA-binding-protein,-YbaB/EbfC-family
MFGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMPLPPGMKFPF
>LS483496.1|SQK93030.1|591911_592514_+|gap-repair-protein
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLAQALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNSGLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEMCRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

111749 : 121929

Bacillus_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQK92370.1\|111749_112766_+	nucleoid-associated protein NdpA	A0A1V0E8C0	Vibrio_phage	5.6e-73	44.6
SQK92371.1\|112831_113245_+	small protein A	NA	NA	NA	NA
SQK92372.1\|113295_113979_+	DNA-binding response regulator in two-component regulatory system with CpxA	W8CYM9	Bacillus_phage	3.4e-34	39.3
SQK92373.1\|114062_114422_+	sensory histidine kinase in two-component regulatory system with CpxR	W8CYF6	Bacillus_phage	1.2e-09	36.1
SQK92374.1\|114454_115426_-\|tRNA	lysyl-tRNA synthetase	A0A2K9L3L6	Tupanvirus	3.1e-28	27.1
SQK92375.1\|115636_117436_+	fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit	M1HTN0	Paramecium_bursaria_Chlorella_virus	3.8e-16	24.9
SQK92376.1\|117428_118199_+	fumarate reductase (anaerobic), Fe-S subunit	NA	NA	NA	NA
SQK92377.1\|118209_118620_+	fumarate reductase (anaerobic), membrane anchor subunit	NA	NA	NA	NA
SQK92378.1\|118631_118976_+	fumarate reductase (anaerobic), membrane anchor subunit	NA	NA	NA	NA
SQK92379.1\|119082_119667_-	biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA
SQK92380.1\|119809_120115_-	DNA-binding transcriptional repressor, tryptophan-binding	NA	NA	NA	NA
SQK92381.1\|120147_121929_-	intracellular septation protein A	K4NWI2	Pseudomonas_phage	2.6e-17	39.5

DBSCAN-SWA_2

864161 : 876026

Liberibacter_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQK93283.1\|864161_865958_+	aerobic respiration control sensor protein ArcB	A0A1V0SGX0	Hokovirus	5.4e-39	31.8
SQK93284.1\|866171_866801_+	inner membrane protein	NA	NA	NA	NA
SQK93285.1\|866947_868399_-	type I restriction-modification system	A0A220A398	Liberibacter_phage	2.9e-06	32.0
SQK93286.1\|868514_870023_-	type I restriction-modification system	A0A220A398	Liberibacter_phage	4.2e-16	24.3
SQK93287.1\|870407_871631_-	Probable type I restriction-modification system specificity determinant	A0A1V0SLK8	Klosneuvirus	6.0e-13	26.0
SQK93288.1\|871772_872201_-	DNA binding protein	Q9JMN3	Wolbachia_phage	4.5e-16	42.6
SQK93289.1\|872203_873052_-	putative type I restriction-modification system methyltransferase subunit	A0A2H4PQP4	Staphylococcus_phage	3.6e-49	44.8
SQK93290.1\|873248_873749_-	putative type I restriction-modification system methyltransferase subunit	NA	NA	NA	NA
SQK93292.1\|873980_876026_-	oligopeptidase A	A0A1V0SD92	Indivirus	4.6e-50	24.8

DBSCAN-SWA_3

1035588 : 1133641

Mannheimia_phage(26.92%)

tail,terminase,lysis,holin,head,protease,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQK93581.1\|1035588_1036053_+\|protease	metalloprotease	NA	NA	NA	NA
SQK93583.1\|1036071_1036857_+	haloacid dehalogenase-like protein	NA	NA	NA	NA
SQK93585.1\|1036893_1038693_-	long chain fatty acid CoA ligase	A0A1V0SBX8	Catovirus	1.9e-44	24.7
SQK93587.1\|1038886_1039906_-	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
SQK93590.1\|1040156_1040783_+	guanylate kinase	K4JYM5	Abalone_herpesvirus	7.5e-20	35.6
SQK93592.1\|1040845_1041112_+	RNA polymerase subunit omega	NA	NA	NA	NA
SQK93594.1\|1041403_1043518_+	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	2.5e-11	38.8
SQK93597.1\|1043514_1045596_+	ATP-dependent DNA helicase	NA	NA	NA	NA
SQK93599.1\|1045625_1046435_+	glutamate racemase	NA	NA	NA	NA
SQK93601.1\|1046645_1047791_+	L-lactate dehydrogenase, FMN-linked	NA	NA	NA	NA
SQK93603.1\|1053853_1054783_+	DNA-binding transcriptional activator, homocysteine-binding	NA	NA	NA	NA
SQK93605.1\|1054792_1055512_+	branched-chain amino acid permease	NA	NA	NA	NA
SQK93608.1\|1055508_1055838_+	branched-chain amino acid permease	NA	NA	NA	NA
SQK93610.1\|1055940_1056174_+	L-lactate dehydrogenase	NA	NA	NA	NA
SQK93612.1\|1056249_1057830_-	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	3.3e-32	26.1
SQK93653.1\|1058159_1058948_+	enoyl-ACP reductase	NA	NA	NA	NA
SQK93655.1\|1059027_1061007_+	ribonuclease II	Q0GXV6	Lactococcus_phage	3.8e-25	25.1
SQK93656.1\|1061386_1066870_+	hemophilus surface fibril	NA	NA	NA	NA
SQK93658.1\|1067106_1067748_+	allophanate hydrolase subunit 1	NA	NA	NA	NA
SQK93660.1\|1067744_1068674_+	allophanate hydrolase subunit 2	NA	NA	NA	NA
SQK93662.1\|1068660_1069398_+	lactam utilization protein	NA	NA	NA	NA
SQK93663.1\|1069441_1070635_+	Mn2+ and Fe2+ transporter of the NRAMP family	NA	NA	NA	NA
SQK93665.1\|1070715_1072050_-	argininosuccinate synthetase	A0A140XAJ5	Dickeya_phage	2.2e-53	79.4
SQK93667.1\|1072226_1073099_-	phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0M4JBD3	Mollivirus	4.3e-50	35.7
SQK93668.1\|1073264_1075613_-	penicillin-binding protein 1b	NA	NA	NA	NA
SQK93670.1\|1075619_1076018_-	Uncharacterised protein family (UPF0231)	NA	NA	NA	NA
SQK93672.1\|1075974_1076319_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	1.7e-26	48.6
SQK93674.1\|1076454_1077261_+	methionine aminopeptidase	NA	NA	NA	NA
SQK93675.1\|1077353_1079945_+	uridylyltransferase	NA	NA	NA	NA
SQK93677.1\|1080733_1081801_+	UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase	NA	NA	NA	NA
SQK93679.1\|1082098_1082647_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.7e-29	40.7
SQK93681.1\|1082717_1083758_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
SQK93683.1\|1083915_1084173_+	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)	NA	NA	NA	NA
SQK93685.1\|1084252_1085980_+	PEP-protein phosphotransferase of PTS system (enzyme I)	NA	NA	NA	NA
SQK93688.1\|1086039_1086540_+	glucose-specific enzyme IIA component of PTS	NA	NA	NA	NA
SQK93690.1\|1086887_1087253_+	putative outer membrane protein	A0A1I9LJU6	Stx_converting_phage	5.9e-09	34.2
SQK93691.1\|1087316_1087982_+	DNA-binding response regulator in two-component regulatory system with QseC	NA	NA	NA	NA
SQK93692.1\|1087978_1089334_+	sensory histidine kinase in two-component regulatory system with QseB	W8CYF6	Bacillus_phage	2.1e-14	26.8
SQK93693.1\|1089683_1091627_+\|holin	choline transporter of high affinity	A0A2I7QNT1	Vibrio_phage	1.5e-18	24.8
SQK93694.1\|1091663_1093139_-	aminopeptidase A	Q6GYZ8	Mycoplasma_phage	4.2e-45	35.2
SQK93695.1\|1093245_1094349_+	permease	NA	NA	NA	NA
SQK93696.1\|1094345_1095422_+	permease	NA	NA	NA	NA
SQK93697.1\|1095615_1097886_+	5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	NA	NA	NA	NA
SQK93698.1\|1098533_1099544_-\|portal	portal vertex protein	Q19UT6	Mannheimia_phage	6.2e-117	60.4
SQK93699.1\|1099553_1101119_-	Terminase, ATPase subunit	A0A0M3LRV4	Mannheimia_phage	1.8e-195	63.7
SQK93700.1\|1101202_1101388_+\|capsid	Probable bacteriophage capsid scaffolding protein	NA	NA	NA	NA
SQK93701.1\|1101409_1102459_+\|capsid	major capsid protein	Q19UT3	Mannheimia_phage	1.4e-87	50.7
SQK93702.1\|1102470_1103121_+\|terminase	terminase, endonuclease subunit	Q19US0	Mannheimia_phage	3.5e-44	45.5
SQK93703.1\|1103413_1103920_+\|head	putative phage head completion	A0A0M3LNL8	Mannheimia_phage	8.1e-33	51.0
SQK93704.1\|1103919_1104129_+\|tail	Probable bacteriophage tail protein X	A0A0M3LPY0	Mannheimia_phage	4.7e-11	45.3
SQK93705.1\|1104130_1104352_+\|holin	holin	NA	NA	NA	NA
SQK93706.1\|1104344_1104863_+	phage-like lysozyme	A0A0M3LPQ1	Mannheimia_phage	1.5e-37	47.7
SQK93707.1\|1104847_1105198_+\|lysis	phage lysis regulatory protein, LysB family	NA	NA	NA	NA
SQK93708.1\|1105372_1105570_+	putative zinc finger DksA/TraR C4-type	NA	NA	NA	NA
SQK93709.1\|1105720_1106143_+\|tail	bacteriophage tail completion protein gpS-like protein	A0A2H4J927	uncultured_Caudovirales_phage	2.1e-18	50.9
SQK93710.1\|1106234_1106630_+\|tail	phage-related tail protein	NA	NA	NA	NA
SQK93711.1\|1106731_1107880_+\|tail	phage-like tail protein	V5YUN9	Pseudomonas_phage	2.0e-55	39.5
SQK93712.1\|1108308_1109682_-	Na+-dependent transporters of the SNF family	NA	NA	NA	NA
SQK93713.1\|1109739_1110375_-	DNA glycosylase and apyrimidinic (AP) lyase	NA	NA	NA	NA
SQK93714.1\|1110554_1111262_-	inner membrane NADH-quinone reductase	NA	NA	NA	NA
SQK93715.1\|1111263_1111887_-	oxidoreductase	NA	NA	NA	NA
SQK93716.1\|1111886_1112963_-	inner membrane oxidoreductase	NA	NA	NA	NA
SQK93717.1\|1112967_1115427_-	electron transport complex protein RnfC	NA	NA	NA	NA
SQK93718.1\|1115427_1116009_-	electron transport complex protein RnfB	NA	NA	NA	NA
SQK93719.1\|1116096_1116675_-	inner membrane subunit	NA	NA	NA	NA
SQK93720.1\|1117022_1118084_-	inner membrane peptidase	A0A2H4UUF9	Bodo_saltans_virus	7.4e-20	31.7
SQK93721.1\|1118283_1118949_+	Uncharacterized protein conserved in bacteria (DUF2057)	NA	NA	NA	NA
SQK93722.1\|1119016_1121173_+	inner membrane protein	NA	NA	NA	NA
SQK93723.1\|1121271_1121814_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	A0A140XBD6	Dickeya_phage	9.0e-22	42.6
SQK93724.1\|1121823_1122759_-	arabinose-5-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	3.6e-42	35.5
SQK93725.1\|1123372_1124044_-	regulator of cell morphogenesis and cell wall metabolism	NA	NA	NA	NA
SQK93726.1\|1125593_1126076_+	molybdopterin biosynthesis, protein C	NA	NA	NA	NA
SQK93727.1\|1126077_1126323_+	molybdopterin synthase, small subunit	NA	NA	NA	NA
SQK93728.1\|1126323_1126776_+	molybdopterin synthase, large subunit	NA	NA	NA	NA
SQK93729.1\|1126830_1129476_-	paraquat-inducible protein B-like protein	NA	NA	NA	NA
SQK93730.1\|1129459_1130542_-	paraquat-inducible protein A-like protein	NA	NA	NA	NA
SQK93731.1\|1130642_1130774_+	Uncharacterised protein	NA	NA	NA	NA
SQK93732.1\|1130893_1131532_+	structural transport element	NA	NA	NA	NA
SQK93733.1\|1131559_1133641_+\|protease	carboxy-terminal protease	A0A0R6PIZ1	Moraxella_phage	5.5e-83	32.3

DBSCAN-SWA_4

1270782 : 1374756

104

Mannheimia_phage(36.59%)

integrase,tail,terminase,lysis,plate,holin,protease,portal,capsid,tRNA

attL 1284971:1284990|attR 1343926:1343945

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQK93919.1\|1270782_1271235_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.5e-25	56.1
SQK93920.1\|1271270_1273136_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
SQK93921.1\|1273189_1274080_-	geranyltranstransferase	NA	NA	NA	NA
SQK93922.1\|1274079_1274349_-	exonuclease VII small subunit	NA	NA	NA	NA
SQK93923.1\|1274507_1275965_+	sulfurtransferase required for thiamine and 4-thiouridine biosynthesis	NA	NA	NA	NA
SQK93924.1\|1275980_1276301_+	Domain of uncharacterised function, DUF446	NA	NA	NA	NA
SQK93925.1\|1276294_1277014_+\|tRNA	tRNA pseudouridine synthase	NA	NA	NA	NA
SQK93926.1\|1277006_1277165_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQK93927.1\|1277311_1277530_+	cold-shock protein	Q9AZD3	Lactococcus_phage	2.2e-11	53.1
SQK93928.1\|1277597_1278044_-	macrodomain Ter protein	NA	NA	NA	NA
SQK93929.1\|1278170_1279946_+\|protease	protease La	NA	NA	NA	NA
SQK93930.1\|1280115_1280649_+	beta-hydroxydecanoyl thioester dehydrase	NA	NA	NA	NA
SQK93931.1\|1280887_1281613_+	30S ribosomal protein S15	NA	NA	NA	NA
SQK93932.1\|1281609_1281744_+	Uncharacterised protein	NA	NA	NA	NA
SQK93933.1\|1282876_1284316_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
SQK93934.1\|1284479_1284956_+	transcription elongation factor greA	NA	NA	NA	NA
1284971:1284990	attL	NA	NA	NA	NA
SQK93935.1\|1284995_1285295_-	23S rRNA methyltransferase J	NA	NA	NA	NA
SQK93936.1\|1285421_1286051_+	ribosomal RNA large subunit methyltransferase J	NA	NA	NA	NA
SQK93937.1\|1286141_1288049_+\|protease	protease, ATP-dependent zinc-metallo	M4QMW8	Micromonas_pusilla_virus	5.0e-115	42.5
SQK93938.1\|1288160_1288988_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	1.4e-13	27.5
SQK93939.1\|1289025_1290363_+	phosphoglucosamine mutase	A0A127AWJ1	Bacillus_phage	2.9e-13	23.4
SQK93940.1\|1290421_1290916_+	phosphohistidine phosphatase	NA	NA	NA	NA
SQK93941.1\|1291128_1291692_+	Late embryogenesis abundant protein	NA	NA	NA	NA
SQK93942.1\|1291768_1293133_-	outer membrane efflux protein	NA	NA	NA	NA
SQK93943.1\|1293849_1295517_+\|tRNA	glutamyl-tRNA synthetase	A0A222YZ70	Escherichia_phage	5.3e-254	77.2
SQK93944.1\|1295594_1296047_+	Uncharacterized conserved protein	NA	NA	NA	NA
SQK93945.1\|1296117_1298208_+	4-alpha-glucanotransferase	NA	NA	NA	NA
SQK93946.1\|1298217_1300413_+	glycogen branching enzyme	NA	NA	NA	NA
SQK93947.1\|1300560_1302540_+	glycogen operon protein	NA	NA	NA	NA
SQK93948.1\|1302562_1303864_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
SQK93949.1\|1303971_1305402_+	glycogen synthase	NA	NA	NA	NA
SQK93950.1\|1305648_1308114_+	glycogen phosphorylase	A0A140XAG6	Dickeya_phage	5.0e-19	54.2
SQK93951.1\|1309097_1309871_-	DNA-binding transcriptional dual regulator	NA	NA	NA	NA
SQK93952.1\|1309961_1310054_+	Uncharacterised protein	NA	NA	NA	NA
SQK93953.1\|1310463_1311051_+\|integrase	phage integrase family protein	A0A0M3LRG1	Mannheimia_phage	3.2e-41	47.9
SQK93954.1\|1311058_1311466_+\|integrase	putative integrase/recombinase	Q19US1	Mannheimia_phage	4.4e-37	56.7
SQK93955.1\|1311462_1311753_-	Uncharacterised protein	A0A0M3LQ35	Mannheimia_phage	5.0e-11	42.4
SQK93956.1\|1311739_1312168_-	Uncharacterised protein	B3GVZ0	Streptococcus_phage	3.0e-12	36.2
SQK93957.1\|1312140_1312302_-	Uncharacterised protein	A0A0M3LTD8	Mannheimia_phage	2.6e-09	85.3
SQK93958.1\|1312303_1312798_-	DNA-directed RNA polymerase subunit alpha	NA	NA	NA	NA
SQK93959.1\|1312817_1314998_-	Probable bacteriophage replication protein A	Q94N00	Haemophilus_virus	2.4e-174	45.0
SQK93960.1\|1315017_1315299_-	Uncharacterised protein	Q775F7	Haemophilus_virus	2.6e-20	55.9
SQK93961.1\|1315515_1315629_-	Uncharacterised protein	NA	NA	NA	NA
SQK93962.1\|1315621_1315873_-	Uncharacterised protein	NA	NA	NA	NA
SQK93963.1\|1315887_1316082_-	Uncharacterised protein	NA	NA	NA	NA
SQK93964.1\|1316065_1316494_-	Uncharacterised protein	NA	NA	NA	NA
SQK93965.1\|1316508_1316778_-	Uncharacterised protein	NA	NA	NA	NA
SQK93966.1\|1316843_1317248_-\|tail	tail fiber protein	Q19UQ3	Mannheimia_phage	1.7e-28	48.8
SQK93967.1\|1317250_1317790_-\|tail	Probable bacteriophage tail protein gpI	Q19UQ4	Mannheimia_phage	1.4e-51	55.2
SQK93968.1\|1317779_1318694_-\|plate	phage-like baseplate assembly protein	Q19UQ5	Mannheimia_phage	8.5e-97	61.2
SQK93969.1\|1318690_1319029_-\|plate	baseplate assembly protein W	Q19UQ6	Mannheimia_phage	5.8e-19	49.5
SQK93970.1\|1319028_1319568_-\|plate	phage P2-like baseplate assembly protein	A0A0M3LPY9	Mannheimia_phage	4.7e-39	58.0
SQK93971.1\|1319681_1322387_-\|tail	phage-related tail protein	V5YUN9	Pseudomonas_phage	1.1e-75	33.5
SQK93972.1\|1322457_1322610_+	Uncharacterised protein	NA	NA	NA	NA
SQK93973.1\|1322663_1323131_-\|tail	Probable bacteriophage tail completion protein	F1BUP9	Erwinia_phage	4.3e-28	45.2
SQK93974.1\|1323145_1323358_-	DnaK suppressor protein	F1BUS2	Erwinia_phage	9.0e-10	50.0
SQK93975.1\|1323505_1323829_-\|lysis	phage lysis regulatory protein, LysB family	NA	NA	NA	NA
SQK93976.1\|1323813_1324332_-	phage-related lysozyme	A0A0M3LQY4	Mannheimia_phage	2.6e-34	46.8
SQK93977.1\|1324312_1324540_-\|holin	holin	NA	NA	NA	NA
SQK93978.1\|1324544_1324754_-\|tail	Probable bacteriophage tail protein X	R4JDL4	Burkholderia_phage	1.6e-06	46.3
SQK93979.1\|1324753_1325263_-\|capsid	capsid completion protein	A0A0M3LPQ0	Mannheimia_phage	1.5e-31	47.0
SQK93980.1\|1325382_1326033_-\|terminase	terminase, endonuclease subunit	Q19US0	Mannheimia_phage	1.1e-45	46.1
SQK93981.1\|1326037_1327078_-\|capsid	major capsid protein	E5E3W8	Burkholderia_phage	4.5e-94	53.1
SQK93982.1\|1327137_1327965_-\|capsid	Probable bacteriophage capsid scaffolding protein	Q19UT4	Mannheimia_phage	1.1e-71	55.4
SQK93983.1\|1328131_1329910_+	Terminase, ATPase subunit	A0A0M3LRV4	Mannheimia_phage	1.8e-215	64.7
SQK93984.1\|1329919_1330930_+\|portal	portal vertex protein	Q19UT6	Mannheimia_phage	8.7e-119	61.1
SQK93985.1\|1331608_1332628_+	dihydro-orotate oxidase, FMN-linked	NA	NA	NA	NA
SQK93986.1\|1332627_1333452_+	TrpH	NA	NA	NA	NA
SQK93987.1\|1333547_1334156_-	Uncharacterised protein	NA	NA	NA	NA
SQK93988.1\|1334283_1335678_-	fumarate hydratase	NA	NA	NA	NA
SQK93989.1\|1335913_1336348_+	DNA polymerase III subunit chi	NA	NA	NA	NA
SQK93990.1\|1336432_1336603_+	Uncharacterised protein	NA	NA	NA	NA
SQK93991.1\|1336568_1337186_+	Uncharacterized protein conserved in bacteria	NA	NA	NA	NA
SQK93992.1\|1337212_1337527_+	ASCH domain	NA	NA	NA	NA
SQK93993.1\|1337549_1338188_+\|tRNA	valyl-tRNA synthetase	NA	NA	NA	NA
SQK93994.1\|1338235_1341100_+\|tRNA	valyl-tRNA synthetase	A0A1V0SK04	Klosneuvirus	4.6e-149	37.5
SQK93995.1\|1341134_1341410_-	hydrogenase 2 accessory protein	NA	NA	NA	NA
SQK93996.1\|1341540_1342971_-	fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase	A0A0P0IR83	Acinetobacter_phage	5.5e-34	38.3
SQK93997.1\|1343001_1344003_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.4e-49	37.1
1343926:1343945	attR	NA	NA	NA	NA
SQK93998.1\|1344055_1344442_-	anthranilate phosphoribosyltransferase	NA	NA	NA	NA
SQK93999.1\|1344490_1345072_-	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.0e-34	39.4
SQK94000.1\|1345084_1346641_-	component I of anthranilate synthase	A0A0B5J984	Pandoravirus	4.7e-23	33.2
SQK94001.1\|1347023_1347521_-	ferritin like protein 2	NA	NA	NA	NA
SQK94002.1\|1347536_1348025_-	ferritin iron storage protein	NA	NA	NA	NA
SQK94003.1\|1348585_1348813_+	Uncharacterised protein	NA	NA	NA	NA
SQK94004.1\|1348923_1349943_+	phosphate transporter subunit	A0A222YW41	Synechococcus_phage	5.4e-52	40.1
SQK94005.1\|1350033_1350981_+	phosphate transporter subunit	NA	NA	NA	NA
SQK94006.1\|1350982_1351831_+	phosphate transporter subunit	NA	NA	NA	NA
SQK94007.1\|1351840_1352608_+	phosphate transporter subunit	G3M9Y6	Bacillus_virus	7.3e-17	30.5
SQK94008.1\|1352684_1353380_+	two component system DNA-binding response regulator	NA	NA	NA	NA
SQK94009.1\|1353376_1354642_+	sensory histidine kinase in two-component regulatory system with PhoB	W8CYF6	Bacillus_phage	1.6e-24	31.0
SQK94010.1\|1354868_1355009_-	Uncharacterised protein	NA	NA	NA	NA
SQK94011.1\|1355462_1356884_-	exonuclease I	NA	NA	NA	NA
SQK94012.1\|1356896_1357772_-	cell division protein MukB	NA	NA	NA	NA
SQK94013.1\|1357775_1358684_-	Uncharacterized conserved protein	NA	NA	NA	NA
SQK94014.1\|1358753_1363286_-	Structural maintenance of chromosome-related protein	NA	NA	NA	NA
SQK94015.1\|1363285_1364020_-	protein involved in chromosome partitioning	NA	NA	NA	NA
SQK94016.1\|1364168_1365503_-	condesin subunit F	NA	NA	NA	NA
SQK94017.1\|1365652_1366585_+\|tRNA	C32 tRNA thiolase	A0A0U2S5Z2	Escherichia_phage	1.3e-121	80.5
SQK94018.1\|1366586_1366916_+\|tRNA	tRNA 2-thiouridine synthesizing protein E	A0A2H4J8B6	uncultured_Caudovirales_phage	5.8e-24	51.9
SQK94019.1\|1367034_1367244_+	molybdenum-pterin binding protein	NA	NA	NA	NA
SQK94020.1\|1367406_1369818_+	Probable TonB-dependent transport protein	NA	NA	NA	NA
SQK94021.1\|1369921_1372702_+\|protease	putative zinc protease	NA	NA	NA	NA
SQK94022.1\|1372824_1374756_-\|tRNA	threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	3.8e-131	38.4

DBSCAN-SWA_5

1767905 : 1794808

Haemophilus_phage(57.14%)

head,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQK94386.1\|1767905_1769750_+	abc transporter atp-binding protein	W8CYL7	Bacillus_phage	1.2e-28	28.1
SQK94387.1\|1769875_1770154_-	copper chaperone MerP-like protein	NA	NA	NA	NA
SQK94388.1\|1770596_1772240_+	phage protein	B7SDN0	Haemophilus_phage	5.9e-250	78.6
SQK94389.1\|1772243_1773881_+	Mu-like prophage FluMu protein gp29	B7SDN1	Haemophilus_phage	3.6e-199	66.4
SQK94390.1\|1773867_1775145_+\|head	SPP1 family phage head morphogenesis protein	B7SDN5	Haemophilus_phage	1.8e-121	52.7
SQK94391.1\|1775255_1775741_+	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	1.3e-32	50.3
SQK94392.1\|1775994_1777044_+	bacteriophage Mu I protein GP32	B7SDN9	Haemophilus_phage	2.5e-108	61.0
SQK94393.1\|1777043_1777964_+	bacteriophage mu T protein	B7SDP1	Haemophilus_phage	7.9e-127	71.9
SQK94394.1\|1778003_1778309_+	Uncharacterised protein	B7SDP3	Haemophilus_phage	1.6e-20	50.0
SQK94395.1\|1778318_1778750_+	Mu-like prophage protein GP36	B7SDP4	Haemophilus_phage	6.1e-37	60.9
SQK94396.1\|1778733_1779396_+	Mu-like prophage protein gp37	A0A0M3LQJ7	Mannheimia_phage	9.3e-45	45.0
SQK94397.1\|1779367_1780858_+\|tail	bacteriophage Mu tail sheath family protein	A0A0M3LQC3	Mannheimia_phage	2.4e-149	63.6
SQK94398.1\|1780867_1781239_+	Uncharacterised protein	A0A0M3LRV6	Mannheimia_phage	6.8e-37	65.0
SQK94399.1\|1781238_1781580_+	Uncharacterised protein	A0A0M3LSI2	Mannheimia_phage	1.8e-20	50.5
SQK94400.1\|1781847_1782003_+\|tail	phage tail length determination protein	NA	NA	NA	NA
SQK94401.1\|1782120_1783986_+\|tail	phage tail length determination protein	A0A0M3LPB6	Mannheimia_phage	2.9e-67	35.2
SQK94402.1\|1784138_1785473_+	putative phage virion protein	F6MIL2	Haemophilus_phage	1.4e-108	45.6
SQK94403.1\|1785462_1785714_+	bacteriophage Mu P family protein	A0A0M3LPS4	Mannheimia_phage	1.8e-20	63.0
SQK94404.1\|1785706_1786591_+	bacteriophage Mu P family protein	F6MIL3	Haemophilus_phage	8.7e-115	73.4
SQK94405.1\|1786600_1787236_+\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	1.6e-62	57.2
SQK94406.1\|1787305_1787656_+	phage GP46 family protein	A0A0M3LQK5	Mannheimia_phage	2.4e-44	74.1
SQK94407.1\|1787670_1787961_+\|tail	Mu phage tail protein gp47	F6MIL6	Haemophilus_phage	2.5e-34	78.7
SQK94408.1\|1787965_1788736_+\|tail	Mu phage tail protein gp47	F6MIL6	Haemophilus_phage	1.5e-83	61.6
SQK94409.1\|1788732_1789329_+	Uncharacterized protein conserved in bacteria (DUF2313)	F6MIL7	Haemophilus_phage	2.0e-67	64.0
SQK94410.1\|1789332_1790241_+\|tail	phage tail fiber protein	Q7Y5S2	Haemophilus_phage	5.0e-25	79.0
SQK94411.1\|1790237_1791311_+\|tail	tail fiber protein	H6W7W2	Escherichia_phage	2.5e-07	30.9
SQK94412.1\|1791304_1791940_+	HP1	Q94MX9	Haemophilus_virus	2.2e-27	50.0
SQK94413.1\|1791932_1792241_+	Uncharacterised protein	F6MIM0	Haemophilus_phage	1.6e-15	48.3
SQK94414.1\|1792599_1792719_+	mu com-like protein	NA	NA	NA	NA
SQK94415.1\|1792780_1793626_+	D12 class N6 adenine-specific DNA methyltransferase	F6MIM2	Haemophilus_phage	2.6e-116	71.0
SQK94416.1\|1793683_1793902_+	Uncharacterised protein	NA	NA	NA	NA
SQK94417.1\|1794271_1794808_-	antimicrobial peptide transporter subunit	Q6GZ03	Mycoplasma_phage	2.4e-06	33.3

DBSCAN-SWA_6

1818504 : 1827051

Escherichia_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SQK94440.1\|1818504_1819158_+	BexA	M1HXU1	Acanthocystis_turfacea_Chlorella_virus	3.2e-05	25.7
SQK94441.1\|1819297_1819621_+	superoxide dismutase, Cu, Zn	Q9MC02	Salmonella_phage	8.6e-12	56.1
SQK94442.1\|1819948_1820227_-	putative heavy metal transport/detoxification protein	NA	NA	NA	NA
SQK94443.1\|1820236_1820599_-	putative mercuric transport protein MerT	NA	NA	NA	NA
SQK94444.1\|1820573_1821683_-	transglutaminase domain-containing protein	NA	NA	NA	NA
SQK94445.1\|1821935_1824359_+	dimethyl sulfoxide reductase, anaerobic subunit A	A0A077SK27	Escherichia_phage	9.1e-223	50.6
SQK94446.1\|1824369_1824987_+	oxidoreductase, Fe-S subunit	A0A077SL61	Escherichia_phage	5.8e-73	57.8
SQK94447.1\|1824988_1825828_+	oxidoreductase, membrane subunit	A0A077SK59	Escherichia_phage	8.5e-19	31.1
SQK94448.1\|1825939_1826551_+	twin-argninine leader-binding protein for DmsA and TorA	A0A077SLS7	Escherichia_phage	2.3e-21	32.5
SQK94449.1\|1826550_1827051_+	ferredoxin	A0A077SLP0	Escherichia_phage	1.5e-10	30.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage