CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
LS483508	Mycoplasma mycoides subsp. capri strain GM12 genome assembly, chromosome: omosome	4 crisprs	NA	0	1	1	0

1. LS483508

CRISPR-Cas detection and classification

Crispr_ID: LS483508_1

• CRISPR_ID: LS483508_1
• CRISPR_location: 140463-140546
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LS483508_1

Consensus_repeat	Method
AAAAAACACTGGAATTCCATATA	CRISPRCasFinder

spacers of LS483508_1

>1.1|140486|38|LS483508|CRISPRCasFinder
TTTTTTTCTAAATTACTAAAAAACAATCTTTTTACGAA

CRISPR arrays and Neighbor proteins around LS483508_1

CRISPR arrays

The CRISPR arrays of LS483508_1

>merge|LS483508|1|140463-140546|CRISPRCasFinder
AAAAAACACTGGAATTCCATATATTTTTTTCTAAATTACTAAAAAACAATCTTTTTACGAAAAAAAACACTGGAATTCCATATA

>LS483508|1|1|140463-140546|CRISPRCasFinder
AAAAAACACTGGAATTCCATATA	TTTTTTTCTAAATTACTAAAAAACAATCTTTTTACGAA
AAAAAACACTGGAATTCCATATA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LS483508.1|SRX63855.1|145740_146139_-|transcription-antitermination-factor-NusB	unknown	unknown	gnl|CDD|273891
LS483508.1|SRX63843.1|132048_134883_-|preprotein-translocase-subunit-SecA	unknown	unknown	gnl|CDD|237258
LS483508.1|SRX63840.1|127803_130293_-|lipoprotein	unknown	unknown	gnl|CDD|223496
LS483508.1|SRX63850.1|142482_142758_+|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX63851.1|142747_143317_+|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|238980
LS483508.1|SRX63852.1|143318_144125_-|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	unknown	unknown	gnl|CDD|224110
LS483508.1|SRX63846.1|136699_137716_+|CCATC--recognizing-type-II-restriction-modification-system-(MmyCVI)-adenine-DNA-methyltransferase-subunit-1	unknown	unknown	gnl|CDD|225927
LS483508.1|SRX63854.1|144329_145739_-|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl|CDD|272979
LS483508.1|SRX63844.1|134973_135549_+|Xaa-Pro-dipeptidase	unknown	unknown	gnl|CDD|376491
LS483508.1|SRX63849.1|140623_141823_+|ATP-binding-protein	unknown	unknown	gnl|CDD|224292
LS483508.1|SRX63841.1|130463_131234_-|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX63853.1|144124_144340_-|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl|CDD|273536
LS483508.1|SRX63857.1|147288_148158_-|deoxyribonuclease-IV	unknown	unknown	gnl|CDD|179214
LS483508.1|SRX63858.1|148150_148903_-|riboflavin-kinase	unknown	unknown	gnl|CDD|214901
LS483508.1|SRX63845.1|135623_136535_+|~5'-3'-exonuclease	unknown	unknown	gnl|CDD|214682
LS483508.1|SRX63848.1|138600_140184_+|AlwI-family-type-II-restriction-endonuclease	unknown	unknown	gnl|CDD|312855
LS483508.1|SRX63856.1|146150_147263_-|hypothetical-protein	unknown	unknown	gnl|CDD|234767
LS483508.1|SRX63847.1|137705_138623_+|DNA-adenine-methylase	unknown	unknown	gnl|CDD|223415
LS483508.1|SRX63839.1|125483_127574_-|hypothetical-protein	unknown	unknown	gnl|CDD|173412
LS483508.1|SRX63842.1|131217_131934_-|putative-membrane-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LS483508.1|SRX63855.1|145740_146139_-|transcription-antitermination-factor-NusB	gnl|CDD|273891	TIGR01951, nusB, transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. [Transcription, Transcription factors].	9.6032e-29
LS483508.1|SRX63843.1|132048_134883_-|preprotein-translocase-subunit-SecA	gnl|CDD|237258	PRK12903, secA, preprotein translocase subunit SecA; Reviewed.	0
LS483508.1|SRX63840.1|127803_130293_-|lipoprotein	gnl|CDD|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.00707e-13
LS483508.1|SRX63851.1|142747_143317_+|dephospho-CoA-kinase	gnl|CDD|238980	cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.	5.1944e-35
LS483508.1|SRX63852.1|143318_144125_-|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	gnl|CDD|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	9.92721e-90
LS483508.1|SRX63846.1|136699_137716_+|CCATC--recognizing-type-II-restriction-modification-system-(MmyCVI)-adenine-DNA-methyltransferase-subunit-1	gnl|CDD|225927	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.28918e-66
LS483508.1|SRX63854.1|144329_145739_-|exodeoxyribonuclease-VII-large-subunit	gnl|CDD|272979	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. [DNA metabolism, Degradation of DNA].	2.41865e-150
LS483508.1|SRX63844.1|134973_135549_+|Xaa-Pro-dipeptidase	gnl|CDD|376491	pfam01205, UPF0029, Uncharacterized protein family UPF0029.	1.35261e-43
LS483508.1|SRX63849.1|140623_141823_+|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	6.69095e-46
LS483508.1|SRX63853.1|144124_144340_-|exodeoxyribonuclease-VII-small-subunit	gnl|CDD|273536	TIGR01280, xseB, exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA].	6.53311e-06
LS483508.1|SRX63857.1|147288_148158_-|deoxyribonuclease-IV	gnl|CDD|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	4.01977e-127
LS483508.1|SRX63858.1|148150_148903_-|riboflavin-kinase	gnl|CDD|214901	smart00904, Flavokinase, Riboflavin kinase. Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase, which converts it into FMN, and FAD synthetase, which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme. the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases. This entry represents riboflavin kinase, which occurs as part of a bifunctional enzyme or a stand-alone enzyme.	2.89707e-39
LS483508.1|SRX63845.1|135623_136535_+|~5'-3'-exonuclease	gnl|CDD|214682	smart00475, 53EXOc, 5'-3' exonuclease.	3.91482e-70
LS483508.1|SRX63848.1|138600_140184_+|AlwI-family-type-II-restriction-endonuclease	gnl|CDD|312855	pfam09491, RE_AlwI, AlwI restriction endonuclease. This family includes the AlwI (recognizes GGATC), Bsp6I (recognizes GC^NGC), BstNBI (recognizes GASTC), PleI(recognizes GAGTC) and MlyI (recognizes GAGTC) restriction endonucleases.	3.65725e-31
LS483508.1|SRX63856.1|146150_147263_-|hypothetical-protein	gnl|CDD|234767	PRK00448, polC, DNA polymerase III PolC; Validated.	0.00935916
LS483508.1|SRX63847.1|137705_138623_+|DNA-adenine-methylase	gnl|CDD|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.99589e-27
LS483508.1|SRX63839.1|125483_127574_-|hypothetical-protein	gnl|CDD|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	2.42944e-12

Protein sequences

>LS483508.1|SRX63848.1|138600_140184_+|AlwI-family-type-II-restriction-endonuclease
MRKVEEHKPISFSTTMRNPERMSQFIACMKDFEGHILTDELIMQIVRKVIKNKLYKPNYIKENCAINNIYNDESSTFSNVQLDDIVNNSPQNHKEAGFAKGWSSRFDTWYKLCKEFGFIYYDMDKKIEISSSGHMLCDAYLLNSKYDDLNNSGKKIQKIFLNALMKYQTNNPFRRNLNQNAPIPLLLNVLNLLALNSYSTGLHRREIPFLMCWENNDYERLYEFIINFRNKYGFKASDEIIYEECLKLLKSSNKKRFKMSQIIKEGVDDFIRKLRITGIFSLRGLGRFVDINKLESESVDYIIKNYTKYNIFSNKYDFYKYMSEIDTKILEFQEIAANHEINNIRIKTLRKISQKYSVEQIHKELRNLQLNKNSEDEYFKLIDSPTRLEFLTSIAIIQKFPQYEIHPNYSIDDEGNXTFTAKGGVADIEIYDTNLNSIVEVTLMKSRQQAANEIPAITRHLKKQRDDYGNNNVFSLFIAPNIHEDTVYMCEFTRYKEKLGIYPYTIVDFVQKIQTTNSLLELEYNLN
>LS483508.1|SRX63847.1|137705_138623_+|DNA-adenine-methylase
MKNNIRSPFFYVGDKYKIMPQIVKFFPEKINNYYEPFLGGGSSAMYTKANKYFLNDINKSIIDLHKYLSSYSKNKNLLLNNLFKLIKKYRLSCSYLSITVPDELKKKYVKTYYSKFNKESYIELRNDYNKKNDSLKLYLLLIYGFNHMIRFNQQGKFNLPVGNVDFNKNVYQALMTYLEFADDNKIEFSNNDYIDFIKEIDFKEGDFIYLDPPYLISNSEYNRNWTIIDEQNLYDLIDNLDRKKVYFGLSNMLTHKGRKNHLLEKRMKKYYIHEIKSNYISRFDNKIKKDSKEVYITNYEKSRRT
>LS483508.1|SRX63846.1|136699_137716_+|CCATC--recognizing-type-II-restriction-modification-system-(MmyCVI)-adenine-DNA-methyltransferase-subunit-1
MRLTSRRYIGSKAKLLDWIFSNIDNNVKGNSFFDIFAGTGCVIEKALTSYDSVIINDILSSNKVVYDAFWGDIVINIDIINKYKLMFNSLDSIIDHNYFSINYGDKYFGVNDSKKIGYIRELIENDFKKNYINRREKNILLASLIYSIDKIANTVGHYEAYRKVEIIDNRFKFDLIDIPNKNINKKVEIYKEDANRLARKIYSDIVFVDPPYNSRQYSRFYHVIENLVEWEKPELFGIALKPAPQKMSEYCRNNAPAVFDDLITNLNCKYIVVTYNNTYNSKSSSSKNKIKLEEILNSLNKRGKTQIFSSDHRFFNAGKTSLPNHKEYLFITEVTCEK
>LS483508.1|SRX63845.1|135623_136535_+|~5'-3'-exonuclease
MITNETKPILLIDGYHLLHKGYYGTLKRTIVSKNKDGIVINAIYSFVANILKFVQSDRYHSVIVAFDFDENCWRKELYSEYKAKRKPTPIDLVPQLQIARDFLTSANISWYEKYNYEGDDVIGSICRIANKLGYDVCILTNDKDIYQLVNNKTSIITNISKKEKTKIIKPQQVYEHFLCQPNQVADIKAILGDQSDNIKGVKYIKRKQAENLINKYENVENILAHINELNEPLKTIISENKQLIIDNKKITKILTNVKLGRINFKPTKITYYGLIRFLKEQEMYAFIKPIRRYLDRTNKNLKK
>LS483508.1|SRX63844.1|134973_135549_+|Xaa-Pro-dipeptidase
MKTIKKEIYKNEFIIKNSKFITIATNINSKDELEEFLNKYSDINATHNCYAYMIYDQKLIGGYNDDHEPKNTAGKPIFNVISKNNLVNIVILVIRYFGGIKLGASVLTRTYSNAASLIIKDLEIIEIKTYYQYLISFDIKNLKLVNQWINQNNIEIISKDFSLNVVFKIRSTSKITSCNFFKIIDFKTIKN
>LS483508.1|SRX63843.1|132048_134883_-|preprotein-translocase-subunit-SecA
MVSDKRLLKKFGKIADKIIALEPQMRQLKDEDFILKTQEFKQMLEDGKSLDDILIEVYAVAREAARRVLGLNAYKVQLIGGIILNSGDIAEMRTGEGKTLTGIFPAYLNALSGKGVHIVTVNEYLSKRDSEINGQVFDLLGISVGLNGSSLTKTEKREAYNKDITYTTNAELGFDYLRDNMVSDYSLKVQRKLNYCIIDEADSVLIDEARTPLIISGGTSTRINLYKAANNFALTLKEHDDLDIDLESKQVYLNEQGMKKANEFFSLKNLFAIENTEIFHLIMNALKAQFAFKEGVEYTVRDNEILLIDQFTGRIMHGRSYSDGLQQALQAKENVDIEEETVTLATITYQNFYRLYSKIAGMTGTAKTEEEEFIKIYNTRVIQTPTNKPVIRKDEPDLTFGTKNAALKKLVEDVLEAHEKGAPILIGTTSVESSEQIARYLKKANLKFETINXKNHDREAEIVSKAGEIGAITLATNMAGRGTDIKLAKGVAELGGLRVFGVERNEARRIDNQLRGRSGRQGDPGLSRFYISMDDDLMMRFTAPKTRQRFKALGDDYIKSKMFTRAVTNAQKKLEGMNFDQRKNVLDYDNILAQQREIIYAQRDDILEANDLSVVIEKMQITAAYELIEKHSTLVHGEKTINKKELLDAIDGTLVPKNKFRVDDFNNKEKMDLAVEIAEGMMQLYKARISDIPDDVIIGMERKIILDSFDKYWTKHLDIAGKLKSGIYLQQYAQNNPLAIYVEQATDLFNKMKINIANEVVENLANVILRVVEDEEQREERIEVTDKDIEEILFETGLQPSDINNKAINQRFDELEEEFKDDKQKLRRLRIQRDVMLGLVLELERRAEMIISPQNDQQAITQLIKELQNDIDIASITIDQIHQNFNNMVEQINDPEKLKHLVIAKDVLLQLVARMDDIKEQEKQTRKKKKKKPHEDESSKTKIG
>LS483508.1|SRX63842.1|131217_131934_-|putative-membrane-protein
MQKRTIKSDTIFYSVILFLNLLTNFIYWITHAFNVVYVDEPTNLDIVLALDSASIAIWGLWISTFYAGICLYHSFIKKQLYQAYLLQLFIISMLISTGLIFIGISIINKTANINNWSALLRVVNVHFLLPTSMLLYLIFFRTNMIISKKSKLVGMWRILAVGLSYISWITYRTVPNVQVNLINKPFLYTSLQPSNIGWAIFMSLSFSSFILYFLTYLIIVLINNKINDKYGGCDAKTI
>LS483508.1|SRX63841.1|130463_131234_-|hypothetical-protein
MLKRFNQFRQQRSFKLELIISSILLFFAISCLVLYFITKSVGLYNKKTLSADVIFLQDITFLSEWYAVFVMIFCSFKISRMLTSKQVYLYKYTEYSFTSWSIFIFLLYIAGFIMGQAIINDDKDFPTLYRALAIHVFIPITWITYFILFPLNDQKTKKQLWLGCLQTFTILCFYSLWLLLRLLPGISLDDKIWINKIPYSFISPYNIGVIKYIFVNIGIFSVFIGGYILTYYSNKFIYKRITTSKNIDKTKEIITK
>LS483508.1|SRX63840.1|127803_130293_-|lipoprotein
MKKLLTILGSIMISTSGAALVVACKTPATKQPTNSNENTNQNEPTRPSEKDKDQTDPKKPVEPVNPSSKPENNQTKPTENYDPKTYKDTTIFNRHFVSGNPSSWVGTIHNSSFIYGSPFKPNNETKPNESTTPIEPKKPVDPTPSTKPNDNNRNDSNSNQSRPLTPLQPSIPTNKPETKPVSPTTTWYSVYNDSATGADINLNPTKEQIEKEEKRLEDWVKEYLDKNKRENQALFDYLIKIEYDRIFRDSPTGADINFYLTKEQIEAENKKQEDQLKAILDKNYKDNFANLMAIKASQTIKELFSDEFSDLVKQAVQRYKHHGDTHARESAKITEEIFSDEFSNKVKEAVERYKKHGDTHARESAKATIELFSDEFSDLVKQAVQRYKHHGDTHARESANAAEKLFNDKYNLVNEYKHNLETKLAKLNEEVNTHILERTRIEKEYNNKEKELEELATNNLVTLKKEYETGKQNLESRKTENETKLDRITLELPKLKDQKEKIKEEIKDSTELLEEAKLLLKENQDKQVEHNKVLNQAKDLEHQIDSINKQIESKNKLVTDNNNKEKELLDIEKELDKELSEEKVIIKQLDDENKLYEKIIDDLKKETYDSDLWFYDYGDWTLWTGFNHNKIARLKNYIYGNKELKKEVPNIIKNLEKELEITKQQNIEKIKQLKEQNTKIQAEISEITKSLEPLNAEKNKIDKQLSDINSEVVKTNKNIELYTNNLRTLEEEITSNSELQKQIIAQIDQYTSDQLSLEKQKEEILNSIKEFENSTNKIILESKQQYEDELLKLEKQAHSLESKEXEKIKEIEKTIAKLKESIKLLNQKY
>LS483508.1|SRX63839.1|125483_127574_-|hypothetical-protein
MKKLLAILGTIAISSTGASLVIACNNPNSKPSVEPDKTTPKNKPKETAKEETDKNSTNKTDKNSKESSDKNNTVLTKRSWNSVFNDSLTGYDIIYKLDETVLQNNKHYKFFVNSSSNLVSDLFDDKFAEEVKEAKNRWDKIQAKKTKLEKERLYKEFTTSSANATEDYFKTLEKIAELEAKAEAKKKELEKWEAKLAEEFKNSASSTTEDYFKTLEKISELEAKAKEKEKEAENRTKAEEKAEKEKVDNLIDAEINAELASDLTEDYFKTLEKIAELEAKAEAKKKELEKWEAKLAEEFKNSASSTTEDYFKTLEKISELEAKAKEKEKEAENRTKAEEKAEKEKVDNLIDAEINAELASDLTEDYFKTLEKIAELEAKAEAKKKELEKWEAKLAEEFKNSASSTTEDYFKTLEKISELEAKAKEKEKEAENRTKAEEKAEKEKVDNLIDAEINAELASDLTEDYFKTLEKIAELEAKAEAKKKELEKWEAKLAEEFKNSASSTTEDYFKTLEKISELEAKAKEKEKEAENRTKAEEKAEKEKVDNLIDAEINAELASDLTEDYFKTLEKIAELEAKAEAKKKELEKWEAKLAEEFKNSASSTTEDYFKTLDTTKEVSEWNSEKEKLIQLISNINKQVEELKESGKDINSVIVTVESNLESYKNNIKEHKNSKDFWRFEMWSHWLEDVLANLKKQN
>LS483508.1|SRX63849.1|140623_141823_+|ATP-binding-protein
MVIKRDQYLDKLISKKHNGRVKIITGINDPLNVKYHNPLELYNYFLNKTTNKEIQYYVFIDEIQNCQAIKNPYFKEDSKLIDFTGVLIGLMLHENIDIYVTGSNSKMLSSEIVTEFXDRGDEIKVYPLTFKEIYESKQVKNFDLKTYFIYGGMPFVYKIDSSNERAIYLKNLFKTTYIRDILERYNVNNDQLILETLLNFISSNIGSLTNPLKLANRFLSEQKTKISSNTISKYIRYFEESFIISKAKRYDVKGAKYFTTPLKYYFTDIGLRNAWLNFSELDRSHILENIVYNELKIRGFNVDVGYLLYDQKSSDSRNIHNLEIDFIANLIDLKYYIQVALNIXEADKKEQEIRPLLKVNDNYKKVVIVYDDIFEHYDNNGILYIGLKKFLLDPEALNS
>LS483508.1|SRX63850.1|142482_142758_+|hypothetical-protein
MSYYYRHNFSFSYHGLQRAKERLKLKDKKDYEVKEICLEHIRNSTKSFMSGNEIYISASNTNIFFVVNKTNNLIITVTEISAEKQLRMHGI
>LS483508.1|SRX63851.1|142747_143317_+|dephospho-CoA-kinase
MVYKMIIGIYGKIGSGKTYISNKFINFHPEFKIINADNVSKKLLEDSKIKSKLFEIDNNIIKNDIVDKKYLRKKLFTNKKLKQQVDSLLWPLISKQIQKEIKNNPNTNYIIEAALLFELNLTNLDLIVKVKSSLLKSIFRVLKRDKTNIRDILRIRRNQNKSIKRKKPDLVISNFYQLEFYIQKNRLLI
>LS483508.1|SRX63852.1|143318_144125_-|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase
MKLRLDEYIYKNNLTQSRNKAKEHILNKEVYVNNIAIIKPSFLVDSNDLIEIRSTKLEYVSRAYEKLKKAINKWNIDLTNKICLDIGASTGGFTQCCLDNNASLVYAVDVGTDQLHSSLLNNLKVINMSQYNFRNAKKQDFLKSIDFVCCDVSFISLEKIFLPLKDILEFNTSGVFLIKPQFELQPKNIKNGRINSKLDHKQAILKVISYANNNSFDVINLDYSPILGNKKQNIEYLAYVIKKENNYKIWKEDQINQLVNIAWKELKK
>LS483508.1|SRX63853.1|144124_144340_-|exodeoxyribonuclease-VII-small-subunit
MSNKSKSYDELISEIKEDTKKLSSNEISVEQAMEIFEQNIEKIKLAKEKLTQYKGQIYKVMQDDELEEFKD
>LS483508.1|SRX63854.1|144329_145739_-|exodeoxyribonuclease-VII-large-subunit
MEKILTVQELNEALKTLIENKQEFKDIYVQGELSNLTFNKSGHIYFSIKEQDAAINCMMWKTNAYKIQSLNLEDGMQIICYGRLTYYIPTGRVSFEVRDIKIHGIGDLQKIFEQRYKELEQKGWFDPNLKKPIPEFVKNVGIITADSGAAIYDLIRTIHRRLPLINIFLFPAQVQGDKAEKDIANKIKQANDFKVQLDVLIVGRGGGSYEDLWAFNELEVLQAIKNSQIPIISAVGHEPDWVLSDYVADIRAATPTAAGELVSKSIIEIKNQLKHYYQNYKTLILNKLDFFDEKLNNYKKEQTKYIKNNFSFKYLQLKQLSIDNTKWTKNKINLVIDKLENYKQSINNSTLHIINSQNKTLKNYLIADEQKILNYLKKQISEFNYTISSFKGHINQILKYEELSFNTLENKLNSLDPLKPLQNGYSIVTNLNHQKIRSYKQVKLNEDLKVILTDSKLTVTIKEVKINEQ
>LS483508.1|SRX63855.1|145740_146139_-|transcription-antitermination-factor-NusB
METKISFSKKRKLLIQTFYKYQLLNASIDYIHQDILDDVQNINNKDVLFEIEQIAKKQTDLINHININVSSSWKWDRIPAVIRAILIVGTYEILYTNTPKPVTINEMVKYVKEIEPDFDYKFVNAVLDKLVK
>LS483508.1|SRX63856.1|146150_147263_-|hypothetical-protein
MKKLLSIITGFSLLITPSLFAISCSSKVQVISKFDDITSIKNTGAFKNNQAFISRNELKEIVNSNNTTNSSTASSTAVMTSTSTTSTGTQPNNNDAKYASERLKALAANNFTKNKKQAWDSLQNTSMTFYKKVEPTAVNVLGYEQITKDNVEKLEKNLKTVFLVFKDNTKETEKLEVELLPEINNGNKVIDNGSLYLDLLEKPENLKLANQKSIIEVLRPEITKIKVVLQNTKNNNSTNKEDIKNTEVFNLLIKQLSIYLANTVKYFNSESGIITTNPTFSYKTRSNQIYDYIVKNKKDELYKKLETAFTSEFNKINFIDIFKDFQFDENNSNDNKKITTKIIKSSTNSSTSSSNSSTTTTTEPSSTTTR
>LS483508.1|SRX63857.1|147288_148158_-|deoxyribonuclease-IV
MNKVLLGCHVSMNKQNNYLVGSVNEAISYKANTFMIFTGPPQSTLRTNTNHLYINQMHELMNSYKIDAKDLVVHAPYIINIANSVDQNKWKFAVDFLIQEIKRCEEIKIPTLVLHPGSHTTGNYKDSLNQIIKALDIVSNYQVNVKIALETMSGKGTEVCSKLEDFKYILDNVKNKDKVGVCLDTCHLHDAGYDLSKWDEFKEQMKQNFDLNKVLCIHLNDSKNMISSHKDRHANIGYGYVGFDTLVNVVFDKDFSNISKILETPYIDKKPPYKIEIEDLLNKTFTNRL
>LS483508.1|SRX63858.1|148150_148903_-|riboflavin-kinase
MNNQIIALFCDFKYITTKLLNKFNKNQLIIFGYSLNKDDFDYICSDYQLEIFKNQNYKFIDLKNENIDQLVKKYQISKIHITKSFKNYDHFLNFFPNTITEDDLLDINNIKKALINADINTFYKIAGFNYTFSGIVTHCNHLGRTIGFPTANILTNDSLVIKNGVYLVKVIIGDKNIQFGMGDHWINRNNLKVFETYIFNFSNDIYNSKITFELLDYIRDNQKINSLDQLKTLLNNDKKECLKRLEKYNE

Crispr_ID: LS483508_2

• CRISPR_ID: LS483508_2
• CRISPR_location: 228543-228633
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LS483508_2

Consensus_repeat	Method
AATAATTAAGGTGTATTTCCACCTTTTTT	CRISPRCasFinder

spacers of LS483508_2

>2.1|228572|33|LS483508|CRISPRCasFinder
GTTCATTATAATTTTATCATAAAAATACCTACG

CRISPR arrays and Neighbor proteins around LS483508_2

CRISPR arrays

The CRISPR arrays of LS483508_2

>merge|LS483508|2|228543-228633|CRISPRCasFinder
AATAATTAAGGTGTATTTCCACCTTTTTTGTTCATTATAATTTTATCATAAAAATACCTACGAATAATTAAGGTGTATTTCCACCTTTTTT

>LS483508|2|2|228543-228633|CRISPRCasFinder
AATAATTAAGGTGTATTTCCACCTTTTTT	GTTCATTATAATTTTATCATAAAAATACCTACG
AATAATTAAGGTGTATTTCCACCTTTTTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LS483508.1|SRX63927.1|234188_235988_-|alpha-glycosidase	unknown	unknown	gnl|CDD|200477
LS483508.1|SRX63931.1|242098_242575_+|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX63926.1|233559_234189_-|beta-phosphoglucomutase	unknown	unknown	gnl|CDD|213672
LS483508.1|SRX63928.1|236106_237903_-|alpha-glycosidase	unknown	unknown	gnl|CDD|200477
LS483508.1|SRX63916.1|217699_218710_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|224094
LS483508.1|SRX63915.1|216439_217684_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223674
LS483508.1|SRX63925.1|231767_233450_-|LppA-family-lipoprotein	unknown	unknown	gnl|CDD|274602
LS483508.1|SRX63924.1|231584_231731_+|hypothetical-protein	unknown	unknown	gnl|CDD|319818
LS483508.1|SRX63922.1|228755_229637_+|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl|CDD|319818
LS483508.1|SRX63917.1|218723_220424_+|peptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|223521
LS483508.1|SRX63923.1|229670_231368_-|LppA-family-lipoprotein	unknown	unknown	gnl|CDD|274602
LS483508.1|SRX63919.1|222310_225412_+|lipoprotein	unknown	unknown	gnl|CDD|173869
LS483508.1|SRX63912.1|212583_212850_-|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	unknown
LS483508.1|SRX63918.1|220425_222294_+|ABC-transporter	unknown	unknown	gnl|CDD|185037
LS483508.1|SRX63914.1|215727_216222_-|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX63921.1|227219_228524_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224292
LS483508.1|SRX63913.1|212963_215654_-|alanine--tRNA-ligase	unknown	unknown	gnl|CDD|234701
LS483508.1|SRX63930.1|240254_242045_+|lipoprotein	unknown	unknown	unknown
LS483508.1|SRX63929.1|238160_239960_+|lipoprotein	unknown	unknown	gnl|CDD|270303
LS483508.1|SRX63920.1|225829_227125_-|ATPase	unknown	unknown	gnl|CDD|224292

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LS483508.1|SRX63927.1|234188_235988_-|alpha-glycosidase	gnl|CDD|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
LS483508.1|SRX63926.1|233559_234189_-|beta-phosphoglucomutase	gnl|CDD|213672	TIGR01990, bPGM, beta-phosphoglucomutase. This model represents the beta-phosphoglucomutase enzyme which catalyzes the interconverison of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha <-> beta) while the 1-phosphate is not. A separate enzyme is responsible for the isomerization of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorylysis of maltose (2.4.1.8), trehalose (2.4.1.64) or trehalose-6-phosphate (2.4.1.216). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterized by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold. beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily. The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes (TIGR01509). The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	4.37984e-71
LS483508.1|SRX63928.1|236106_237903_-|alpha-glycosidase	gnl|CDD|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
LS483508.1|SRX63916.1|217699_218710_+|ABC-transporter-permease	gnl|CDD|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	8.01919e-47
LS483508.1|SRX63915.1|216439_217684_+|ABC-transporter-permease	gnl|CDD|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.14716e-44
LS483508.1|SRX63925.1|231767_233450_-|LppA-family-lipoprotein	gnl|CDD|274602	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family. Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa.	5.94143e-131
LS483508.1|SRX63922.1|228755_229637_+|Cof-type-HAD-IIB-family-hydrolase	gnl|CDD|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	9.2288e-59
LS483508.1|SRX63917.1|218723_220424_+|peptide-ABC-transporter-ATP-binding-protein	gnl|CDD|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	9.63871e-117
LS483508.1|SRX63923.1|229670_231368_-|LppA-family-lipoprotein	gnl|CDD|274602	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family. Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa.	2.18256e-174
LS483508.1|SRX63919.1|222310_225412_+|lipoprotein	gnl|CDD|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.09858e-11
LS483508.1|SRX63918.1|220425_222294_+|ABC-transporter	gnl|CDD|185037	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional.	9.49851e-78
LS483508.1|SRX63921.1|227219_228524_-|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	6.65034e-56
LS483508.1|SRX63913.1|212963_215654_-|alanine--tRNA-ligase	gnl|CDD|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
LS483508.1|SRX63920.1|225829_227125_-|ATPase	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	6.34649e-51
LS483508.1|SRX63929.1|238160_239960_+|lipoprotein	gnl|CDD|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	0.00464598
LS483508.1|SRX63924.1|231584_231731_+|hypothetical-protein	gnl|CDD|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	8.14322e-10

Protein sequences

>LS483508.1|SRX63921.1|227219_228524_-|ATP-binding-protein
MENMIIPRDFYLNQLLDKKDNGRVKVITGIRRCGKSELLFTLYKDYLLSTGVKKKQIIALQLDGDENIKYRDPLALGSYIRKQIKSKSKRYYVFIDEIQFCYAVFNPYVKEKEPSITFVDTVLGLMKIPNIDLYITGSNSKMLSSEILTQFSDRGDQIHVQPFSFSEIYHLFENSQDALAHYLNYGGMPEIYKLKTEEQKVQHLKQLFKTTYIRDVLLKYDIKNEEQILDKLLDFVSSVVGSLVSFNNLSKQLAANDQIKISPNTIQKYLSYFEESFVLSNARRYDIKGSEYFRSPSKYYFADIGXRNARLNFRQIEDNHLTENVIYNELIKRGYNVDVGMVEYEVNKANTRQKRQAEVDFVANLGHKRYYIQYADNINTKEKREQETNSLLRIKDNFKKIVVVKDNIIAKHDDNGILYLGLKQFLLEPNAIDI
>LS483508.1|SRX63920.1|225829_227125_-|ATPase
MQINRDYYLNKLISKKNNNKIKVITGIKNVGKSYLLFNIYKNYLLSIGINEDQIITLKLDKWENANYRKLDSLYNYIKQRTSNPNKTYYVFIDEIQYCETIKQTNQSGYEQILTFVDVILSFYDNPNIDLYITGSNSKMLSSDILTNFRGRSSQIKVYPLVFSEVNYLFKNDDEALDHYINYGGLPEVYLNQTIEEKKEYLTNQFEEIYLKDIKERYNIQKEITILETLLKFVSSAIGSFTNPTKLQNRFKSEMKTDISSNTIANYLSYFENSFILSHIKKYDVKGNKHFSTINKYYFTDIGLRNACINYRQIESNHIIENIIYNELVKRNYSVYVSSVEYQTNSENKRTTKQLEVDFVIQKASKKYYIQFAMNVYTKQKKEQEINSLLRIKDNFKKIVIVYDDIEPRYDENGILYIGLKQFLLDENIIDF
>LS483508.1|SRX63919.1|222310_225412_+|lipoprotein
MKKVLGMTLLGSIIATAVASAVSCSVGISLDKILNRKNSNTRVLRELTNYSLANLNSATNNTSNDADIIANLQDVLLAVNNHDHYEGALAEYWDHNKDSDYWKFRLRKNAYWTKIENSKQVKGDLITGQDLFNTFRYVLNKNNLALTTEHFLTNFKYVPQLMDFIDKLSDPKYDKSNGQAKPDKLYDSRFNKDLPGDLRTNELRSSYWIDRAILAFNIEPTNEEKAKNLALDLSMSTKQLAKKSFEEGKIVDNGKSKEKNDNSNGLDSSIFDIGFHLSKKISYFESVISYLAFAPIPEVALLYAEDSGQKSNIYAGTNYGKPLARKSGYNGLWYSGPYVIQDYFPGSNLNLTKNEFYYNKENVHIEKILYSYVNKADAATRRFLFETGDVSSTRINANDLAGYKKYVGSDESNPVFEGTNVLKQKPTTTWAFGFNFNTKETSIYDDIKLDQEGSLVPTKRRVRTPEEDSILNRAIALKSLRIMTRFVLNRSLYAKFFSEAKDGNNHPVSSQLRNTFTSKYVSTYNDKEHKVLDKKSQNTVADYADFLAKDYYDITKYDDNNKKLNNTNSVSSTPVRTRRATPSGTSESSSASTEQQSWSDWMIKVLQKHSLYDESRLTSWANRFGKVKDKKDLKNTEKVSVYSEGNDAFLENDLLAFTAFLKEDQLQSKNGGQDGTFDLKRDPNKVEFKNPELAKEFGKLIGVYDKDFDPKKDYQNQDSKLSTLYKKINLLKQQVKEDLKNTSGITSNKPITIPFLLDPTGADDFKIKIQRLFGAFNYLVRNKGNGDIDSPFVFDIDKPIDQSAYLKQRRDSKFGLGAFGWSPDYDDPTNYLATLKYGGVYEHIQGWKKLFNGSELKTTNGSNKKGIKLTLKKSDGTSEKAFKELKDXLQFFTNELTEIDENEVDIYKRYTRLAQLENFYTLSSAIIIPTHTHQADTLPIISYLDEFSKPTWPTGSHARRLVGVRMFDKIVTKEQFKKQKENFDKETLNGYRSVYPKTFDSKSNKNIYFDQFKGNWREEWKKEYESKNKKLNK
>LS483508.1|SRX63918.1|220425_222294_+|ABC-transporter
MIKKKNEAILKVRDLLIEFGNGRNKLKAVKGVTFDVYKGETFGLVGESGSGKTTIGRAIIGIQPISDGAIYFENKLLRGKSPDVYKINQKIARHLYIMQQNQLTTSLSLNDYSNEFKRVYYKYVQSKFFDFKTQELKDYEDGKSRIIKEGVNLNTXKLVSVKKNANLSIVIQAITDNLKRLLKIIRLQEKASRITKNISKHTSVKVELQDAINKYQDFVHDSILKVKDLENTIYNTLQEMLAIRNDVNEGKYTSVTKFFDQMGSRLKLVIKSQKLITPQLEDASHDQLMNLALTCPKYKNNYYLKKLKQRIEYLNLNNKTKLAQEYESVIQTVENSDFYDNLKTAEIFKSPNKKELKENKKDMQMIFQDPSSSLNERMAVEEIIKEGLDNFPELYSNDEVKKAYQQWFNQKNPENKIVEISEIDKKDIKRFLINQLLETVGLLPEHLSRYPHEFSGGQRQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVVRFATDRIAVIYRGDIVELAESNELFDLPLHPYTRSLLSAIPLPDPVQESKKVHFVYQPEVEHHDYLVDFPKWVEVSKNHFVYANEXXIKAYKKQIKAYKEQLKNK
>LS483508.1|SRX63917.1|218723_220424_+|peptide-ABC-transporter-ATP-binding-protein
MKNVILSIKDLVVKFRVRSKVLTSIRNISFDIYDGETVAIVGESGSGKSVLTKTLTNMLESNGYIANGSIMYYPNKATRENESAVFKKDTDLVEFHKNSLESESRKGIKKYNNKKIKDALLTIKELEESTIESLNLKIDELQQKADLLKKYEFTNSTKKLVKRNEYLEQIKQLKEQIEWKKDPKKLDFEIQQLEKTIQTAKKEIYNFKTVNIYKKFRYFQIINLINKVNNNQLEDINKLEPHIKWLDEIEYKNNFESLALEILYDIRSNQTKKLDQEKLETLKELWDFIKRFNFWIKRSTDKNLQHLRGGTIATIFQDPMTSLNPLLSVGYQISEVLRNHSKLNRAEAKVEAINLMKRVGIPNAEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICDEPTXALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGTTQDVFFNSKHPYTWALLSSLPQLGTKGEELYSISGTPPSLFKEIKADAFAPRNTFALAVDYKYEPPMFKISDTHYAKTWLLDPRAPKIKRPKQLNNLKKAVSDSKVGE
>LS483508.1|SRX63916.1|217699_218710_+|ABC-transporter-permease
MKTKQLEQPDFSALLDSEREAFFKRHGLDIYQIDXSLFELVGSQAQTSETIITKPYSYWKAVGKILITSKVFIICSIILLALLLTSIIVPYGKEAIPLKTPGVTQEHPSAQHWFGLGRNGEDYWIEIWLGLRSSLSFAFVMTFLQLSIGIIMGLIWGYYRKLDILFYQLTSLILVIPQLILIIVIMSVFGIGYWPMILGIVIQAWIGPAFSIRILVLSIRDADYNIASITLGTRSDKIIRKNVLPKILPVLIQVSTFSIPTAIAIESTLAYFDRGFVDGKVNTSLGKILQSIMQSSEWQVYPHLIVLPILFICIISTLFFLVLKVFADSLDPKNHR
>LS483508.1|SRX63915.1|216439_217684_+|ABC-transporter-permease
MKSTLKTKQEVLNLNSELLLDDFSLLNETNQQHKVSKWTTFKYWYYDTSANIYKYFLRHPLYGYSFKRILYGLITLLLSIIILYVVIRLITPDTKYLPPDIEKTGLSRAQQDKLLEDRMKRFGVYGPLIPQILTYLKNITPFIPKQIVLGSEVTILQNGNAIIDSSKLITETRWVYLGVTTATTIAEEGSDALSIFLKAMPYSFAIGSVSVLISYALAILIGVRAAKKKGKLFDNVFNGISALLLAIPSIVIIIGTFIFSVAVLGNSGIYNTGSFATRFWPIFAIVVINLPGIATFVRRYIVDEMTVDYAKFALAKGTSSNKTYYVHIFRNAGVRIIRSIPSEIILTVFGSSMIVETQWAIPGMGRLIKESAGGNDFFVFLGFTVLSSFVSIFAKLLADLVHVLLDPRVSLTKD
>LS483508.1|SRX63914.1|215727_216222_-|hypothetical-protein
MKKSKVFKELKDIDKFTKEQHEKQVNKSISQVYDSDDFKMNFYDYQQAKKLRLIGWLIVFLIFIIGSLIGVLVGYLTLNVSSLDNWKGINYFNVLYTTILFFIGFIIGVIKNRQATKFFNDRRRRYQKTLELSEAKLIRLKKIFYLSGLLMLVLTIILFLVFKI
>LS483508.1|SRX63913.1|212963_215654_-|alanine--tRNA-ligase
MKKLSTNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTNSQKAIRTNDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKNYFDIDKDKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQGPCGPNTEIFYDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLERFASIFQNTPTNFETDIFYPTIKKVEQLTNDQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLIDKKTLVEQTIKDEEEKFLKTLSKGYDLLENIIKTKNTVSDKDALLLFESYGFPIEQTIEISELSNVTVDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKVESEFTGWSETSRDNAKVIYMFTDQKQVESITDQEAFVILDKTPFYAEKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNIHRIKVQGTLKVNDLVNCRVDEEKRIYTMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEKIKNKIDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKFGDFSSELCGGTHVNNTSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLLKNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYKDLTPSLNKDNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENNFVVVAVSQSLQNKYKAIDIFNNLEGYETKGGGNANLAQGKFVKK
>LS483508.1|SRX63912.1|212583_212850_-|BspA-family-leucine-rich-repeat-surface-protein
MKKLLTFLSSFGLIATSSLLVIXCKNNISTXKKEDHKDNEHMPSDQPQENKTKKEKPKPKRLATEEEKKKLETIFKEQENAFGTFPYL
>LS483508.1|SRX63922.1|228755_229637_+|Cof-type-HAD-IIB-family-hydrolase
MKLKDLNLKRLILIDLDGTTLTNQNDQIHKITKKAILDAQKKGHVVCIVTGRPYRAVEHIYKELKLTTLLANFDGAHIHDPNNKLMKRVVLPINCEIIKQIINEPVIKGNVENILIEYYDKSLLWKTDKELEDFFHLNKAKNSKDFQFIKASPYTDWKSPSNNLVLKLKSDKHKDEVIRVLTKYQDAIKIQSDILYGITTSKTKPVITLTNKNADKGFASIFLAQYYNKDIRDVIAFGDQLNDLEMLKTVGCSVAMKNGVNSLKFVAKGITHYTNDEGGLGHYLNLLLAGKEV
>LS483508.1|SRX63923.1|229670_231368_-|LppA-family-lipoprotein
MRKFNKLFLTILPISSISAFSVVSCTTNTKNNNQIPTIPNNKKPENQTQPEQPSDKKPESTEEHTNKKPNENTNDQKQPNNSEKSDAEPNPGKPENKPNNSHNPKQPEQPKKPEHNDSNSNNNTNNNSNADQPQGDEPQDEPWNKVDFSDINKLDKEVKFEFFTTYSRMDAKSAWVQIQGRQPAIFKEIIFKGKNEILNRYEIEFDSQKVPNIVDEKGTIDNVGIKFSKNGKSKTREFVFTGFRKLENKVDKGKNKDEYIKPKTNIDKSLSGIFPSLVAYMLLYSEETQSNNKYDRNIKQSGNVINFDELKNKNLELFGEYFVGFSVGTKELLFDYKNEYNKIYKDKIVAARYDDINGILELEVQVSNTDEYENRNDPTKSYKFTFKGFRSIDFDNPNKNVLSISLQQRFLKKLVDDKILKTIIDQLVQHNHFNHKAPVSNINNSNLKGELFEKLTVDIIDDENHLYKSSQTLKIDLFKKENNNKSILGLKNQMSIYPFHSRITKDSIKNIYITINNKNSTKELELEAEIEIPIYSSTLTDLTDHTYAAEKPLKITVKQSVKLNQ
>LS483508.1|SRX63924.1|231584_231731_+|hypothetical-protein
MLKTVGCSVAMKNAVNSLKFVAKGITHYTNDEGGLGHYLNLLLDGKEV
>LS483508.1|SRX63925.1|231767_233450_-|LppA-family-lipoprotein
MRKFNKLFLTILPISSISAFSVVSCTTNTKNNNQIPTIPNNKKPENQKQPNDKKPGSTEEHTNKKPNENTNDQKQPNNSEKSDAESNPGKPENKPNNSHNPKQPEQPEHNDPNSNNTTDNNNSTNNDEPQADQPQHNQEDDSSNNTEEIFSEIDXLKKEIEFNFYTTYKNKDALTSWIEIKSRKQAIFKEVIFSRNIDILEKYQIEFDSQNDPEIIKENGIISNVKIKFTKNGKSKVYEFTFTGFKEEDKIDSKNNKDIYIKQKDKIDVKLAGLYPSLLAYMLLYVEQSGTNIYDRDIKQSGNVINFDDLINNNQDLFDYNFSGFSVGTKDLLFDYNRKDEKLYKDKIVEAKYDDINGTLGLKVEISNRDDNHSNESTITKEFNFNGFRKIDIDNYKNNPFTFSLLPKNLSEIIKNDKIRKTLEESGVDIHKNQVDEFGGFYSKDNIWETLIFKNLLVDLTDNDHHTYRSNKTLKVDFSGSDRNYKSILGLKSNQSLYPFHTIITKDSIKNILVTIKDKKFTLDFELHIPIYSTSFSNLLSHAGSDKTLLVRVSQTTKID
>LS483508.1|SRX63926.1|233559_234189_-|beta-phosphoglucomutase
MKFKGVIFDLDGVITDTAPLHYLAWSQAVKTIGITNLDKSFLDKLRGISRKESLQVILDFYNLKLDQSQFNNLLEQKNLLYKKALQNIDKTWILPGIIDFIKDLKKHNIKICLGSSSFNAKDILTKLELINEFDYLVDPSEIKHSKPASDIFIKASQLLGLDVKECVVIEDAIAGVQASLNANIFCIGINVEANIKLKSTADLSINLLK
>LS483508.1|SRX63927.1|234188_235988_-|alpha-glycosidase
MKVIDRVAIHHQQRSNMAYCYDKDYIHIILRTKKDDLKKVVIHHGDPFLRGHYLLGSDYIDLKPKEMTKSGSTKLYDYWFVEVKPEFKRLTYFFELFGIEDDHCYFGEKGFYETDDFKMINTGGWGFNYAWMNPNDVYQAPDWINDTIWYQIFPERFANGNKNNDPKNTLAWNSTDPSYNSFFGGDLQGIIDHLDHLVELGVNGLYLCPIFKAKSNHKYDTIDYLQIDPNFGDKKTFKKLVEECHKRNIKVMLDAVFNHAGYWNKFWQDVLKNQENSKYKDWFYINKFPLQEKIIDKNNQEKTVNNYYTFAFHEVMPKINTTNKDAKKYLLKVANYWIKEFDIDAWRLDAANEVDHEFWRDFRKTVNKNKPIYILGEIWGYAHPWLKGDQFDGVTNYMITSPICELVTKWIKPSKFNDKTTEVLNNYPRNVFKGMLNCLTSHDTTRLLTLCNNDVRKFKLAYSLVFMLAGAPSIYYGDEIGLDGAHDPLNRKCMNWNKDQWNHEIFNYLKKLIQIRKQNPVLGSYGTLKYTLIDDDKNYLEFIKYDDNNTYLILVNNSDEKLEVKKEELVNKIDLISDQIQTNNIVSLEPISMKVFKIK
>LS483508.1|SRX63928.1|236106_237903_-|alpha-glycosidase
MVNIERAAILHIPKSNMAYCYDKDRIHIVLRAKKNNLKEVIFHCSEPFEPKVVVETNNYDLNLEKTAMRKVGSTEIYDYWFISVKPPFKRLSYYFELASENERIYYSQKGFYPLEKIKSVQTSQFSFPWMNEIDIFDVPTWVKDTIWYQIFPERFANGNPEISPKNVLAWNSEAPAANNFFGGDLQGIIDHLDHLVELGVNGLYLCPIFKARTNHKYDTIDYFEIDPHFGDKKTFKXLVEECHKRNIKIMLDAVFNHFGYWHPYWQDVLKNQEKSKYKDWFYINKFPVEKLDENLTENTSLDLNYYTFAFTGYMPKVNTSNPEVKKYLLEVARYWVEEFDIDAWRLDVANEIDHHFWREFRQVVNQKKRTYILGEVWSDSNPWLKGDQFDGVMNYVLTRQIIDFVATREIDVRRFKNRVTNVIFLYQKNIWPGMFNCLASHDTARLLTLCENDPNRLKLAYSILFTLSGSPSIYYGDEIGINGEHDPDCRKCMIWDKSQWNLDIFNHLKNLIKXRKENPTIGSYGFLEFKSYDEEKQYLEYIKTDTKTNYLILVNNSDNQIEVEHADLINNTELLTNEKQTNSKVVLKPFSMKIFKLN
>LS483508.1|SRX63929.1|238160_239960_+|lipoprotein
MKKILTMLTSLVVVGGSALTVLACKTTNNTDIVVQANDKWVPIYQQAANKVNKRFEEQGYKWRVKLKEIGLFDEKKLIDGRGVRDKGISDIFAIPLDRYPQYINQNTLKDLTEYIKKDLIKTKEDEDRFGIKIDNSKSGVDAIKLEKNVNTWKTVLGSDLKGNRLYGMIPMSIENMIWLFDEDRLGIKKEKGDDNKLYAYLVGSELEKVKNQLEKYEEKDGVGKKLIGKPKASIENLIILNKAQTNDYKFENLNEIEDKENVNKGAPLAFVDAGASFQGGMFLNSILNKRADDISKLKADNSSLGMVWVNKNKSLNSTNINDFDSIWENDMFKEDFNQTTQTIVDYVKSLGGHITEIYGGAAGQINQILDDALRDGTIAMTLVGPWEVSSKLETMRKAPKNKGHKFGFASIGDISFNKGKNKLTGFAGGYGWGIKSSISNTKLKNNKGEEMDKTSAAIEFIKEISKKDYATEMAFVDGKISAYSDVADFLIEELKQGNNIPPLNEKGKKKTNEELKAEKENRQIIGEAYRSIIDGYEKTGKDADVAPRADNELFGIYWEAYTTAFGSTFNKKQNKGMKEKFADIFRTTYKKQKSQYKFH
>LS483508.1|SRX63930.1|240254_242045_+|lipoprotein
MKKILTMLASIVVVGGSALTVLACKTRNNTDIVVQANDKWMPIYQKAADKVNKRFEEQGYKWRVKLKQIDIFAEKGLIDLRGVRDKGVSDVFAVPLDRFPQYLNQNTLKDLTEYIKTGIAGDSEAKERFGLDIVEGKTGVDAIKLTKNQNSWKTALGSDIKGKRQYGMIPMSIENMVWIFNENRLGIKKEKVGDKEYSYLVGTEVDKIKDKLDKYDDKSQANGRLKDKPKASIENLIKLNESQTNAYKFEDSKEIDTSKVNKGAPLAYIDAGGSFHGGMFLNSILNKRAEDIAAEKSESSSLGMVWVKKGKAINSTNKEDFDSIWENEKFKNDFDNTTKTIIDYVKSLGGHINEIYGGAAGQIGQILDDALRDGTTVMSLVGPWEVSSKLETMKKAPKNKDGKFGFASIGDITFNGDSKLTGFAGGYGWGIKSSISNLKLKNNKGEEMDKTAAAIEFIKEISKKDYATEMAFVDGKISAYKDVADNLIKELKEGTNIPELNDKGVKKTTEEIKAEKENRKIIGEAYESIVKGYEKTGKDXDVAPRADNEMFGIYWGVYGTALGSTFNKKQNPGMKKQFSEIFRTTYESEKLKYKFH
>LS483508.1|SRX63931.1|242098_242575_+|hypothetical-protein
MVVFKTNIKKYNVYFILAICLVFVVMLSTAMLIDYRLIVVKQQNLSKEALKNPHAYFLKTWMIRYLLNVVLVIIFAIYTTLAMNRITVGYVYIGLWLVIWFGFAFGELILTKKITYPSIISIVLFVLVIISFYFIIKDISELKRSLRYQKMKKREYRF

Crispr_ID: LS483508_3

• CRISPR_ID: LS483508_3
• CRISPR_location: 257503-257599
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of LS483508_3

Consensus_repeat	Method
AAGGAATTTCTGTGTATTTACACA	CRISPRCasFinder

spacers of LS483508_3

>3.1|257527|49|LS483508|CRISPRCasFinder
CTTTTTCCTTATGAAAAAATCTTAAAACAAGATAATGCTCAATTAGCAT

CRISPR arrays and Neighbor proteins around LS483508_3

CRISPR arrays

The CRISPR arrays of LS483508_3

>merge|LS483508|3|257503-257599|CRISPRCasFinder
AAGGAATTTCTGTGTATTTACACACTTTTTCCTTATGAAAAAATCTTAAAACAAGATAATGCTCAATTAGCATAAGGAATTTCCGTGTATTTACACA

>LS483508|3|3|257503-257599|CRISPRCasFinder
AAGGAATTTCTGTGTATTTACACA	CTTTTTCCTTATGAAAAAATCTTAAAACAAGATAATGCTCAATTAGCAT
AAGGAATTTCCGTGTATTTACACA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LS483508.1|SRX63937.1|252682_253402_+|GntR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225099
LS483508.1|SRX63949.1|265486_265846_-|~50S-ribosomal-protein-L20	unknown	unknown	gnl|CDD|179959
LS483508.1|SRX63946.1|263065_264058_-|spermidine/putrescine-ABC-transporter-permease	unknown	unknown	gnl|CDD|224097
LS483508.1|SRX63942.1|257726_258347_+|chromate-transporter	unknown	unknown	gnl|CDD|224970
LS483508.1|SRX63936.1|251055_252660_+|alpha-glucosidase	unknown	unknown	gnl|CDD|200472
LS483508.1|SRX63945.1|260264_263081_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|270381
LS483508.1|SRX63950.1|265864_266056_-|~50S-ribosomal-protein-L35	unknown	unknown	gnl|CDD|234676
LS483508.1|SRX63947.1|264057_265113_-|spermidine/putrescine-import-ATP-binding-protein-PotA	unknown	unknown	gnl|CDD|213267
LS483508.1|SRX63943.1|258346_258964_+|chromate-transporter	unknown	unknown	gnl|CDD|376780
LS483508.1|SRX63932.1|242589_245007_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
LS483508.1|SRX63941.1|257226_257448_-|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX63948.1|265176_265293_-|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX63944.1|258941_259901_+|CAAX-protease	unknown	unknown	gnl|CDD|377910
LS483508.1|SRX63939.1|255344_255815_-|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX63940.1|255830_257186_-|leucyl-aminopeptidase	unknown	unknown	gnl|CDD|376407
LS483508.1|SRX63938.1|253430_255224_-|oligoendopeptidase-F	unknown	unknown	gnl|CDD|272947
LS483508.1|SRX63933.1|245021_247562_+|maltose-ABC-transporter-permease-protein	unknown	unknown	gnl|CDD|226354
LS483508.1|SRX63935.1|248756_251054_+|glycoside-hydrolase-family-65-protein	unknown	unknown	gnl|CDD|237517
LS483508.1|SRX63934.1|247563_248649_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|226359
LS483508.1|SRX63951.1|266081_266627_-|translation-initiation-factor-IF-3	unknown	unknown	gnl|CDD|234582

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LS483508.1|SRX63937.1|252682_253402_+|GntR-family-transcriptional-regulator	gnl|CDD|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.28366e-22
LS483508.1|SRX63949.1|265486_265846_-|~50S-ribosomal-protein-L20	gnl|CDD|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	2.69096e-60
LS483508.1|SRX63946.1|263065_264058_-|spermidine/putrescine-ABC-transporter-permease	gnl|CDD|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	1.89248e-47
LS483508.1|SRX63942.1|257726_258347_+|chromate-transporter	gnl|CDD|224970	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism].	3.30206e-27
LS483508.1|SRX63936.1|251055_252660_+|alpha-glucosidase	gnl|CDD|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
LS483508.1|SRX63945.1|260264_263081_-|ABC-transporter-permease	gnl|CDD|270381	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This group represents the periplasmic substrate-binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.23697e-82
LS483508.1|SRX63950.1|265864_266056_-|~50S-ribosomal-protein-L35	gnl|CDD|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.6801e-14
LS483508.1|SRX63947.1|264057_265113_-|spermidine/putrescine-import-ATP-binding-protein-PotA	gnl|CDD|213267	cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter. PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.97841e-156
LS483508.1|SRX63932.1|242589_245007_+|ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.55031e-56
LS483508.1|SRX63938.1|253430_255224_-|oligoendopeptidase-F	gnl|CDD|272947	TIGR00181, Oligoendopeptidase_F_homolog, oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (, with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
LS483508.1|SRX63944.1|258941_259901_+|CAAX-protease	gnl|CDD|377910	pfam07751, Abi_2, Abi-like protein. This family, found in various bacterial species, contains sequences that are similar to the Abi group of proteins, which are involved in bacteriophage resistance mediated by abortive infection in Lactococcus species. The proteins are thought to have helix-turn-helix motifs, found in many DNA-binding proteins, allowing them to perform their function.	9.21363e-43
LS483508.1|SRX63940.1|255830_257186_-|leucyl-aminopeptidase	gnl|CDD|376407	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase.	1.03554e-138
LS483508.1|SRX63943.1|258346_258964_+|chromate-transporter	gnl|CDD|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	4.84696e-14
LS483508.1|SRX63933.1|245021_247562_+|maltose-ABC-transporter-permease-protein	gnl|CDD|226354	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism].	7.47328e-88
LS483508.1|SRX63935.1|248756_251054_+|glycoside-hydrolase-family-65-protein	gnl|CDD|237517	PRK13807, PRK13807, maltose phosphorylase; Provisional.	0
LS483508.1|SRX63934.1|247563_248649_+|ABC-transporter-ATP-binding-protein	gnl|CDD|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	3.8589e-149
LS483508.1|SRX63951.1|266081_266627_-|translation-initiation-factor-IF-3	gnl|CDD|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	6.17492e-69

Protein sequences

>LS483508.1|SRX63941.1|257226_257448_-|hypothetical-protein
MNSNKIKIIKEQQTRSLNNANDSFKKIVVVYEDIIPWHDNDGIYYVGLKEKSFLILILTIILNFIILIKFLYN
>LS483508.1|SRX63940.1|255830_257186_-|leucyl-aminopeptidase
MLKFNDKKEELTLVCLTDVKNKKYVVDTDLSTSFISEEKTIYMLIKKDQKDLFRKLKIAFKNFVLENKYNINIDVDSFFNLLNECDCKEKLINTIYETIAFETFDKVSYKKDNKPNEVVYNLLTSFDVKDLEQKEAIKMEFVNFARMLQDTPPNIATSEYLAEKVVQKAKEIEGIKVTVLGKKEATKLGMNLFLAVNAGSPYEPQAVVLDYVGDENEPKKALVGKGITFDSGGYNLKPAKYLEGMKFDMSGAAIMLSTVMALAKMKAKVNVVGIGMFTDNRIGSTATLPQSVVKSMNGLTVEIDDTDAEGRLVLADGITYVIREKQATEIWEASTLTGSVVSALGSYATGVFTHCNKRWQLVESISEFSGERMWRLPLYEEHLEEVRNDAINADITNATKNYEAESSKAASFLNEFREDKPYVHFDIAGTDSIKGRGQGVLVRTLFEIFNK
>LS483508.1|SRX63939.1|255344_255815_-|hypothetical-protein
MKLKNWTFYKAKQFVKLNESNEILKDLAVLVLRPDINKEKTLLAIGLDKKVVNSLIIDLQNKVFEENELFEIFKENIGFVSTEEISEIDAKGLNLSTPIHPDNIKSIIKIYNLFLNVEPIEFDTKDYQDLETIQNQEDVFTNVDFENIPLPALLPS
>LS483508.1|SRX63938.1|253430_255224_-|oligoendopeptidase-F
MKRPEALKEYKWDFDYLYKNQDEWKKDLDYLVEISKEFKNFKNKLHEKETFLKCLDLEEKVDFITNKLSTYTRMGDTNQADEVYRTLEALLMNVLQDIEIETSFISPETKKIGFETISKWLKETKDYQRYLYGYKKFFEQAKHILSEHDEELLSKISKGYTAISGMYDTLAYADRQEETINYKGVDQVLTNSLFLEILQDSDPIKDQDLRLKASEIFSKNFSLKKHSFALIYEGILQSDHEDTKLRNYDSSLQASLSSDSVSVDIYLKLLEVGKKYIKPLEDFLLLTKKHFKLDKFYPSDRQLKLVKEYNQTFTVEQAKEHIKKALSILGEEYLKNLEIAWGPNKIDYYEDTNKRDGAYSTGGHGVDPIILMNWDDKLNSVNTLAHECGHSVHTLFSEQNQVYPLSQYPIILAEVASTINEHLLFDYMYKNAKLKEEKIYLLQKRIFNLVSTFYRQIQFADFEYRASQLVSKQTPLTSEVLNNLFKEVETDYGYKVFDKLDDNIKSGYGWPRISHFFHSPFYVYKYAIDVTASYKLYDDIKNGNIQTTLDFLKAGGHKEPLEIMLDAGIDFNKEQTYLPLINGISEHIKELEELLKE
>LS483508.1|SRX63937.1|252682_253402_+|GntR-family-transcriptional-regulator
MQDKKNKEITERQKIVNYLLDLIEHKKVDLKTPLPSEYFLVTKFKVSRGTVRSAFSDLKTKGLIKSSKGAGYFINPDFSFNRIKSIRNQLLSNKQEVIIETELDTSNLITIIHKLHLNLDINPDDYFSYIKVXYVDDLPVRYAKSFINKNLFENEIDSEKIRSSLIEYLEQNNIEPFKLTCVLESKLKDQMTRNLLVDNHQDYVICRYSILYDKDDNIVEITQHTINIDHFETSYIKYL
>LS483508.1|SRX63936.1|251055_252660_+|alpha-glucosidase
MANYWWKNTVVYEMYLQSFKDSNNDGIGDLDGAIEKLEYLKELGIGAIWLTPIYDSPLVDNGYDISNYQSINKIYGGLEKFKKFVDKANELNIGIIMDLVLNHTSDQHEWFKQSRSSKTNPYRDYYIWRDQPNDITSAFGGSAWTYDETTNQYYFHMFAKEQPDLNWENPKVREEIAKMVKWWCDFGIMGFRLDVIELLGKKIDQKILSNGPMLHKYIQDLRXNSWDSNEFLTVGECWSADIDHAIQYSNEKNEEFSMVFNFEPITSFFNKINKYKTMDVDFLEFKQIYQKWQQGLHNKGWSGLFLSNHDLPRMVSRYGNDHKYRIDSAKTLLTTFFLMQGTPFIHQGDEIGMTNVKWTDLNKYKDVEIKNTYQSEVLEKQVLTYDEFIDGILVNSRDHARTPYQWDDSLYAGFSNHQPWIDINDNYKEINAKNDLKNPDGVYHYLKKLIKFREESSYSQLIIDAKFELLDPNNDKLFAYTRIDQNKSIKIIANWSDEQVDISHLINDYNKIILNTQVDFKQNTLKPWQTIIVE
>LS483508.1|SRX63935.1|248756_251054_+|glycoside-hydrolase-family-65-protein
MKTNIDVNIKRLFEVDPWKLVENKLPDNGYDFRLSESITSLGNEYLGMRGNFEETYSGDTHKGCYVGGLWYPDKTIVGWWKNGYPNYFGKVINAVNLLGLNVVIDNVELDLFKQTPSSYKRTLDLKQGILSREFVTNINNKEIKVETERFVSIDTKELVAIKYSITSNKDISLDLTSYINGDVINRDSNYKTKFWTHLDSLANDHSQLVVSKMIENNFDIQRFSYACYATNSYNLKTKDIVFDQSNLYAKTTYKFDLKANQTLIFYKLVTLVHSLNYSEDQLKENAIQINNQINQFDYEQLKEKHTSLWEKRWLTSDVKIIGSDLDQQAIRFNLFQLFCTYYGNDDRLNIGPKGFTGEKYGGATYWDTEGYCLPLYLKTSDPKISRNLLKYRHNHLTKAIENAKLLGFKGALYPMVTFNGVECHNEWEITFEEIHRNAAMVYAIYNYTNYTGDFDYIKEFGMDVMVEVSRFWADRVHYHSIKDKYFIHGVTGPNEYENNVNNNWLTNLMCQWVLSYTLEMLDKLNLDKSKWNLSTNETNKWVDIINKIYLPYDKDLDIFVQHDTFLDKDLKHKDLLSKDERPLNKNWSWDRILRSVYIKQADVLQGIYYLWDKFTKEQITKNFKFYEQFTVHESSLSPXVHSIIAARIDLMDKAYEFYNRTARLDLDNYNNDTDDGLHITSMTGSYLAIVEGFGGMLVXNDIPCFSPKLPKQWNGYEFNINFRDRVLKVKHHKTEVEIQLIKGQSLKINLFDKEYLLETNIKIEV
>LS483508.1|SRX63934.1|247563_248649_+|ABC-transporter-ATP-binding-protein
MKVELRNISKKYEGNSFYTLENIDLTINDNDFCVILGPSGCGKTTLLRIIAGLNSITKGDLLFDGVKVNNLLPKDRDIAMVFQSYALYPHYNVYKNLAFGLEMKKEKKEIINHRVRGAAKLLNIEKYLFKKPKELSGGQQQRVALGRAIVRKPKLFLMDEPLSNLDAKLRESMRTELVSIHRILGTTTIYVTHDQLEAMTMATKIVLMNNQVIQQVGKPEEFYNKPNNLFVAKFIGTPTMNVLEGKLENNYFISNINNYKVELSDEELELIKKEEVTKLYLGIRSEDAQLVKTTDKTANIVASVINTELLGMNKQVTCELTPGNNFVITTSKDNNIKIDDKVGIKIHKYHLFNGITENRIG
>LS483508.1|SRX63933.1|245021_247562_+|maltose-ABC-transporter-permease-protein
MKTEVKQNVDQKALVFSSLLKPVEKYDFSSFKKSNNWNIIKTKLLEDEQIKSTNKIKDYQLFIKSNYIVGNIVDIYKKFTTDSKLIEGLLLLLVANSFSTFNDKNNFNISNANKTMNQIIESKYVQKEIINEINVYEKQKSLKDFDHFDFKNLELYEFLNSWKKINAIIVTYFKKINLEKLGKILASEFLLTYETHKEAMDFVSLNIIQHEHLSEDYAFNKINDLLEQAFNELVNKNVENITIQETIILALKKSLTYQVDTHKKSWWEKLVENRKSKEKFRLYCSEEINERLAKELRLLTNPKVLDKSETKKEEQNEKFVHYNTLKINNKSYKIDAESLKFAKLIFKEKDLIDFQASLSETYFRSKHLNFNKYYNHLXIIKLSSLAYLYALKNKDNKINFNKAKELFELLILKTAYEISESFAKKIEKIIFNEEHLENEFFKKTKIDQLGRYKNWSKVVAINIAVYKELNLNTKIIQSATIYEILKNEIYVWESVKKSDSLLSKDLVNYNEISQYQNELIFIIEQELKKEKNNAYVKYVRFLTETFGKLYLSDKPPLSIYGKIGLAFIYLVLIAWALIIIVPITQVVLQAFNWYSANESTSTAGKLGTLGRFDFKRFAFSFANFSYLFERTFFGYWLLNSLVIATITMIFMVLITAMVGYAFSRFRFKGKRISLMTVMLIQMIPTVSSFIVFYVMFQLLQETVHITGQIMLILIYVGGGIPGNVFVLKGYLDNISTDIDDAAKIDGCSIWQVFTKIIFPLAKPMLSVIALWSFIGPFGDVLLPQLLLDNQRDWTMATGLNSLLNRSGEIAQGAFAAGSLLVAVPISTLFIMLQGNITGGLSGGVKG
>LS483508.1|SRX63932.1|242589_245007_+|ABC-transporter-permease
MNHIEFYKSLKTKEEVFNELKKVKYSDFEKEFEELDQTQKNIANSSYTFSNKELAKILLEFAKNNIHNNMYAKLKENFAMYXNKTADNKFVFDIKAIEQSFVNKDEDYIQDMFKIKARLQLSQIIYDARNQEIKNLKTKANSYYVAYLKFLNDFTYKYKKKFISITYKIAKRKVQELRLLFSTNDYTFHIKSHNKNATTFIEEKNAISQKIKQELNEIKNLDPITKAKRTSEIYQQGIEYNYDWEVASLNAKAKEKFLIKKQQIDSDFIDKINKAKQDYVEISKNKKQHDELTKKVIIQANEDFKTQLEFATTKSEKKNLKLEHKQNIKEIKSDNAVKKAKDNWKNLKHNYKVEKNKNRLEYTSEIENIKNNLPIEYPVWKQVLSIIFGWIPGVGPLINGQYKKAIVMFLTLPLFVIFGAYAFGIGNVGGNGLLGLIDFGADNPDGDGRFYLIEGIISLIIAFWICISIFSTWMDSKNNAKRMRIGSRASTFSQTRKFLKSHGIPYILSIPAIIGIMFIVLVPIISTILIAFTNYGKGNDPGRPGQIIKWVGFDNFKSIFGGEYFPSFLYVIGWTFTWVIATTISVIVVGSLFALLVNNERLKGKRIFRLIYILPWAVPAFIMIMVFAILLSSIEFNTFTYKWIGVSGWTSQQTQARIVLILLQTWLGHSYMFLLITGVLQGISKDLYDSSTIDGASKWKQLTRITLPLILTQVAPLLVGQFVFNFGNFGIIYLFGANPQALNAKGEPYPGQPGITDILISFVFKLSTHPDRYTYGIAASFIIVSSFIVVGTSANGFRKMKAFKN
>LS483508.1|SRX63942.1|257726_258347_+|chromate-transporter
MNKKEYTKPPTFWNIFLFILLITFVGFGGGNAIMPVIKRYAVDKYKWLDEDEFHQNVVLTNMLPGPAAIQTTAYIAFKSLSKFKAYLVVSLASMPHTFFAVGLIFAFNKIPTQYLVVVQLGVLVAITGALLGFGYNYFKKGKKVMKLSLWLVLFFTTLLFSLFVPTPYNVPVLVMILVIAIYSTIFIIRSKKSKKIESNEIKKGMK
>LS483508.1|SRX63943.1|258346_258964_+|chromate-transporter
MLSFIAFLVTLVLLVFVSLSVFGGGQVFMPIFVWLWKSLNSWFKIEISEEFINTVFAVSNSTPGILSPKFAAITGYMIAQGQWWGFVAMIFTYLAFVLPAIFMMMIAIKYSQKFHQSTFFKKLIDIMNPVVAGIIIALAIEIFISCMFPYFVFNESVSEYWKFIDPNKPSYSMKFFTGWRLIALYCYVPIGIIMKEDEYEKIKRI
>LS483508.1|SRX63944.1|258941_259901_+|CAAX-protease
MKRSKEFKTFEEQIEILKSRGLIIKDEQKAIEILKQENYYNIVNGYKDLFLKNTLNDKEDVFIENTTFDELYSLFLFDRELRSILLKYILIFERDFKTTIAYNFSKKYNKNNIIDSYLYPENYRDNYVEVLNFISSINNIIVSKSEKSNYIRHYIENYGHIPLWVAVNIMSFGNMSFMFKILKDEDRNQIILFYVMRFLSQNNKKVIPTKFRSETFLSGLKILNLARNICAHEERMYNAQFDRVKTKEISRLLEYSDYDGSRLISVFLFLKVVLIEKSFTLLKKDILEIFTKFQNRFKTIEFGDILKEMGIKLENFYQL
>LS483508.1|SRX63945.1|260264_263081_-|ABC-transporter-permease
MKKLLKRSYFAFVLLFIYAPILAMVVFSFNNGDTTIKWTHASFSWYESFFKNSPFIKSIITSLFVAVISTIVSLVIGTLAAIGLSRVSRVTRNKWVSVANIPLINADVITAVSLMIVFLIMGLKFGLLTLIMAHISFNVPYVLVTIMPRLKKIDPSLIDASYDLGAKNHQVMFKVILPILKPAIITAAAIAFAMSFDDFIISYFTGGMQTNVSTFIYTAKKTRPFIFVFGTCLVLVIALSIITWNAINLIKQSRLETKQKLINNNYKLKTISKLNKQLDELNQILKTKTIIKKSHNLSLWIKYFILKTKLYFYKLKSLDKKISKLQWKQYKLKSKIQKEERYYSRLKKSEKKLKQLIKLVVEKLKDLKNIKNNKISDLTDQLNELINRIYVPVLITKDIDLKIQNTTDIESLNNLNHKREVIIDKFTKLYNRKIDKTTLLIQKVNQKTDKLKTRLLPSSNENASHFKSFISRSWKAILITFIGIGAFSGLTAAYVLNNIYDLVVANWGEYIDPSLIGEFEQQASQKHNRRIRINYXIYNSNEILYNKLHTVDYDIMIPSDYMVQRLASENYLQKIDYSKLNIWGEFNEKNFNKDIKSKDFEKLQVNKSLLELMAKSPIHLEDETKEVITKNPNGTYLSTNSILDYSIPYLWGDLVIVVNPTQENIKFLEDNQIKFKNQKDDENNNENKVEIDNSSLSWDILWKAAAAGKKVALNNDPKNVFMLGSQKLYQKVNLTKKSEIDEVGKELSQLLSNSGVSLHSDDLISLVVREKFDFAVMYNGDAAYANYVHNEGDDDYEKAGNSINFIYGRPNKKNKKNNRHESTNVFSDNIVLYKDAQNLDLAYEFINFLYENSTKISDYVGVTSPLDSAIEEMTAAPKEGNKEDEGGTYQDFKNIYDPITHQNNGSKYETNNEQLSFTYNGKIDEYLVNSFNNLLANK
>LS483508.1|SRX63946.1|263065_264058_-|spermidine/putrescine-ABC-transporter-permease
METKNLKDNNVIENKIINQDELEHVIETIEKQKKRESARLKVKDINHYLSKTKLFHFTKDKVWPILAPFILVMVILVILPLVSILIYAFIQPADGITLFKISFEKFVKLFTSNGILYSLFLSILYAIVAGMLCVLIGYPIALMMAQMKSKILARNMWVIVTMPXWISMLLKVLGLQTLFYLLADFAIGTPIAIIIGMTYMFLPFAIAPIYDSLESRQTDLEEAALDLGASKXRTFWSITLRSSMPGVLTAFSLVLVQAATSLIVVHYMGGGRIYLVSAAIESYFFQGNDFGYGAAVSVVLAILVFGLMLVMKLISNKFEMKGNKRKWKNS
>LS483508.1|SRX63947.1|264057_265113_-|spermidine/putrescine-import-ATP-binding-protein-PotA
MENNILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKTTILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFNTIFQSYALFPHLNVFDNVAFGLTIKKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPMAALDVKLRKTMQEELKRLQQDIGITFIMVSHXQEEALSMSDRIVVMNQGTIQQIGTPEEIYNEPENAWVANFIGSSNIITDGIFLEDNKIKFDGKVFECIDTNFGENESSIDIIIRPEDIIIKNPNNGFFNAKVIKTTFKGIHWEVVVETSKKRQWIIHTINEYDIDQQVSIKWKPANVHVMWKEVDN
>LS483508.1|SRX63948.1|265176_265293_-|hypothetical-protein
MLKIIDQPIKFLTSWLEIMFVLSQINEIVLETESLSLK
>LS483508.1|SRX63949.1|265486_265846_-|~50S-ribosomal-protein-L20
MARVKYGKVTRARRKRWIKLAKGYFGTKKSSYKKAHEQVIRSMAYAFIGRKERKRDFRSLWIVRINAAVRPEGLSYSTFMHGLKLANININRKMLSELAINNSEEFKQIVQQAKKALNK
>LS483508.1|SRX63950.1|265864_266056_-|~50S-ribosomal-protein-L35
MPKMKTKKSLAKRVTVKSNGTLKRAKAYRSHRATGKTTKQKRQLSKATIISKVDMKNLKGLLQ
>LS483508.1|SRX63951.1|266081_266627_-|translation-initiation-factor-IF-3
MENRNRNSRPIKNQDPVNEFIRAHQVLVIDEDKQNLGVMSKRQALEIARSKNLDLYQVGVQPDGTVITRIVNFGKLKYEQQKKSKEAKKHQTKIENKEIRITVNIGKHDLETKARKAKEFLEEGSRVKVSLKFRGREVVYLDLGQQTLNNFFELVSDVGKMEKEAKLNGKFLDMYIVPKKN

Crispr_ID: LS483508_5

• CRISPR_ID: LS483508_5
• CRISPR_location: 576287-576467
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of LS483508_5

Consensus_repeat	Method
TCATATCAGTAACATTTGAAGTATCTCA	CRISPRCasFinder

spacers of LS483508_5

>5.1|576315|47|LS483508|CRISPRCasFinder
TTTTGAAATATCCTGATTAAACTCAGTTGCTCCTGCAAACATTTCAC
>5.2|576390|50|LS483508|CRISPRCasFinder
ATCTAATATGTCTGAACTATTAAATTCATTACGTCCATAAAATAGACTAT

CRISPR arrays and Neighbor proteins around LS483508_5

CRISPR arrays

The CRISPR arrays of LS483508_5

>merge|LS483508|5|576287-576467|CRISPRCasFinder
TCATATCTTTTACTTTAAAAACATTTCATTTTGAAATATCCTGATTAAACTCAGTTGCTCCTGCAAACATTTCACTCATATCAGTAACATTTGAAGTATCTCAATCTAATATGTCTGAACTATTAAATTCATTACGTCCATAAAATAGACTATTCATATCAGTAACATTTGAAGTATCTCA

>LS483508|5|5|576287-576467|CRISPRCasFinder
TCATATCTTTTACTTTAAAAACATTTCA	TTTTGAAATATCCTGATTAAACTCAGTTGCTCCTGCAAACATTTCAC
TCATATCAGTAACATTTGAAGTATCTCA	ATCTAATATGTCTGAACTATTAAATTCATTACGTCCATAAAATAGACTAT
TCATATCAGTAACATTTGAAGTATCTCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
LS483508.1|SRX64253.1|582937_583522_-|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX64236.1|567865_568360_-|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX64242.1|572705_573050_-|glycine-cleavage-system-H-protein	unknown	unknown	gnl|CDD|133457
LS483508.1|SRX64248.1|578254_578974_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224054
LS483508.1|SRX64237.1|568369_569101_-|IS1296-transposase-protein-B	unknown	unknown	gnl|CDD|222853
LS483508.1|SRX64251.1|580865_582023_-|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl|CDD|238434
LS483508.1|SRX64244.1|574032_574827_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
LS483508.1|SRX64249.1|578973_579729_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|366444
LS483508.1|SRX64243.1|573236_574031_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
LS483508.1|SRX64238.1|569238_569781_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|379233
LS483508.1|SRX64241.1|572038_572446_-|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX64239.1|569845_571024_-|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl|CDD|240086
LS483508.1|SRX64254.1|583526_584312_-|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX64250.1|579857_580814_-|L-lactate-dehydrogenase	unknown	unknown	gnl|CDD|133427
LS483508.1|SRX64245.1|574820_575618_+|lipase-esterase	unknown	unknown	gnl|CDD|223669
LS483508.1|SRX64255.1|584751_585159_-|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX64252.1|582191_582926_+|hypothetical-protein	unknown	unknown	unknown
LS483508.1|SRX64240.1|571023_572061_-|lipoate--protein-ligase-A	unknown	unknown	gnl|CDD|223173
LS483508.1|SRX64256.1|585310_587311_+|hypothetical-protein	unknown	unknown	gnl|CDD|372315
LS483508.1|SRX64247.1|576707_578108_+|putative-lipoprotein	unknown	unknown	gnl|CDD|223626

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
LS483508.1|SRX64242.1|572705_573050_-|glycine-cleavage-system-H-protein	gnl|CDD|133457	cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.	1.98356e-22
LS483508.1|SRX64240.1|571023_572061_-|lipoate--protein-ligase-A	gnl|CDD|223173	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism].	1.94253e-62
LS483508.1|SRX64237.1|568369_569101_-|IS1296-transposase-protein-B	gnl|CDD|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.3533e-42
LS483508.1|SRX64251.1|580865_582023_-|N-acetylglucosamine-6-phosphate-deacetylase	gnl|CDD|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	2.00813e-130
LS483508.1|SRX64244.1|574032_574827_+|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.40979e-22
LS483508.1|SRX64243.1|573236_574031_+|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.84374e-24
LS483508.1|SRX64238.1|569238_569781_-|helix-turn-helix-domain-containing-protein	gnl|CDD|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	3.55919e-09
LS483508.1|SRX64249.1|578973_579729_+|ABC-transporter-permease	gnl|CDD|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	0.000206026
LS483508.1|SRX64239.1|569845_571024_-|NADH-dependent-flavin-oxidoreductase	gnl|CDD|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	2.40654e-175
LS483508.1|SRX64250.1|579857_580814_-|L-lactate-dehydrogenase	gnl|CDD|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	1.97499e-179
LS483508.1|SRX64245.1|574820_575618_+|lipase-esterase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.74423e-23
LS483508.1|SRX64248.1|578254_578974_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.21758e-59
LS483508.1|SRX64256.1|585310_587311_+|hypothetical-protein	gnl|CDD|372315	pfam12785, VESA1_N, Variant erythrocyte surface antigen-1. This family represents the N-terminal of the variant erythrocyte surface antigen 1, versions a and b, of Babesia. Babesia bovis is a tick-borne, intra-erythrocytic, protozoal parasite of cattle that shares many lifestyle parallels with the most virulent of the human malarial parasites, Plasmodium falciparum. Babesia uses antigenic variation to establish consistent infections of long duration. The two variants of VESA1, a and b, are expressed from different but closely related genes, and variation is achieved through the involvement of a segmental gene conversion mechanism and low-frequency epigenetic in situ switching of transcriptional activity from the VESA1 gene-pair to a possible other gene pair.	0.00856972
LS483508.1|SRX64247.1|576707_578108_+|putative-lipoprotein	gnl|CDD|223626	COG0552, FtsY, Signal recognition particle GTPase [Intracellular trafficking and secretion].	0.00233579

Protein sequences

>LS483508.1|SRX64245.1|574820_575618_+|lipase-esterase
MLDMKKIIYDYDYIFKDNNNDTENIIFCHGFNASINVFNIFKNYWTKSNYYALQFPGNNNVKPIKDHEISVLQFAKLVVEFVKNNNLKNVTLIGHSMGGGTISLAYQLAPELFKKLVYVCPMNKASEDVNNNFLHDYFPKTFEEFTTDFLGSLYYDPSFLTRDPKWMRLAKWHFSGNDYNTKELTDLGKTLVSKELHEQIYQAIKTIKIPTLLILGEKDGVVNREPCLKYYQDEVKNVITTWIPKTGHMVFEEDIKILEPFLLNK
>LS483508.1|SRX64244.1|574032_574827_+|alpha/beta-hydrolase
MKKLIYDYDYVFKNNNNSDLNIIYVHGFNSSYKAFEIFEKYWTKTNYYSIQFPGSQLVKPAKDHKVTVEGFAQLLIDFIEQNQIKNVVAVGKSMXGGTLAIAYKMRPDLFKKLIFITPMNKTQLPLYPRYKINYFPKTFDEYVNNTLTSLYYDPSFLTSNKEWMEKAKQNFNPEMYDNDLIIKLGTPKAKTFELIEKGLDSITIPTLLILGEKDGVILRDECLDYFKKHVKNVESHWIKKTGHRVFEENFDEFIKIVENFLKIC
>LS483508.1|SRX64243.1|573236_574031_+|alpha/beta-hydrolase
MNLIYDYNYVFKNNNNDNESIIFVHGYNSSPRTFEIFEKYWTRSNYYALQFPGSNLVKAVKDHKVTVEGFAQLLIDFIEQNQIKNVVAIGHSMGGGVISIAYKMRPDLFKKLIFITPMNKPQRALYEQYKIDYFPKTFDEYINNTLSSLYYDPSILTSNQEWMKQAKQEFDPYVYNNDVIVELGEPKDRTFELIEQGLDAIKIPSLLILGEKDGVILRDECLDYFKQHVKGVEMHWMKKTGHMVFQENFEEFIKIVENFLNKTN
>LS483508.1|SRX64242.1|572705_573050_-|glycine-cleavage-system-H-protein
MKKVIKFLVIEKIDDKNEYYLRMTSEMQDDIGTVSYLQFKNTDKKHLKEDDIFLALEASKAILNLKMPLDATVVKWNQKALENPKLISSHDDNENWIMVLSDIDQNKFMSLEDF
>LS483508.1|SRX64241.1|572038_572446_-|hypothetical-protein
MANNQKNLKVELEQIPVCKKCNSYLKVHQRFWCQVFIKDDEFVQTQNNYQKFINKNKDKKMLFWEIGINFNNQLTVKKPFWQMVEQFNKATYLAMNKKIYRIPLEIRSKTITYTNDLNLAIKNLEEVKNGTNRTN
>LS483508.1|SRX64240.1|571023_572061_-|lipoate--protein-ligase-A
MVLIEPIRNGKYIKDGAYWLAIQIWAASNLKIDDTIVFPSIADPHIQMGYFQNPEVEVNFKYLKEKNLEIVRRATGGGTIYIDSNSVNICYLIPYKKGTEILGNYAKFYEPTIKILKELGAKNITQSGKNDLTIDGKKVSGXAMMLLDDVIYGGNSLLYNVDYDAMSQVLNPNRKKIEAKGVKSVSQRVAALSQYLDEPYRNLDIFEFKDLMIKKIFNVDDLKDVNRYIMTDKDWEQVDELIKTRYKNWEWTYGLSPRYEYNRDARLAIGTINFSLAIENQRIEKIKISGDFFAKKDLLELEKALIGTKMTHEDLLKAFNDADLQSYFFNEIKPEEVVKIILDEE
>LS483508.1|SRX64239.1|569845_571024_-|NADH-dependent-flavin-oxidoreductase
MNKYQKLFEPFEINGFKLENRFVLSPMTLSLATLDGKITTQEADYVKRRAHSAPLQITGGVYFDEFGQLFEYGISAKSDDDIPSLTSLYQAMKTDSNCVILQLAHAGKFSKTSLKKYGYLYGPSYEKNHTPIEHEVLELSKDRIKQIIKDYKDATLRVIKAGFNGVEISMAQRLLMQTFFSQIINKRTDEYSATTFENRSRFCLEVVKAIREVIDKHAPKNFIFGFRATPEETYGDILGYTIEDFIQLVDKIIEIGKISYLAIASWGHDIYLNKVRSNTKYKNQLVNKVIYDVYKNKLPIISSGGINTPDKCLEALKYSDLVGLSSVFVADPEFVLKIKNDQIDQINLSVKHDQLKDLKIPESSFQDVVNMFSFCETIPSETIKTFENNSKE
>LS483508.1|SRX64238.1|569238_569781_-|helix-turn-helix-domain-containing-protein
MSKLNLEKKLKIVKEAKKLNIKKSTYLANKYDISVDTVESLVNRFEAFGIEGLINKDKKPHYSAKLXLKIVLYKLETNHSYDEVAKKFNIIYSSTIAGWVKKYREYGFLGLNNNIGRPKKIMKNPNKKPAKIKKSQVKINNEQQIKELKEQVEYYKLEAEFWKKFHTLLTKEKSTRKKQK
>LS483508.1|SRX64237.1|568369_569101_-|IS1296-transposase-protein-B
MIVDIFNKSFETYGYRRLKIALKSKGHIVNHKKILRLTKELGVQCIKFRTKNRRYSSYKGTVGKIADNILKRNFHSLQANKLWCTDVTEFKVNGQKLYLSPIIDLYNDEIISYSIQTNPNLNLTNSMLDKALKKVKNTNGLLIHSDQGFHYQHISWAKKLEENNITQSMSRKGNCLDNAIIENFFGLLKQEIYYGEKYNSVEELTKRIHKYIYWYNNIRIKEKLKGLSPVQFRKQSCYNIEKF
>LS483508.1|SRX64236.1|567865_568360_-|hypothetical-protein
MVAGGSKVEVFFFYYLFFFFLINITTELIAKIANIETALTATKAVLLFTFLVCGLLFGFTWLSALFSGALGWSGFDSGFLLSVGWIGFVGVIGLVESVGFGSLGLVGSLGFTGWSGWFGFIGSTGLFGVELCGVITGYKNQSSSLLNVDRSAALFDLLNIYHSF
>LS483508.1|SRX64247.1|576707_578108_+|putative-lipoprotein
MKKLLTILGSLTLIASGGALVVACNGTQPNNNEKKPDPVNPSEKDPSKDPKDGNKPGDKDGKTPGDNKEPKTPEKKPVKKPIQNAAMASANDTQLLFDETINXATRSWNKTYNEKIEKAEMDKVDAQIAYENAIDDATRLTGELLDTWHRMTVYENDQKWIKAEKERIDEIIYREDIADAEEREAAREVDKVLYYENAIDSFIDSAGRFLDDEYRIQLERHNHKFDEISRKANEDWEDFIALDALDASANHTKELFDIPTNKANLDWAEKYDKRFKFYRELEAKLAKEFKNTASSTTEEYFNVLDTSKENEAWAKNKAEKERLYKERLYKERLYKEFTTSSSNATEEYFKLLDEIHNREKKEEEWIKSEIEKIEKILKDEDFRDGIAKTIKDLFDAIEENKIAANKRELKEKLEEISDSVTDNSRAANGISNWIGVDKETRDYISSISDSILNNATAVNGNGSSED
>LS483508.1|SRX64248.1|578254_578974_+|ABC-transporter-ATP-binding-protein
MSLIEVKNISKKYNKKTVLGPINLKINKGESVAIFGANGAGKTTLCEIIANTKSQSSGEVLYDFKKEEIAFKIGINFQTQTYPNFINVKELIDFYKTLYKNIINKTYFDEMINKFKLKELFKQKISSLSGGQRQRVNLFVSLFNKPEIYIGDEITTGLDVKAQLEIIDLLKKEIKDKEMTLILVSHNLDEIKQLCDRMVFLDKGKIIDDAPIEKILNRYGTLLEYYLSKTNDLNKGEMQ
>LS483508.1|SRX64249.1|578973_579729_+|ABC-transporter-permease
MLQQFKAMYNLLFNYWKKSFHNIFFSFVFPCMFLAILSKVPSLNINDLTPGIIASACPVVGIISLSISFSDLKQTIIYKRIAVLPLKPWIFIISIISFFTILTWLSAIWIFIFSLIFWHSQINLVNIHAGYIILGVFFLSIICSSIGVIIGSLAKDYMIANAFSMLFYLPPAFLSGMYLPIKVIIGSNVLKIISLFLPYTYPVTIINYGWNKTKSSFIFNSELWIFIVISLLLVIGFITIAILVYKLKKKK
>LS483508.1|SRX64250.1|579857_580814_-|L-lactate-dehydrogenase
MKKTANKVVLIGAGAVGTSFLYAAINQGIAEHYVLIDAFPQPAEGNALDLSDTLAVIPHSFSSIKAGTYEDCKDADVVVITAGRPQKPGXTRLEMVAGNAEIMKNIATEVKKSGFDGITVIASNPVDVITHVYQKVTGFDPHKVIGSGTTLDSARLRRLVGQKLNVKPESVQAYVAGEHGDSSVAIWSQANIMGRPILDYVKCGCLTLEDLDQIQKDTVDMAYKIINLKRATFYGIGACLTKIVNXVLRDEKSTLMVGAQLNGEYKNKGLYTGVPAIIGSNGWERIIEWDLTKEEQEKFDKSCETLHKTIDSVKHLFE
>LS483508.1|SRX64251.1|580865_582023_-|N-acetylglucosamine-6-phosphate-deacetylase
MILKNAKIVLEDKIINNGYLIIKDKKIVEIGSDYKKKNGIDLNNQWLLPGFIDCHVHGGYGVDFETGNKNRFKHFADNIIKEGVTRYIQTSVTNSVKKNNQIYKEFGEFIKLNNGKAKCLGAHLEGPFISKFKKGAHQENLLLNPDIKLTKKWNKLSNNSLKIVTYASELDDGSYLQFLINNQIIPSIGHSNLKXNQFEQVYLLGVRHITHLFNAMSGVDQHNPGLVVASFNHKDVLCEIISDGIHLDKEILKMIYNFKTADNLCIITDAMNAKGLDDGIYKLGDLEVYKKGIEIRLINNNALAGAGATYDHNIRVIKQVCDVKMTDLIKMTSINIAKQLNIFDTVGSIEVNKLADLVVLDDDLYVNKVLVEGKIVFKNSKNKKI
>LS483508.1|SRX64252.1|582191_582926_+|hypothetical-protein
MLLSGITLINAFFNGILKEQWYFESNNLYQPTRLINYDILLSFFSVQVSIITTIYLLIVVINYKNPKSNINTQRTRNIVLNWNLLDFMIFWIGIIGFKNTIAGQLPYLTKTQIFSTVITHFVVPLLLLFIYLFESGNNKYEIKKFYKNIKELFWVYSYPFFYTLFVLMRAQIYLKDKNIDNFIYPYEFLDFTTPYIGNSKIGYLILIWIIFVIWLTLNHLIILLINNLIFKIKNKKKEKIVTLN
>LS483508.1|SRX64253.1|582937_583522_-|hypothetical-protein
MENKINHKTYKSLKYLLTISSVILAICLLLVFVQFTKAKPLFISLTPFISLLVILLILSFTCLLVYIIYRMKILKTSNYKYIKKEIIYLYTSFSLYIFSFILTVIYLIIALLIKNSESIRIMFYVVISIFFICIILSSIFETLSRLKEQILLYKQQYQSQQQLKLNKETDNKKQINKEVTNNNNNQSKNPFIED
>LS483508.1|SRX64254.1|583526_584312_-|hypothetical-protein
MKLNLYKPKNIITTNSNDQFFKDFDQLDAYWKEKSKFNFGKSSAIQIKQNLENIWNAIPKPKTLNKDYFDLDKLKTNTVHLFNTLQKVTHNNLDNIFINLILTNDDRFKVNNNLLDPKIKGITSTSFSKNTLSSSYSYVLIKADSFNKAENQEQYDRSWFASNNQFQTLNHEFGHVLDSFLALNSYQTQLNKNTFSSLSFWADHQQANLYHGNIVISKNRNWSLYSIFIIGVIGINLVLLILYIGYDKIFKPKNKKTIVIK
>LS483508.1|SRX64255.1|584751_585159_-|hypothetical-protein
MKKVFSYFLIILIFFTSLFFINNKNQNQVNLTYNTQFNDNDNNETNKNSIKEFLWGGKALRYFLYKNSTAQTNKSFNQFTDNLLANFERVFQKRTKRNFYKQQYITELQSEEFKHAILSSILVFNFTRRIFCWII
>LS483508.1|SRX64256.1|585310_587311_+|hypothetical-protein
MAKKEVKQYLTDVLINKIDYYVSIKKFDFDTIKEMLAIDLIDYEPYMIQTIDKYIKYIIWLDQKNKNKSEAFLKFLDKYQQDLDDNSSLVENKNSLETNSDNLNDYQQRKKHQTWLDQYFRKQKAKYHVYEESPLDSQTKINNFEEFLQDQTNEEQVEEILDKDLDLVNLITSDNTFYQNSTINLDDLKTNSDESLKDDLDDILLANQKLDELEEIELDPEEFGTATINIDKWEAQNGSKNNQEIKQEVEPTLDEQDLTKDSWIEEKDLTSDLIKKIDITKDSWIENDQQINTSLDQKLISEPIVHTPEELVNNNQVEELSKEHWIEENAHLNEEDFNKEHELSTEHWVEEKQEDKCECDKACDQNLEECFDETCDQKTCCEAENTCQKEQDCECEKQDKCSDDSCCEENKCSENNSCENKNCDENNSCSIEECKTDKCCIENKCCVDNSNCQEECNKKDDCECSVTNCDCQSSCDQKQEELTEQLDHNVSNQTKINKLWINQPETDLNKTNDQEPLIKTNQNINNKIWTISPETDLKEYSNDKDFLDSKTDQEIINKTNQTNDLVDQETNNLDATLSQTDQTSNNEVITNQQVALNPNKNNETPKVIELNKPVKLYQQVKWNDKTYYVVGIKIKKDVFGHEIPVLRLESQDKPYEITEVKFIKKY

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
LS483508_2	2.1|228572|33|LS483508|CRISPRCasFinder	228572-228604	33	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	13914-13946	8	0.758
LS483508_2	2.1|228572|33|LS483508|CRISPRCasFinder	228572-228604	33	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	24630-24662	8	0.758
LS483508_2	2.1|228572|33|LS483508|CRISPRCasFinder	228572-228604	33	MN812211	Flavobacterium phage vB_FspS_laban6-1, complete genome	22169-22201	9	0.727
LS483508_2	2.1|228572|33|LS483508|CRISPRCasFinder	228572-228604	33	CP019152	Acinetobacter lwoffii strain ZS207 plasmid pZS-2, complete sequence	8788-8820	9	0.727
LS483508_2	2.1|228572|33|LS483508|CRISPRCasFinder	228572-228604	33	MN693975	Marine virus AFVG_250M1117, complete genome	8793-8825	9	0.727

1. spacer 2.1|228572|33|LS483508|CRISPRCasFinder matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 8, identity: 0.758

gttcattataattttatcataaaaatacctacg	CRISPR spacer
atctgctataatttcatcataaaaataccaacc	Protospacer
.*....********.************** ** 

2. spacer 2.1|228572|33|LS483508|CRISPRCasFinder matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 8, identity: 0.758

gttcattataattttatcataaaaatacctacg	CRISPR spacer
atctgctataatttcatcataaaaataccaacc	Protospacer
.*....********.************** ** 

3. spacer 2.1|228572|33|LS483508|CRISPRCasFinder matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 9, identity: 0.727

gttcattataattttatcataaaaatacctacg	CRISPR spacer
ttttattataattttataataaaaatcaacaat	Protospacer
 **.************* ********   .*  

4. spacer 2.1|228572|33|LS483508|CRISPRCasFinder matches to CP019152 (Acinetobacter lwoffii strain ZS207 plasmid pZS-2, complete sequence) position: , mismatch: 9, identity: 0.727

gttcattataattttatcataaaaatacctacg	CRISPR spacer
gagcattataattttaacataaatatatgaatt	Protospacer
*  ************* ****** ***.  *. 

5. spacer 2.1|228572|33|LS483508|CRISPRCasFinder matches to MN693975 (Marine virus AFVG_250M1117, complete genome) position: , mismatch: 9, identity: 0.727

gttcattataattttatcataaa-----aatacctacg	CRISPR spacer
tttcattataatttgatcatcaaaaagtaatat-----	Protospacer
 ************* ***** **     ****.     

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	895613 : 909523	14	Lactococcus_phage(25.0%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>LS483508|895613:909523|DBSCAN-SWA
ACTAATCATCAAATTCACCTTTAATTAAAATTGTTTGTTTACGATCTGGTCCTACTGAAAATCCTAGAAATGGAACTTTTACAATTTCTTCAATTCTTTTAATGTATTTTTGAGCATTAATTGGTAGTTCTTCAAAAGAAGTTACTTTAGTAATATCTTGATTTCAACCATCTAATTCTTCATAAAGTGGTTCACATTTTTTTAGTTCATAATCACTTGCTGGAAATCAATCAATAATTTTTCCATCTAATTTATAATGTGTACAAATTTTAATTTTTGCTTCTGTATCTAAAACATCAAATAAAGTTAAAAATAATTGGTCAATTCCACCAACTCTAATTGCATATTTTAAAGCAACTAAATCTAATCATCCAATTCTTCTTGGTTTTCCAGTGTTTGATCCATATTCTCTTCCACGTTCTCTTAGTTTATGAGCTAGTTCTGTTTTAATTTCACTAACCATAGCTCCAGACCCAACTCTAGTATTATAAGCTTTAACAATTCCTAAAACTTTATTAATTTGTTTATTATGAATTCCAGTTCCAATTGAAGCATTATTAGCTGAACAATTTGAAGAAGTTACAAATGGATAAGTCCCATGATCTATATCTAATAAAACTCCTTGAGCTCCTTCAAATAAAACAAATTTATTTTCATTAATTAAATTAGAAACTTCATATCCACTATCAATAATATTATTTTTAATAAACTGATAATTTGTCATTAATTCATTATAAATAACATCAAAATCTAAAGGTTCATGATTATAAACTTTAGTAATGATTTGATTATGATAATCTAAGTTTTCTTTTAATATATCTTTAAAATTAGGGTTTTGAAAATCACAAATTCTAATTCCATATCTAGCTGCTTTATCAGCATAAGTAGGACCGATTCCTCTTTTTGTTGTACCTATTTTATTTTCTTTTCTATTTTCTTCTTGTAATTGATCTATTAAAGTATGTCAATCAAAAATTAAATGTGCTCTATCTGAAATAAAAACATTATCAGTACTAATATTTGATTCATTTAATCTTTTAATTTCACTAACTAAACTTTTTAAATTAATTACTGTTCCATTACCAATAATGTTTTTTACTTTAGGATTAAATACTCCTGATGGAATAATTGTTACTTTATGACGTTTATTATTAAATTCAATCATATGCCCAGCATTATCTCCACCAGCAAATCTTACAACAACATCAGCTTTTTGACTAAAATAATCTGTTATTTTTCCTTTACCTTCATCTCCTCATTGGCTACCTACAATAACTAATGACTTATAGTTGTTTTTCATAAATTCTCCTTAAGAACGTGTTTTAAAAATATCTTCTAAAAAAGATATCGAAAAATTCATTATAATATTATTTAACTTCTATTCCAATAAAATTAGTAAAAATTTAAAAAATTAAATTTAATAATAAAATCATTAAAAATAGATTAATAATTTAGCAAAAGAATTATAAATTACTTTTTGTTTTTCAATAAAAAACCAAATACTTAAATTTAGTATTTGGCTAAATGTATGTTATTAAATAAATAAAAGTTTTAAATTTTAATGCATCACATTCATAATTTTCACTATCTTCTAAAACATCTTGACGGATTCTTACATAATAAATTGATGAACAACCTTGTTTAAACTTGTGATTATTTCGATAATTCTTCAATTATTCTATTTCTTACATCATCTATTTTTAAAAGTTCAGTGACAAAAAAGTTTAAATTCTTCTCACTATCTCTTTGTCTCTCTTTTTGAATTTCTTGCTTACTTATATTCAATAGATCACAAAACTCTTCACCTGTCATAATATGTTTGATAGGAACTTTACTTTTTAAACCTAAAAAAATTTCTTCTTTACTATCATTATTGAAACTGCATATCCAAATTTTTGTTATGAAACTTATTGATTTAGATATTTCATTTTGAAAATTTATTAACTGTTGATACTCTCCTGCGACCTTTTTTGTATCAAAAACTCATCCATCTTTAAGTTCTATTATATTTAATGTCTCACTGGATTTTTGGATTATTAAAAAGTCTGGTTCCATTGAATTTTTAATTGATGAATTTTTAATAACTTTTTTAGGAACTATAATAACATCTCAACTATCATCAAATTCCTTTTGTAAAATGGAATTTAACTCCTTTGCATCCTTCACCACTTTTTTGCATTTATTTAAGATGATTTTCTCTAATTCGTTACCGTTTGAGATAGATGTAGAATGCACCATACTTATTAAGGAACCTAATTTCTTATTTCCAAGAACACGTTCATNAGAACCACTTGTTATTCTTTCCTTTTTTCTTTCTTCTATTAATGCCATTATTGCTTTTCCTTTATATCGGTTCCTATAAATAATCTACCTGTTTCAATACAGCTTGTTAAAACTGAAAAACTACCAGCAGCAACATCCATAATAACATCACCAGGATTTGAGACTGCTTGAATTAATATTTTTTGTAACTCTATAGGTTTTTGATGAGGATGAACTTTGCCTACTATTTTTTCTTTTCAAACATCTCTTATATTTCTTAATCTTCAGACATTTTTAGCTCTAATTGGTTTTTTTTGTAAAACAATTAAATATTCGCATTGGCGTCTTGTACGATAGCCCATACCCATTTTTTCTTTATCTCACACAATCATATCAACAATAGATAATGATGTATCTTTTATTCAATCCGAAATTCCTTGACATAAATGAAATTTATCTACTCATAAAAATAAATGACCTGTTGGGATAAGAACCCTATCCATTTCCCTTATAAAATGAACTATTTTTTCTTCAGTCATTTGCTGTAATTCTGATCTTTTTATTTGTCGTTTACCTTCATTGCCATATGATAATTTATCTAGAACACCTCTATACTGAGGGTCAAAAAAAACAACAGGAATGGCATTGTCTTTTATATTGTTTAATATAACAAGACCATCTAAACCATATTTATGGTTAAATTCCATACGCTCATTTTTAAAAATATCTTTTCCTAATTCTGAGATTTTAGTCCTTTTGTTACTAAACACAGATGGTGATAATTTCATTTTTACACCCCCATTTTTAAAAAACATATTATACAACTATAGTATATTTTATTTAAGTAATTATGTTTTAGAAATTTTAGAAATAAATTTTTTTGGTAAATATTTCTTATTTTTATCTATTTTCGAATTATTCGAAAAACTATTAAATAAATTAACTTTTGATACATTTCAAGATGAAATATCTTGATTAAAATTTCTAGCATTATGAAACATTCAACTCATTTCCTTAATATTAGAAGTGTTTCAATATGAAATGTTCTGATTAAATCCTATTGCATTCTTAAACATAGATCTTGTATTAATTACGTTTTTGGTATTTCAAGATGAAATATCTTGATTAAATTTTAAAACACCGTAAAACATATATTCCATATGCTTAACACTGCTTACATCTCATGTTGAAATATCGCCATTAAACGAGCGTGCTTCGTAAAACATAGATCTCATATTTTGTACTTTAGATGTATTTCACTTATTTAAGTCTATGTTAAAAAGATAAGCAGATCTAAACATAGCTTCCATATTTAAAACATTTGATGTATCTCACTTATTTAGATTTTGATTGAAATTTTCAGCTCCATCAAATAAAAGTTGCATATCAACAACATTACTAGTGTTTCAGTTAGATATATCTTGATCAAAACTTTTAGCATCTTTAAACATTCTATTTAATGATGTAACATTCTTAAGATTTCATTTATCAAGATTACAAATTATTTCATTTTCATTATTCCAAAAAGCTAATGTTAAATTAGTAATGAATTCAGGTAGTTTCTTAGGAACTTTATTAACGGTTGATGGAAAAGGATGTATTTGATATTCATTATTTTTGTTTAAGAAATAACCTATTTCTTTACAAATAGTTTTTTCTTTATTATATTTTGGTTTCTTATTTTTCTTATACATAATTCACCTCATATTAGTATTAGAAAAATAATTAAAAATATTACATTTTTTCAAAAAAACCTTGCATTTTTTAAAAAAGCAAGGTAAATTGTTAAATTTAAGCTTTTAAATTTTACATGCATCACATTCATAGTTTTCACTATTTTCTAAAACATCTTGACGGATTCTTACATAATAAATTGAAGAACAACCTTGTTTAAAAGCATTAACATATGCTCTGTTTAAATCTCTAGTTGTTGCTTTATCAGTCATAAATAAAGTTAGTGAAATTGCTTGATCAACATGCTGTTGAGCTGCTGCAACAATATTAATAATTGGATCTGCTCCTAATTCATAAGCACCCATTGCATAATATCCCATATTATCAAAATTAATTTGATATGCTGGAACATAAACTCTTCCTAATTTTCCTTCTTTTCTAACTTCAACAGTTGAAACTACTGGTTGTAGTGAAGGAGTACATGATGATAAATAACTAATTGATCCAGTTGGAGCAACTGCCATTAAATGTGAGTTTGCTAAACCTGTTTTTTTAATTTCTTCAACTAATTGAATTCAATCAGTTTGACTTGGAATTTGAACATCATAATCTTTAAATAATTCTTTTACTCTATTTGTTTGTGGTGTTCATTTATCAAATTCACATTTAGTATATTTATCAAATCAAGAACCATCAGCAAATCTTGATTCATCAAATGAAGCAAATTTTTCAAATTCTTGAGCTAATTTATTTGAAGCTTTAAAAGCATTATAAGCAACTGTATAAAAGAACATATTAGTAAAATCAACAGCTTCAGGTGAGTCATACATAATTTTATTAGTTGCTAAAAATCCATGTAAATTCATAGCTCCTAATCCAACAGCATGATTTTGTGCATTTCCTTTTTGAATTGAAGGAGCAGCACTTAAATCTGAATTTCTTGAAACAATATCTAAAGCAGATATAGCATTATAAATAGAATCTGAAAATTCTTTTCCTGATTTCATCATCTTATCAATATTTAAACTACCTAAATTACAGCAAATATCTTCTCCAGTTTTTACAAATGATAAATCAGAACTATATTCACTTGCTGTACTTACTTGAACAATTTCACTACATAAATTACTCATAATAATTCTTCCTTTTTTATCATGAGCATTTCTTCTATTAACAGTATCTTCAAATAAAATATATGGATATCCACTTTCAAAATGTAATTCAGCAACAGTTAAAAAGAATTTTCTAGCACTAATATATGTTTTTTTAATATTAGGATTTTCTAACATTTCATAATATTTTTCAGTAATTGAAATATCTGATAATGGTTTGTTATATACTTTTTGAACATCATAAGGACTAAATAAAGCCATATCTTTATTATCTCTAGCTAATTCAAAAGTNATATCTGGAATTACTAATCCTAATGATAAAGACTTAATTCTAATCTTTTCATCAGCATTTTCTCTTTTAGTATCTAAAACTGAAATAATATCTGGGTGATGGGCTGAAATATAAACAGCTCCAGCTCCTTGACGTTGACCTAATTGATCAGCATAAGTAAATGAATCTTCTAAAATTTTCATTACTGGAATTGGTCCTGAACTTAGACCTGAAATATTTTTAATAGGAGAACCTGTTTCTCTTAAATTTGTTAAACAAATCGCAACTCCTCCACCTCTTTTTGAAAGTTGTAATGAAGTTGAAATGGTTCTACAAATTGATTCCATGTTATCTTCTGTTCTTAATAAATAACATGAAACATACTCTCCTCTATGTTTTTTAGCTGCATTTAAAAAAGTAGGGGTTGCTGGTTGAAATCTACCTAACATCATATCTTTTAATAAGTTTTTTGCTTTAGTAAAATTACCATTACCTAAAAATAGAGCATTCATTAATACTCTATCTGTATAAGTTTCTAAATACATTGTAGTATCAAAAGTTTTTAATCCATAAGCATTAAAGAATTTTAAAGCTCCCATAAAGCTTGGAAAATGATGGTTAAATGAATAAGCATAATCATTTAATTGACTAATCTGATCAAAACTATATTTATTTAGGATTTCTGAATCATAATACTTATTTTCTAATAAATAATCTAATCTTTCTTTTAGACTAGAAAATTTTTTCATTCTAGGTTCAATATAGTTTTTTAAATATAATTCAGCTGCTTTAACATCTAATTGAAAATTATCTTGATCTTTTGAAAAGATCTTAGATCTAGCATTTAATTTAATATATTCATCATCAACATCATCTAAAACGATTGTGTTTTTATTTTCTTTCATTATTACCATCCTCTCAAAACTTTAATAGTATTTGTTTTATTTGACTAACATCATATTGAGTTCCTAATAATTCAAATTGGTATAAAAAAGGAACATTTAATTTTTTAGAAATAATTGGTCCAGCAATTCCAAAAGTATCACCAAAATTAGTGTTACCAGATGAAATAACACCTCTACAAAAACTTCTATTTTCTTTATTATTTAAAAACTTAATTACTTGTTTTGGTACAGCACCTTCAACATATTCTCCCCCACCACTATAAGTTGGAGTAACTAAAACATAATCTCTATTAACACTAATTGATTGATCTAATTCATAAGGAATTCTAATATTTTCAATTTCTAATTTTTGAATAAATCTATGAGTGTTATTTGAAATTGAAGAAAAATAAACTACAAAAGGTATACCAACTGGTTTAATTACATCTTTATCTGTAACTTTTTTAACATTTGAGTGCATAATAACTCCTAAAATTCTCAGTCTTCGTCTTCTGTTTCAACTGAAACTCCCATCACATATGAAGAACCATTTCCAGAAAAGAAATCGTGATTTTCATCAGCTCTTGCAGATAATTGATTAAAAATTTCTGGTTCAATTCTAGTTTCTTCTTCACTAAATGGTGAATCATATCCTAGGTTTTGTAAAAACTTACCTGCATTATAAACACTAAATCTAATAGCATCATCAACAATATCAAATCCAGCATATAACTCTTTTAAATAAGCAGTTTCTAAATCAATTAATTCATATAATAATTTAAAAACAAACTCTTTCATTTCAGCTTGTTTTTCAACTGGTAATTTAGCAACCTTTTTTTGATATTTATAACCACTATAATAATTATGAATTACTTTATCTCTTAAAATTAGTCTTATGATATCTGAAGTATTTGGTAATTTACCTCTAGCAGATAAATAAAATGGCAAGTAAAATCCCCCATATAATAAAAATCCAGGCATTAAGGCAGCTGCAACTTTAGATTTTAATGGGTCAGTTCCTGTATAGTATGGAATTAAAGCTTTTGCTCTTTTTTGTAGAGTTTCAGTTTTAACAACTCACTCATGAGCTTCTTCAATTTGTTCACTTGAACATAATGTTGAAAAAATAGTTCCATAAGAACGCGCATGAACACCAACCATAAAAGCAAAATTAGAATAAATTACTTGTTCATGATCAGTTAATGAGTGTTCAATTTGAGCAACATCTCCAACAGTTGCTTGAACTGTATCTAATAAAGTTAGACCAGTAAAAGTTCTAGTTACTAATTGTTGTCATTCACTAGATAAACTTCTTCATGATGATAAATCATTTGATACTGGAATTTTTTCTGGTAATCAAAAGTTTTGAGTAATTCTATTTCAAACTTCTAGATCCTTTTCATCATTAATAACATTTCAGTTAACTGATCTTAAATTTCCTTTGAAATTATTTTTAACAAATTCGATTGGTGAAACTGATTCATGATAATATTTTTGTTCTTTTGCCATAGTAATTTATCCTTTCTTTTTTTGTCATGTAAACTCATTATATTATAAATTTGATAAAGTTAAGATTTAACCACTTAAAAAGAATTTCATGACTTGTAATAGTATTTTAATAGTAAAAATTGAGTATATTTAACTAGATTTTTATTTTTTTTGTGATATTTAAAAATAGGAAAAATCAATTTCTAGAAAGTAATAGCACATTAAAAAAGTATATAATTTTATATAGCGTATTAAGAGTAAATGTTTAAATTTCACTTATTTTAAGATATTATTATATAGTAACATTTTGGAGGTTTTTATGATAAATCTATTAGCTTCAACAACTAAATTAGCTCAACAATTAATTTTAGGATTTGAAATCTTTATTTTTATTATTGCTTTTATAATGATCGCTATAGGTTTATTACAAAATAAACAATCTCAAACTGGACTAAGTGCTTTAAATGGTGGAAACGAAGAACTGTTTTCTAATTCAAAAGAACGTGGATTAGACAAAACTCTTTCTATTTGAATGCTGGTTTTAGGAATTATATTTTTTATAATAGCTTTAACAATAAGCATCATTACAAACACTATGTTATAAACTAGTGTTTATTTTTTTATTTAAAAAGGAGTAGTATGGAATCTAAAATTATTGAAATTTTAAAAAAGAACCATCATAAAATTAGTTTAAATAAACTTTTAACTTATTTTAAAGCTCTAGATTATTCATTAGTTAAAAACTACTTAGACCAATTAGAAAAAAATAATAACATTGCTATTTCATTAGAAAATAATATTTATTTATTAGATGAAATTTATAAAAAGGGAACTATTAAATTAAATCCAAAAGGTTTTGGTTTTATAAATGATGTTAATGATTTAACTACAGAAGATCATTTTATAGCTGGTGTTGATTTAAATAATAGTATTCATCAAGATGAAGTAGTTTATATTTTAAAACAAGAAGAAGATAATAGATTAAAAGCTATAGTTATTGATCTAATTAAAAGAAATAAAGTTTATTTAATTGGTGAAATAAATAGAAGTTTTGATAAAAGATTTTTAGATTTCATTCCAAACGATAAGTCATTTGATAGTTTTAGATTTGTAATTGTTAATAAAAACGAATTTAAATATGAAGAATTTAATATTATTAAAGCAAAAATTATAAGTTGTAAAGAACGTAAAATTTTTATAAGACTTATAAAAATTATTGGTAATAGTAAAAAAGCAAGTGATCGCATTTTAGCAATAGCTGAAGAATTTGACATAAAAACTAGTTTTGATAAACAAACTCTAGATAATGCAAAACAAATTAATTTATCAACTGATAAACTAGAAAAAGAGTTTTTAAAAAGACAAAATAATTCTTTAGTTAATAAAACGATCGTTACAATTGATGGAATTGATTCAAAAGATTTAGATGATGCAATTTGTGTTGAAAAATTAGAAAACAATAATTATAAACTATTTGTTGCTATTGCTNATGTTTCTTATTTTGTTAGATATAAAACCAGTTTAGATAAAGAAGCTTTATTAAGAGGTAATTCGACTTATTTAGCAAATAAAGTAATTCCAATGCTACCAAACATCTTATCTGATGATTTGTGCTCATTAAATCCAAATACTAAAAAATTAGTTTTTGTATGTGAAATGGAATTTGATAATAATGCAAACATGTTAAATAAAAAAGTTTATGAATCAGTGATCATTTCTAAAGCTAGATTAAATTATGATGAAGTAAATAATTACTTTAAAACTAAAACTTGAACTCATGATGATAAAACTAAAAAAATGTTAGACATAGCTTATGAGTTGTATAAAAAATTAGAAGATCTAAAAGCTAAAAAGGGAACTATTAGTTTTGATGTTAGAGAACCAAAAATTATTTTAGATAAAAATTTAAATGTAATTGATATTAAAACAAAAACAGCTGATCAAGCTGAAAAATTAATTGAACAATTTATGGTAAGTTGTAATGAAGCAGTAGCTGAATTAATCTATCAAAAAGATTTACCTTTTTTATATAGAAATCATAATAAACCAGATGAAGATGAATTAATTAATTGATATAAATCACTAAAAACATTTGGAATTAATCCTAAATTAACTAATAAACAAGTTTTAGATCCAATATTTATTAATCACACTTTAAGTCAAATTAAAGAACAAATTAAAGACGAAACTGAAGTTGAATTATTAAATATTTCTTTATTAAGATATATGGATAAAGCTAAATATGGATTAGAAAATATTGGTCATTTTGGTTTAGCTAGTGATTGTTATACTCATTTTACTTCTCCAATTAGAAGATATTCAGATTTATTAGTTCATAGATATTTAAAACAATATCTAATTACAAAAGATCTAGAAAAAACTAGTTTAGAAAATAATACAAATTATGTTAATAAAGTAAGTAATATTATTAATGATACTGAAACTAAAAGTGTTGAATGTGAAAGAGAAGTTATTAAGGCATGTATGTGTGAATATATGCTAAATAAAGTTAATAATACTTATACAGCAACAATTTCAGCAGTTTTAAAATTTGGAATTTTTATTCAATTAGATAATTTAGTTGAAGGATTAGTTCATATTTCAAATATGAATAGTGATTTAGTATATGATGAAACTAACCGTATTTTAATTAAACCTGATAATACTTATTATAGAATGGGTCAAAAAGTCAAAGTTAAACTAATTAATGTTGATATTAAAAAAAGAACAATTGATTTTGTTTTAATAGAATAAGAGGTTTTTATGTCTGAACATTTAATTGTTAAAAATAAAAAAGCTTATTTTAATTATGAAATCATTCAAACTTATCAAGCAGGAATTGTTTTAAATGGTCCTGAAATAAAATCAATTAGAAATCATGATGTTTCTATTAATGAAGCTTTTGTTTTAATTAGAAAAAAAGAGATTTATATTTTAAATATGAATGTTAAAAAATACCAGTTTGCTAATTATATTAAAGGCTTAGAAGAAACTAGAACTAGAAAACTGTTATTACATAAAAAAGAAATAATTAAAATATTAAATAAAATAAAACAAGAAAATCTAACAATTATTCCTGTTAAACTATATTTTAAAAATGATTATGTTAAATTAGAAATCGCTTTAGCTAAAGGTAAAAAGCTTCATGATAAAAGACAAACTATTAAAAAAAGAGATACAGAAAGAAAAGAATTAAAAGATTATAAATAATGATTATATTTACTCAACAAACTAGTCATATACCAACTTGAGCTGTTTATTTAATTTTAGTTTTAGGTTTTTTTGGTTTAATTATTTCATTATATGGAGCAAGTACTGCTTTTAAATATAATAAAAACTTAAAAAATAAAAACAATTATAAAAAAGTTTTAAATCTTTTATCAACACGTCAAGCTTATAGTTGAACTCAAATTGATAATATAGATCAACAAGGTTATTTTTTAATAGGTATAACTTTAAAAGATTCTAATTATAATAAAGAAAAACCTTTAATTACTTTATTAAAAATAACAGATTTAAAAACTGATATTAGTAGATTTAAATCTAATATAAATGATTATAAAAACATAATTAATTATTTAAAACAATACAATTTAACTACTAAAGATTTAGTATTTATTATTATAGAAAAAGTTGAAAATTCTGATGAATTAGATAAGCTTTTAATAGAATGAAATTCTTTAATAAGTGCCTAATATACTAAGTGAAATAAAAAAAGAAGTCAATAATTGCATTAAATTCCAAAATTTTAATTTATGCAAATTAAACTTCTTTTTTTTAATATACTATTATAAAGAGGTGTACAAATATTTTTATGTTATTAATGTTAGTAGTTAAAACTGAATTGATAGTTAATTTAGGGGTTTTAGGGTTTGGTATTTTATTTATCTTATTAGGTTTGTTTTTATTTTGAAAACAAAAAAACAAAAACCGTTATGGTTTTGAAAACCAAAACAGAGAATCAAAAAATGCTTGAGAATTTGTTAAAAAAAACTTTTACTTACTAGTATTAACTATTGGATTTTTATTTATAATAACAGCAATTATAACACTAATAACAAAATAATAACACAAAACTAATTAACATCTTTTTTATAGAAAGGATTTAACATACTCATGTTAACACAGACAAACAAGAGTAGTTTTAAAGATAAATTAAAGGCATTTGGTGCTAATATTATGCCTACTTTATCTAAACTAAGTAAAGCATTCTTATTACCTATTGCTTTATTACCGATTGCTGGTGTGTTTTTAGGAGTTGGAGCAGCTATTGCTGCAAATACACCTGAACAATCTGCTTTATGATTTATTGGTAAAGTTATGGGGAATATGGGAGATGTTTGTTTTGGTAACCTACCTGTATTATTCTGTATTTCTGTAGCTTTAGCATATACTAAAGATTCAGGAGTTGCAGCGATTACTGCTGTAGTTGGGTTCTTAGTATTTAACGGTGTTCAAGCTCCTTTATTTACTCAAGGTCAAGTACAAAGTGATAAGGTATCAGAATATAGTTTATTATGATACAAACACGTATCTAACTCACTAACAGGATCAAATATGGGGATCTTGTCACTTAACACTGGAGTTTTAGGAGGAATTTTTGTTGGAGCAATCGCTGCTAAATGTTATAATAAATTTCACCAAACTCAATTACCAACTGCTATTAGTTTCTTTAGTGGAACAAAACTAGTTCCTATTATTACATTCGTAGCAGTTATTCCTCTATCATTTATTTTTATGATGGCTTGACCTGTTATTGGTTTAGGATTAAATAAATTTGGTCAAGTTTCAGGAACTTTACCTTATGGAACTGATTCATTAATTTTTGAAATTGTTGAACGTTCATTAGTTCCATTTGGTCTACACCACGTATTCTATGCTCCATTATGATGAACTAGTGCTGGGGGATCAATTGCTGAAGGATTTAACAATTTAAGCAAACAATCTGAAGCAATTCAAAAAGTATTTGTTGATTCATATAATAGTTTACATGGTACTCACCATACTAAATTACAAGAAATTATTGATATAGTTCAAAAAAACAAGGAGCTATGAGGAGCTGTTGGCTGCTTTAGCTATGTGATTAGCAGCACCAAAAGAAAATAGACAACAAGTATTTGGAATTTATTTCTCAGCTGCGTTTACTTGTTTCTTAACAGGTATTACAGAACCTATTGAATATACATTCTTATTTGTTGCTCCATGATTATTCTATGGTGTTCATATGCCATTAGCATCAATTGCATTCTGAGCAACAGGAGCTTTACAAACTCACATTACTCAAACTGTTTCAGGTGGAATTATTGATTACATCGTATTTGGAATTATTCCATTTATTAGTGGAGCTATGAAACCAATATCAGCATTTGGGGTATTAGGAGTTGCTGTTGTATTAGCACCAATTTACTTCTGTGCATTCTACTTCTTAATCAAACTATTTAATGTTAAAACACCAGGTAGAGATGGAAATGCTGAAGCTAAATTATACACTAAAGCAGATTTCAAAGCTTCTAAAGGATTAAATGNTGATGGTTCAAAAATGAGTTCATCAACAGATGATAAAGAACAAGCTAGATTAGCAAAAGCTGCAGCTATTATTGAATATCTAGGTGGAGAAGAAAACATTGTTGATGTTGATTCTTGTGCTTCAAGATTAAGATTAACTGTTGTTGATGCTAAAAAAGCTGATATTGATGGAATTAAATCTTTAGGTGGAACAACTGGAGCTTTAGTAAAAGGAAATAACATTCAAATTGTTTATGGTGGAGAACAAGAAGCTATTAAACCAAGAATGCAAAAACTTTTAGAACAACAAAGACAAGAAAAAATGATGGGTCATTCAGAAATGAAATCTGAAGAAATGAAATCAGAAAACATGAGTATGACTTGTGAATCAAATCAAGCTTGTGATAAAAAAGATGAAGCTTGTGGTTGTGAAAAAGATTGCATGTGTGAAGAACCAAATAAAGATGAAGAACAACCTGTAAGTGAGATGAAAGTTGAAGAAAAAGTAGTTGATGAAATGAAAGTTGAAAAACCAAAACAAACTAGAACAAAATCAACTAAAGCAAAATCAACAACTTCAAAATCTACAAAATCTACTTCTAAATCAAGTTCAAAATCAACTAAGTCAACTAGTTCTAAAGCAAAATCAACATCTTCTAAACCAAAAACAACTAAAGCTAAATCAACTAGTTCTAAAACTAAAACAACAAAATAA

Protein sequences of DBSCAN-SWA_1

>LS483508|895613:909523|903942_906057_+|SRX64542.1|DBSCAN-SWA
MESKIIEILKKNHHKISLNKLLTYFKALDYSLVKNYLDQLEKNNNIAISLENNIYLLDEIYKKGTIKLNPKGFGFINDVNDLTTEDHFIAGVDLNNSIHQDEVVYILKQEEDNRLKAIVIDLIKRNKVYLIGEINRSFDKRFLDFIPNDKSFDSFRFVIVNKNEFKYEEFNIIKAKIISCKERKIFIRLIKIIGNSKKASDRILAIAEEFDIKTSFDKQTLDNAKQINLSTDKLEKEFLKRQNNSLVNKTIVTIDGIDSKDLDDAICVEKLENNNYKLFVAIAXVSYFVRYKTSLDKEALLRGNSTYLANKVIPMLPNILSDDLCSLNPNTKKLVFVCEMEFDNNANMLNKKVYESVIISKARLNYDEVNNYFKTKTWTHDDKTKKMLDIAYELYKKLEDLKAKKGTISFDVREPKIILDKNLNVIDIKTKTADQAEKLIEQFMVSCNEAVAELIYQKDLPFLYRNHNKPDEDELINWYKSLKTFGINPKLTNKQVLDPIFINHTLSQIKEQIKDETEVELLNISLLRYMDKAKYGLENIGHFGLASDCYTHFTSPIRRYSDLLVHRYLKQYLITKDLEKTSLENNTNYVNKVSNIINDTETKSVECEREVIKACMCEYMLNKVNNTYTATISAVLKFGIFIQLDNLVEGLVHISNMNSDLVYDETNRILIKPDNTYYRMGQKVKVKLINVDIKKRTIDFVLIE
>LS483508|895613:909523|907419_908409_+|SRX64546.1|DBSCAN-SWA
MLTQTNKSSFKDKLKAFGANIMPTLSKLSKAFLLPIALLPIAGVFLGVGAAIAANTPEQSALWFIGKVMGNMGDVCFGNLPVLFCISVALAYTKDSGVAAITAVVGFLVFNGVQAPLFTQGQVQSDKVSEYSLLWYKHVSNSLTGSNMGILSLNTGVLGGIFVGAIAAKCYNKFHQTQLPTAISFFSGTKLVPIITFVAVIPLSFIFMMAWPVIGLGLNKFGQVSGTLPYGTDSLIFEIVERSLVPFGLHHVFYAPLWWTSAGGSIAEGFNNLSKQSEAIQKVFVDSYNSLHGTHHTKLQEIIDIVQKNKELWGAVGCFSYVISSTKRK
>LS483508|895613:909523|907117_907369_+|SRX64545.1|DBSCAN-SWA
MLLMLVVKTELIVNLGVLGFGILFILLGLFLFWKQKNKNRYGFENQNRESKNAWEFVKKNFYLLVLTIGFLFIITAIITLITK
>LS483508|895613:909523|906066_906513_+|SRX64543.1|DBSCAN-SWA
MSEHLIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNVKKYQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPVKLYFKNDYVKLEIALAKGKKLHDKRQTIKKRDTERKELKDYK
>LS483508|895613:909523|898722_899568_-|SRX64537.1|DBSCAN-SWA
MYKKNKKPKYNKEKTICKEIGYFLNKNNEYQIHPFPSTVNKVPKKLPEFITNLTLAFWNNENEIICNLDKWNLKNVTSLNRMFKDAKSFDQDISNWNTSNVVDMQLLFDGAENFNQNLNKWDTSNVLNMEAMFRSAYLFNIDLNKWNTSKVQNMRSMFYEARSFNGDISTWDVSSVKHMEYMFYGVLKFNQDISSWNTKNVINTRSMFKNAIGFNQNISYWNTSNIKEMSWMFHNARNFNQDISSWNVSKVNLFNSFSNNSKIDKNKKYLPKKFISKISKT
>LS483508|895613:909523|908380_909523_+|SRX64547.1|DBSCAN-SWA
MWLAAPKENRQQVFGIYFSAAFTCFLTGITEPIEYTFLFVAPWLFYGVHMPLASIAFWATGALQTHITQTVSGGIIDYIVFGIIPFISGAMKPISAFGVLGVAVVLAPIYFCAFYFLIKLFNVKTPGRDGNAEAKLYTKADFKASKGLNXDGSKMSSSTDDKEQARLAKAAAIIEYLGGEENIVDVDSCASRLRLTVVDAKKADIDGIKSLGGTTGALVKGNNIQIVYGGEQEAIKPRMQKLLEQQRQEKMMGHSEMKSEEMKSENMSMTCESNQACDKKDEACGCEKDCMCEEPNKDEEQPVSEMKVEEKVVDEMKVEKPKQTRTKSTKAKSTTSKSTKSTSKSSSKSTKSTSSKAKSTSSKPKTTKAKSTSSKTKTTK
>LS483508|895613:909523|899673_901836_-|SRX64538.1|DBSCAN-SWA
MKENKNTIVLDDVDDEYIKLNARSKIFSKDQDNFQLDVKAAELYLKNYIEPRMKKFSSLKERLDYLLENKYYDSEILNKYSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYLETYTDRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDXTFELARDNKDMALFSPYDVQKVYNKPLSDISITEKYYEMLENPNIKKTYISARKFFLTVAELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFVKTGEDICCNLGSLNIDKMMKSGKEFSDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNHAVGLGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFADGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIQLVEEIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQINFDNMGYYAMGAYELGADPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGCSSIYYVRIRQDVLENSENYECDACKI
>LS483508|895613:909523|895613_896912_-|SRX64534.1|DBSCAN-SWA
MKNNYKSLVIVGSQWGDEGKGKITDYFSQKADVVVRFAGGDNAGHMIEFNNKRHKVTIIPSGVFNPKVKNIIGNGTVINLKSLVSEIKRLNESNISTDNVFISDRAHLIFDWHTLIDQLQEENRKENKIGTTKRGIGPTYADKAARYGIRICDFQNPNFKDILKENLDYHNQIITKVYNHEPLDFDVIYNELMTNYQFIKNNIIDSGYEVSNLINENKFVLFEGAQGVLLDIDHGTYPFVTSSNCSANNASIGTGIHNKQINKVLGIVKAYNTRVGSGAMVSEIKTELAHKLRERGREYGSNTGKPRRIGWLDLVALKYAIRVGGIDQLFLTLFDVLDTEAKIKICTHYKLDGKIIDWFPASDYELKKCEPLYEELDGWNQDITKVTSFEELPINAQKYIKRIEEIVKVPFLGFSVGPDRKQTILIKGEFDD
>LS483508|895613:909523|897265_897943_-|SRX64535.1|DBSCAN-SWA
MALIEERKKERITSGSXERVLGNKKLGSLISMVHSTSISNGNELEKIILNKCKKVVKDAKELNSILQKEFDDSWDVIIVPKKVIKNSSIKNSMEPDFLIIQKSSETLNIIELKDGWVFDTKKVAGEYQQLINFQNEISKSISFITKIWICSFNNDSKEEIFLGLKSKVPIKHIMTGEEFCDLLNISKQEIQKERQRDSEKNLNFFVTELLKIDDVRNRIIEELSK
>LS483508|895613:909523|902304_903324_-|SRX64540.1|DBSCAN-SWA
MAKEQKYYHESVSPIEFVKNNFKGNLRSVNWNVINDEKDLEVWNRITQNFWLPEKIPVSNDLSSWRSLSSEWQQLVTRTFTGLTLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHEWVVKTETLQKRAKALIPYYTGTDPLKSKVAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLPVEKQAEMKEFVFKLLYELIDLETAYLKELYAGFDIVDDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQLSARADENHDFFSGNGSSYVMGVSVETEDEDWEF
>LS483508|895613:909523|903622_903907_+|SRX64541.1|DBSCAN-SWA
MINLLASTTKLAQQLILGFEIFIFIIAFIMIAIGLLQNKQSQTGLSALNGGNEELFSNSKERGLDKTLSIWMLVLGIIFFIIALTISIITNTML
>LS483508|895613:909523|897942_898689_-|SRX64536.1|DBSCAN-SWA
MFFKNGGVKMKLSPSVFSNKRTKISELGKDIFKNERMEFNHKYGLDGLVILNNIKDNAIPVVFFDPQYRGVLDKLSYGNEGKRQIKRSELQQMTEEKIVHFIREMDRVLIPTGHLFLWVDKFHLCQGISDWIKDTSLSIVDMIVWDKEKMGMGYRTRRQCEYLIVLQKKPIRAKNVWRLRNIRDVWKEKIVGKVHPHQKPIELQKILIQAVSNPGDVIMDVAAGSFSVLTSCIETGRLFIGTDIKEKQ
>LS483508|895613:909523|901822_902296_-|SRX64539.1|DBSCAN-SWA
MHSNVKKVTDKDVIKPVGIPFVVYFSSISNNTHRFIQKLEIENIRIPYELDQSISVNRDYVLVTPTYSGGGEYVEGAVPKQVIKFLNNKENRSFCRGVISSGNTNFGDTFGIAGPIISKKLNVPFLYQFELLGTQYDVSQIKQILLKFWEDGNNERK
>LS483508|895613:909523|906512_906998_+|SRX64544.1|DBSCAN-SWA
MIIFTQQTSHIPTWAVYLILVLGFFGLIISLYGASTAFKYNKNLKNKNNYKKVLNLLSTRQAYSWTQIDNIDQQGYFLIGITLKDSNYNKEKPLITLLKITDLKTDISRFKSNINDYKNIINYLKQYNLTTKDLVFIIIEKVENSDELDKLLIEWNSLISA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
SRX64534.1|895613_896912_-	adenylosuccinate synthase	L7Y4J5	Megavirus	2.5e-57	34.6
SRX64535.1|897265_897943_-	hypothetical protein	NA	NA	NA	NA
SRX64536.1|897942_898689_-	site-specific DNA-methyltransferase	A0A0C5AFG8	Paenibacillus_phage	8.6e-15	26.6
SRX64537.1|898722_899568_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA
SRX64538.1|899673_901836_-	ribonucleoside-diphosphate reductase	V9VI16	Lactococcus_phage	5.5e-163	44.3
SRX64539.1|901822_902296_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	1.0e-13	35.0
SRX64540.1|902304_903324_-	class 1b ribonucleoside-diphosphate reductase subunit beta	B5LJM6	Mycobacterium_phage	2.5e-97	53.7
SRX64541.1|903622_903907_+	preprotein translocase subunit SecG	NA	NA	NA	NA
SRX64542.1|903942_906057_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.0e-60	32.6
SRX64543.1|906066_906513_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.1e-20	38.5
SRX64544.1|906512_906998_+	hypothetical protein	NA	NA	NA	NA
SRX64545.1|907117_907369_+	hypothetical protein	NA	NA	NA	NA
SRX64546.1|907419_908409_+	PTS eiic domain protein	NA	NA	NA	NA
SRX64547.1|908380_909523_+	PTS eiic domain protein	A0A2I7SAJ6	Vibrio_phage	4.9e-09	45.5