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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
LR130529 Bordetella pertussis isolate FR5810 genome assembly, chromosome: I 5 crisprs DEDDh,csa3,cas3,DinG 0 0 49 0

Results visualization

1. LR130529
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR130529_1 188812-188905 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR130529_2 370277-370361 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR130529_3 1296869-1296978 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR130529_4 2511845-2511960 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
LR130529_5 3583238-3583354 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 30618 : 68770 44 Bacillus_phage(22.22%) transposase NA
DBSCAN-SWA_2 145868 : 190619 45 Lake_Baikal_phage(16.67%) transposase NA
DBSCAN-SWA_3 198815 : 290261 104 Streptococcus_phage(33.33%) transposase,tRNA,integrase attL 216438:216458|attR 224606:224626
DBSCAN-SWA_4 317912 : 343811 30 Acanthamoeba_castellanii_mimivirus(33.33%) protease,transposase NA
DBSCAN-SWA_5 354426 : 405287 50 uncultured_Caudovirales_phage(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_6 414367 : 456073 45 Planktothrix_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_7 484849 : 513534 32 Bacillus_virus(50.0%) tRNA,transposase NA
DBSCAN-SWA_8 541352 : 570818 35 Sphingobium_phage(33.33%) transposase NA
DBSCAN-SWA_9 576344 : 632979 55 Synechococcus_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_10 645357 : 695378 51 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_11 885257 : 973952 97 uncultured_Mediterranean_phage(10.53%) tRNA,integrase,transposase attL 932701:932718|attR 977348:977365
DBSCAN-SWA_12 994119 : 1023054 37 Chrysochromulina_ericina_virus(12.5%) tRNA,transposase NA
DBSCAN-SWA_13 1247146 : 1303590 60 Pandoravirus(14.29%) transposase,tRNA,integrase attL 1240203:1240223|attR 1302516:1302536
DBSCAN-SWA_14 1390893 : 1459763 69 Tupanvirus(20.0%) transposase,protease,integrase,tRNA attL 1393569:1393587|attR 1413456:1413474
DBSCAN-SWA_15 1479633 : 1543469 59 Erwinia_phage(33.33%) protease,transposase NA
DBSCAN-SWA_16 1572999 : 1605808 35 Chrysochromulina_ericina_virus(16.67%) tRNA,transposase,protease NA
DBSCAN-SWA_17 1636827 : 1749396 113 Bacillus_virus(15.38%) protease,integrase,transposase,tRNA attL 1718767:1718789|attR 1749471:1749493
DBSCAN-SWA_18 1759171 : 1859254 104 Planktothrix_phage(18.18%) tRNA,transposase,protease NA
DBSCAN-SWA_19 1867279 : 1915463 54 Streptococcus_phage(20.0%) protease,transposase NA
DBSCAN-SWA_20 1920835 : 1974615 53 Burkholderia_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_21 1996297 : 2032462 42 Salmonella_phage(50.0%) transposase NA
DBSCAN-SWA_22 2086362 : 2167413 84 Salmonella_phage(16.67%) protease,transposase,tRNA NA
DBSCAN-SWA_23 2182777 : 2232927 53 Staphylococcus_phage(22.22%) protease,transposase NA
DBSCAN-SWA_24 2265289 : 2314364 51 Mycoplasma_phage(20.0%) transposase NA
DBSCAN-SWA_25 2340935 : 2375970 38 Planktothrix_phage(20.0%) protease,transposase NA
DBSCAN-SWA_26 2415082 : 2472369 60 Klosneuvirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_27 2492458 : 2526657 40 Agrobacterium_phage(14.29%) protease,transposase NA
DBSCAN-SWA_28 2554437 : 2595128 42 Klosneuvirus(25.0%) tRNA,transposase NA
DBSCAN-SWA_29 2605976 : 2639029 41 Klosneuvirus(33.33%) transposase NA
DBSCAN-SWA_30 2652320 : 2689708 43 Erysipelothrix_phage(100.0%) transposase NA
DBSCAN-SWA_31 2724495 : 2758338 32 uncultured_Caudovirales_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_32 2826316 : 2877520 59 Bacillus_virus(33.33%) transposase,tRNA,integrase attL 2824600:2824616|attR 2844112:2844128
DBSCAN-SWA_33 2918468 : 2942139 29 Yellowstone_lake_phycodnavirus(33.33%) tRNA,transposase NA
DBSCAN-SWA_34 2948610 : 2980986 39 uncultured_Caudovirales_phage(40.0%) tRNA,transposase NA
DBSCAN-SWA_35 3002295 : 3026815 26 Tetraselmis_virus(33.33%) transposase NA
DBSCAN-SWA_36 3062762 : 3111855 53 Ectocarpus_siliculosus_virus(12.5%) transposase NA
DBSCAN-SWA_37 3114922 : 3159131 47 Streptococcus_virus(10.0%) tRNA,transposase NA
DBSCAN-SWA_38 3169810 : 3215331 52 Tupanvirus(25.0%) tRNA,transposase NA
DBSCAN-SWA_39 3226603 : 3238857 16 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_40 3281131 : 3316640 39 Sulfitobacter_phage(50.0%) transposase NA
DBSCAN-SWA_41 3342641 : 3394050 54 Feldmannia_species_virus(33.33%) transposase NA
DBSCAN-SWA_42 3466836 : 3634140 165 Planktothrix_phage(21.05%) tRNA,integrase,transposase,protease attL 3565581:3565600|attR 3620363:3620382
DBSCAN-SWA_43 3649615 : 3692154 48 uncultured_Mediterranean_phage(37.5%) tRNA,integrase,transposase attL 3646144:3646160|attR 3694784:3694800
DBSCAN-SWA_44 3703758 : 3752111 50 Erysipelothrix_phage(20.0%) transposase NA
DBSCAN-SWA_45 3771533 : 3793896 27 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_46 3815160 : 3874700 59 Ostreococcus_lucimarinus_virus(25.0%) holin,transposase NA
DBSCAN-SWA_47 3908116 : 3952628 39 Klosneuvirus(20.0%) integrase,transposase attL 3938284:3938302|attR 3960275:3960293
DBSCAN-SWA_48 3966918 : 4009834 42 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_49 4019126 : 4051813 48 uncultured_Caudovirales_phage(18.18%) terminase,tRNA,tail,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage