CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
LR025092	Klebsiella pneumoniae isolate KP9201 genome assembly, chromosome: 1	3 crisprs	cas3,DEDDh,WYL,DinG,csa3,RT	7
LR025095	Klebsiella pneumoniae isolate KP9201 genome assembly, plasmid: pOXA-48_920	0 crisprs	NA	0
LR025093	Klebsiella pneumoniae isolate KP9201 genome assembly, plasmid: 2	0 crisprs	c2c9_V-U4,cas14j,csa3	3
LR025094	Klebsiella pneumoniae isolate KP9201 genome assembly, plasmid: 4	0 crisprs	DEDDh	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: LR025092_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR025092_1

365123-365208

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR025092_1

>merge|LR025092|1|365123-365208|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>LR025092|1|1|365123-365208|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
LR025092.1\|VAX82375.1\|359215_361564_-\|Organic-solvent-tolerance-protein	unknown	unknown	gnl\|CDD\|235158
LR025092.1\|VAX82378.1\|363355_364981_-\|Sensor-histidine-kinase-CitA	unknown	unknown	gnl\|CDD\|225827
LR025092.1\|VAX82372.1\|356061_356883_-\|Ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
LR025092.1\|VAX82374.1\|357874_359161_-\|Peptidyl-prolyl-cis-trans-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
LR025092.1\|VAX82369.1\|353755_354235_+\|Dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
LR025092.1\|VAX82376.1\|361807_362635_+\|DnaJ-like-protein-DjlA	unknown	unknown	gnl\|CDD\|236512
LR025092.1\|VAX82382.1\|368135_371042_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
LR025092.1\|VAX82384.1\|373762_374458_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
LR025092.1\|VAX82373.1\|356879_357869_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-1	unknown	unknown	gnl\|CDD\|234696
LR025092.1\|VAX82370.1\|354828_355677_-\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	unknown	unknown	gnl\|CDD\|273208
LR025092.1\|VAX82379.1\|365305_366670_+\|Citrate/malate-proton-symporter	unknown	unknown	gnl\|CDD\|377030
LR025092.1\|VAX82380.1\|366849_367389_+\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	unknown	unknown	gnl\|CDD\|163145
LR025092.1\|VAX82385.1\|374595_376098_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
LR025092.1\|VAX82388.1\|379129_379897_+\|Inner-membrane-protein-YabI	unknown	unknown	gnl\|CDD\|223659
LR025092.1\|VAX82377.1\|362667_363366_-\|Transcriptional-regulatory-protein-CitB	unknown	unknown	gnl\|CDD\|226931
LR025092.1\|VAX82381.1\|367463_368123_-\|Ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|236659
LR025092.1\|VAX82383.1\|371229_373587_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
LR025092.1\|VAX82386.1\|376108_377818_-\|Ribulokinase	unknown	unknown	gnl\|CDD\|235221
LR025092.1\|VAX82387.1\|378155_379001_+\|Arabinose-operon-regulatory-protein	unknown	unknown	gnl\|CDD\|236717
LR025092.1\|VAX82371.1\|355681_356059_-\|CO2+/MG2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098

Protein	Function_ID	Function_description	E-value
LR025092.1\|VAX82375.1\|359215_361564_-\|Organic-solvent-tolerance-protein	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
LR025092.1\|VAX82378.1\|363355_364981_-\|Sensor-histidine-kinase-CitA	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.22281e-172
LR025092.1\|VAX82372.1\|356061_356883_-\|Ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
LR025092.1\|VAX82374.1\|357874_359161_-\|Peptidyl-prolyl-cis-trans-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
LR025092.1\|VAX82369.1\|353755_354235_+\|Dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
LR025092.1\|VAX82376.1\|361807_362635_+\|DnaJ-like-protein-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
LR025092.1\|VAX82382.1\|368135_371042_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
LR025092.1\|VAX82384.1\|373762_374458_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
LR025092.1\|VAX82373.1\|356879_357869_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-1	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
LR025092.1\|VAX82370.1\|354828_355677_-\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
LR025092.1\|VAX82379.1\|365305_366670_+\|Citrate/malate-proton-symporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
LR025092.1\|VAX82380.1\|366849_367389_+\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
LR025092.1\|VAX82385.1\|374595_376098_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
LR025092.1\|VAX82388.1\|379129_379897_+\|Inner-membrane-protein-YabI	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
LR025092.1\|VAX82377.1\|362667_363366_-\|Transcriptional-regulatory-protein-CitB	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
LR025092.1\|VAX82381.1\|367463_368123_-\|Ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.5539e-160
LR025092.1\|VAX82383.1\|371229_373587_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
LR025092.1\|VAX82386.1\|376108_377818_-\|Ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
LR025092.1\|VAX82387.1\|378155_379001_+\|Arabinose-operon-regulatory-protein	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
LR025092.1\|VAX82371.1\|355681_356059_-\|CO2+/MG2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74

>LR025092.1|VAX82378.1|363355_364981_-|Sensor-histidine-kinase-CitA
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLELSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>LR025092.1|VAX82377.1|362667_363366_-|Transcriptional-regulatory-protein-CitB
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>LR025092.1|VAX82376.1|361807_362635_+|DnaJ-like-protein-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>LR025092.1|VAX82375.1|359215_361564_-|Organic-solvent-tolerance-protein
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>LR025092.1|VAX82374.1|357874_359161_-|Peptidyl-prolyl-cis-trans-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>LR025092.1|VAX82373.1|356879_357869_-|4-hydroxythreonine-4-phosphate-dehydrogenase-1
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>LR025092.1|VAX82372.1|356061_356883_-|Ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>LR025092.1|VAX82371.1|355681_356059_-|CO2+/MG2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>LR025092.1|VAX82370.1|354828_355677_-|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>LR025092.1|VAX82369.1|353755_354235_+|Dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>LR025092.1|VAX82379.1|365305_366670_+|Citrate/malate-proton-symporter
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>LR025092.1|VAX82380.1|366849_367389_+|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>LR025092.1|VAX82381.1|367463_368123_-|Ribosomal-large-subunit-pseudouridine-synthase-A
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>LR025092.1|VAX82382.1|368135_371042_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>LR025092.1|VAX82383.1|371229_373587_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>LR025092.1|VAX82384.1|373762_374458_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>LR025092.1|VAX82385.1|374595_376098_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>LR025092.1|VAX82386.1|376108_377818_-|Ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKENVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>LR025092.1|VAX82387.1|378155_379001_+|Arabinose-operon-regulatory-protein
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>LR025092.1|VAX82388.1|379129_379897_+|Inner-membrane-protein-YabI
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR

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Crispr_ID: LR025092_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR025092_2

1242746-1242823

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCACCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of LR025092_2

>merge|LR025092|2|1242746-1242823|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>LR025092|2|2|1242746-1242823|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
LR025092.1\|VAX83188.1\|1243524_1244832_-\|Adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	unknown	unknown	gnl\|CDD\|181189
LR025092.1\|VAX83192.1\|1247953_1248676_+\|ATP-dependent-dethiobiotin-synthetase-BioD-1	unknown	unknown	gnl\|CDD\|234625
LR025092.1\|VAX83178.1\|1229428_1229860_+\|Universal-stress-protein-G	unknown	unknown	gnl\|CDD\|185353
LR025092.1\|VAX83184.1\|1237512_1239201_+\|Urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
LR025092.1\|VAX83185.1\|1239197_1240724_+\|Histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
LR025092.1\|VAX83179.1\|1229911_1232599_+\|putative-cation-transporting-ATPase-F	unknown	unknown	gnl\|CDD\|319775
LR025092.1\|VAX83177.1\|1228949_1229060_-\|Uncharacterised-protein	unknown	unknown	unknown
LR025092.1\|VAX83194.1\|1250050_1252072_+\|Excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
LR025092.1\|VAX83187.1\|1242977_1243454_-\|putative-kinase-inhibitor-protein	unknown	unknown	gnl\|CDD\|182339
LR025092.1\|VAX83183.1\|1236644_1237370_+\|HTH-type-transcriptional-repressor-YvoA	unknown	unknown	gnl\|CDD\|184961
LR025092.1\|VAX83191.1\|1247205_1247961_+\|Malonyl-CoA-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
LR025092.1\|VAX83190.1\|1246064_1247222_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
LR025092.1\|VAX83193.1\|1248617_1249340_-\|LIV-I-protein-F	unknown	unknown	gnl\|CDD\|223487
LR025092.1\|VAX83186.1\|1240822_1242205_+\|Proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566
LR025092.1\|VAX83180.1\|1232872_1234156_-\|Putative-acyl-CoA-thioester-hydrolase-YbhC-precursor	unknown	unknown	gnl\|CDD\|236709
LR025092.1\|VAX83196.1\|1252320_1253418_-\|Sensor-protein-BasS	unknown	unknown	gnl\|CDD\|236751
LR025092.1\|VAX83181.1\|1234370_1235630_+\|Imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
LR025092.1\|VAX83182.1\|1235626_1236583_+\|Formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
LR025092.1\|VAX83189.1\|1245027_1246068_+\|Biotin-synthase	unknown	unknown	gnl\|CDD\|185063
LR025092.1\|VAX83195.1\|1252249_1252342_+\|Uncharacterised-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
LR025092.1\|VAX83188.1\|1243524_1244832_-\|Adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
LR025092.1\|VAX83192.1\|1247953_1248676_+\|ATP-dependent-dethiobiotin-synthetase-BioD-1	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
LR025092.1\|VAX83178.1\|1229428_1229860_+\|Universal-stress-protein-G	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	7.32546e-44
LR025092.1\|VAX83184.1\|1237512_1239201_+\|Urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
LR025092.1\|VAX83185.1\|1239197_1240724_+\|Histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
LR025092.1\|VAX83179.1\|1229911_1232599_+\|putative-cation-transporting-ATPase-F	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
LR025092.1\|VAX83194.1\|1250050_1252072_+\|Excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
LR025092.1\|VAX83187.1\|1242977_1243454_-\|putative-kinase-inhibitor-protein	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
LR025092.1\|VAX83183.1\|1236644_1237370_+\|HTH-type-transcriptional-repressor-YvoA	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
LR025092.1\|VAX83191.1\|1247205_1247961_+\|Malonyl-CoA-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.36239e-160
LR025092.1\|VAX83190.1\|1246064_1247222_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
LR025092.1\|VAX83193.1\|1248617_1249340_-\|LIV-I-protein-F	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
LR025092.1\|VAX83186.1\|1240822_1242205_+\|Proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
LR025092.1\|VAX83180.1\|1232872_1234156_-\|Putative-acyl-CoA-thioester-hydrolase-YbhC-precursor	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
LR025092.1\|VAX83196.1\|1252320_1253418_-\|Sensor-protein-BasS	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
LR025092.1\|VAX83181.1\|1234370_1235630_+\|Imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
LR025092.1\|VAX83182.1\|1235626_1236583_+\|Formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	6.77924e-178
LR025092.1\|VAX83189.1\|1245027_1246068_+\|Biotin-synthase	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0

>LR025092.1|VAX83186.1|1240822_1242205_+|Proline-specific-permease-ProY
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>LR025092.1|VAX83185.1|1239197_1240724_+|Histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLIGEGKARVRGGDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>LR025092.1|VAX83184.1|1237512_1239201_+|Urocanate-hydratase
MSQSKYRQLDVRAPRGTTLTAKSWLTEAPLRMLMNNLDPDVAENPHELVVYGGIGRAARNWECYDAIVKALKNLESDETLLVQSGKPVGVFKTHENSPRVLIANSNLVPHWATWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYQGSLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQATSLDDALARIKKYTAEGRAISIALCGNAAEIVPELVKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>LR025092.1|VAX83183.1|1236644_1237370_+|HTH-type-transcriptional-repressor-YvoA
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>LR025092.1|VAX83182.1|1235626_1236583_+|Formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIARAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEVAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLARLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARAAARVAWQIAHWWR
>LR025092.1|VAX83181.1|1234370_1235630_+|Imidazolonepropionase
MKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDANGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASMHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>LR025092.1|VAX83180.1|1232872_1234156_-|Putative-acyl-CoA-thioester-hydrolase-YbhC-precursor
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>LR025092.1|VAX83179.1|1229911_1232599_+|putative-cation-transporting-ATPase-F
MNTDKPGAPYYQRSVEETLASVQSSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALLKAVMGHWIDMAVILAVAVVNALIGFIQESNAEKSLQSIRNMLSSEAVAIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNLRVEEAILTGESTVVEKTTEPLSGDLPLGDRSNLLFSGTTVSSGAGKGIVVATGGDTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVSELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQKAIIRKLPTVETLGAMTVICSDKTGTLTMNEMTVKAVITADSVYRVEGDSYEQVGKIYAIDDPTPVTIAPGSLFERYLRTIDLCNDSQLIKEESGLWKITGGPTEGALKVLAAKVTLPPLTSELRSKIPFDSQYKYMSTLYRLGEEEVVLVTGAPDVLFRLCQYQQSDSGLQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVILLGVAGMMDPPRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIGNAGNAITGRELEVMDDAQLSVAAQQFDIFARTSPEDKFRLVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFVMPTNLAQGLLIVIALLAGNVLPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLLLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>LR025092.1|VAX83178.1|1229428_1229860_+|Universal-stress-protein-G
MYKNIVVPVDVFDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSELVKKNGLAEDASHLYVRSGNVRDQVIALTDELKADVVIVGSRNPGIQTHLLGSEAANIVRYAHVPVFVVR
>LR025092.1|VAX83177.1|1228949_1229060_-|Uncharacterised-protein
MLGYSLLRLGLFVALAIVACTAVGLFTYLVVAALAE
>LR025092.1|VAX83187.1|1242977_1243454_-|putative-kinase-inhibitor-protein
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>LR025092.1|VAX83188.1|1243524_1244832_-|Adenosylmethionine-8-amino-7-oxononanoate-aminotransferase
MVYKSLMTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVASESLRLLESGEWQPQVAAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMATLQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>LR025092.1|VAX83189.1|1245027_1246068_+|Biotin-synthase
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>LR025092.1|VAX83190.1|1246064_1247222_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGQQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHTEDINRLLEVLHGHSE
>LR025092.1|VAX83191.1|1247205_1247961_+|Malonyl-CoA-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAISELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>LR025092.1|VAX83192.1|1247953_1248676_+|ATP-dependent-dethiobiotin-synthetase-BioD-1
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>LR025092.1|VAX83193.1|1248617_1249340_-|LIV-I-protein-F
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>LR025092.1|VAX83194.1|1250050_1252072_+|Excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>LR025092.1|VAX83195.1|1252249_1252342_+|Uncharacterised-protein
MQKINFREYLAVATALVIIVAFFHQWVLTF
>LR025092.1|VAX83196.1|1252320_1253418_-|Sensor-protein-BasS
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIRVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH

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Click the colored protein region to show detailed information

Crispr_ID: LR025092_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

LR025092_3

4157770-4158055

Orphan

Consensus_repeat	Method
CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCT	PILER-CR

2 spacers

The CRISPR arrays of LR025092_3

>merge|LR025092|3|4157770-4158055|PILER-CR
CTGACCGATAAGCCGCCTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCGCGTCACGGGTTCAGATAGCAAAAACCCCGCCGAAGCGGGGTTTTGACATAAAAAAGGTGAAACTGACCGATGAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCTTTCTCCGCTATTCGAATAGCAAAGACCCCGCCGAAGCGGGGTTTTGACATAAAAAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCT

>LR025092|3|1|4157770-4158055|PILER-CR
CTGACCGATAAGCCGCCTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCG	CGTCACGGGTTCAGATAGCAAAAACCCCGCCGAAGCGGGGTTTTGACATAAAAAAGGTGAAA
CTGACCGATGAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTTATTCATCCT	TTCTCCGCTATTCGAATAGCAAAGACCCCGCCGAAGCGGGGTTTTGACATAAAAAGGTGAAA
CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCT

Protein	Signature genes	Signature genes Name	Protein_function
LR025092.1\|VAX85924.1\|4151972_4152269_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|372871
LR025092.1\|VAX85934.1\|4159733_4160624_-\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|183197
LR025092.1\|VAX85935.1\|4160650_4161421_-\|5-keto-4-deoxy-D-glucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
LR025092.1\|VAX85938.1\|4163171_4164743_+\|D-galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
LR025092.1\|VAX85928.1\|4154614_4155511_-\|HTH-type-transcriptional-activator-AllS	unknown	unknown	gnl\|CDD\|176122
LR025092.1\|VAX85925.1\|4152614_4153007_+\|Inner-membrane-protein-YqjF	unknown	unknown	gnl\|CDD\|225168
LR025092.1\|VAX85941.1\|4167936_4168323_+\|Uncharacterised-protein	unknown	unknown	gnl\|CDD\|237119
LR025092.1\|VAX85937.1\|4162839_4162989_-\|Uncharacterised-protein	unknown	unknown	unknown
LR025092.1\|VAX85927.1\|4154204_4154573_+\|Inner-membrane-protein-YhaH	unknown	unknown	gnl\|CDD\|225694
LR025092.1\|VAX85932.1\|4157298_4157763_+\|tRNA_anti-like-protein	unknown	unknown	gnl\|CDD\|378982
LR025092.1\|VAX85939.1\|4164943_4165807_-\|Ribosomal-RNA-small-subunit-methyltransferase-I	unknown	unknown	gnl\|CDD\|184956
LR025092.1\|VAX85923.1\|4151577_4151976_+\|Inner-membrane-protein-YqjE	unknown	unknown	gnl\|CDD\|227681
LR025092.1\|VAX85931.1\|4156582_4156993_-\|P-pilus-assembly/Cpx-signaling-pathway,-periplasmic-inhibitor/zinc-resistance-associated-protein	unknown	unknown	gnl\|CDD\|226203
LR025092.1\|VAX85936.1\|4161447_4162779_-\|D-galactarate-permease	unknown	unknown	gnl\|CDD\|273326
LR025092.1\|VAX85926.1\|4153091_4154078_+\|Glutathionyl-hydroquinone-reductase-YqjG	unknown	unknown	gnl\|CDD\|223512
LR025092.1\|VAX85930.1\|4156341_4156509_+\|Uncharacterised-protein	unknown	unknown	unknown
LR025092.1\|VAX85942.1\|4168348_4168939_+\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
LR025092.1\|VAX85929.1\|4155615_4156317_+\|Pirin-like-protein-YhaK	unknown	unknown	gnl\|CDD\|224655
LR025092.1\|VAX85940.1\|4165870_4167979_+\|Lipoprotein-activator-of-PBP-from-the-outer-membrane-A	unknown	unknown	gnl\|CDD\|225649
LR025092.1\|VAX85933.1\|4158523_4159669_-\|Glycerate-2-kinase	unknown	unknown	gnl\|CDD\|182392

Protein	Function_ID	Function_description	E-value
LR025092.1\|VAX85924.1\|4151972_4152269_+\|Uncharacterised-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	1.48395e-22
LR025092.1\|VAX85934.1\|4159733_4160624_-\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
LR025092.1\|VAX85935.1\|4160650_4161421_-\|5-keto-4-deoxy-D-glucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
LR025092.1\|VAX85938.1\|4163171_4164743_+\|D-galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
LR025092.1\|VAX85928.1\|4154614_4155511_-\|HTH-type-transcriptional-activator-AllS	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.52e-52
LR025092.1\|VAX85925.1\|4152614_4153007_+\|Inner-membrane-protein-YqjF	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.0965e-24
LR025092.1\|VAX85927.1\|4154204_4154573_+\|Inner-membrane-protein-YhaH	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.36085e-39
LR025092.1\|VAX85941.1\|4167936_4168323_+\|Uncharacterised-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	6.84829e-53
LR025092.1\|VAX85939.1\|4164943_4165807_-\|Ribosomal-RNA-small-subunit-methyltransferase-I	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
LR025092.1\|VAX85923.1\|4151577_4151976_+\|Inner-membrane-protein-YqjE	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	1.16468e-44
LR025092.1\|VAX85931.1\|4156582_4156993_-\|P-pilus-assembly/Cpx-signaling-pathway,-periplasmic-inhibitor/zinc-resistance-associated-protein	gnl\|CDD\|226203	COG3678, CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism].	8.17264e-19
LR025092.1\|VAX85936.1\|4161447_4162779_-\|D-galactarate-permease	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.25852e-131
LR025092.1\|VAX85932.1\|4157298_4157763_+\|tRNA_anti-like-protein	gnl\|CDD\|378982	pfam12869, tRNA_anti-like, tRNA_anti-like. This is a family of bacterial, archeael and viral proteins that is related to the tRNA_anti family pfam01336. The major characteristic of families like tRNA_anti is their OB-fold, and many of them bind DNA.	3.01553e-44
LR025092.1\|VAX85926.1\|4153091_4154078_+\|Glutathionyl-hydroquinone-reductase-YqjG	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
LR025092.1\|VAX85942.1\|4168348_4168939_+\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	2.29713e-142
LR025092.1\|VAX85929.1\|4155615_4156317_+\|Pirin-like-protein-YhaK	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.76429e-64
LR025092.1\|VAX85940.1\|4165870_4167979_+\|Lipoprotein-activator-of-PBP-from-the-outer-membrane-A	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	4.36981e-121
LR025092.1\|VAX85933.1\|4158523_4159669_-\|Glycerate-2-kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0

>LR025092.1|VAX85932.1|4157298_4157763_+|tRNA_anti-like-protein
MLLRFRVLPLVFVISLLSGCGLASKAFYSAGDKLFQPGDDAVASMQTYSVAQFLQPFTLNPAKASSDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQDSTIPTLQNPKVVK
>LR025092.1|VAX85931.1|4156582_4156993_-|P-pilus-assembly/Cpx-signaling-pathway,-periplasmic-inhibitor/zinc-resistance-associated-protein
MKLITRIAFATLLTTGFSITAQAADVKAAPAPAQDPIVQHLKLTNDQVAKIKSLHQQLESNVQQISQQEIKDGALINVIDSGKWDEKAVNDQLAAFSKIDQQVRYYRVKYYFEVNKVLTPEQRTQVKKDLADALSE
>LR025092.1|VAX85930.1|4156341_4156509_+|Uncharacterised-protein
MSKKKNRKKASPTPLAPVQPQVAGAASFGYDEMLSELEAIVAEAEIRLRDEESLA
>LR025092.1|VAX85929.1|4155615_4156317_+|Pirin-like-protein-YhaK
MITTRTAKQCGQADFGWLQARYTFSFGHYFDPKLLGFASLRVLNQEVLAPGASFQARTYPKVDILNLILEGEAEYRDSDGNHVQAKAGEALLIATQPGVSYSEHNLSKEQSLTRMQLWLDACPQRENPLQQKINVADATLQLLASPEGGDNSLQLRQQAWVYHIALEKGEQINVQLHGPRAYLQSIHGSVHAVAQEQQKQALTCGDGAFIRDEANITLVADTPLRALLIDLPV
>LR025092.1|VAX85928.1|4154614_4155511_-|HTH-type-transcriptional-activator-AllS
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALSRGWETHLTIVTEALVPTPDLFPLIEKLATKSNTQLSIITEVLAGAWERLEQGRADIVVAPDMHFRSSSEINSRKLYSVLSVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPLVEKDIAEGRLRVVSPEYTNEIDIIMAWRRDSMGEAKSWCLREIPKLFAGR
>LR025092.1|VAX85927.1|4154204_4154573_+|Inner-membrane-protein-YhaH
MDWYLKVLKNYIGFGGRARRKEYWMFILVNLILTGVLSIIDKMLGWQRAGGEGILTTIYGVLVFLPWWAVQFRRLHDTDRSAWWLLLLLIPVIGWLVILIFNCQRGTEGNNRFGPDPKPFSY
>LR025092.1|VAX85926.1|4153091_4154078_+|Glutathionyl-hydroquinone-reductase-YqjG
MGQLVDGVWQDTWYDTKSTGGRFKRSVSAFRNWLTADGAAGPSGEGGFAAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFLPVSVVNPLMLENGWTFDDSFPEATGDTLYQHDFLYQLYLHADPHYTGRVTVPVLWDKKQQTIVSNESAEIIRMFNTAFDGLGARAGDYYPPALREQIDELNGWIYDNVNNGVYKAGFATSQQAYDEAVDAVFTSLERLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKRRISDYLNLYGFLRDIYQMPGIAETVSFPHIRHHYYRSHKTINPTGIISIGPQQDLNEPHGRDQRFR
>LR025092.1|VAX85925.1|4152614_4153007_+|Inner-membrane-protein-YqjF
MKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGALLPLTILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTIAGGYLLLAITGPGAFSIDRVLNKKW
>LR025092.1|VAX85924.1|4151972_4152269_+|Uncharacterised-protein
MNGRQERERQKTQLLRQIQQQRLELSACRRHWHEATAPLDRGWHTLLSLRSWLMVGSGLMAVWSVRHPHFLMRWTKRGLGLWSTWRLVRGILRQSAVR
>LR025092.1|VAX85923.1|4151577_4151976_+|Inner-membrane-protein-YqjE
MANTQHTQGPGQRVFSIGQRIVTLLVEMVETRLRLVVVELEEEKANLFQLLIMTGLTLLFAAFGLMSLLVLVIWAVDAQYRLHVMIATTVVLLLAAAIVGILTLRKARRSTLLRLTRKELENDRALLEEDKS
>LR025092.1|VAX85933.1|4158523_4159669_-|Glycerate-2-kinase
MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSLPVADGGEGTVEAMIAATQGKEHFAWVTGPLGERVKACWGMSGDGVTAFIEMAAASGLGLVPPDKRNPLITTSRGTGELILQALEHGAERIIIGIGGSATNDGGAGMMQALGARLCDAEGQEIGHGGGSLSRLSRIDLSAIDPRLRDRMIHVACDVTNPLVGEHGASRIFGPQKGATEAMIVELDRNLAHYADVIKTSLQVDVKSIPGAGAAGGMGAALMAFLNAELRSGIEIVTEALKLEEQIHDCSLVVTGEGRLDSQSVHGKVPVGVARVAKKYRKPVIGIAGSLTHDVGVVHQHGIDAVFSVLTSVSTLEEAFRGAFDNIYRASRNIAATLQVGMTTEG
>LR025092.1|VAX85934.1|4159733_4160624_-|2-hydroxy-3-oxopropionate-reductase
MTIKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETATTPKAIAEQCEVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEVTR
>LR025092.1|VAX85935.1|4160650_4161421_-|5-keto-4-deoxy-D-glucarate-aldolase
MDNAIFPNKFKAALAAHQVQIGCWCALANPISTEVLGLAGFDWLVLDAEHAPNDVTTLIPQLMALKGSSSAQVVRVPTNEPIIIKRMLDIGFYNFLVPFVETAEQAAQAVASTRYPPEGIRGVSVSHRGNMFGTVPDYFAQSNKNISILVQIESQTGVDNVEAIAATEGVDGVFVGPSDLAAALGHLGNAAHPEVQRAIQYIFASAKKHGKPSGILAPVEADARRYLEWGATFVAVGSDLGVFRSATHKLADAFKK
>LR025092.1|VAX85936.1|4161447_4162779_-|D-galactarate-permease
MILDSTLDEKKGMPTRYLILLMIFVVTAVNYGDRATLSIAGTEVAKELGLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYSYSLFFWSLFTFLQGFIDVFPLAWAGVSMFFMRFMLGFSEAPSFPANARIVAAWFPAKERGTASAIFNAAQYFSLALFSPLLGWLTFALGWEHVFTVMGIIGFVLTIIWVKFVHNPTDHPRMSAAELKYISEGGAVVDMDHKKEATPAAGPKMDYIRQLLTNRMMLGVFFGQYFLNTITWFFLTWFPIYLVQDKGMSILKVGFVASIPALFGFAGGVLGGLFSDYLIGRGCTLTFARKLPIVLGMLLASSIILCNYTASTPLVITLMALAFFGKGFGALGWPVISDVAPKEIVGLCGGVFNVFGNVASIATPLVIGYIVSELHSFNGALIFVGGSALMMMVCYLFVVGDIKRMELQK
>LR025092.1|VAX85937.1|4162839_4162989_-|Uncharacterised-protein
MTYGISTIMALNNNFILWVCIVSGGGVLIILSHVFEVIDMRIDSFNIVF
>LR025092.1|VAX85938.1|4163171_4164743_+|D-galactarate-dehydratase
MADIAIRQQSPTAFYIKVDPTDNVAIIVNDRGLTAGTRFPDGLTLVEHIPQGHKVALVDIPAHGEIIRYGEVIGYAVRDIPQGSWIDESLVELPTAPPLNTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPNYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNIALNPNFGGEVMVIGLGCEKLQPERLLQGTEDVKSIPVDSASIVSLQDEKHVGFKSMVDDILQVAERHLAKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAINEEVGKRLLEEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWYDLMDINAGTIATGEETIEDVGRKLFEFILDVASGRKKTFSDQWGLHNQLAVFNPAPVT
>LR025092.1|VAX85939.1|4164943_4165807_-|Ribosomal-RNA-small-subunit-methyltransferase-I
MKQHESADNSQGQLYIVPTPIGNLSDITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKAETLLAKLKEGQNIALVSDAGTPLINDPGYHLVRTCREANIRVVPLPGPCAAIAALSAAGLPSDRFCYEGFLPAKSKGRRDTLKALEEEPRTLIFYESTHRLVESLEDICAVLGESRYVVLARELTKTWESIHGAPIGELVAWVKEDENRRKGEMVLIVEGFKAQEEALPAAALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQGE
>LR025092.1|VAX85940.1|4165870_4167979_+|Lipoprotein-activator-of-PBP-from-the-outer-membrane-A
MVPSTFLRSKPARCLPVLLATLIFAGCGTHTQDQSAAFMQGTSQANSSFYLQQMQQSTNDSKTNWQLLAIRALLQEGKKQQAIDLFNQLPANLNSTQAREQSLLAVEVKLAQNDYQAARNLLAKIDPTNLEQPQQARYWQAQIDASQGKPSLTLLRALIAQQPLLSDAKQRQKNIDATWQALTSMPQDQANALVINADENILQGWLDLQRMWFDNRNDPTLLKAGVKDWQTRYPQNPGAKMLPTALVNMQNYKPASINKIALFLPLNGQASIFGRTIQQGFEAAKNGAPSVTGSAVPAQVAQAANVSGNDDVVSPSQAEISDLTATGSRADPVQAPTQDQAAPAAEPAAQAPATSTTPQTTASPATQPVTAPAAQPQPVVATAANPSAELKIYDTTSQPISQLLAQAQQDGATLVVGPLLKENVEEVIKSNTPLNVLALNQPEKVESRANLCYFALSPEDEARDAARHIHQQGKQTPLLLVPRGALGDRVVSAFADEWLKLGGASVLQQRFGSTAELRAGVNGGGGIALSGTPVSTLPSAQNSILGSADEMPVSSGGSVDAAYILATPEQIAYIKPMIAMRNGSQSNVTLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGSNPSLMQQALSAVRNDYSLARLYAMGADAWSLANHFTQMRQTPGFELNGNTGDLTANQDCVINRKLSWLKYQQGKIVPAS
>LR025092.1|VAX85941.1|4167936_4168323_+|Uncharacterised-protein
MAQVPAGKNRSGQLSKQTGDAWENQARRWLEGQGLRFIAANARERGGEIDLIMRDGTVTVFIEVRYRRSARYGDAAASVTPQKQQRLLKAARLWLCRQNGSFETVDCRFDVVAFTGNDIQWLKNAFGE
>LR025092.1|VAX85942.1|4168348_4168939_+|DnaA-initiator-associating-protein-DiaA
MLDRIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPGLPAIALNTDNVVLTAIANDRLHDEIYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

838469 : 889124

Enterobacteria_phage(28.85%)

tRNA,integrase,head

attL 841353:841399|attR 889596:889642

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX82807.1\|838469_839855_+\|tRNA	Cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
VAX82808.1\|839900_840113_-	ribosome-associated protein	NA	NA	NA	NA
VAX82809.1\|840114_840981_-	Bifunctional protein FolD protein	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
841353:841399	attL	NA	NA	NA	NA
VAX82810.1\|841412_842576_-\|integrase	integrase	G8C7S0	Escherichia_phage	2.9e-203	87.1
VAX82811.1\|842800_843040_-	Uncharacterised protein	Q6H9Z8	Enterobacteria_phage	4.6e-10	43.6
VAX82812.1\|843039_843258_-	DksA-like zinc finger domain containing protein	A0A0K2FI84	Escherichia_phage	1.5e-12	51.4
VAX82813.1\|843474_844335_-	Modification methylase HhaI	Q858D4	Salmonella_phage	7.1e-130	61.9
VAX82814.1\|844331_844988_-	Transcriptional activator, adenine-specific DNA methyltransferase	G8C7S6	Escherichia_phage	1.6e-113	87.5
VAX82815.1\|844984_845413_-	Uncharacterised protein	M9NYX4	Enterobacteria_phage	4.4e-64	81.0
VAX82816.1\|845409_846096_-	putative phage-type endonuclease	A0A0M3ULE0	Salmonella_phage	1.3e-113	90.6
VAX82817.1\|846088_846709_-	Uncharacterised protein	A0A076GAP8	Staphylococcus_phage	5.5e-23	43.8
VAX82818.1\|846705_847551_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	9.0e-69	59.2
VAX82819.1\|847566_847851_-	Uncharacterised protein	G8C7T1	Escherichia_phage	5.0e-40	79.8
VAX82820.1\|847939_848134_-	Uncharacterised protein	NA	NA	NA	NA
VAX82821.1\|848556_848733_+	Uncharacterised protein	NA	NA	NA	NA
VAX82822.1\|848788_849616_-	Uncharacterised protein	NA	NA	NA	NA
VAX82823.1\|849612_850362_-	Uncharacterised protein	NA	NA	NA	NA
VAX82824.1\|850520_850640_-	Uncharacterised protein	NA	NA	NA	NA
VAX82825.1\|850662_851154_-	putative HTH-type transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-72	81.6
VAX82826.1\|851472_851700_+	Uncharacterised protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
VAX82827.1\|851739_852060_+	Uncharacterised protein	A0A0M4RU01	Salmonella_phage	7.7e-37	69.8
VAX82828.1\|852146_853022_+	Uncharacterised protein	K7PGT1	Enterobacteria_phage	3.0e-59	49.0
VAX82829.1\|853018_853867_+	DNA replication protein DnaC	K7PLU3	Enterobacteria_phage	1.2e-89	60.8
VAX82830.1\|853863_854157_+	Uncharacterised protein	M1FPD5	Enterobacteria_phage	2.1e-25	62.4
VAX82831.1\|854153_854846_+	Uncharacterised protein	R9TME7	Aeromonas_phage	6.8e-14	40.6
VAX82832.1\|854842_855103_+	Uncharacterised protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
VAX82833.1\|855099_855213_+	Uncharacterised protein	A0A1U8QWK2	Salmonella_phage	9.0e-09	67.6
VAX82834.1\|855209_855635_+	Uncharacterised protein	NA	NA	NA	NA
VAX82835.1\|855634_855847_+	Uncharacterised protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
VAX82836.1\|855843_856134_+	Uncharacterised protein	F1C5B5	Cronobacter_phage	5.7e-07	50.9
VAX82837.1\|856130_856889_+	Uncharacterised protein	K7P7E4	Enterobacteria_phage	7.7e-27	35.8
VAX82838.1\|857294_857891_+	Uncharacterised protein	A0A0U2RT94	Escherichia_phage	4.3e-57	53.8
VAX82839.1\|858099_858390_+	Uncharacterised protein	K7PGZ6	Enterobacteria_phage	1.8e-45	89.6
VAX82840.1\|858386_858749_+	Crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	8.1e-51	81.4
VAX82841.1\|858745_858886_+	Uncharacterised protein	NA	NA	NA	NA
VAX82842.1\|858882_859692_+	Antitermination protein	M9NZB0	Enterobacteria_phage	2.8e-120	77.3
VAX82843.1\|860806_861031_+	Lysis protein S	M9NZI9	Enterobacteria_phage	4.0e-32	91.9
VAX82844.1\|861008_861503_+	Lysozyme RrrD	M9P0E5	Enterobacteria_phage	1.7e-88	95.1
VAX82845.1\|861499_861850_+	Uncharacterised protein	H2EQH5	Salmonella_phage	2.7e-11	39.8
VAX82846.1\|862331_862847_+	Uncharacterised protein	A0A0H5AUE2	Pseudomonas_phage	1.5e-50	61.9
VAX82847.1\|862846_864319_+	Uncharacterised protein	A0A1W6JNY3	Morganella_phage	5.9e-249	82.5
VAX82848.1\|864331_865795_+	Uncharacterised protein	F1C5D7	Cronobacter_phage	4.0e-149	56.1
VAX82849.1\|865832_866741_+\|head	phage head morphogenesis protein, SPP1 gp7 family	F1C5D8	Cronobacter_phage	1.3e-110	67.5
VAX82850.1\|867263_868649_+	Uncharacterised protein	F1C5D9	Cronobacter_phage	1.5e-153	59.7
VAX82851.1\|868652_869081_+	Uncharacterised protein	F1C5E0	Cronobacter_phage	8.1e-42	60.8
VAX82852.1\|869092_870187_+	Uncharacterised protein	F1C5E1	Cronobacter_phage	2.2e-123	62.8
VAX82853.1\|870197_870473_+	Uncharacterised protein	NA	NA	NA	NA
VAX82854.1\|870475_870856_+	Uncharacterised protein	F1C5E2	Cronobacter_phage	1.8e-29	56.1
VAX82855.1\|871028_871391_+	Uncharacterised protein	A0A0M3LSC9	Mannheimia_phage	3.3e-20	49.2
VAX82856.1\|871393_871819_+	Uncharacterised protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
VAX82857.1\|871815_872208_+	Uncharacterised protein	G0ZNE4	Cronobacter_phage	2.0e-34	51.9
VAX82858.1\|872276_873029_+	Bacterial Ig-like domain (group 2)	G0ZNE6	Cronobacter_phage	1.7e-42	41.8
VAX82859.1\|873081_873765_+	Uncharacterised protein	G0ZNE7	Cronobacter_phage	2.3e-75	59.7
VAX82860.1\|875215_875689_-	Uncharacterised protein	A0A077K9U2	Edwardsiella_phage	2.1e-14	40.6
VAX82861.1\|876171_876492_+	Uncharacterised protein	NA	NA	NA	NA
VAX82862.1\|877285_877789_+	Uncharacterised protein	NA	NA	NA	NA
VAX82863.1\|877883_881324_+	tape measure domain protein	Q5G8W8	Enterobacteria_phage	7.3e-133	40.5
VAX82864.1\|881364_881544_+	Uncharacterised protein	NA	NA	NA	NA
VAX82865.1\|881638_881965_+	Uncharacterised protein	NA	NA	NA	NA
VAX82866.1\|882090_882567_+	Uncharacterised protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.0
VAX82867.1\|882566_883037_+	Uncharacterised protein	R9TPR6	Aeromonas_phage	1.2e-27	40.4
VAX82868.1\|883033_883429_+	Uncharacterised protein	F1C5F2	Cronobacter_phage	4.7e-36	54.8
VAX82869.1\|883415_885893_+	Uncharacterised protein	F1C5A7	Cronobacter_phage	1.4e-197	45.3
VAX82870.1\|885950_887969_+	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	7.3e-24	28.5
VAX82871.1\|887978_888779_+	Uncharacterised protein	NA	NA	NA	NA
VAX82872.1\|888884_889124_+	Uncharacterised protein	K7P7N3	Enterobacteria_phage	4.2e-16	51.9
889596:889642	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1370717 : 1380191

Dickeya_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX83303.1\|1370717_1371833_+	Macrolide-specific efflux protein MacA precursor	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
VAX83304.1\|1371829_1373770_+	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
VAX83305.1\|1373846_1374068_-	Cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
VAX83306.1\|1374393_1374711_+\|protease	ATP-dependent Clp protease adapter protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
VAX83307.1\|1374741_1377021_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
VAX83308.1\|1377151_1377370_-	Translation initiation factor IF-1	NA	NA	NA	NA
VAX83309.1\|1377723_1378425_-\|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
VAX83310.1\|1378469_1380191_-	Lipid A export ATP-binding/permease protein MsbA	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_3

1619213 : 1683194

Enterobacteria_phage(48.57%)

tail,portal,plate,terminase,tRNA,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX83521.1\|1619213_1620380_-\|tRNA	tRNA-specific 2-thiouridylase MnmA	NA	NA	NA	NA
VAX83522.1\|1620376_1620835_-	Phosphatase NudJ	NA	NA	NA	NA
VAX83523.1\|1620851_1621502_-	Ribosomal large subunit pseudouridine synthase E	NA	NA	NA	NA
VAX83524.1\|1621742_1622993_+	Isocitrate dehydrogenase [NADP]	Q77Z09	Phage_21	1.1e-19	92.6
VAX83525.1\|1623265_1623979_-	HTH-type transcriptional regulator CmtR	NA	NA	NA	NA
VAX83526.1\|1623975_1624368_-	ACT domain-containing protein	NA	NA	NA	NA
VAX83527.1\|1624360_1624684_-	Antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
VAX83528.1\|1624836_1625112_+	Uncharacterised protein	NA	NA	NA	NA
VAX83529.1\|1625132_1625360_-	Uncharacterised protein	NA	NA	NA	NA
VAX83530.1\|1625472_1626666_-	Formaldehyde dismutase	NA	NA	NA	NA
VAX83531.1\|1627289_1627475_+	Stress-induced bacterial acidophilic repeat motif	NA	NA	NA	NA
VAX83532.1\|1627565_1628060_+	Uncharacterised protein	NA	NA	NA	NA
VAX83533.1\|1628086_1628593_+	Uncharacterised protein	NA	NA	NA	NA
VAX83534.1\|1628609_1629497_+	Manganese catalase	NA	NA	NA	NA
VAX83535.1\|1629552_1630959_+	Cytochrome d ubiquinol oxidase subunit 1	NA	NA	NA	NA
VAX83536.1\|1630955_1631966_+	Cytochrome d ubiquinol oxidase subunit 2	NA	NA	NA	NA
VAX83537.1\|1632081_1632279_-	Uncharacterised protein	NA	NA	NA	NA
VAX83538.1\|1632654_1632759_+	Uncharacterised protein	NA	NA	NA	NA
VAX83539.1\|1632845_1633478_+	Uncharacterised protein	NA	NA	NA	NA
VAX83540.1\|1634094_1634781_+	Cyclic di-GMP phosphodiesterase YhjH	NA	NA	NA	NA
VAX83541.1\|1635091_1636600_-	Phenolic acid decarboxylase subunit C	NA	NA	NA	NA
VAX83542.1\|1636720_1637611_+	HTH-type transcriptional regulator GltC	NA	NA	NA	NA
VAX83543.1\|1637617_1639402_-	Diguanylate cyclase DosC	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
VAX83544.1\|1639475_1640684_-	Cyclic di-GMP phosphodiesterase response regulator RpfG	NA	NA	NA	NA
VAX83545.1\|1640986_1642030_+	L-asparaginase precursor	NA	NA	NA	NA
VAX83546.1\|1642691_1643606_+	Lipid A biosynthesis lauroyl acyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
VAX83547.1\|1643695_1644334_+	Leucine efflux protein	NA	NA	NA	NA
VAX83548.1\|1644464_1644728_+	Uncharacterised protein	NA	NA	NA	NA
VAX83549.1\|1645104_1645206_-	putative membrane protein YoaK	NA	NA	NA	NA
VAX83550.1\|1645263_1646277_-	putative diguanylate cyclase YeaP	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
VAX83551.1\|1646541_1647525_-	Tyrosine recombinase XerD	Q83VS6	Escherichia_phage	1.4e-150	79.8
VAX83552.1\|1647640_1647940_-	Uncharacterised protein	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
VAX83553.1\|1648060_1648339_+	Regulatory phage protein cox	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
VAX83554.1\|1648359_1648578_+	Uncharacterised protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
VAX83555.1\|1648593_1648971_+	Uncharacterised protein	NA	NA	NA	NA
VAX83556.1\|1648986_1649259_+	Uncharacterised protein	NA	NA	NA	NA
VAX83557.1\|1649327_1649552_+	Uncharacterised protein	NA	NA	NA	NA
VAX83558.1\|1649548_1650115_+	Uncharacterised protein	D4HTX2	Vibrio_phage	2.8e-13	33.2
VAX83559.1\|1650123_1650351_+	Uncharacterised protein	A0A286S1P6	Klebsiella_phage	2.5e-05	41.0
VAX83560.1\|1650347_1651304_+	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.5e-83	54.4
VAX83561.1\|1651321_1653373_+	Bacteriophage replication gene A protein (GPA)	A0A0M4RTM8	Salmonella_phage	6.2e-188	52.3
VAX83562.1\|1654193_1656464_-	ATP-dependent DNA helicase PcrA	NA	NA	NA	NA
VAX83563.1\|1656463_1657255_-	Uncharacterised protein	NA	NA	NA	NA
VAX83564.1\|1658099_1659152_-\|portal	portal vertex protein	A0A0A7NPT9	Enterobacteria_phage	9.0e-143	68.1
VAX83565.1\|1659154_1660882_-\|terminase	terminase ATPase subunit	A0A0A7NV54	Enterobacteria_phage	1.0e-228	67.1
VAX83566.1\|1661038_1661878_+\|capsid	capsid-scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.3e-95	66.3
VAX83567.1\|1661887_1662922_+\|capsid	capsid protein	A0A0M3ULA3	Salmonella_phage	3.6e-96	50.0
VAX83568.1\|1662971_1663829_+\|terminase	terminase endonuclease subunit	A0A0A7NPX9	Enterobacteria_phage	9.8e-71	61.3
VAX83569.1\|1663941_1664457_+\|head	Phage head completion protein (GPL)	A0A0A7NPU2	Enterobacteria_phage	2.7e-39	48.8
VAX83570.1\|1664456_1664657_+	Phage Tail Protein X	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
VAX83571.1\|1664653_1664932_+	Uncharacterised protein	NA	NA	NA	NA
VAX83572.1\|1664928_1665474_+	Phage-related lysozyme (muraminidase)	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
VAX83573.1\|1665675_1665996_+	Uncharacterised protein	B6SD31	Bacteriophage	1.6e-05	33.3
VAX83574.1\|1665996_1666464_+\|tail	P2 phage tail completion protein R (GpR)	A0A0A7NPU6	Enterobacteria_phage	4.5e-46	58.8
VAX83575.1\|1666460_1667096_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.6e-57	51.9
VAX83576.1\|1667092_1667680_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.9e-60	60.5
VAX83577.1\|1667676_1668027_+\|plate	baseplate wedge subunit	A0A0A7NQ90	Enterobacteria_phage	1.8e-23	58.2
VAX83578.1\|1668028_1668952_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	7.6e-53	43.6
VAX83579.1\|1668941_1671968_+\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
VAX83580.1\|1671964_1672177_+	Uncharacterised protein	NA	NA	NA	NA
VAX83581.1\|1672176_1673274_+	Uncharacterised protein	G4KKN6	Yersinia_phage	5.2e-08	47.8
VAX83582.1\|1673873_1675097_+	Uncharacterised protein	A0A1V0S9I8	Catovirus	7.8e-05	27.5
VAX83583.1\|1675114_1675777_+	Uncharacterised protein	NA	NA	NA	NA
VAX83584.1\|1676240_1676714_-	Phage protein U	A0A0A7NV65	Enterobacteria_phage	6.6e-53	66.9
VAX83585.1\|1676729_1679705_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A0A7NRZ9	Enterobacteria_phage	2.0e-219	46.4
VAX83586.1\|1679849_1680167_-\|tail	Phage tail protein E	B9A7B2	Serratia_phage	1.0e-17	54.8
VAX83587.1\|1680212_1680728_-\|tail	major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
VAX83588.1\|1680727_1681900_-\|tail	major tail sheath protein	A0A0A7NV69	Enterobacteria_phage	5.0e-158	70.7
VAX83589.1\|1682054_1683194_+\|tail	tail protein	B9A7A9	Serratia_phage	9.4e-146	72.3

DBSCAN-SWA_4

1808201 : 1855930

Salmonella_phage(27.27%)

tail,integrase,head

attL 1810881:1810896|attR 1861382:1861397

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX83713.1\|1808201_1809011_-	Glutathione import ATP-binding protein GsiA	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
VAX83714.1\|1809012_1810005_-	putative D,D-dipeptide transport ATP-binding protein DdpD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
VAX83715.1\|1810004_1810895_-	Peptide transport system permease protein SapC	NA	NA	NA	NA
1810881:1810896	attL	NA	NA	NA	NA
VAX83716.1\|1811041_1812259_+\|integrase	Putative prophage CPS-53 integrase	K7PGY1	Enterobacteria_phage	4.3e-120	51.6
VAX83717.1\|1812726_1813035_-	Uncharacterised protein	I6PD68	Cronobacter_phage	4.6e-23	55.9
VAX83718.1\|1813031_1813643_-	Uncharacterised protein	S4TSR6	Salmonella_phage	4.9e-40	75.3
VAX83719.1\|1813635_1813974_-	Uncharacterised protein	NA	NA	NA	NA
VAX83720.1\|1814008_1815118_-	RecT family protein	H6WRX0	Salmonella_phage	9.4e-183	85.9
VAX83721.1\|1815130_1818169_-	Exodeoxyribonuclease 8	H6WRX1	Salmonella_phage	1.0e-292	57.2
VAX83722.1\|1818306_1818462_-	Uncharacterised protein	H6WRX3	Salmonella_phage	1.2e-14	75.0
VAX83723.1\|1818470_1818662_-	Uncharacterised protein	NA	NA	NA	NA
VAX83724.1\|1819050_1819272_-	Uncharacterised protein	NA	NA	NA	NA
VAX83725.1\|1819589_1819817_+	Uncharacterised protein	H6WRX5	Salmonella_phage	3.4e-15	50.0
VAX83726.1\|1819819_1820356_+	Uncharacterised protein	M9NZI6	Enterobacteria_phage	6.3e-60	68.9
VAX83727.1\|1820766_1821627_+	Uncharacterised protein	K7PGZ0	Enterobacteria_phage	2.9e-83	60.4
VAX83728.1\|1821623_1822367_+	Replication protein P	A0A0M3ULE2	Salmonella_phage	3.1e-65	55.2
VAX83729.1\|1822359_1822728_+	Uncharacterised protein	H6WRX9	Salmonella_phage	4.9e-11	43.0
VAX83730.1\|1822724_1822928_+	Uncharacterised protein	A0A2R2Z313	Escherichia_phage	2.6e-30	92.5
VAX83731.1\|1822920_1823157_+	Uncharacterised protein	A0A2R2Z309	Escherichia_phage	7.1e-32	90.7
VAX83732.1\|1823153_1823396_+	Uncharacterised protein	I6S1S6	Salmonella_phage	1.6e-34	82.5
VAX83733.1\|1823396_1823636_+	Uncharacterised protein	H9C170	Pectobacterium_phage	4.4e-29	78.9
VAX83734.1\|1823632_1823833_+	Uncharacterised protein	A0A1U8QWK2	Salmonella_phage	3.2e-09	57.5
VAX83735.1\|1823825_1824323_+	Uncharacterised protein	NA	NA	NA	NA
VAX83736.1\|1824315_1824582_+	Uncharacterised protein	NA	NA	NA	NA
VAX83737.1\|1824581_1824809_+	Uncharacterised protein	NA	NA	NA	NA
VAX83738.1\|1824805_1826086_+	Uncharacterised protein	A0A2H4FNA9	Salmonella_phage	9.6e-14	30.9
VAX83739.1\|1826078_1826318_+	Uncharacterised protein	NA	NA	NA	NA
VAX83740.1\|1826646_1826787_+	Uncharacterised protein	NA	NA	NA	NA
VAX83741.1\|1828268_1828571_+	Uncharacterised protein	S4TTI0	Salmonella_phage	1.1e-24	72.4
VAX83742.1\|1829165_1829642_+	Bacteriophage Lambda NinG protein	G0ZNC4	Cronobacter_phage	9.4e-31	50.4
VAX83743.1\|1829638_1829779_+	Uncharacterised protein	NA	NA	NA	NA
VAX83744.1\|1829775_1830597_+	chaperone protein DnaJ	K7PKS8	Enterobacteria_phage	5.1e-85	60.6
VAX83745.1\|1831342_1831654_+	Uncharacterised protein	A0A286N2Q5	Klebsiella_phage	1.1e-40	83.5
VAX83746.1\|1831650_1832190_+	putative Peptidoglycan domain protein	A0A286N2Q6	Klebsiella_phage	2.3e-102	100.0
VAX83747.1\|1832186_1832531_+	Uncharacterised protein	A0A286N2Q7	Klebsiella_phage	2.6e-38	79.8
VAX83748.1\|1832527_1832803_+	Uncharacterised protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
VAX83749.1\|1833891_1834887_+	Terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
VAX83750.1\|1834870_1836184_+	Terminase-like family protein	A0A0S2SYF1	Pseudomonas_phage	2.2e-183	73.6
VAX83751.1\|1836233_1837586_+	Uncharacterised protein	A0A1B0VMH0	Pseudomonas_phage	1.1e-124	54.5
VAX83752.1\|1837569_1838682_+\|head	phage head morphogenesis protein, SPP1 gp7 family	I6PD76	Cronobacter_phage	1.6e-110	55.1
VAX83753.1\|1839194_1839974_+	Uncharacterised protein	A0A1B0VMG1	Pseudomonas_phage	2.7e-67	64.0
VAX83754.1\|1839984_1840938_+	Uncharacterised protein	A0A1B0VMF8	Pseudomonas_phage	6.5e-132	74.4
VAX83755.1\|1841259_1841655_+	Uncharacterised protein	A0A0S2SYB7	Pseudomonas_phage	4.3e-13	43.3
VAX83756.1\|1841656_1841911_+	Uncharacterised protein	J9Q7U0	Salmonella_phage	3.0e-20	51.2
VAX83757.1\|1841920_1842154_+	Uncharacterised protein	A0A1V0E8A3	Vibrio_phage	6.4e-09	49.2
VAX83758.1\|1842140_1842524_+	Uncharacterised protein	A0A0S2SYG4	Pseudomonas_phage	1.6e-20	43.7
VAX83759.1\|1842525_1843077_+	Uncharacterised protein	G8C7Q1	Escherichia_phage	5.9e-29	39.9
VAX83760.1\|1843073_1843466_+	Uncharacterised protein	NA	NA	NA	NA
VAX83761.1\|1843489_1844662_+	Bacterial Ig-like domain (group 2)	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
VAX83762.1\|1844716_1845199_+	Uncharacterised protein	NA	NA	NA	NA
VAX83763.1\|1845974_1846103_+	Uncharacterised protein	NA	NA	NA	NA
VAX83764.1\|1846165_1849495_+\|tail	phage tail tape measure protein, lambda family	A0A2H4J107	uncultured_Caudovirales_phage	5.6e-90	34.2
VAX83765.1\|1849659_1849968_+	Uncharacterised protein	A0A286S298	Klebsiella_phage	5.4e-40	71.0
VAX83766.1\|1849954_1850437_+	Uncharacterised protein	A0A286S2B1	Klebsiella_phage	3.3e-84	97.5
VAX83767.1\|1850446_1850827_+	Uncharacterised protein	A0A286S2A6	Klebsiella_phage	2.8e-70	96.8
VAX83768.1\|1850823_1853892_+	Uncharacterised protein	A0A286S259	Klebsiella_phage	0.0e+00	97.4
VAX83769.1\|1853968_1855930_+	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	2.8e-57	34.1
1861382:1861397	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2119768 : 2130656

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX84014.1\|2119768_2120389_-	L-fuculose phosphate aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
VAX84015.1\|2120381_2121647_-	Uncharacterised protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
VAX84016.1\|2121658_2122561_-	2-(hydroxymethyl)glutarate dehydrogenase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
VAX84017.1\|2122822_2123584_+	Glycerol-3-phosphate regulon repressor	A0A077SK06	Escherichia_phage	1.9e-134	100.0
VAX84018.1\|2123604_2124465_-	Beta-lactamase SHV-1 precursor	A0A077SL40	Escherichia_phage	4.4e-156	99.7
VAX84019.1\|2124762_2125023_+	Uncharacterised protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
VAX84020.1\|2125109_2126198_+	recombination protein F	A0A077SLJ9	Escherichia_phage	8.8e-210	99.7
VAX84021.1\|2126228_2127494_-	Lactose-proton symport	NA	NA	NA	NA
VAX84022.1\|2127548_2130656_-	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

DBSCAN-SWA_6

2823165 : 2869443

Salmonella_phage(27.87%)

lysis,plate,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX84687.1\|2823165_2823483_-	Uncharacterised protein	K7PGV5	Enterobacterial_phage	1.8e-22	52.0
VAX84688.1\|2823482_2823722_-	Uncharacterised protein	K7P7N3	Enterobacteria_phage	1.1e-16	54.4
VAX84689.1\|2823827_2824628_-	Uncharacterised protein	NA	NA	NA	NA
VAX84690.1\|2824637_2826614_-	Uncharacterised protein	A0A286S1P0	Klebsiella_phage	6.9e-27	28.0
VAX84691.1\|2826635_2827409_-	Uncharacterised protein	A0A248SL44	Klebsiella_phage	3.0e-26	49.7
VAX84692.1\|2827408_2828182_-	Uncharacterised protein	A0A0M5M1K4	Salmonella_phage	1.8e-68	51.0
VAX84693.1\|2828178_2829378_-	Uncharacterised protein	A0A0M4RD32	Salmonella_phage	1.3e-161	75.3
VAX84694.1\|2829377_2829731_-	Uncharacterised protein	A0A2H4J629	uncultured_Caudovirales_phage	1.8e-50	79.5
VAX84695.1\|2829730_2830486_-\|plate	phage baseplate assembly protein V	A0A0M5M1K7	Salmonella_phage	4.0e-84	66.0
VAX84696.1\|2830524_2831031_-	Uncharacterised protein	A0A0M3ULK2	Salmonella_phage	3.1e-32	47.6
VAX84697.1\|2831069_2831348_-	Uncharacterised protein	A0A2H4J1A5	uncultured_Caudovirales_phage	2.4e-26	54.9
VAX84698.1\|2831403_2832435_-	Uncharacterised protein	A0A2H4J1B2	uncultured_Caudovirales_phage	3.5e-99	54.0
VAX84699.1\|2832437_2832740_-	Uncharacterised protein	A0A0M4R5B7	Salmonella_phage	3.4e-26	53.0
VAX84700.1\|2832740_2833340_-	Uncharacterised protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
VAX84701.1\|2833339_2835259_-	virion protein	A0A0M4REK7	Salmonella_phage	3.0e-192	72.3
VAX84702.1\|2835248_2835401_-	Uncharacterised protein	A0A2H4J1A2	uncultured_Caudovirales_phage	1.4e-17	84.0
VAX84703.1\|2835442_2835862_-	Uncharacterised protein	A0A2H4J2V6	uncultured_Caudovirales_phage	8.8e-41	63.4
VAX84704.1\|2835865_2836309_-	Uncharacterised protein	A0A0M5M1K6	Salmonella_phage	2.1e-61	80.0
VAX84705.1\|2836318_2837464_-	Uncharacterised protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	77.2
VAX84706.1\|2837467_2837908_-	Uncharacterised protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
VAX84707.1\|2838002_2838389_-	Uncharacterised protein	A0A2H4J1A4	uncultured_Caudovirales_phage	2.8e-49	79.0
VAX84708.1\|2838388_2838895_-	Uncharacterised protein	A0A2H4J488	uncultured_Caudovirales_phage	2.4e-16	37.2
VAX84709.1\|2838891_2839311_-	Uncharacterised protein	A0A0M5M3S2	Salmonella_phage	1.1e-40	61.5
VAX84710.1\|2839279_2839561_-	Uncharacterised protein	NA	NA	NA	NA
VAX84711.1\|2839600_2840542_-	Uncharacterised protein	A0A2H4J191	uncultured_Caudovirales_phage	7.8e-138	77.4
VAX84712.1\|2840553_2841048_-	Uncharacterised protein	A0A2H4JHM9	uncultured_Caudovirales_phage	2.1e-49	61.5
VAX84713.1\|2841051_2842254_-	Uncharacterised protein	A0A0M4R5A6	Salmonella_phage	5.3e-107	52.8
VAX84714.1\|2842263_2842458_-	Uncharacterised protein	NA	NA	NA	NA
VAX84715.1\|2843107_2844559_-	phage-associated protein, family	A0A0M4S6U1	Salmonella_phage	7.2e-191	68.4
VAX84716.1\|2844796_2846197_-\|terminase	phage terminase, large subunit, PBSX family	A0A077KAW0	Edwardsiella_phage	7.2e-188	69.2
VAX84717.1\|2846147_2846924_-	Uncharacterised protein	A0A077KBY7	Edwardsiella_phage	4.2e-12	64.2
VAX84718.1\|2846992_2847130_-	Uncharacterised protein	NA	NA	NA	NA
VAX84719.1\|2847132_2847600_-\|lysis	Bacteriophage lysis protein	Q76H63	Enterobacteria_phage	7.5e-57	73.5
VAX84720.1\|2847596_2848100_-	Lysozyme RrrD	A0A1V0E5Q7	Salmonella_phage	5.0e-75	78.4
VAX84721.1\|2848102_2848417_-	Uncharacterised protein	H6WRZ3	Salmonella_phage	6.3e-44	86.1
VAX84722.1\|2849602_2850412_-	Antitermination protein	M9NZB0	Enterobacteria_phage	1.9e-116	75.1
VAX84723.1\|2850408_2850549_-	Uncharacterised protein	NA	NA	NA	NA
VAX84724.1\|2850545_2851184_-	Bacteriophage Lambda NinG protein	H6WRY9	Salmonella_phage	1.2e-73	68.4
VAX84725.1\|2851176_2851347_-	prophage protein NinE	G8C7V4	Escherichia_phage	1.7e-14	73.2
VAX84726.1\|2851346_2851802_-	Uncharacterised protein	K7P7B8	Enterobacteria_phage	4.0e-55	68.2
VAX84727.1\|2852302_2853061_-	Uncharacterised protein	K7P7E4	Enterobacteria_phage	7.7e-27	35.8
VAX84728.1\|2853057_2853348_-	Uncharacterised protein	F1C5B5	Cronobacter_phage	5.7e-07	50.9
VAX84729.1\|2853344_2853557_-	Uncharacterised protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
VAX84730.1\|2853556_2853982_-	Uncharacterised protein	NA	NA	NA	NA
VAX84731.1\|2853978_2854092_-	Uncharacterised protein	A0A1U8QWK2	Salmonella_phage	9.0e-09	67.6
VAX84732.1\|2854088_2854349_-	Uncharacterised protein	T1S9K2	Salmonella_phage	1.6e-29	75.6
VAX84733.1\|2854345_2854768_-	Uncharacterised protein	R9TME7	Aeromonas_phage	1.5e-11	39.9
VAX84734.1\|2854764_2855067_-	Uncharacterised protein	NA	NA	NA	NA
VAX84735.1\|2855063_2855801_-	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	6.9e-65	55.2
VAX84736.1\|2855797_2856826_-	Bacteriophage replication protein O	A5VW95	Enterobacteria_phage	1.5e-62	80.8
VAX84737.1\|2856822_2857620_-	ParB/RepB/Spo0J family partition protein	A0A2H4J902	uncultured_Caudovirales_phage	2.8e-88	67.9
VAX84738.1\|2857706_2858027_-	Uncharacterised protein	A0A0M4RU01	Salmonella_phage	7.7e-37	69.8
VAX84739.1\|2858076_2858292_-	Pyocin repressor protein	Q716D6	Shigella_phage	4.2e-15	60.9
VAX84740.1\|2858391_2859024_+	putative HTH-type transcriptional regulator	A0A1I9KG86	Aeromonas_phage	9.2e-34	40.0
VAX84741.1\|2859365_2859476_+	Uncharacterised protein	NA	NA	NA	NA
VAX84742.1\|2859468_2859663_+	Uncharacterised protein	NA	NA	NA	NA
VAX84743.1\|2859752_2860037_+	Uncharacterised protein	G8C7T1	Escherichia_phage	4.3e-39	78.7
VAX84744.1\|2860052_2860898_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.6e-68	58.8
VAX84745.1\|2860894_2861515_+	Uncharacterised protein	A0A076GAP8	Staphylococcus_phage	5.5e-23	43.8
VAX84746.1\|2861507_2862194_+	putative phage-type endonuclease	A0A0M3ULE0	Salmonella_phage	4.8e-113	90.6
VAX84747.1\|2862190_2862349_+	Uncharacterised protein	A0A0N7CHV0	Escherichia_phage	6.7e-10	58.8
VAX84748.1\|2862345_2862873_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.3e-57	62.2
VAX84749.1\|2862869_2863640_+	Uncharacterised protein	D5LH17	Escherichia_phage	3.2e-65	51.0
VAX84750.1\|2863856_2864621_+	Uncharacterised protein	Q71T76	Escherichia_phage	2.7e-72	58.7
VAX84751.1\|2864617_2864809_+	Uncharacterised protein	A0A0P0ZC60	Stx2-converting_phage	1.6e-13	64.4
VAX84752.1\|2864805_2865111_+	Uncharacterised protein	A0A1B3AZN4	Gordonia_phage	7.4e-05	35.6
VAX84753.1\|2865107_2865317_+	Uncharacterised protein	NA	NA	NA	NA
VAX84754.1\|2865313_2865532_+	DksA-like zinc finger domain containing protein	A0A0K2FI84	Escherichia_phage	2.0e-12	52.2
VAX84755.1\|2865535_2865781_+	Uncharacterised protein	A0A286S2A4	Klebsiella_phage	1.9e-35	92.1
VAX84756.1\|2865823_2867086_+	Integrase	A0A286S1S8	Klebsiella_phage	1.7e-233	95.0
VAX84757.1\|2867070_2867352_+	LysR substrate binding domain protein	NA	NA	NA	NA
VAX84758.1\|2867326_2868133_-	Maltose-binding periplasmic proteins/domains	NA	NA	NA	NA
VAX84759.1\|2868147_2869443_-	Alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	9.6e-62	36.8

DBSCAN-SWA_7

3138937 : 3145842

Bacillus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX84994.1\|3138937_3140416_+	Signal transduction histidine-protein kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3
VAX84995.1\|3140412_3141135_+	Transcriptional regulatory protein BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
VAX84996.1\|3141453_3142815_+\|protease	putative protease YhbU precursor	Q6DW11	Phage_TP	1.8e-207	94.8
VAX84997.1\|3143057_3143954_+	putative lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
VAX84998.1\|3144194_3144968_-	Stage 0 sporulation protein KE	G9BWD6	Planktothrix_phage	3.9e-26	36.7
VAX84999.1\|3144978_3145842_-	Stage 0 sporulation protein KD	G9BWD6	Planktothrix_phage	5.7e-10	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. LR025093

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

82534 : 122191

Shigella_phage(19.05%)

transposase,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX91683.1\|82534_82951_+\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA
VAX91684.1\|83318_84242_+	Transposase DDE domain protein	Q9MCT5	Escherichia_phage	5.4e-176	99.3
VAX91685.1\|84421_84796_-	Uncharacterised protein	NA	NA	NA	NA
VAX91686.1\|84851_85178_-	Uncharacterised protein	NA	NA	NA	NA
VAX91687.1\|85174_85903_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
VAX91688.1\|85899_86331_-	plasmid SOS inhibition protein B	NA	NA	NA	NA
VAX91689.1\|86375_88433_-	plasmid partitioning protein	G8DH78	Emiliania_huxleyi_virus	9.1e-22	25.4
VAX91690.1\|88502_88751_-	Uncharacterised protein	NA	NA	NA	NA
VAX91691.1\|88799_89342_-	Helix-destabilizing protein	A0A0A0P1Q9	Enterobacteria_phage	3.5e-50	76.7
VAX91692.1\|90176_90740_-	16S ribosomal RNA methyltransferase KsgA/Dim1 family protein	M4M9L8	Vibrio_phage	1.7e-18	42.0
VAX91693.1\|90787_92143_-	Uncharacterised protein	NA	NA	NA	NA
VAX91694.1\|92194_92425_-	Uncharacterised protein	NA	NA	NA	NA
VAX91695.1\|92516_92744_-	Uncharacterised protein	NA	NA	NA	NA
VAX91696.1\|93524_93842_-	Uncharacterised protein	NA	NA	NA	NA
VAX91697.1\|93876_94131_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.2e-11	50.0
VAX91698.1\|94367_94793_-	Antirestriction protein KlcA	NA	NA	NA	NA
VAX91699.1\|95313_95544_-	Uncharacterised protein	NA	NA	NA	NA
VAX91700.1\|95758_96184_+	LexA repressor	A0A1W6JNS2	Morganella_phage	2.9e-31	50.4
VAX91701.1\|96183_97455_+	DNA polymerase IV	F1C5A5	Cronobacter_phage	2.5e-155	64.0
VAX91702.1\|97771_98629_-\|transposase	putative transposase	A0A1B0VCD8	Salmonella_phage	1.0e-128	80.9
VAX91703.1\|98625_98910_-\|transposase	putative transposase	A0A1W6JP07	Morganella_phage	1.7e-40	85.7
VAX91704.1\|99445_100279_-	Uncharacterised protein	NA	NA	NA	NA
VAX91705.1\|100278_101250_-	Plasmid partition protein B	I3WF22	Macacine_betaherpesvirus	4.1e-150	86.6
VAX91706.1\|101249_102416_-	Sporulation initiation inhibitor protein soj	A0A2I6B2X3	Macacine_betaherpesvirus	1.4e-224	97.7
VAX91707.1\|103167_104178_+	RepFIB replication protein A	J9Q7H0	Salmonella_phage	3.0e-87	54.3
VAX91708.1\|104894_105635_-	Tyrosine recombinase XerD	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
VAX91709.1\|106778_107726_+	putative diguanylate cyclase YeaP	G3MA91	Bacillus_virus	1.8e-12	30.6
VAX91710.1\|108128_109052_+	Transposase DDE domain protein	Q9MCT5	Escherichia_phage	2.1e-175	98.4
VAX91711.1\|111201_112038_+	putative membrane protein YjcC	NA	NA	NA	NA
VAX91712.1\|113020_114298_-	Uncharacterised protein	NA	NA	NA	NA
VAX91713.1\|114308_114416_-	Uncharacterised protein	NA	NA	NA	NA
VAX91714.1\|114360_116358_-\|holin	High-affinity choline transport protein	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
VAX91715.1\|116509_116803_-\|transposase	IS1 transposase	U5P0U6	Shigella_phage	3.1e-45	91.8
VAX91716.1\|117397_118279_-\|transposase	IS2 transposase TnpB	Q9ZXG3	Shigella_phage	1.2e-100	63.2
VAX91717.1\|118236_118632_-	IS2 repressor TnpA	Q76S41	Shigella_phage	1.4e-43	75.4
VAX91718.1\|118886_119180_+\|transposase	IS1 transposase	U5P0U6	Shigella_phage	7.0e-45	91.8
VAX91719.1\|119333_119738_+	Transposase	NA	NA	NA	NA
VAX91720.1\|120033_120465_-	Silver-binding protein SilE precursor	NA	NA	NA	NA
VAX91721.1\|120715_122191_-	Sensor kinase CusS	W8CYF6	Bacillus_phage	1.0e-27	30.1

DBSCAN-SWA_2

171937 : 180384

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX91777.1\|171937_172948_-	Phosphonate dehydrogenase	A0A1V0SBV6	Catovirus	1.4e-15	25.1
VAX91778.1\|172956_173784_-	Phosphate-import permease protein PhnE	NA	NA	NA	NA
VAX91779.1\|173792_174656_-	Phosphate-import protein PhnD precursor	NA	NA	NA	NA
VAX91780.1\|174652_175480_-	Glutamine transport ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	9.0e-21	37.6
VAX91781.1\|175821_176142_+	Uncharacterised protein	Q38213	Escherichia_phage	3.2e-27	52.9
VAX91782.1\|176335_177040_-	Integrase core domain protein	A0A077SL39	Escherichia_phage	1.2e-138	99.6
VAX91783.1\|177186_178296_+	Transposase, TnpA family	A0A1B0V7H9	Salmonella_phage	4.0e-133	66.6
VAX91784.1\|178406_179012_+	Integrase core domain protein	A0A077SL39	Escherichia_phage	3.7e-117	100.0
VAX91785.1\|179562_180384_-	Transposase, TnpA family	A0A1B0V7H9	Salmonella_phage	6.8e-138	98.8

DBSCAN-SWA_3

188634 : 202112

Enterobacteria_phage(36.36%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX91794.1\|188634_189339_-	Integrase core domain protein	A0A077SL39	Escherichia_phage	1.2e-138	99.6
VAX91795.1\|189385_191401_-	Transposase, TnpA family	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0
VAX91796.1\|191705_192026_-	Uncharacterised protein	NA	NA	NA	NA
VAX91797.1\|192039_192915_-	Beta-lactamase CTX-M-1 precursor	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
VAX91798.1\|193067_193190_-	Uncharacterised protein	NA	NA	NA	NA
VAX91799.1\|193170_194433_-	Transposase DDE domain protein	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
VAX91800.1\|194614_194833_-	Transposase, TnpA family	Q1MVP5	Enterobacteria_phage	4.4e-36	100.0
VAX91801.1\|194996_195554_+	Transposon Tn3 resolvase	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
VAX91802.1\|195736_196597_+	Beta-lactamase TEM precursor	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
VAX91803.1\|196707_199215_-	Transposase, TnpA family	A0A1B0V7H9	Salmonella_phage	0.0e+00	70.8
VAX91804.1\|199217_199778_-	DNA-invertase hin	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
VAX91805.1\|199903_200254_-	Cyclic di-GMP phosphodiesterase Gmr	NA	NA	NA	NA
VAX91806.1\|200456_201470_-	Tyrosine recombinase XerD	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
VAX91807.1\|201614_202112_+	Dihydrofolate reductase	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. LR025094

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

485 : 55219

Klebsiella_phage(86.27%)

portal,capsid,terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
VAX91885.1\|485_746_+	plasmid-partitioning protein	Q6UAV8	Klebsiella_phage	2.5e-30	82.4
VAX91886.1\|824_2324_-	Uncharacterised protein	A0A0P0IDN1	Klebsiella_phage	2.2e-150	74.7
VAX91887.1\|2392_15394_-	chromosome segregation protein SMC	Q6UAW1	Klebsiella_phage	0.0e+00	46.3
VAX91888.1\|15456_16050_-\|tail	Phage-related protein, tail component	Q6UAW2	Klebsiella_phage	3.7e-85	80.7
VAX91889.1\|16066_16894_-	Uncharacterised protein	A0A0P0IYG9	Acinetobacter_phage	2.3e-08	44.0
VAX91890.1\|16940_17651_-	NlpC/P60 family protein	Q6UAW4	Klebsiella_phage	6.7e-134	89.8
VAX91891.1\|17652_18408_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	6.7e-124	80.1
VAX91892.1\|18404_18743_-	Phage-related protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
VAX91893.1\|18742_22099_-\|tail	phage tail tape measure protein, TP901 family, core region	Q6UAW7	Klebsiella_phage	0.0e+00	87.0
VAX91894.1\|22331_22697_-	Uncharacterised protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
VAX91895.1\|22754_23216_-	Uncharacterised protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
VAX91896.1\|23247_23649_-	phage protein, HK97 gp10 family	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
VAX91897.1\|23645_24035_-	Uncharacterised protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
VAX91898.1\|24015_24354_-	Uncharacterised protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
VAX91899.1\|24350_24668_-\|head,tail	Phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	9.9e-45	88.8
VAX91900.1\|24648_24909_-	Uncharacterised protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
VAX91901.1\|24967_26254_-\|capsid	phage major capsid protein, HK97 family	Q6UAX6	Klebsiella_phage	5.2e-217	89.5
VAX91902.1\|26331_27252_-	Putative signal peptide peptidase SppA	Q6UAX7	Klebsiella_phage	2.8e-148	87.9
VAX91903.1\|27288_28548_-\|portal	phage portal protein, HK97 family	Q6UAX8	Klebsiella_phage	2.8e-223	90.0
VAX91904.1\|28720_30430_-\|terminase	Phage terminase-like protein, large subunit	Q6UAY0	Klebsiella_phage	0.0e+00	95.1
VAX91905.1\|30464_30887_-\|terminase	putative phage terminase, small subunit, P27 family	Q6UAY1	Klebsiella_phage	6.3e-71	95.0
VAX91906.1\|31316_31748_-	Uncharacterised protein	Q6UAS0	Klebsiella_phage	7.6e-40	59.9
VAX91907.1\|31744_32029_-	Uncharacterised protein	Q6UAS1	Klebsiella_phage	3.1e-05	37.5
VAX91908.1\|32371_33433_-	Uncharacterised protein	Q6UAS3	Klebsiella_phage	8.8e-37	38.3
VAX91909.1\|33602_33902_-	Nucleoside 2-deoxyribosyltransferase	Q6UAS4	Klebsiella_phage	3.0e-51	96.0
VAX91910.1\|33910_34129_-	Uncharacterised protein	Q6UAS5	Klebsiella_phage	2.9e-11	97.0
VAX91911.1\|34155_34632_-	Uncharacterised protein	Q6UAS7	Klebsiella_phage	1.7e-61	79.7
VAX91912.1\|34648_35140_-	Uncharacterised protein	Q6UAS8	Klebsiella_phage	4.1e-82	90.2
VAX91913.1\|35136_35448_-	Uncharacterised protein	Q6UAS9	Klebsiella_phage	6.3e-44	89.1
VAX91914.1\|35506_36568_-	Modification methylase RsrI	Q6UAT0	Klebsiella_phage	1.0e-170	92.9
VAX91915.1\|36885_37116_-	Uncharacterised protein	Q6UAT1	Klebsiella_phage	1.6e-28	84.0
VAX91916.1\|37124_37346_-	Uncharacterised protein	O64358	Escherichia_phage	3.0e-32	90.4
VAX91917.1\|37516_37825_+	Phage-related protein	Q6UAT3	Klebsiella_phage	3.9e-46	94.2
VAX91918.1\|37824_38112_+	DNA-binding transcriptional repressor PuuR	Q6UAT4	Klebsiella_phage	1.7e-43	96.8
VAX91919.1\|38156_38360_-	Uncharacterised protein	Q6UAT5	Klebsiella_phage	3.5e-19	76.6
VAX91920.1\|38463_38691_-	Uncharacterised protein	O64355	Escherichia_phage	2.8e-25	80.3
VAX91921.1\|38711_39077_-	Uncharacterised protein	Q6UAT7	Klebsiella_phage	2.1e-51	93.5
VAX91922.1\|39030_39276_-	Uncharacterised protein	G8C7U9	Escherichia_phage	5.1e-25	83.1
VAX91923.1\|39272_39749_-	Uncharacterised protein	Q6UAU1	Klebsiella_phage	3.8e-16	61.5
VAX91924.1\|39745_39880_-	Uncharacterised protein	Q6UAU2	Klebsiella_phage	3.5e-12	83.7
VAX91925.1\|39876_40485_-	DNA polymerase III PolC-type	Q6UAU3	Klebsiella_phage	3.0e-98	88.5
VAX91926.1\|40896_41634_-	Phage antitermination protein Q	Q6UAU4	Klebsiella_phage	2.2e-119	84.5
VAX91927.1\|41913_42522_+	transcriptional repressor DicA	Q6UAU6	Klebsiella_phage	1.3e-104	92.6
VAX91928.1\|42772_46777_+	Uncharacterised protein	A0A2I6TD01	Escherichia_phage	0.0e+00	81.3
VAX91929.1\|46769_47066_+	Uncharacterised protein	NA	NA	NA	NA
VAX91930.1\|47062_47413_+	Uncharacterised protein	O64343	Escherichia_phage	3.3e-49	76.7
VAX91931.1\|47541_48066_+	Uncharacterised protein	NA	NA	NA	NA
VAX91932.1\|48092_49226_-	Colicin-A	NA	NA	NA	NA
VAX91933.1\|49753_49918_+	Uncharacterised protein	Q6UAV3	Klebsiella_phage	1.1e-18	92.6
VAX91934.1\|49914_50145_+	Uncharacterised protein	NA	NA	NA	NA
VAX91935.1\|50141_50942_+	putative phage-encoded protein	O64341	Escherichia_phage	4.2e-116	77.0
VAX91936.1\|50996_52919_-	Uncharacterised protein	Q6UAV6	Klebsiella_phage	0.0e+00	93.9
VAX91937.1\|53299_53566_+	Uncharacterised protein	Q6UAV6	Klebsiella_phage	5.7e-38	93.1
VAX91938.1\|53682_54378_+	Uncharacterised protein	Q6UAV6	Klebsiella_phage	1.3e-94	90.3
VAX91939.1\|54667_55219_+	Uncharacterised protein	Q6UAV6	Klebsiella_phage	4.7e-66	90.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. LR025092

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. LR025093

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. LR025094

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection